RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8618
(232 letters)
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 186 bits (475), Expect = 1e-58
Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 31/256 (12%)
Query: 1 EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
+I + LDRE ++ + L A+A D + P I V D+NDNAPE ++ +
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLN-GPYHAT 114
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRT-KS 115
V E GT V A D DD G++A + YSIL+G+ F+I+P + +I+T
Sbjct: 115 VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP-----YFSIEPETAIIKTALP 169
Query: 116 VLDHEDRSIYRIAVAATDNG--FPSRQTVRLLRVEVLDLNDNRPTFTSSS---------- 163
+D E + Y + + A D G L V + D+NDN P F S
Sbjct: 170 NMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVV 229
Query: 164 ---LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRS 216
+ +V A+D D G NA +Y + T F + ++ G I + + LDFE++
Sbjct: 230 LGTAIGRVKANDQDIGENAQSSYDI-IDGDGTALFEITSDAQAQDGVIRLRKPLDFETKK 288
Query: 217 SYEFPVVATDRGKETQ 232
SY V A + + +
Sbjct: 289 SYTLKVEAANIHIDPR 304
Score = 127 bits (322), Expect = 9e-36
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 25/193 (12%)
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+ + E P +V D D G + I Y + G +F I+ I+G I
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL-SGDGAGT--IFQINDITGDIHAIKR 62
Query: 117 LDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF--------- 166
LD E+++ Y + A D + ++V D+NDN P F +
Sbjct: 63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122
Query: 167 ----KVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEI-CISQDLDFESRSSY 218
V+A+D D G +A + Y++ +F ++ + I ++D E++ Y
Sbjct: 123 TSVTNVTATDADDPVYGNSAKLVYSI---LEGQPYFSIEPETAIIKTALPNMDREAKEEY 179
Query: 219 EFPVVATDRGKET 231
+ A D G +
Sbjct: 180 LVVIQAKDMGGHS 192
Score = 41.1 bits (97), Expect = 1e-04
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPR-------SSRVAVKISV 40
I R+PLD E + S+ L EA + PR VKI V
Sbjct: 276 IRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 184 bits (468), Expect = 1e-57
Identities = 54/255 (21%), Positives = 85/255 (33%), Gaps = 36/255 (14%)
Query: 1 EISTREPLDREARSSH------ELVAEARDQGSPPRSSRVAVKISVTDVNDNAPE-LVDP 53
+ ++ D E ++ + V I V DVND P + P
Sbjct: 51 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 110
Query: 54 QEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRT 113
V+ PP T V +A D D N Y I++ G F +D SGV+RT
Sbjct: 111 LPMQAVVQLNAPPNTPVFTLQARDPDTDHNIH--YFIVRD---RTGGRFEVDERSGVVRT 165
Query: 114 KSVLDHEDRSIYRIAVAATDNGFPSR----QTVRLLRVEVLDLNDNRPTFTSS------- 162
+ + Y + V A D Q+ R+ ++ P F
Sbjct: 166 RGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIP 224
Query: 163 ------SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRS 216
S + + A + + YTL F + SG + ++++LDFE
Sbjct: 225 ENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 281
Query: 217 S---YEFPVVATDRG 228
Y V AT+
Sbjct: 282 QPHVYSLIVTATEDS 296
Score = 134 bits (340), Expect = 2e-38
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPR----SSRVAVKISVTDVNDNAPELVDPQED 56
+ TR + + L +A DQ S ++S+ AP+ P +
Sbjct: 162 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYE 220
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+ E Q ++++ +A + I Y++ G G F I P SG+++
Sbjct: 221 A-EIPENQKKDSDIISIKAKSFA---DREIRYTLK--AQGQGAGTFNIGPTSGIVKLAKE 274
Query: 117 LDHEDRS---IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN 155
LD ED +Y + V AT++ T L + V D+NDN
Sbjct: 275 LDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315
Score = 120 bits (304), Expect = 3e-33
Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 29/189 (15%)
Query: 66 PGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGV-----FTIDPISGVIRTKSVLDHE 120
R + D + + + K D + + + + +G +R K D+E
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 121 DRS------IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFK------- 167
+ + I N + + + V D+ND P F + L +
Sbjct: 62 ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 121
Query: 168 --------VSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
+ A DPD N + F + SG + F+ Y
Sbjct: 122 PPNTPVFTLQARDPDTDHNIHYFIVRDRTG---GRFEVDERSGVVRTRGTDLFQLDMEYV 178
Query: 220 FPVVATDRG 228
V A D+
Sbjct: 179 LYVKAEDQN 187
Score = 59.7 bits (145), Expect = 7e-11
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 1 EISTREPLDREARSS---HELVAEARDQGSPPRSSRVAVKISVTDVNDNA 47
+ + LD E + L+ A + S+ V + I VTDVNDNA
Sbjct: 268 IVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNA 316
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 187 bits (478), Expect = 9e-57
Identities = 69/251 (27%), Positives = 102/251 (40%), Gaps = 26/251 (10%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ +PLDREA + + L + A + + I+VTD NDN PE SV
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQE-VFEGSV 117
Query: 61 REEQPPGTEVVRARAVDKDDG---SNATISYSILKGR-DTDGYGVFTIDPISGVIRT-KS 115
E PGT V++ A D DD NA I+Y+I+ + +FT++ +GVI S
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS------ 169
LD E Y + V A D T + V D+NDN P F S+ +V
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNA 237
Query: 170 ------ASDPDCGVNAM--VNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRSS 217
+D D YT+ P F + + G + ++ LDFE++
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPD--QQFVVVTDPTTNDGILKTAKGLDFEAKQQ 295
Query: 218 YEFPVVATDRG 228
Y V +
Sbjct: 296 YILHVRVENEE 306
Score = 180 bits (459), Expect = 5e-54
Identities = 62/244 (25%), Positives = 95/244 (38%), Gaps = 23/244 (9%)
Query: 2 ISTREPLDREARSSHELVAEARDQG---SPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
+ T + LD EA+ + L ++ S V + V DVN+ AP + P E +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFM-PAERRV 339
Query: 59 SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
V E+ G E+ A + D + I+Y I RDT + I+P +G I T++ +D
Sbjct: 340 EVPEDFGVGQEITSYTAREPDTFMDQKITYRIW--RDTANW--LEINPETGAIFTRAEMD 395
Query: 119 HED-----RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF------- 166
ED S Y + ATD+G P L + +LD+NDN P ++ F
Sbjct: 396 REDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP 455
Query: 167 -KVSASDPDCGVNAM-VNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
++ DPD N L S + E I Q Y+ +
Sbjct: 456 HIITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKL 515
Query: 225 TDRG 228
D
Sbjct: 516 ADNQ 519
Score = 167 bits (424), Expect = 7e-49
Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 37/256 (14%)
Query: 1 EIST-REPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
IS LDRE+ ++ LV +A D S+ I+V D+NDNAP +P
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV-FNPSTYQGQ 229
