BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8620
(695 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NAF|A Chain A, Structure Of The Intracellular Gating Ring From The Human
High- Conductance Ca2+ Gated K+ Channel (Bk Channel)
Length = 798
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 17/228 (7%)
Query: 99 ERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQ-NYYVVLLSPMELD 157
ER+K GGSYS+ KH+VVC + +++ +FL +F N +V L + +
Sbjct: 39 ERKKYGGSYSA--VSGRKHIVVCGH-ITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPN 95
Query: 158 TTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTIL 217
+ + + +V + QGS L DLAR ++ A+AC +LA + +D A D I+
Sbjct: 96 LELEALFKRHF--TQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIM 153
Query: 218 RSWAVKDFAPDVPQYVQIFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPG 269
R ++K++ P + Q+ + NK H+ K + +C ELK +A +C G
Sbjct: 154 RVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQG 213
Query: 270 ASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFG 317
ST++ L S +I ++ W + Y NE+Y L+ S F G
Sbjct: 214 LSTMLANLF--SMRSFIKIEEDTWQKYYLEGVSNEMYTEYLS-SAFVG 258
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 44/202 (21%)
Query: 447 FSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSL 506
S DL I L + V+++ N+ ++ +L D I+A + S+ F
Sbjct: 469 LSRADLRAVNINLCDMCVILSAN-QNNIDDTSLQDKECILASLNIKSMQF---------- 517
Query: 507 DDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRT------ITE 560
DD + G+L A + + S+ +++ V M + P I T ITE
Sbjct: 518 DDSI--GVLQANSQGFTPPGMDRSSPDNS--------PVHGMLRQ-PSITTGVNIPIITE 566
Query: 561 LSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLY 620
L +N++F+ D L Y+ + PFA G+ F+ S+LD+L+
Sbjct: 567 LVNDTNVQFLDQDDDDDPDTEL---------------YLTQ-PFACGTAFAVSVLDSLMS 610
Query: 621 QAFVKDYVITFIRLLLGVDQAP 642
+ D ++T IR L+ P
Sbjct: 611 ATYFNDNILTLIRTLVTGGATP 632
>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|B Chain B, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|C Chain C, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|D Chain D, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|E Chain E, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|F Chain F, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|G Chain G, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|H Chain H, Open Structure Of The Bk Channel Gating Ring
Length = 696
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 15/211 (7%)
Query: 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQ-NYYVVLLSPMELDTTMRMILQVPIWAQRVI 174
KH+VVC + +++ +FL +F N +V L + + + + + +V
Sbjct: 4 KHIVVCGH-ITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHF--TQVE 60
Query: 175 YIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQ 234
+ QGS L DLAR ++ A+AC +LA + +D A D I+R ++K++ P + Q
Sbjct: 61 FYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQ 120
Query: 235 IFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEG 286
+ + NK H+ K + +C ELK +A +C G ST++ L S
Sbjct: 121 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGLSTMLANLF--SMRSYI 178
Query: 287 QISQEEWHRLYGRCSGNEIYHILLADSRFFG 317
+I ++ W + Y NE+Y L+ S F G
Sbjct: 179 KIEEDTWQKYYLEGVANEMYTEYLS-SAFVG 208
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 56/216 (25%)
Query: 508 DLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVA---VQTMFKFFPGIRT------I 558
DL I L + V+++ N+ ++ +L D I+A +++M +F + T I
Sbjct: 453 DLRAVNINLCDMCVILSAN-QNNIDDASLQDKECILASLNIKSM-QFDDSVTTGSNIPII 510
Query: 559 TELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTL 618
TEL SN++F+ D L Y+ + PFA G+ F+ S+LD+L
Sbjct: 511 TELVNDSNVQFLDQDDDDDPDTEL---------------YLTQ-PFACGTAFAVSVLDSL 554
Query: 619 LYQAFVKDYVITFIRLL------------LGVDQAPGSGFLTSMKITKDDMWI------- 659
+ + D ++T IR L L + A G+ T + D
Sbjct: 555 MSATYFNDNILTLIRTLVTGGATPELEALLAEENALRGGYSTPQTLANRDRCRVAQLALY 614
Query: 660 ----------RTYGRLYQKLCSTTCEIPIGIYRTQD 685
YG L+ K T + GIYR +D
Sbjct: 615 DGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRD 650
>pdb|3MT5|A Chain A, Crystal Structure Of The Human Bk Gating Apparatus
Length = 726
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 15/211 (7%)
Query: 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQ-NYYVVLLSPMELDTTMRMILQVPIWAQRVI 174
KH+VVC + +++ +FL +F N +V L + + + + + +V
Sbjct: 4 KHIVVCGH-ITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHF--TQVE 60
Query: 175 YIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQ 234
+ QGS L DLAR ++ A+AC +LA + +D A D I+R ++K++ P + Q
Sbjct: 61 FYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQ 120
Query: 235 IFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEG 286
