BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8618
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 31/243 (12%)
Query: 8 LDREARSSHELVAEARD-QGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPP 66
LDRE ++ + L A+A D + + P I V D+NDNAPE ++ +V E
Sbjct: 63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHA-TVPEMSIL 121
Query: 67 GTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTK-SVLDHEDR 122
GT V A D DD G++A + YSIL+G+ F+I+P + +I+T +D E +
Sbjct: 122 GTSVTNVTATDADDPVYGNSAKLVYSILEGQP-----YFSIEPETAIIKTALPNMDREAK 176
Query: 123 SIYRIAVAATDNGFPS--RQTVRLLRVEVLDLNDNRPTFTSSSLLF-------------K 167
Y + + A D G S L V + D+NDN P F S F +
Sbjct: 177 EEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGR 236
Query: 168 VSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVS----GEICISQDLDFESRSSYEFPVV 223
V A+D D G NA +Y + + T F + S + G I + + LDFE++ SY V
Sbjct: 237 VKANDQDIGENAQSSYDIIDG-DGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVE 295
Query: 224 ATD 226
A +
Sbjct: 296 AAN 298
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 37/176 (21%)
Query: 77 DKDDGSNATISYSILKGRDTDGYG-VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNG 135
D D GS I Y IL G DG G +F I+ I+G I LD E+++ Y + A D
Sbjct: 27 DLDPGSK-KIKY-ILSG---DGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD-- 79
Query: 136 FPSRQTVR---LLRVEVLDLNDNRPTF----------------TSSSLLFKVSASDPDCG 176
F + + + ++V D+NDN P F TS + + A DP G
Sbjct: 80 FETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYG 139
Query: 177 VNAMVNYTLGESPSRTNHFYMKSVSGEICISQ----DLDFESRSSYEFPVVATDRG 228
+A + Y++ E +F S+ E I + ++D E++ Y + A D G
Sbjct: 140 NSAKLVYSILEGQP---YF---SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMG 189
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 107/251 (42%), Gaps = 48/251 (19%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPD 174
S LD E Y + V A D T + V D+NDN P F S+ +V P+
Sbjct: 177 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV----PE 232
Query: 175 CGVNAMVN------------------YTLGESPSR---------TNHFYMKSVSGEICIS 207
VNA + YT+ P + TN +K+ G
Sbjct: 233 NEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKG----- 287
Query: 208 QDLDFESRSSY 218
LDFE++ Y
Sbjct: 288 --LDFEAKQQY 296
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRV---AVKISVTDVNDNAPELVDPQEDVI 58
+ T + LD EA+ + L ++ P S V A + AP + P E +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENE-EPFEGSLVPSTATVTVDVVDVNEAPIFM-PAERRV 339
Query: 59 SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
V E+ G E+ A + D + I+Y I RDT + I+P +G I T++ +D
Sbjct: 340 EVPEDFGVGQEITSYTAREPDTFMDQKITYRIW--RDTANW--LEINPETGAIFTRAEMD 395
Query: 119 HED-----RSIYRIAVAATDNGFP 137
ED S Y + ATD+G P
Sbjct: 396 REDAEHVKNSTYVALIIATDDGSP 419
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 30/251 (11%)
Query: 2 ISTREPLDREARSSHELVAEARDQ-------GSPPRSSRVAVKISVTDVNDNAPELVDPQ 54
++ +P+D E L A +Q PP+S+ V ++V DVN+N P
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQST-ATVSVTVIDVNENP--YFAPN 341
Query: 55 EDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTK 114
+I E GT + A D D I Y+ L +D IDP++G I T
Sbjct: 342 PKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL----SDPANWLKIDPVNGQITTI 397
Query: 115 SVLDHE----DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF---------TS 161
+VLD E +IY A+DNG P L++ +LD+NDN P T
Sbjct: 398 AVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETP 457
Query: 162 SSLLFKVSASDPDCGVNA-MVNYTLGESP-SRTNHFYMKSVSGEIC-ISQDLDFESRSSY 218
++A D D NA + L SP + ++ + ++G+ ++ + F Y
Sbjct: 458 EPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIY 517
Query: 219 EFPVVATDRGK 229
E P++ TD G
Sbjct: 518 EVPIIITDSGN 528
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
++S +PLDRE + L A A D + + + I+V D+NDN PE + Q SV
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLH-QVWNGSV 117
Query: 61 REEQPPGTEVVRARAVDKDDGS--NATISYSIL-KGRDTDGYGVFTIDPISG-VIRTKSV 116
E PGT V+ A+D DD + N + Y IL + T +FTI+ +G +I +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 117 LDHEDRSIYRIAVAATD-NGFPSR--QTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
LD E Y + + ATD G P+ + V D+NDN P FT+ + +V
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEV 232
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 69 EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
E+VR R+ D+D N ++ YS+ G D G+F I+PISG + LD E + + +
Sbjct: 20 ELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 76
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDP 173
A D NG + ++ + V+D+NDNRP F + + V+A D