Query: 60 VREEQPPGTEVVRARAVDKDDGSNA--TISYSILKGRDTDGYGVFTI--DPIS--GVIRT 113
V E + + D D + Y+++ D F + DP + G+++T
Sbjct: 230 V-PENEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPD----QQFVVVTDPTTNDGILKT 284
Query: 114 KSVLDHEDRSIYRIAVAATDNGF---PSRQTVRLLRVEVLDLNDNRPTFTSSS------- 163
LD E + Y + V + + + V+V+D+N+ P F +
Sbjct: 285 AKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPE 343
Query: 164 ------LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES--- 214
+ +A +PD ++ + Y + + N + +G I ++D E
Sbjct: 344 DFGVGQEITSYTAREPDTFMDQKITYRIWRDTA--NWLEINPETGAIFTRAEMDREDAEH 401
Query: 215 --RSSYEFPVVATDRG 228
S+Y ++ATD G
Sbjct: 402 VKNSTYVALIIATDDG 417
Score = 135 bits (342), Expect = 3e-37
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 22/192 (11%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
IS E + G + + + YSI +G D GVF I+ +G ++
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
LD E + Y + A + + + + + V D NDNRP FT +
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 164 LLFKVSASDPDCGV---NAMVNYTLGE---SPSRTNHFYMKSVSGEICI-SQDLDFESRS 216
+ KVSA+D D V NA + YT+ N F + +G I + + LD ES
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 217 SYEFPVVATDRG 228
+Y V A D
Sbjct: 186 TYTLVVQAADLQ 197
Score = 133 bits (337), Expect = 2e-36
Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 16/169 (9%)
Query: 1 EISTREPLDREA-----RSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQE 55
I TR +DRE S++ + A D GSP + + + + DVNDNAP
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRN- 445
Query: 56 DVISVREEQPPGTEVVRARAVDKDDGSNAT-ISYSILKGRDTDGYGVFTIDPISGVIRTK 114
+ + P + +D D N + + + G + +
Sbjct: 446 --MQFCQRNPQPHIIT---ILDPDLPPNTSPFTAELTHG--ASVNWTIEYNDAAQESLIL 498
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSS 163
+ Y+I + DN + T L V V D +
Sbjct: 499 QPRKDLEIGEYKIHLKLADNQNKDQVTT--LDVHVCDCEGTVNNCMKAH 545
Score = 51.2 bits (123), Expect = 8e-08
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 163 SLLFKVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
+ + V Y++ G F ++ +G + ++Q LD E+ + Y
Sbjct: 16 EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI 75
Query: 220 FPVVATDRGKE 230
A E
Sbjct: 76 LYSHAVSSNGE 86
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 184 bits (470), Expect = 1e-56
Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 36/255 (14%)
Query: 1 EISTREPLDREARSSHE------LVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQ 54
+ ++ D E + ++ + V I V DVND P ++
Sbjct: 56 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 115
Query: 55 EDV-ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRT 113
+ V+ PP T V +A D D N I Y I++ G F +D SGV+RT
Sbjct: 116 LPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRD---RTGGRFEVDERSGVVRT 170
Query: 114 KSVLDHEDRSIYRIAVAATDNGFP----SRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV- 168
+ + Y + V A D Q+ R+ ++ P F S ++
Sbjct: 171 RGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIP 229
Query: 169 ------------SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRS 216
A + + YTL F + SG + ++++LDFE
Sbjct: 230 ENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 286
Query: 217 S---YEFPVVATDRG 228
Y V AT+
Sbjct: 287 QPHVYSLIVTATEDS 301
Score = 174 bits (442), Expect = 2e-52
Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 36/250 (14%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPR----SSRVAVKISVTDVNDNAPELVDPQED 56
+ TR + + L +A DQ S ++S+ AP+ P +
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYE 225
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+ E Q ++++ +A D I Y++ G G F I P SG+++
Sbjct: 226 A-EIPENQKKDSDIISIKAKSFADRE---IRYTLK--AQGQGAGTFNIGPTSGIVKLAKE 279
Query: 117 LDHEDRS---IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSS---------- 163
LD ED +Y + V AT++ T L + V D+NDN P F
Sbjct: 280 LDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDI 338
Query: 164 ----LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES-RSSY 218
+ +V A D D G NA + Y + + HF + S +G I ++ LD ++ + Y
Sbjct: 339 PLGTSILRVKAMDSDSGSNAEIEYLVSDD-----HFAVDS-NGIIVNNKQLDADNNNAYY 392
Query: 219 EFPVVATDRG 228
EF V A D+G
Sbjct: 393 EFIVTAKDKG 402
Score = 140 bits (356), Expect = 7e-40
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 1 EISTREPLDREARSS---HELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDV 57
+ + LD E + L+ A + S S+ V + I VTDVNDNAP+ P
Sbjct: 273 IVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQA 331
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
+V E+ P GT ++R +A+D D GSNA I Y + D + F +D +G+I L
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS-----DDH--FAVDS-NGIIVNNKQL 383
Query: 118 DHED-RSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
D ++ + Y V A D G P + V +RV +
Sbjct: 384 DADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 125 bits (315), Expect = 5e-34
Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 32/195 (16%)
Query: 60 VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGV-----FTIDPISGVIRTK 114
V P + + D + + + K D + + + + +G +R K
Sbjct: 4 VTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 115 SVLDHEDRS------IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS------ 162
D+E+ + I N + + + V D+ND P F +
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 163 ---------SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFE 213
+ +F + A DPD N + F + SG + F+
Sbjct: 121 VVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRT---GGRFEVDERSGVVRTRGTDLFQ 177
Query: 214 SRSSYEFPVVATDRG 228
Y V A D+
Sbjct: 178 LDMEYVLYVKAEDQN 192
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 182 bits (463), Expect = 2e-54
Identities = 68/253 (26%), Positives = 103/253 (40%), Gaps = 27/253 (10%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
++S +PLDRE + L A A D + + + I+V D+NDN PE Q SV
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF-LHQVWNGSV 117
Query: 61 REEQPPGTEVVRARAVDKDD--GSNATISYSILKGR-DTDGYGVFTIDPISGVIRT-KSV 116
E PGT V+ A+D DD N + Y IL T +FTI+ +G I T +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 117 LDHEDRSIYRIAVAATDNGFP---SRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV----- 168
LD E Y + + ATD + V D+NDN P FT+ + +V
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV 237
Query: 169 -------SASDPDCGVNAM--VNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESR 215
+ +D D Y + F + S G + + + +DFE+
Sbjct: 238 DVIVANLTVTDKDQPHTPAWNAAYRISGGDPT-GRFAILTDPNSNDGLVTVVKPIDFETN 296
Query: 216 SSYEFPVVATDRG 228
+ V A ++
Sbjct: 297 RMFVLTVAAENQV 309
Score = 173 bits (441), Expect = 3e-51
Identities = 65/249 (26%), Positives = 101/249 (40%), Gaps = 28/249 (11%)