+ + NK H+ K + +C ELK +A +C G ST++ L S
Sbjct: 121 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLF--SMRSFI 178
Query: 287 QISQEEWHRLYGRCSGNEIYHILLADSRFFG 317
+I ++ W + Y NE+Y L+ S F G
Sbjct: 179 KIEEDTWQKYYLEGVSNEMYTEYLS-SAFVG 208
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 44/198 (22%)
Query: 451 DLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSLDDLL 510
DL I L + V+++ N+ ++ +L D I+A + S+ F DD +
Sbjct: 449 DLRAVNINLCDMCVILSAN-QNNIDDTSLQDKECILASLNIKSMQF----------DDSI 497
Query: 511 RAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRT------ITELSQS 564
G+L A + + S+ +++ V M + P I T ITEL
Sbjct: 498 --GVLQANSQGFTPPGMDRSSPDNS--------PVHGMLRQ-PSITTGVNIPIITELVND 546
Query: 565 SNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFV 624
+N++F+ D L Y+ + PFA G+ F+ S+LD+L+ +
Sbjct: 547 TNVQFLDQDDDDDPDTEL---------------YLTQ-PFACGTAFAVSVLDSLMSATYF 590
Query: 625 KDYVITFIRLLLGVDQAP 642
D ++T IR L+ P
Sbjct: 591 NDNILTLIRTLVTGGATP 608
>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring
pdb|4HPF|B Chain B, Structure Of The Human Slo3 Gating Ring
Length = 722
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 22/211 (10%)
Query: 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQ-NYYVVLLS----PMELDTTMRMILQVPIW 169
+K +VVC + D++ FL F + N +V L +EL+T + L
Sbjct: 3 KKFIVVCGN-ITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPSLELETIFKCYLAY--- 58
Query: 170 AQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDV 229
+I GS +K DL R + AEAC ++A SD A D I+R ++K++
Sbjct: 59 ---TTFISGSAMKWEDLRRVAVESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTT 115
Query: 230 PQYVQIFRPENKLHVK--------FAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTS 281
+QI + NK+++ + I+C ELK +A C PG T +T L
Sbjct: 116 RIIIQILQSHNKVYLPKIPSWNWDTGDNIICFAELKLGFIAQGCLVPGLCTFLTSLF--V 173
Query: 282 RGQEGQISQEEWHRLYGRCSGNEIYHILLAD 312
+ + ++ W + + N+I L+D
Sbjct: 174 EQNKKVMPKQTWKKHFLNSMKNKILTQRLSD 204
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 555 IRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASM 614
+ +TEL SN+ F++ L +E +E H+S F + G+VFS S
Sbjct: 510 VPILTELKNPSNIHFIE---------QLGGLEGSLQETNLHLSTAF----STGTVFSGSF 556
Query: 615 LDTLLYQAFVKDYVITFIRLLL 636
LD+LL AF +V+ +++L+
Sbjct: 557 LDSLLATAFYNYHVLELLQMLV 578
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 50 YYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSS 109
Y+ VT +TVGYGD+ P + V +I + + E+L + R+++
Sbjct: 51 YWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLI 110
Query: 110 HRAQSEKHVVVCS 122
A+S +HVV+C
Sbjct: 111 DVAKS-RHVVICG 122
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Query: 21 LMILSATFV-CGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQ 72
L +L+ TFV C ++ + + +A Y+V+VT +TVG+GD+V P Q
Sbjct: 208 LFVLTPTFVFCYMEDWSK--------LEAIYFVIVTLTTVGFGDYVAGADPRQ 252
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 50 YYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSS 109
Y+ VT +TVGYGD+ P + V +I + + +L + R+++
Sbjct: 51 YWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARLLTFLINREQMKLIGLI 110
Query: 110 HRAQSEKHVVVCS 122
A+S +HVV+C
Sbjct: 111 DVAKS-RHVVICG 122
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVGYGDF P +++ ++ I + +
Sbjct: 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGI 71
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP 66
L +L F I + ++F A ++ VVT +TVGYGD VP
Sbjct: 142 LTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVP 187
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 18 SQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP 66
+ L +L F I + ++F A ++ VVT +TVGYGD VP
Sbjct: 151 AVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVP 199
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG+GDF P +++ ++ I + +
Sbjct: 31 LRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGI 71
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A ++ VVT +TVGYGDF P +++ ++ I + +
Sbjct: 31 LRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGI 71
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A ++ VVT +TVGYGDF P +++ ++ I + +
Sbjct: 31 LRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGI 71
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVGYG+F P +++ ++ I + +
Sbjct: 31 LRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGI 71
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVGYG+F P +++ ++ I + +
Sbjct: 31 LRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGI 71
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V+T +TVGYGD P +W + +V+M+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMV 76