Sbjct: 77 RAHAVDINGNQVENPIDIV-INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 174 D--CGVNAMVNY-TLGESPS--RTNHFYMKSVSGEIC-ISQDLDFESRSSYEFPVVATD 226
D +N M+ Y L ++PS N F + + +G+I ++ LD E Y + ATD
Sbjct: 136 DDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 1 EISTREPLDREA----RSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED 56
+I+T LDRE+ + + A D G PP S ++I + D+NDNAP+++ PQE
Sbjct: 393 QITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVL-PQE- 450
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+ P + A+D D NA L +TI+ ++G ++
Sbjct: 451 ---AETCETPEPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNL 507
Query: 117 -LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN 155
+ + IY + + TD+G P + + +LRV+V + N
Sbjct: 508 KIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSN 547
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 118
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 119 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 178
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS 162
S LD E Y + V A D T + V D+NDN P F S
Sbjct: 179 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 96 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 155 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 201
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 7 PLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--SVREEQ 64
PLDRE + L + A + P + + I+V D NDN P+ +DV SVRE
Sbjct: 71 PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT---QDVFRGSVREGV 127
Query: 65 PPGTEVVRARAVDKDDG---SNATISYSILKGRDTDGY-GVFTIDPISGVIR-TKSVLDH 119
PGT+V+ A D+DD N +SYSILK + +FTI+ +GVI + LD
Sbjct: 128 QPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 187
Query: 120 EDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
E Y + V ATD +++ D NDN P F
Sbjct: 188 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF 227
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAV-AATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G + LD E+ Y ++ A ++NG P + +
Sbjct: 40 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 99
Query: 144 LLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDPDCGV---NAMVNYT-LG 186
+ + V+D NDNRP FT + + VSA+D D + N +++Y+ L
Sbjct: 100 I-TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 158
Query: 187 ESPSR--TNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATD 226
+ P N F + +G I I LD E Y V ATD
Sbjct: 159 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 201
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 2 ISTREPLDREARSSHEL---VAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
++T + LD E R + L V A P +S V ++V DVN+ AP V P +
Sbjct: 288 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFV-PAVSRV 345
Query: 59 SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
V E+ G +++ A D D +SY I G D + T++ +G++ LD
Sbjct: 346 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPARW--LTVNKDNGIVTGNGNLD 401
Query: 119 HEDRSI----YRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPD 174
E + Y + + TD+G L + VLD+NDN P S +F + +P+
Sbjct: 402 RESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP--VPSPRVFTMCDQNPE 459
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 7 PLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--SVREEQ 64
PLDRE + L + A + P + + I+V D NDN P+ +DV SVRE
Sbjct: 220 PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT---QDVFRGSVREGV 276
Query: 65 PPGTEVVRARAVDKDDG---SNATISYSILKGRDTDGY-GVFTIDPISGVIR-TKSVLDH 119
PGT+V+ A D+DD N +SYSILK + +FTI+ +GVI + LD
Sbjct: 277 QPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336
Query: 120 EDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
E Y + V ATD +++ D NDN P F
Sbjct: 337 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF 376
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAV-AATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G + LD E+ Y ++ A ++NG P + +
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 248
Query: 144 LLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDPDCGV---NAMVNYT-LG 186
+ + V+D NDNRP FT + + VSA+D D + N +++Y+ L
Sbjct: 249 I-TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 307
Query: 187 ESPSR--TNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATD 226
+ P N F + +G I I LD E Y V ATD
Sbjct: 308 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 350
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 2 ISTREPLDREARSSHEL---VAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
++T + LD E R + L V A P +S V ++V DVN+ AP V P +