Query: 2 ISTREPLDREARSSHELVAEARDQG------SPPRSSRVAVKISVTDVNDNAPELVDPQE 55
++ +P+D E L A +Q P S V ++V DVN+N P P
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYF-APNP 342
Query: 56 DVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
+I E GT + A D D I Y+ L D + IDP++G I T +
Sbjct: 343 KIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL--SDPANW--LKIDPVNGQITTIA 398
Query: 116 VLDHED----RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF----- 166
VLD E +IY A+DNG P L++ +LD+NDN P
Sbjct: 399 VLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPE 458
Query: 167 ----KVSASDPDCGVNAM-VNYTL-GESPSRTNHFYMKSVSGEIC-ISQDLDFESRSSYE 219
++A D D NA + L + ++ + ++G+ ++ + F YE
Sbjct: 459 PNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYE 518
Query: 220 FPVVATDRG 228
P++ TD G
Sbjct: 519 VPIIITDSG 527
Score = 168 bits (428), Expect = 2e-49
Identities = 67/261 (25%), Positives = 99/261 (37%), Gaps = 41/261 (15%)
Query: 1 EIST-REPLDREARSSHELVAEARDQGSPP---RSSRVAVKISVTDVNDNAPELVDPQED 56
+I T LDRE + L+ +A D P S+ I+VTDVNDN PE
Sbjct: 170 DIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEF--TAMT 227
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNA--TISYSILKGRDTDGYGVFTIDPIS----GV 110
E V DKD +Y I G D G F I G+
Sbjct: 228 FYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGG---DPTGRFAILTDPNSNDGL 284
Query: 111 IRTKSVLDHEDRSIYRIAVAATDNGF------PSRQTVRLLRVEVLDLNDNRPTFTSSS- 163
+ +D E ++ + VAA + Q+ + V V+D+N+N P F +
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPK 343
Query: 164 ------------LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLD 211
+L ++A DPD + + YT P+ N + V+G+I LD
Sbjct: 344 IIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPA--NWLKIDPVNGQITTIAVLD 401
Query: 212 FES----RSSYEFPVVATDRG 228
ES + Y +A+D G
Sbjct: 402 RESPNVKNNIYNATFLASDNG 422
Score = 145 bits (369), Expect = 5e-41
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 10/168 (5%)
Query: 1 EISTREPLDREA----RSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED 56
+I+T LDRE+ + + A D G PP S ++I + D+NDNAP+++ +
Sbjct: 393 QITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQE-- 450
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVI-RTKS 115
E P + A+D D NA L +TI+ ++G +
Sbjct: 451 -AETCETPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNL 507
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSS 163
+ + IY + + TD+G P + + +LRV+V + N
Sbjct: 508 KIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHH 555
Score = 139 bits (353), Expect = 1e-38
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 21/191 (10%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
I++ E G + D N ++ YS+ G D G+F I+PISG +
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
LD E + + + A D + + + V+D+NDNRP F +
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 164 LLFKVSASDPD--CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRSS 217
+ V+A D D +N M+ Y + S N F + + +G+I ++ LD E
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 218 YEFPVVATDRG 228
Y + ATD
Sbjct: 186 YTLIIQATDME 196
Score = 53.5 bits (129), Expect = 1e-08
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 167 KVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVV 223
++ D N + Y++ G T F + +SG++ +++ LD E + +
Sbjct: 20 ELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAH 79
Query: 224 ATDRGKE 230
A D
Sbjct: 80 AVDINGN 86
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 179 bits (457), Expect = 1e-53
Identities = 66/247 (26%), Positives = 96/247 (38%), Gaps = 22/247 (8%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ PLDRE + L + A + P + + I+V D NDN P+ SV
Sbjct: 65 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQD-VFRGSV 123
Query: 61 REEQPPGTEVVRARAVDKDD---GSNATISYSILKGR-DTDGYGVFTIDPISGVIRTKSV 116
RE PGT+V+ A D+DD N +SYSILK + +FTI+ +GVI
Sbjct: 124 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 183
Query: 117 -LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS------ 169
LD E Y + V ATD +++ D NDN P F + V
Sbjct: 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGF 243
Query: 170 ------ASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRSSYE 219
+D D + F + +S G + ++ LDFE R Y
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 303
Query: 220 FPVVATD 226
+ +
Sbjct: 304 LQITVEN 310
Score = 176 bits (449), Expect = 2e-52
Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 23/243 (9%)
Query: 2 ISTREPLDREARSSHELVAEARDQ---GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
++T + LD E R + L + P +S V ++V DVN+ P V P +
Sbjct: 288 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFV-PAVSRV 345
Query: 59 SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
V E+ G +++ A D D +SY I D + T++ +G++ LD
Sbjct: 346 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG--NDPARW--LTVNKDNGIVTGNGNLD 401
Query: 119 HEDR----SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF-------- 166
E + Y + + TD+G L + VLD+NDN P +
Sbjct: 402 RESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ 461
Query: 167 KVSASDPDCGVNAMV-NYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
++ SD D N +L G + + Y V+ +
Sbjct: 462 VLTISDADIPPNTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 520
Query: 226 DRG 228
D
Sbjct: 521 DAQ 523
Score = 169 bits (429), Expect = 1e-49
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 34/254 (13%)
Query: 1 EIST-REPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
IS LDRE + L +A D S I +TD NDNAP + +
Sbjct: 177 VISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF--DPKTYTA 234
Query: 60 VREEQPPGTEVVRARAVDKD-DGSNATISYSILKGRDTDGYGVFTIDPI----SGVIRTK 114
+ E G EV R D D G+ A + ++ + G F I G++ T
Sbjct: 235 LVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQGILTTA 291
Query: 115 SVLDHEDRSIYRIAVAATD---NGFPSRQTVRLLRVEVLDLNDNRPTFTSSS-------- 163
LD E R Y + + + P + + V V D+N+ P F +
Sbjct: 292 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSED 350
Query: 164 -----LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESR--- 215
+ + A DPD ++Y +G P+ + +G + + +LD ES
Sbjct: 351 LSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVK 408
Query: 216 -SSYEFPVVATDRG 228
++Y ++ TD G
Sbjct: 409 NNTYTVIMLVTDDG 422
Score = 132 bits (335), Expect = 3e-36
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 24/192 (12%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
+S E P +V + + + YSI +G D GVF I+ +G +
Sbjct: 15 VSENERGPFPKRLV---QIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 71
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
LD E+ Y ++ A + + + V+D NDNRP FT +
Sbjct: 72 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 131