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 81 VALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTI---MDFLNEF 137
+ L V+PTQF + F +K GG+ ++ + + V+VC+ + T+ + + EF
Sbjct: 88 IILFVIPTQFLRGFF-----EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEF 142
Query: 138 YAHPLLQNYYVVLLSP 153
PLL VL P
Sbjct: 143 LPSPLLS----VLAGP 154
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 47 QATYYVVVTFSTVGYGDFVP 66
QA ++ VVT ST GYGD +P
Sbjct: 164 QAMWWAVVTLSTTGYGDTIP 183
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 45 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMV 104
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMV 97
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMV 76
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG GDF P +++ ++ I + +
Sbjct: 31 LRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGI 71
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV 97
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 16 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV 75
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV 76
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMV 76
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 44 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV 103
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMV 76
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV 76
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 97
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With
17 A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With
16 A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 18 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 77
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With
Tetrabutylammonium In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With
Tetraoctylammonium
Length = 124
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 97
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With
Tetrabutylammonium (Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 76
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 97
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration
Of K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration
Of Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 97
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 16 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 75
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + +A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMV 97
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVP 66
N A ++ +VT +TVGYGD VP
Sbjct: 43 NYPDALWWAIVTATTVGYGDIVP 65
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG G+F P +++ ++ I + +
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGI 88
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG G+F P +++ ++ I + +
Sbjct: 48 LRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGI 88
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQ----LYMVIMICVALIVL 86
N ++ Y+ ++ ST+G GD+VP +Q LY + + C L+ L
Sbjct: 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGL 247
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG G+F P +++ ++ I + +
Sbjct: 48 LRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGI 88
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G + + A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 38 IVLLAGSYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 97
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double
Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double
Mutants
Length = 114
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG G+F P +++ ++ I + +
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGI 88
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG G+F P +++ ++ I + +
Sbjct: 30 LRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGI 70
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMI 79
+++L+ +++ + G ++ A ++ V T +TVGYGD P +W + +V+M+
Sbjct: 61 IVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 120
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83
L A Y+ VVT +TVG G+F P +++ ++ I + +
Sbjct: 48 LRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGI 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,384,031
Number of Sequences: 62578
Number of extensions: 771807
Number of successful extensions: 2181
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 61
length of query: 695
length of database: 14,973,337
effective HSP length: 106
effective length of query: 589
effective length of database: 8,340,069
effective search space: 4912300641
effective search space used: 4912300641
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)