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFV-PAVSRV 494
Query: 59 SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
V E+ G +++ A D D +SY I G D + T++ +G++ LD
Sbjct: 495 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPARW--LTVNKDNGIVTGNGNLD 550
Query: 119 HEDRSI----YRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPD 174
E + Y + + TD+G L + VLD+NDN P S +F + +P+
Sbjct: 551 RESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP--VPSPRVFTMCDQNPE 608
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
+ + E+ P G+ V + A D D N + + + G + + F ++P +GV+ + L
Sbjct: 17 LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-SGEEASRF--FAVEPDTGVVWLRQPL 70
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
D E +S + + + +D+ R + ++V D+NDN PTF +
Sbjct: 71 DRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 127
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
+F V+A+DPD G V Y+ + PS F + S G + + Q+LD+E +Y+ V A
Sbjct: 128 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 184
Query: 225 TDRGK 229
TD+ K
Sbjct: 185 TDQDK 189
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 2 ISTREPLDREARSSHELVAEARD-QGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ R+PLDRE +S + D QG R V I V DVNDNAP + Q + +
Sbjct: 64 VWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHN-QPYSVRI 118
Query: 61 REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
E P GT + A D D G+ ++ YS F ID G++ LD+E
Sbjct: 119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-----FFAIDSARGIVTVIQELDYE 173
Query: 121 DRSIYRIAVAATD 133
Y++ V ATD
Sbjct: 174 VTQAYQLTVNATD 186
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
+ + E+ P G+ V + A D D N + + + G + + F ++P +GV+ + L
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-PGEEASRF--FAVEPDTGVVWLRQPL 71
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
D E +S + + + +D+ R + ++V D+NDN PTF +
Sbjct: 72 DRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
+F V+A+DPD G V Y+ + PS F + S G + + Q+LD+E +Y+ V A
Sbjct: 129 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 185
Query: 225 TDRGK 229
TD+ K
Sbjct: 186 TDQDK 190
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 2 ISTREPLDREARSSHELVAEARD-QGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ R+PLDRE +S + D QG R V I V DVNDNAP + Q + +
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHN-QPYSVRI 119
Query: 61 REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
E P GT + A D D G+ ++ YS F ID G++ LD+E
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-----FFAIDSARGIVTVIQELDYE 174
Query: 121 DRSIYRIAVAATD 133
Y++ V ATD
Sbjct: 175 VTQAYQLTVNATD 187
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
+ + E+ P G+ V + A D D N + + + G + + F ++P +GV+ + L
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-SGEEASRF--FAVEPDTGVVWLRQPL 71
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
D E +S + + + +D+ R + ++V D+NDN PTF +
Sbjct: 72 DRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
+F V+A+DPD G V Y+ + PS F + S G + + Q+LD+E +Y+ V A
Sbjct: 129 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 185
Query: 225 TDRGK 229
TD+ K
Sbjct: 186 TDQDK 190
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 2 ISTREPLDREARSSHELVAEARD-QGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ R+PLDRE +S + D QG R V I V DVNDNAP + Q + +
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHN-QPYSVRI 119
Query: 61 REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
E P GT + A D D G+ ++ YS F ID G++ LD+E
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-----FFAIDSARGIVTVIQELDYE 174
Query: 121 DRSIYRIAVAATD 133
Y++ V ATD
Sbjct: 175 VTQAYQLTVNATD 187
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 31 SSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSI 90
S+ V + I VTDVNDNAP+ P +V E+ P GT ++R +A+D D GSNA I Y +
Sbjct: 305 STSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV 364
Query: 91 LKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRV 147
+D + F +D ++ K + + + Y V A D G P + V +RV
Sbjct: 365 -----SDDH--FAVDSNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 31/153 (20%)
Query: 98 GYGVFTIDPISGVIRTKSVLDHEDR---SIYRIAVAATDN--GFPSRQTVRLLRVEVLDL 152
G G F I P SG+++ LD ED +Y + V AT++ GF T L + V D+
Sbjct: 261 GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF---STSVDLTIRVTDV 317
Query: 153 NDNRPTF---------------TSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYM 197
NDN P F +S+L +V A D D G NA + Y + + +HF +
Sbjct: 318 NDNAPKFELPDYQAHNVDEDIPLGTSIL-RVKAMDSDSGSNAEIEYLVSD-----DHFAV 371