Query: 164 LLFKVSASDPD---CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRS 216
+ VSA+D D +N +++Y++ + N F + +G I I LD E
Sbjct: 132 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFP 191
Query: 217 SYEFPVVATDRG 228
Y V ATD
Sbjct: 192 EYTLTVQATDLE 203
Score = 125 bits (315), Expect = 2e-33
Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 16/164 (9%)
Query: 1 EISTREPLDREAR----SSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED 56
++ LDRE+ +++ ++ D G + + + V DVNDN P
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPS---PR 449
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNA-TISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
V ++ ++ P + D D N S+ G D G S
Sbjct: 450 VFTMCDQNPEPQVLT---ISDADIPPNTYPYKVSLSHGSDL---TWKAELDSKGTSMLLS 503
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
+ Y I V +D + TV + V
Sbjct: 504 PTQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIKC 545
Score = 47.3 bits (113), Expect = 2e-06
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 168 VSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
+ + V Y++ G F ++ +G + +++ LD E Y A
Sbjct: 27 LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHA 86
Query: 225 TDRGKE 230
Sbjct: 87 VSENGS 92
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 179 bits (456), Expect = 3e-52
Identities = 67/247 (27%), Positives = 97/247 (39%), Gaps = 22/247 (8%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ PLDRE + L + A + P + + I+V D NDN P+ SV
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKF-TQDVFRGSV 272
Query: 61 REEQPPGTEVVRARAVDKDD---GSNATISYSILKGR-DTDGYGVFTIDPISGVIRTKSV 116
RE PGT+V+ A D+DD N +SYSILK + +FTI+ +GVI
Sbjct: 273 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 332
Query: 117 -LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV------- 168
LD E Y + V ATD +++ D NDN P F + V
Sbjct: 333 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGF 392
Query: 169 -----SASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRSSYE 219
S +D D + F + +S G + ++ LDFE R Y
Sbjct: 393 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 452
Query: 220 FPVVATD 226
+ +
Sbjct: 453 LQITVEN 459
Score = 172 bits (438), Expect = 1e-49
Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 23/243 (9%)
Query: 2 ISTREPLDREARSSHELVAEARDQ---GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
++T + LD E R + L + P +S V ++V DVN+ P P +
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFF-VPAVSRV 494
Query: 59 SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
V E+ G +++ A D D +SY I G D + T++ +G++ LD
Sbjct: 495 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPARW--LTVNKDNGIVTGNGNLD 550
Query: 119 HEDR----SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF-------- 166
E + Y + + TD+G L + VLD+NDN P +
Sbjct: 551 RESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ 610
Query: 167 KVSASDPDCGVNAM-VNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
++ SD D N +L G + + Y V+ +
Sbjct: 611 VLTISDADIPPNTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669
Query: 226 DRG 228
D
Sbjct: 670 DAQ 672
Score = 151 bits (382), Expect = 4e-42
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 26/246 (10%)
Query: 8 LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED----VISVREE 63
R + S + ++ S + + K+ V + L + D I V E
Sbjct: 108 DARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSEN 167
Query: 64 QPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDR 122
+ G R + + + YSI +G D GVF I+ +G + LD E+
Sbjct: 168 ER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEY 226
Query: 123 SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------SLLFKVS 169
Y ++ A + + + V+D NDNRP FT + + VS
Sbjct: 227 DKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVS 286
Query: 170 ASDPD---CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPV 222
A+D D +N +++Y++ + N F + +G I I LD E Y V
Sbjct: 287 ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTV 346
Query: 223 VATDRG 228
ATD
Sbjct: 347 QATDLE 352
Score = 119 bits (299), Expect = 4e-31
Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 16/167 (9%)
Query: 1 EISTREPLDREAR----SSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED 56
++ LDRE+ +++ ++ D G + + + V DVNDN P
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPS---PR 598
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNA-TISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
V ++ ++ P + D D N S+ G D G S
Sbjct: 599 VFTMCDQNPEPQVLT---ISDADIPPNTYPYKVSLSHGSDLTW---KAELDSKGTSMLLS 652
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS 162
+ Y I V +D + TV + V
Sbjct: 653 PTQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIKCQEK 697
Score = 111 bits (278), Expect = 4e-28
Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 24/233 (10%)
Query: 22 ARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG 81
A V DV+ P + R E G ++ + D
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68
Query: 82 SNATISYSILKGR---DTDGYGVFTIDPISGVIRTKSVLDHEDR-SIYRIAVAATDNGFP 137
+ + R D + T S D IAVA+ +
Sbjct: 69 KHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSG 128
Query: 138 SRQTVRLLRVEVLDLNDNRPTFTSS-----------------SLLFKVSASDPDCGVNAM 180
R ++ VL + ++ +
Sbjct: 129 EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNK 188
Query: 181 VNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKE 230
V Y++ G F ++ +G + +++ LD E Y A
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGS 241
Score = 48.0 bits (114), Expect = 1e-06
Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 22/116 (18%)
Query: 130 AATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS--------------SLLFKVSASDPDC 175
A+ ++++ D++ +P F+S+ L KV+ SD
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT 67
Query: 176 GVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET 231
+ Y +G+ + F + G + + + + + + K +
Sbjct: 68 RKH--GLYDVGD-----SRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHS 115
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 161 bits (411), Expect = 4e-50
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 44 NDNAPELVDPQ-EDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVF 102
+ P + + + + E+ P G+ V + A D D N + + + + F
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGE---EASRFF 55
Query: 103 TIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS 162
++P +GV+ + LD E +S + + + +D+ + V ++V D+NDN PTF +
Sbjct: 56 AVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKV---NIQVGDVNDNAPTFHNQ 112
Query: 163 SL-------------LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQD 209
+F V+A+DPD G V Y+ + F + S G + + Q+
Sbjct: 113 PYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP---SPFFAIDSARGIVTVIQE 169
Query: 210 LDFESRSSYEFPVVATDRGK 229
LD+E +Y+ V ATD+ K
Sbjct: 170 LDYEVTQAYQLTVNATDQDK 189
Score = 150 bits (381), Expect = 1e-45
Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 10/156 (6%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ R+PLDRE +S + D V I V DVNDNAP Q + +
Sbjct: 63 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPT-FHNQPYSVRI 118
Query: 61 REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
E P GT + A D D G+ ++ YS F ID G++ LD+E
Sbjct: 119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-----FFAIDSARGIVTVIQELDYE 173
Query: 121 DRSIYRIAVAATDNGFPSR-QTVRLLRVEVLDLNDN 155
Y++ V ATD T+ L + + D+ D
Sbjct: 174 VTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 147 bits (373), Expect = 2e-44
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSP-PRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
I + LDRE R+ + L+A+A D+ + P + V D+NDN PE + +
Sbjct: 57 NIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHA-N 115
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRT-KS 115
V E GT V++ A D DD G++A + YSIL+G+ F+++ +G+IRT
Sbjct: 116 VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP-----YFSVEAQTGIIRTALP 170
Query: 116 VLDHEDRSIYRIAVAATDNG--FPSRQTVRLLRVEVLDLNDNRP 157
+D E + Y + + A D G + + + D +
Sbjct: 171 NMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 130 bits (328), Expect = 1e-37
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 25/193 (12%)
Query: 57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+ E P +V D D G + I Y + G +F ID SG I
Sbjct: 8 FFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYIL-SGEGAGT--IFVIDDKSGNIHATKT 63
Query: 117 LDHEDRSIYRIAVAATDNGFP-SRQTVRLLRVEVLDLNDNRPTFTSS------------- 162
LD E+R+ Y + A D + V+V D+NDN P F
Sbjct: 64 LDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123
Query: 163 SLLFKVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQ-DLDFESRSSY 218
+ + +V+ASD D G +A + Y++ E +F +++ +G I + ++D E++ Y
Sbjct: 124 TSVIQVTASDADDPTYGNSAKLVYSILEG---QPYFSVEAQTGIIRTALPNMDREAKEEY 180
Query: 219 EFPVVATDRGKET 231
+ A D G
Sbjct: 181 HVVIQAKDMGGHM 193
Score = 65.8 bits (161), Expect = 2e-13
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 1 EISTREP-LDREARSSHELVAEARDQGS--PPRSSRVAVKISVTDVNDNAPE 49
I T P +DREA+ + +V +A+D G S V I++TD + +
Sbjct: 164 IIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 144 bits (365), Expect = 2e-43
Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+ +PLDREA + + L + A + + I+VTD NDN PE + SV
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEF-TQEVFEGSV 117
Query: 61 REEQPPGTEVVRARAVDKDDGS---NATISYSILKGR-DTDGYGVFTIDPISGVIRT-KS 115
E PGT V++ A D DD NA I+Y+I+ + +FT++ +GVI S
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
LD E Y + V A D T + V D
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 142 bits (359), Expect = 2e-42
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 22/192 (11%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
IS E + G + + + YSI +G D GVF I+ +G ++
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
LD E + Y + A + + + + + V D NDNRP FT +
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 164 LLFKVSASDPDCGV---NAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRS 216
+ KVSA+D D V NA + YT+ N F + +G I ++ LD ES
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 217 SYEFPVVATDRG 228
+Y V A D
Sbjct: 186 TYTLVVQAADLQ 197
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 142 bits (360), Expect = 1e-42
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 21/191 (10%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
I++ E G + D N ++ YS+ G D G+F I+PISG +
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
LD E + + + A D + + + V+D+NDNRP F +
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 164 LLFKVSASDPD--CGVNAMVNYTL---GESPSRTNHFYMKSVSGEI-CISQDLDFESRSS 217
+ V+A D D +N M+ Y + S N F + + +G+I ++ LD E
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 218 YEFPVVATDRG 228
Y + ATD
Sbjct: 186 YTLIIQATDME 196
Score = 138 bits (349), Expect = 6e-41
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
++S +PLDRE + L A A D + + + I+V D+NDN PE + + SV
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNG-SV 117
Query: 61 REEQPPGTEVVRARAVDKDD--GSNATISYSILKGR-DTDGYGVFTIDPISGVIRT-KSV 116
E PGT V+ A+D DD N + Y IL T +FTI+ +G I T +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 117 LDHEDRSIYRIAVAATDNGFP---SRQTVRLLRVEVLD 151
LD E Y + + ATD + V D
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 139 bits (352), Expect = 5e-41
Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 28/183 (15%)
Query: 1 EISTREPLDREARSSHEL--------------VAEARDQGSPPRSSRVAVKISVTDVNDN 46
+ + LD + + ++ + N +
Sbjct: 66 LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125
Query: 47 APELVDPQEDVI---------SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTD 97
P + + +RE +PPGT + +++Y +L+G
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEG-- 183
Query: 98 GYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLNDNR 156
F P S + T+ LD E R Y + T G + V V D +D+
Sbjct: 184 --LPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSA 241
Query: 157 PTF 159
P F
Sbjct: 242 PEF 244
Score = 120 bits (303), Expect = 7e-34
Identities = 33/212 (15%), Positives = 52/212 (24%), Gaps = 43/212 (20%)
Query: 58 ISVREEQPPGTEV--VRARAVDKDDGSNATISYSILKGRDTDGY--GVFTIDPISGVIRT 113
+ +Q GT + V A ++ + + + T + I +G++
Sbjct: 10 EKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYL 69
Query: 114 KSVLDHEDRSIYR--------------IAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
+ LDH + ++ T Q RV N + P
Sbjct: 70 QRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPAC 129
Query: 160 TSSSLLF-----------------------KVSASDPDCGVNAMVNYTLGESPSRTNHFY 196
+S V Y L E F
Sbjct: 130 SSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEG--LPFR 187
Query: 197 MKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
S E+ LD E R YE V T
Sbjct: 188 SAPDSLEVSTRWALDREQREKYELVAVCTVHA 219
Score = 70.3 bits (172), Expect = 9e-15
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1 EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTDVNDNAPELVD 52
E+STR LDRE R +ELVA G+ V ++V D +D+APE +
Sbjct: 194 EVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFEN 246
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 137 bits (346), Expect = 1e-40
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 1 EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
+I E LDRE ++ +EL A D+ + I V+D+NDNAP V + S
Sbjct: 54 DIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNG-S 112