Query: 198 KSVSGEICISQDLDFESRSS-YEFPVVATDRGK 229
S +G I ++ LD ++ ++ YEF V A D+G+
Sbjct: 372 DS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGE 403
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 90/211 (42%), Gaps = 32/211 (15%)
Query: 36 VKISVTDVNDNAPELVD---PQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILK 92
V I V DVND P ++ P + V+ + PP T V +A D D N I Y I+
Sbjct: 97 VIILVKDVNDEPPYFINRPLPMQAVVQL--NAPPNTPVFTLQARDPDTDHN--IHYFIV- 151
Query: 93 GRDTDGYGVFTIDPISGVIRTKSV----LDHEDRSIYRIAVAATD-NGFPSRQTVRLLRV 147
RD G G F +D SGV+RT+ LD E Y + V A D NG + +
Sbjct: 152 -RDRTG-GRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDDRRFQSTPE 205
Query: 148 EVLDLNDNR--PTFTSSSLLFKV---SASDPD-CGVNAM------VNYTLGESPSRTNHF 195
E L + + P F S ++ D D + A + YTL F
Sbjct: 206 ERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTF 265
Query: 196 YMKSVSGEICISQDLDFES-RSSYEFPVVAT 225
+ SG + ++++LDFE R + + ++ T
Sbjct: 266 NIGPTSGIVKLAKELDFEDLRQPHVYSLIVT 296
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
+ + E+ P G+ V + A D D N + + + G + + F ++P +GV+ + L
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-SGEEASRF--FAVEPDTGVVWLRQPL 71
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
D E +S + + + +D+ R + ++V +NDN PTF +
Sbjct: 72 DRETKSEFTVEFSVSDH---QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
+F V+A+DPD G V Y+ + PS F + S G + + Q+LD+E +Y+ V A
Sbjct: 129 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 185
Query: 225 TDRGK 229
TD+ K
Sbjct: 186 TDQDK 190
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 2 ISTREPLDREARSSHELVAEARD-QGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ R+PLDRE +S + D QG R V I V VNDNAP + Q + +
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGGVNDNAPTFHN-QPYSVRI 119
Query: 61 REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
E P GT + A D D G+ ++ YS F ID G++ LD+E
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-----FFAIDSARGIVTVIQELDYE 174
Query: 121 DRSIYRIAVAATD 133
Y++ V ATD
Sbjct: 175 VTQAYQLTVNATD 187
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 61 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 117
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 118 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 177
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN 155
S LD E Y + V A D T + V D+NDN
Sbjct: 178 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN 218
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 35 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 94
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 95 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 153
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 154 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 200
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 8 LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNA 47
LDRE+ ++ LV +A D S+ I+V D+NDNA
Sbjct: 180 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNA 219
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 20/142 (14%)
Query: 1 EISTREPLDREARSSHELVAEARDQGS-----PPRSSRVAVKISVTDVNDNAPELVDPQE 55
+I E LDRE ++ +EL A D+ + PP S+ +K+S D+NDNAP V
Sbjct: 54 DIYAFERLDREKKAEYELTAHIIDRRNNRSLEPP--SKFIIKVS--DINDNAPIFVQKIF 109
Query: 56 DVISVREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIR 112
+ SV E GT V + A D DD +AT++Y I+KG + FT+D SGVI
Sbjct: 110 NG-SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-----YFTVDD-SGVIF 162
Query: 113 T-KSVLDHEDRSIYRIAVAATD 133
T ++ LD E +S Y I V A D
Sbjct: 163 TARADLDRESQSAYEIIVKAKD 184
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 32/149 (21%)
Query: 101 VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLR------VEVLDLND 154
+F + G I LD E ++ Y + D R+ R L ++V D+ND
Sbjct: 45 IFKVQGYDGDIYAFERLDREKKAEYELTAHIID-----RRNNRSLEPPSKFIIKVSDIND 99
Query: 155 NRPTF----------------TSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMK 198
N P F TS + + A DP +A V Y + + N ++
Sbjct: 100 NAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQI----IKGNEYFTV 155
Query: 199 SVSGEICISQ-DLDFESRSSYEFPVVATD 226
SG I ++ DLD ES+S+YE V A D
Sbjct: 156 DDSGVIFTARADLDRESQSAYEIIVKAKD 184
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 2 ISTREPLDREARSSHELVAEA--RDQGSP--PRSSRVAVKISVTDVNDNAPELVDPQEDV 57
I + LDRE R+ + L+A+A RD P P S + + V D+NDN PE +
Sbjct: 58 IHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI---VKVQDINDNPPEFLHEIYHA 114
Query: 58 ISVREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTK 114
+V E GT V++ A D DD G++A + YSIL+G+ F+++ +G+IRT