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
V E GT V + A D DD +AT++Y I+KG + FT+D + ++
Sbjct: 113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-----YFTVDDSGVIFTARAD 167
Query: 117 LDHEDRSIYRIAVAATDN-GFPSRQTVRLLRVEVLD 151
LD E +S Y I V A D G + + + + D
Sbjct: 168 LDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 128 bits (324), Expect = 3e-37
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 29/190 (15%)
Query: 58 ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
+ +REE P V + + N Y I +F + G I
Sbjct: 7 MHIREEIDSPLPHHVGKLTS----SVGNKNAMYIIEGE---SANTIFKVQGYDGDIYAFE 59
Query: 116 VLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTSS------------ 162
LD E ++ Y + D S + ++V D+NDN P F
Sbjct: 60 RLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119
Query: 163 -SLLFKVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSY 218
+ + KV+A D D +A V Y + + +F + DLD ES+S+Y
Sbjct: 120 GTSVTKVTAEDADDPTVAGHATVTYQIIKG---NEYFTVDDSGVIFTARADLDRESQSAY 176
Query: 219 EFPVVATDRG 228
E V A D
Sbjct: 177 EIIVKAKDAL 186
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 134 bits (339), Expect = 2e-39
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 1 EISTREPLDREARSSHELVAEARDQGS-PPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
+I + LDRE + + L A+A ++ + P I + D+NDN P +
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTA-T 114
Query: 60 VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
V E GT VV+ A D DD G++A + YSIL+G+ F+++ +G+I+T +
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP-----YFSVESETGIIKTALL 169
Query: 117 -LDHEDRSIYRIAVAATDNG--FPSRQTVRLLRVEVLD 151
+D E+R Y++ + A D G + + + D
Sbjct: 170 NMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 130 bits (328), Expect = 9e-38
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 60 VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
+ E + V D+D G + ++ Y + +F I+ +G I+ LD
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRG-DGSLKYIL---SGDGAGDLFIINENTGDIQATKRLDR 65
Query: 120 EDRSIYRIAVAATDNG-FPSRQTVRLLRVEVLDLNDNRPTFTSS-------------SLL 165
E++ +Y + A + + +++ D+NDN P FT + +
Sbjct: 66 EEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV 125
Query: 166 FKVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFP 221
+V+A+D D G +A V Y++ + +F ++S +G I ++D E+R Y+
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQG---QPYFSVESETGIIKTALLNMDRENREQYQVV 182
Query: 222 VVATDRG 228
+ A D G
Sbjct: 183 IQAKDMG 189
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 134 bits (338), Expect = 3e-39
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
+S LDRE ++++L E D V +++ V D NDN P + + V
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREG-PYIGHV 117
Query: 61 REEQPPGTEVVRARAVDKDD--GSNATISYSILKG-RDTDGYGVFTIDPISGVIRT---K 114
E P GT V+R A D DD NA + Y+I + D +F IDP G I T
Sbjct: 118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSP 177
Query: 115 SVLDHE--DRSIYRIAVAATDNG--FPSRQTVRLLRVEVLD 151
++LD E + Y + + A D + + D
Sbjct: 178 ALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 132 bits (334), Expect = 1e-38
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
I + QP +V + D+ +GS ++ + D D G F I+ +G + L
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGV---DQDPKGTFRINENTGSVSVTRTL 66
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------SL 164
D E + Y++ V TD + + L V V+D NDNRP F +
Sbjct: 67 DRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126
Query: 165 LFKVSASDPDC--GVNAMVNYTLGE---SPSRTNHFYMKSVSGEICI---SQDLDFESR- 215
+ +++A D D NA++ Y + + N FY+ G+I LD E+
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186
Query: 216 -SSYEFPVVATDRG 228
YE + A D
Sbjct: 187 NPKYELIIEAQDMA 200
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 118 bits (299), Expect = 2e-34
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 38 ISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTD 97
S + NDN+P + + E PGT +++ RA D D G N I Y +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEA-DLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATE-S 59
Query: 98 GYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRP 157
+ +D SG + +D E+ + R V A D G P + + + + D NDN P
Sbjct: 60 VRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 89.5 bits (223), Expect = 4e-23
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 147 VEVLDLNDNRPTFTSS-------------SLLFKVSASDPDCGVNAMVNYTLGESPSRTN 193
NDN P F S + + ++ A+D D GVN + Y G +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 194 H-FYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
+ SG + + +D E + F V+A DRG
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRG 97
Score = 68.7 bits (169), Expect = 3e-15
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAP 48
+S +DRE + ARD+G PP++ + V +++ D NDN P
Sbjct: 72 WLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 109 bits (275), Expect = 4e-31
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 47 APELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTID 105
+ V P I++ E G + N ++ YS+ G D G+F I+
Sbjct: 1 GSDWVIPP---INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIIN 56
Query: 106 PISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
PISG + LD E + + + A D + + + V+D+NDNRP F
Sbjct: 57 PISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 71.1 bits (175), Expect = 2e-16
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPE 49
++S +PLDRE + L A A D + + + I+V D+NDN PE
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPE 109
Score = 56.5 bits (137), Expect = 7e-11
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 163 SLLFKVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
++ N + Y++ G T F + +SG++ +++ LD E + +
Sbjct: 18 PFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH 77
Query: 220 FPVVATDRG 228
A D
Sbjct: 78 LRAHAVDIN 86
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 108 bits (272), Expect = 2e-30
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 38 ISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTD 97
S + NDN P + Q +V + E P GT V++ A D D GSNA I Y
Sbjct: 2 SSGSSGNDNRPVFKEGQVEV-HIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPA 60
Query: 98 GYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLN 153
+F ++ +G+I + LD E+ +I+++ V A+D + + + V D+N
Sbjct: 61 TKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARAT--VTINVTDVN 114
Score = 87.1 bits (217), Expect = 3e-22
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 147 VEVLDLNDNRPTFTSS-------------SLLFKVSASDPDCGVNAMVNYTLGE--SPSR 191
NDNRP F + + ++ A+D D G NA + Y G +P+
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 192 TNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