Sbjct: 115 -NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP-----YFSVEAQTGIIRTA 168
Query: 115 -SVLDHEDRSIYRIAVAATDNG 135
+D E + Y + + A D G
Sbjct: 169 LPNMDREAKEEYHVVIQAKDMG 190
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 80 DGSNATISYSILKGRDTDGYG-VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPS 138
D + I Y IL G +G G +F ID SG I LD E+R+ Y + A D
Sbjct: 30 DSGDGNIKY-ILSG---EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD----- 80
Query: 139 RQTVRLLR------VEVLDLNDNRPTFTS-------------SSLLFKVSAS---DPDCG 176
R T R L V+V D+NDN P F + + +V+AS DP G
Sbjct: 81 RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYG 140
Query: 177 VNAMVNYTLGESPSRTNHFYMKSVSGEICISQ-DLDFESRSSYEFPVVATDRG 228
+A + Y++ E +F +++ +G I + ++D E++ Y + A D G
Sbjct: 141 NSAKLVYSILEGQP---YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMG 190
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ EPLDRE +++ L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFT---QEVFKGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKS 115
V E PGT V+ A D DD NA I+Y+IL + + +FTI+ +GVI +
Sbjct: 117 VMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVT 176
Query: 116 V-LDHEDRSIYRIAVAATD 133
LD E Y + V A D
Sbjct: 177 TGLDRESFPTYTLVVQAAD 195
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G DT GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
+L + V D NDN+P FT + +V+A+D D V NA + YT+
Sbjct: 94 IL-ITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 153 QDPELPDK-NMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
++S PLDREA ++++L E D V + ISV D NDN P + V V
Sbjct: 58 DVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRP-MFKEGPYVGHV 116
Query: 61 REEQPPGTEVVRARAVDKDDGS--NATISYSILKGRDTD-GYGVFTIDPISGVIRT---K 114
E P GT V+R A D DD S NA + Y+ILK T +F IDP G I T
Sbjct: 117 MEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSP 176
Query: 115 SVLDHEDRSI--YRIAVAATDNG 135
+LD E Y + + A D G
Sbjct: 177 VLLDRETMETPKYELVIEAKDMG 199
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 92 KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVL 150
KG D D G+F I+ ISG + LD E + Y++ V TD +G VR L + V+
Sbjct: 40 KGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVR-LDISVI 98
Query: 151 DLNDNRPTFT-------------SSSLLFKVSASDPD--CGVNAMVNYT-LGESPSR--T 192
D NDNRP F + + + +++A D D NA++ Y L ++P++
Sbjct: 99 DQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSP 158
Query: 193 NHFYMKSVSGEIC-----ISQDLDFESRSSYEFPVVATDRG 228
N FY+ G+I + D + YE + A D G
Sbjct: 159 NMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
++S +PLDRE + L A A D + + + I+V D+NDN PE + Q SV
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLH-QVWNGSV 117
Query: 61 REEQPPGTEVVRARAVDKDDGS--NATISYSIL-KGRDTDGYGVFTIDPISG-VIRTKSV 116
E PGT V+ A+D DD + N + Y IL + T +FTI+ +G +I +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 117 LDHEDRSIYRIAVAATD 133
LD E Y + + ATD
Sbjct: 178 LDREKVQQYTLIIQATD 194
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 69 EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
E+VR R+ D+D N ++ YS+ G D G+F I+PISG + LD E + + +
Sbjct: 20 ELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 76
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDP 173
A D NG + ++ + V+D+NDNRP F + + V+A D
Sbjct: 77 RAHAVDINGNQVENPIDIV-INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 174 D--CGVNAMVNY-TLGESPS--RTNHFYMKSVSGEIC-ISQDLDFESRSSYEFPVVATD 226
D +N M+ Y L ++PS N F + + +G+I ++ LD E Y + ATD
Sbjct: 136 DDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 21/145 (14%)
Query: 1 EISTREPLDREARSSHELVAEA--RDQGSP--PRSSRVAVKISVTDVNDNAPELVDPQED 56
+I + LDRE + + L A+A R G P P S + I + D+NDN P +D
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFI---IKIHDINDNEPIFT---KD 109
Query: 57 VIS--VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVI 111
V + V E GT VV+ A D DD G++A + YSIL+G+ F+++ +G+I
Sbjct: 110 VYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP-----YFSVESETGII 164
Query: 112 RTKSV-LDHEDRSIYRIAVAATDNG 135
+T + +D E+R Y++ + A D G
Sbjct: 165 KTALLNMDRENREQYQVVIQAKDMG 189
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 31/174 (17%)
Query: 77 DKDDGSNATISYSILKGRDTDGYG-VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-- 133
D+ DGS + Y IL G DG G +F I+ +G I+ LD E++ +Y + A +
Sbjct: 29 DRGDGS---LKY-ILSG---DGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRR 81
Query: 134 NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSAS---DPDCGV 177
G P + +++ D+NDN P FT + + +V+A+ DP G
Sbjct: 82 TGRPVEPESEFI-IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140
Query: 178 NAMVNYTLGESPSRTNHFYMKSVSGEICIS-QDLDFESRSSYEFPVVATDRGKE 230
+A V Y++ + +F ++S +G I + ++D E+R Y+ + A D G +
Sbjct: 141 SAKVVYSILQGQP---YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQ 191
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 59 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 115
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 116 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 175
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 176 SGLDRESYPTYTLVVQAAD 194
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 33 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 92
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 93 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 151
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 152 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 198
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 69 EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
E+VR R+ D+D N ++ YS+ G D G+F I+PISG + LD E + + +
Sbjct: 20 ELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 76
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDP 173
A D NG + ++ + V+D+NDNRP F + + V+A D
Sbjct: 77 RAHAVDINGNQVENPIDIV-INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 174 D--CGVNAMVNY-TLGESPS--RTNHFYMKSVSGEIC-ISQDLDFESRSSYEFPVVATD 226
D +N M+ Y + ++PS N F + + +G+I ++ LD E Y + ATD
Sbjct: 136 DDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
++S +PLDRE + L A A D + + + I+V D+NDN PE + Q SV
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLH-QVWNGSV 117
Query: 61 REEQPPGTEVVRARAVDKDDGS--NATISYSIL-KGRDTDGYGVFTIDPISG-VIRTKSV 116
E PGT V+ A+D DD + N + Y I+ + T +FTI+ +G +I +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 117 LDHEDRSIYRIAVAATD 133
LD E Y + + ATD
Sbjct: 178 LDREKVQQYTLIIQATD 194
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 118
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 119 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 178
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 179 SGLDRESYPTYTLVVQAAD 197
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 96 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I ++ LD ES +Y V A D E
Sbjct: 155 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 201
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I + + LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I + + LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
V E PGT V++ A D DD NA I+Y+I+ + + +FT++ +GVI
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
S LD E Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
++ + V D NDNRP FT + KVSA+D D V NA + YT+
Sbjct: 94 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFPVVATDRGKE 230
E P + N F + +G I + + LD ES +Y V A D E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGE 199
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 44 NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFT 103
NDN P + Q +V + E P GT V++ A D D GSNA I Y +F
Sbjct: 8 NDNRPVFKEGQVEV-HIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFA 66
Query: 104 IDPISGVIRTKSVLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLN 153
++ +G+I + LD E+ +I+++ V A+D + P+R TV + V D+N
Sbjct: 67 LNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATV---TINVTDVN 114
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 153 NDNRPTFTSSSL-------------LFKVSASDPDCGVNAMVNYTLGE--SPSRTNHFYM 197
NDNRP F + + ++ A+D D G NA + Y G +P+ F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 198 KSVSGEICISQDLDFESRSSYEFPVVATD 226
+ +G I + + LD E + ++ V+A+D
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASD 96
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 21/183 (11%)
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+I + QP +V + D+ +GS ++ KG D D G F I+ +G +
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTG---KGVDQDPKGTFRINENTGSVSVTRT 65
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF-------------TSSS 163
LD E + Y++ V TD + + L V V+D NDNRP F + +
Sbjct: 66 LDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGT 125
Query: 164 LLFKVSASDPD--CGVNAMVNYTL-GESPSR--TNHFYMKSVSGEICISQDLDFESRSSY 218
+ +++A D D NA++ Y + ++P + N FY+ G+I R +
Sbjct: 126 TVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETL 185
Query: 219 EFP 221
E P
Sbjct: 186 ENP 188
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
+S LDRE ++++L E D V +++ V D NDN P + + V
Sbjct: 60 VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRP-IFREGPYIGHVM 118