F + + +G I + + LD E + ++ V+A+D
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGS 98
Score = 52.1 bits (126), Expect = 3e-09
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVN 44
I+ + LDRE + H++ A D S P + V + VTDVN
Sbjct: 73 LITVQRSLDREETAIHKVTVLASDGSSTPARATVTIN--VTDVN 114
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 107 bits (269), Expect = 5e-30
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 58 ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTK 114
+++RE + + + + D + I+Y KG +G+F + +G +
Sbjct: 17 VALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFT 160
S+LD E+ + + A D + + LR++VLD+NDN P FT
Sbjct: 76 SILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFT 121
Score = 69.3 bits (170), Expect = 2e-15
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPE 49
E++ LDRE L A D + ++I V D+NDN P
Sbjct: 71 ELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119
Score = 50.4 bits (121), Expect = 2e-08
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 170 ASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATD 226
SD + Y G + F +GE+ ++ LD E + A D
Sbjct: 35 HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALD 94
Query: 227 RG 228
Sbjct: 95 AR 96
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 86.7 bits (215), Expect = 3e-22
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 58 ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
I + E Q P +V + D+ +GS ++ + D D G F I+ +G +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGV---DQDPKGTFRINENTGSVSVTR 64
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
LD E + Y++ V TD + + L V V+D
Sbjct: 65 TLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 58.1 bits (141), Expect = 1e-11
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPV 222
+ KV SD G + + + F + +G + +++ LD E+ ++Y+ V
Sbjct: 20 RDVGKVVDSDRPEGSKFRLTGKGVDQDPK-GTFRINENTGSVSVTRTLDRETIATYQLYV 78
Query: 223 VATDRG 228
TD
Sbjct: 79 ETTDAS 84
Score = 50.8 bits (122), Expect = 6e-09
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
+S LDRE ++++L E D V +++ V D
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 85.9 bits (213), Expect = 5e-22
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 58 ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
IS+ E Q P V R D+ GS + + D + G+F I+ SG +
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGV---DQEPKGIFKINENSGEVSVTK 63
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
LD E Y++ V TD + + L + V+D
Sbjct: 64 ALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 57.4 bits (139), Expect = 2e-11
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPV 222
++ +V SD G + + + F + SGE+ +++ LD E+ SY+ V
Sbjct: 19 KIVGRVVVSDRIPGSKIKLYGKGVDQEPK-GIFKINENSGEVSVTKALDREAIPSYQLQV 77
Query: 223 VATDRG 228
TD
Sbjct: 78 ETTDEN 83
Score = 50.8 bits (122), Expect = 8e-09
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
E+S + LDREA S++L E D+ V ++I V D
Sbjct: 58 EVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 84.4 bits (209), Expect = 2e-21
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
IS E + G + + + YSI +G DT GVF I+ +G ++
Sbjct: 11 ISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 69
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
LD E + Y + A + + + + + V D
Sbjct: 70 LDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 52.0 bits (125), Expect = 3e-09
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
+ EPLDRE +++ L + A + + I+VTD
Sbjct: 63 WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 48.1 bits (115), Expect = 8e-08
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 167 KVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVV 223
+ + V Y++ G F ++ +G + +++ LD E ++Y
Sbjct: 24 NLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSH 83
Query: 224 ATDRG 228
A
Sbjct: 84 AVSSN 88
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 79.4 bits (196), Expect = 1e-19
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 58 ISVREEQPP--GTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
I + E Q P V + + +G+ +S + D D G+F I+ ISG +
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGV---DQDPKGIFRINEISGDVSVTR 63
Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
LD E + Y + V TD L + V+D
Sbjct: 64 PLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 53.6 bits (129), Expect = 8e-10
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
+ KV S+ G ++ + + F + +SG++ +++ LD E+ ++YE V
Sbjct: 21 VGKVIRSEGTEGAKFRLSGKGVDQDPK-GIFRINEISGDVSVTRPLDREAIANYELEVEV 79
Query: 225 TDRG 228
TD
Sbjct: 80 TDLS 83
Score = 49.7 bits (119), Expect = 2e-08
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
++S PLDREA +++EL E D V + ISV D
Sbjct: 58 DVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 73.6 bits (181), Expect = 2e-17
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 58 ISVREEQ-PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
V EE V D D G + +I Y + VFTID +G I
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAG---IVFTIDDTTGDIHAIQR 63
Query: 117 LDHEDRSIYRIAVAATDNGF-PSRQTVRLLRVEVLD 151
LD E+RS Y + A D + +++ D
Sbjct: 64 LDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 53.2 bits (128), Expect = 9e-10
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 155 NRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES 214
T L SD D G + + Y L F + +G+I Q LD E
Sbjct: 14 YTGTDP---LYVGKLHSDMDRG-DGSIKYIL-SGEGAGIVFTIDDTTGDIHAIQRLDREE 68
Query: 215 RSSYEFPVVATDRG 228
RS Y A DR
Sbjct: 69 RSQYTLRAQALDRR 82
Score = 48.2 bits (115), Expect = 7e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1 EISTREPLDREARSSHELVAEARDQGS-PPRSSRVAVKISVTD 42
+I + LDRE RS + L A+A D+ + P I + D
Sbjct: 57 DIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 70.9 bits (174), Expect = 3e-16
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 58 ISVREEQ-PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
+ V EE P +V D D G + I Y + G +F I+ I+G I
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL-SGDGAGT--IFQINDITGDIHAIKR 62
Query: 117 LDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLD 151
LD E+++ Y + A D + ++V D
Sbjct: 63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 48.6 bits (116), Expect = 5e-08
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 154 DNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFE 213
+ +L +D D G + + Y L F + ++G+I + LD E
Sbjct: 12 EFSGPEP---ILVGRLHTDLDPG-SKKIKYIL-SGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 214 SRSSYEFPVVATDRG 228
++ Y A D
Sbjct: 67 EKAEYTLTAQAVDFE 81
Score = 46.3 bits (110), Expect = 3e-07