Query: 62 EEQPPGTEVVRARAVDKDDGS--NATISYSILKGR-DTDGYGVFTIDPISGVIRT---KS 115
E P GT V+R A D DD + NA + Y+I + D +F IDP G I T +
Sbjct: 119 EGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPA 178
Query: 116 VLDHE--DRSIYRIAVAATD 133
+LD E + Y + + A D
Sbjct: 179 LLDRETLENPKYELIIEAQD 198
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 69 EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
E+VR R+ +D N ++ YS+ G D G+F I+PISG + LD E + + +
Sbjct: 22 ELVRIRS-GRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 78
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTF 159
A D NG + ++ + V+D+NDNRP F
Sbjct: 79 RAHAVDINGNQVENPIDIV-INVIDMNDNRPEF 110
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPEL 50
++S +PLDRE + L A A D + + + I+V D+NDN PE
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
+ +PLDREA + + L + A + + I+VTD NDN PE ++V S
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 118
Query: 60 VREEQPPGTEVVRARAVDKDDGSN 83
V E PGT V++ A D DD N
Sbjct: 119 VAEGAVPGTSVMKVSATDADDDVN 142
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G D GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGVN 178
++ + V D NDNRP FT + KVSA+D D VN
Sbjct: 96 IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 44 NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYG-VF 102
NDN+P + + E PGT +++ RA D D G N I Y G T+ +
Sbjct: 8 NDNSPRFEKSVYEA-DLAENSAPGTPILQLRAADLDVGVNGQIEYVF--GAATESVRRLL 64
Query: 103 TIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRP 157
+D SG + +D E+ + R V A D G P + + + + D NDN P
Sbjct: 65 RLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 153 NDNRPTFTSS-------------SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFY-MK 198
NDN P F S + + ++ A+D D GVN + Y G + +
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 199 SVSGEICISQDLDFESRSSYEFPVVATDRGK 229
SG + + +D E + F V+A DRG+
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQ 98
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAP 48
+S +DRE + ARD+G PP++ + V +++ D NDN P
Sbjct: 73 LSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 99 YGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPT 158
+G+F + +G + S+LD E+ + + A D + + LR++VLD+NDN P
Sbjct: 60 FGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119
Query: 159 FT 160
FT
Sbjct: 120 FT 121
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 90/211 (42%), Gaps = 32/211 (15%)
Query: 36 VKISVTDVNDNAPELVD---PQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILK 92
V I V DVND P ++ P + V+ + PP T V +A D D N I Y I+
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQL--NAPPNTPVFTLQARDPDTDHN--IHYFIV- 146
Query: 93 GRDTDGYGVFTIDPISGVIRTKSV----LDHEDRSIYRIAVAATD-NGFPSRQTVRLLRV 147
RD G G F +D SGV+RT+ LD E Y + V A D NG + +
Sbjct: 147 -RDRTG-GRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDDRRFQSTPE 200
Query: 148 EVLDLNDNR--PTFTSSSLLFKV---SASDPD-CGVNAM------VNYTLGESPSRTNHF 195
E L + + P F S ++ D D + A + YTL F
Sbjct: 201 ERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTF 260
Query: 196 YMKSVSGEICISQDLDFES-RSSYEFPVVAT 225
+ SG + ++++LDFE R + + ++ T
Sbjct: 261 NIGPTSGIVKLAKELDFEDLRQPHVYSLIVT 291
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 98 GYGVFTIDPISGVIRTKSVLDHEDR---SIYRIAVAATDN--GFPSRQTVRLLRVEVLDL 152
G G F I P SG+++ LD ED +Y + V AT++ GF T L + V D+
Sbjct: 256 GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF---STSVDLTIRVTDV 312
Query: 153 NDN 155
NDN
Sbjct: 313 NDN 315
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 92 KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
KG D + G+F I+ +G + LD E ++Y++ V TD + + L V V+D
Sbjct: 40 KGVDQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVID 99
Query: 152 LNDNRP 157
NDNRP
Sbjct: 100 QNDNRP 105
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAP 48
+S LDRE + ++L E D V +++ V D NDN P
Sbjct: 59 VSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 32/205 (15%)
Query: 53 PQEDVISVREEQPPGTEVVRARAVDKDDGS-NATISYSILKGRDTDGYGVFTIDPISGVI 111
P ++++ EE GT +V + G + TI S+ +D Y V +DP+ ++
Sbjct: 19 PPATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSL---KDNVDYWVL-LDPVKQML 74
Query: 112 ---RTKSVLDHED-RSIYRIAVAA-TDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF 166
T VLD + +I+ I V N +R+ V D NDN PTF S
Sbjct: 75 FLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYA 134
Query: 167 KVS------------------ASDPDCGVNAMVNYTLG---ESPSRTNHFYMK-SVSGEI 204
V+ A+D D G N + Y + E P+ + F + ++G +
Sbjct: 135 TVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNV 194
Query: 205 CISQDLDFESRSSYEFPVVATDRGK 229
+ + L++E ++ Y + A DR +
Sbjct: 195 VLRKRLNYEDKTRYYVIIQANDRAQ 219
>pdb|2X2U|A Chain A, First Two Cadherin-Like Domains From Human Ret
Length = 246
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 1 EISTREPLDREARSSHELVAEAR-DQGSPPRSSRVAVKISVTDVNDNAPEL 50
E+STR LDRE R +ELVA G+ V ++V D +D+APE
Sbjct: 194 EVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 86 ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
+ YSI +G DT GVF I+ +G ++ LD E + Y + + A + NG +
Sbjct: 38 VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 97
Query: 144 LLRVEVLDLNDN 155
+L + V D NDN
Sbjct: 98 IL-ITVTDQNDN 108
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDN 46
+ EPLDRE +++ L + A + + I+VTD NDN
Sbjct: 64 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 26/95 (27%)
Query: 76 VDKDDGSNATISYSILKGRDTDGYG-VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDN 134
+D+ DGS I Y IL G +G G VFTID +G I LD E+RS Y
Sbjct: 29 MDRGDGS---IKY-ILSG---EGAGIVFTIDDTTGDIHAIQRLDREERSQY--------- 72
Query: 135 GFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS 169
LR + LD RP S + K+
Sbjct: 73 ---------TLRAQALDRRTGRPMEPESEFIIKIQ 98
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 92 KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD 133
KG D D G+F I+ ISG + LD E + Y + V TD
Sbjct: 40 KGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD 81
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 195 FYMKSVSGEICISQDLDFESRSSYEFPVVATD 226
F + +SG++ +++ LD E+ ++YE V TD
Sbjct: 50 FRINEISGDVSVTRPLDREAIANYELEVEVTD 81
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+I + QP +V + D+ +GS ++ KG D D G F I+ +G +
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTG---KGVDQDPKGTFRINENTGSVSVTRT 65
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
LD E + Y++ V TD + + L V V+D
Sbjct: 66 LDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 90 ILKGRDTDGYGVFTIDPISGVIRTKSVL 117
++ G D++G +++IDPI G I K ++
Sbjct: 100 LIGGIDSEGKSIYSIDPIGGAIEEKDIV 127
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
+ + E+ P G+ V + A D D N + + + G + + F ++P +GV+ + L
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-SGEEASRF--FAVEPDTGVVWLRQPL 71
Query: 118 DHEDRSIYRIAVAATDN 134
D E +S + + + +D+
Sbjct: 72 DRETKSEFTVEFSVSDH 88
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 92 KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-NG 135
KG D + G+F I+ SG + LD E Y++ V TD NG
Sbjct: 40 KGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENG 84
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 195 FYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET 231
F + SGE+ +++ LD E+ SY+ V TD +T
Sbjct: 50 FKINENSGEVSVTKALDREAIPSYQLQVETTDENGKT 86
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 140 QTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLG 186
++ RLL L DN+ FT S + K++AS+ ++ LG
Sbjct: 298 ESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILG 344
>pdb|1ZXK|A Chain A, Crystal Structure Of Cadherin8 Ec1 Domain
pdb|1ZXK|B Chain B, Crystal Structure Of Cadherin8 Ec1 Domain
Length = 98
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 77 DKDDGSNATISYSILKGRDTDGYG-VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD 133
D D GS I Y IL G DG G +F I+ I+G I LD E+++ Y + A D
Sbjct: 27 DLDPGSKK-IKY-ILSG---DGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD 79
>pdb|3JYS|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001298690.1) From Bacteroides Vulgatus Atcc 8482 At
2.00 A Resolution
Length = 499
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 46 NAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTID 105
N L D Q D E+P +E+ R + D G + I+ S+ +T+G+ VF
Sbjct: 299 NLVHLFDFQND------EEPKASEIQDKRGIFYDKGRSIDITSSVSGTFETEGWSVFKFS 352
Query: 106 PIS 108
++
Sbjct: 353 NLN 355
>pdb|3TAD|A Chain A, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
pdb|3TAD|B Chain B, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
Length = 297
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSP 28
++ T+ DR + HEL+ EAR +G P
Sbjct: 8 KLGTQAEKDRRLKKKHELLEEARRKGLP 35
>pdb|3TAC|B Chain B, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 334
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSP 28
++ T+ DR + HEL+ EAR +G P
Sbjct: 8 KLGTQAEKDRRLKKKHELLEEARRKGLP 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,575,301
Number of Sequences: 62578
Number of extensions: 262545
Number of successful extensions: 623
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 120
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)