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTD 42
+I + LDRE ++ + L A+A D + P I V D
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 1e-05
Identities = 41/287 (14%), Positives = 86/287 (29%), Gaps = 90/287 (31%)
Query: 9 DREARSSHEL-------VAEARDQGSPPRSSRVAVKISV----------TDVNDNAPELV 51
D E + EL V+ + + +V + + + D++ A +L+
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 52 DPQEDVISVREEQPPGTEVVR----ARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPI 107
+ + + E+++ AR + K + S ++ + + I
Sbjct: 110 QENDTTLVKTK------ELIKNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAI--- 159
Query: 108 S----GVIRTKSVLDHEDRSIYRI----------AVAATDNGF-PSRQTVRLLRVEVLDL 152
G + E R +Y+ A T + + + + L++
Sbjct: 160 -FGGQGNTDD--YFE-ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 153 N------DNRPTFTSSSLLFKVSASDPDCGVNAMVNY-----TLGESPSRTNHFYMKSVS 201
N P L + S P GV + +Y LG +P Y+K +
Sbjct: 216 LEWLENPSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGAT 271
Query: 202 GE-------ICISQDLDFES-----------------RSSYEFPVVA 224
G + I++ +ES R +P +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Score = 31.9 bits (72), Expect = 0.22
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 41/90 (45%)
Query: 7 PLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD------------------VNDNAP 48
P D RS++ ++A +P RVA S VN N
Sbjct: 1798 PRDELGRSNYGMIA-----INP---GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 49 ELVDPQEDVISVREEQPPGTEVVRARAVDK 78
Q+ V + G RA+D
Sbjct: 1850 ----NQQYVAA-------GD----LRALDT 1864
Score = 30.0 bits (67), Expect = 0.71
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 19/93 (20%)
Query: 37 KISVTDVNDNAPELVDPQEDVISVRE-------EQP---PGTEVVRA-RAVDKDDGSNAT 85
+I V D D + D + S+ E P T +A +D G +
Sbjct: 456 QIPVYDTFDGS----DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 86 ISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
+ +L R+ DG GV I ++G + D
Sbjct: 512 LG--VLTHRNKDGTGVRVI--VAGTLDINPDDD 540
Score = 30.0 bits (67), Expect = 0.88
Identities = 30/272 (11%), Positives = 76/272 (27%), Gaps = 102/272 (37%)
Query: 10 REARSSHELVAEARDQGSPPRSSRVAVKISVTD-VNDNAPELV---DPQ------EDVIS 59
+ + + + ++ + S+ D V +N L + E+ +
Sbjct: 1633 MDLYKTSKAAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 60 VREEQPPGTEVVRARAVDK-------------DDG-----SNA-----TISYSILKGRDT 96
+ E ++ + K + G + + +
Sbjct: 1691 MIFETIV-DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE---- 1745
Query: 97 DGYGVFTIDPISGVIRTKSVLD-------HEDRSI--YRIAVAATDNGFPSRQTVRLLR- 146
+++K ++ H S+ Y A+A+ + V ++
Sbjct: 1746 -------------DLKSKGLIPADATFAGH---SLGEYA-ALASLADVMSIESLVEVVFY 1788
Query: 147 ------------------VEVLDLNDNR--PTFTSSSLLFKVSASDPDCG--VNAMVNYT 184
++ +N R +F+ +L + V G V VNY
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-VNYN 1847
Query: 185 LGESPSRTNHFYMKSVSGEI----CISQDLDF 212
++ Y +G++ ++ L+F
Sbjct: 1848 ---VENQQ---Y--VAAGDLRALDTVTNVLNF 1871
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.071
Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 42/204 (20%)
Query: 38 ISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGS--------N----AT 85
VTD A + + + + +D N +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 86 ISYSILKGRDT-DGYGVFTIDPISGVIRTK-SVLD-HEDRSIYR-IAVAATDNGFPSRQT 141
I+ SI G T D + D ++ +I + +VL+ E R ++ ++V FP
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV------FPP--- 383
Query: 142 VRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVS 201
+ + PT S + F V SD VN + Y+L E + + + S+
Sbjct: 384 -----------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 202 GEICISQDLDFESR----SSYEFP 221
E+ + + ++ Y P
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIP 456
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding
protein, guanosine, TP0319, transport protein; HET: GMP;
1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Length = 318
Score = 32.3 bits (74), Expect = 0.12
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 78 KDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFP 137
+D N + I G D D Y D V+ T S++ D + RI+ A D FP
Sbjct: 208 RDRRLNGQDVWVI--GVDRDQYMDGVYDGSKSVVLT-SMVKRADVAAERISKMAYDGSFP 264
Query: 138 SRQTVRL-LRVEVLDLNDNRPTFTS 161
Q++ L + + + + P +S
Sbjct: 265 GGQSIMFGLEDKAVGIPEENPNLSS 289
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.12
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 19/45 (42%)
Query: 139 RQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASD--PDCGVNAMV 181
+Q ++ +++ +SL K+ A D P + A +
Sbjct: 19 KQALK--KLQ-------------ASL--KLYADDSAPALAIKATM 46
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 30.3 bits (69), Expect = 0.20
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 15/57 (26%)
Query: 1 EISTREPLDRE---ARSSH-----ELVAEARDQGSPPRSSRVAVKISVTDVNDNAPE 49
+ +E LDRE ++ +++ + SP + + +++ DVND+APE
Sbjct: 65 NLLLKEKLDREELCGSTNPCILHFQVLLK-----SPVQFIQGEIQL--QDVNDHAPE 114
Score = 29.5 bits (67), Expect = 0.37
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 146 RVEVLDLNDNRPTFTSS 162
+++ D+ND+ P F
Sbjct: 102 EIQLQDVNDHAPEFMED 118
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase,
transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae}
SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A*
3c66_A* 2o1p_A 2q66_A*
Length = 530
Score = 27.5 bits (60), Expect = 4.3
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISV 40
+ST E + + L+ E + +GS A ++ V
Sbjct: 13 VSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQV 51
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl
transferase, transferase; HET: 3AT; 2.15A {Bos taurus}
SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A*
1f5a_A*
Length = 514
Score = 27.1 bits (59), Expect = 5.3
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISV 40
IS P + +A + +LV + G + +I +
Sbjct: 26 ISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILI 64
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 27.1 bits (61), Expect = 5.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 4 TREPLDREARSSHELVAEARDQG 26
+RE +D A S + A A G
Sbjct: 167 SREDVDAYALRSQQKAAAAWSGG 189
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 25.2 bits (56), Expect = 8.6
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 1 EISTREPLDRE---ARSSH-----ELVAEARDQGSPPRSSRVAVKISVTDVNDN 46
+ +DRE RS+ E++ + P + V V++ D+NDN
Sbjct: 57 ILFVNSRIDREELCGRSAECSIHLEVIVD-----RPLQVFHVEVEV--RDINDN 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.359
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,398,098
Number of extensions: 203404
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 101
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.2 bits)