Query psy8620
Match_columns 695
No_of_seqs 381 out of 1981
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 23:29:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3193|consensus 100.0 5E-125 1E-129 980.2 35.7 648 3-688 169-954 (1087)
2 KOG1420|consensus 100.0 5.9E-90 1.3E-94 721.2 27.0 624 3-688 232-1033(1103)
3 PRK10537 voltage-gated potassi 100.0 1E-29 2.2E-34 275.2 23.5 215 40-280 164-384 (393)
4 PRK09496 trkA potassium transp 99.8 3.9E-17 8.5E-22 183.3 26.0 402 117-693 2-422 (453)
5 PF03493 BK_channel_a: Calcium 99.8 5.8E-19 1.3E-23 154.8 7.3 97 240-375 3-99 (101)
6 PRK10669 putative cation:proto 99.4 2.2E-12 4.7E-17 148.4 19.0 140 113-274 415-556 (558)
7 PRK09496 trkA potassium transp 99.4 1.1E-11 2.4E-16 139.2 19.2 200 114-399 230-435 (453)
8 PF02254 TrkA_N: TrkA-N domain 99.4 4.4E-12 9.6E-17 114.8 11.0 114 118-253 1-116 (116)
9 PF07885 Ion_trans_2: Ion chan 99.4 9.1E-13 2E-17 110.9 5.6 59 40-98 20-78 (79)
10 COG0569 TrkA K+ transport syst 99.3 2.5E-11 5.4E-16 122.9 16.7 199 117-397 2-206 (225)
11 PRK03659 glutathione-regulated 99.3 7.7E-11 1.7E-15 136.2 18.8 129 113-263 398-528 (601)
12 PF06241 DUF1012: Protein of u 99.3 5.4E-11 1.2E-15 110.7 12.7 143 194-401 1-149 (206)
13 PRK03562 glutathione-regulated 99.2 1.5E-10 3.2E-15 134.1 16.4 131 113-265 398-530 (621)
14 KOG3713|consensus 99.2 6.4E-11 1.4E-15 127.2 9.7 90 9-98 337-431 (477)
15 KOG1420|consensus 99.1 2.4E-09 5.1E-14 115.0 15.1 250 114-396 732-1060(1103)
16 KOG1419|consensus 99.0 4E-10 8.7E-15 121.3 6.5 60 39-98 264-323 (654)
17 KOG1545|consensus 98.9 1.8E-09 4E-14 110.5 4.9 56 38-93 387-442 (507)
18 KOG4404|consensus 98.7 2.5E-08 5.5E-13 101.6 7.4 68 29-98 173-248 (350)
19 PLN03192 Voltage-dependent pot 98.7 1.8E-08 4E-13 121.2 5.9 55 45-99 251-305 (823)
20 COG1226 Kch Kef-type K+ transp 98.4 2.6E-06 5.6E-11 84.0 13.4 145 112-278 18-165 (212)
21 KOG1418|consensus 98.3 6.8E-07 1.5E-11 99.2 4.8 61 40-100 111-171 (433)
22 KOG4390|consensus 98.3 2.8E-07 6E-12 95.4 1.2 57 41-97 353-413 (632)
23 PF01007 IRK: Inward rectifier 98.0 2.4E-06 5.1E-11 91.2 2.7 118 1-123 20-160 (336)
24 PF06241 DUF1012: Protein of u 98.0 4.3E-05 9.4E-10 71.8 9.5 133 517-693 1-135 (206)
25 KOG0498|consensus 97.9 4.1E-06 8.8E-11 96.5 1.9 55 45-99 295-349 (727)
26 KOG4404|consensus 97.7 2.4E-05 5.3E-10 80.2 3.5 54 41-94 77-130 (350)
27 KOG0501|consensus 97.7 2.1E-05 4.6E-10 85.6 2.7 63 45-107 424-486 (971)
28 KOG1418|consensus 97.4 5.7E-05 1.2E-09 83.7 2.0 50 41-90 239-296 (433)
29 KOG3684|consensus 97.4 0.00017 3.6E-09 77.4 4.4 57 41-97 284-340 (489)
30 PRK10537 voltage-gated potassi 97.1 0.0013 2.8E-08 72.1 7.5 62 505-577 291-352 (393)
31 KOG3827|consensus 96.7 0.0073 1.6E-07 63.9 9.2 116 2-122 49-187 (400)
32 KOG3193|consensus 96.6 0.0031 6.7E-08 68.6 5.5 132 169-300 760-931 (1087)
33 PF02254 TrkA_N: TrkA-N domain 96.1 0.008 1.7E-07 53.9 4.9 61 505-576 51-111 (116)
34 COG0490 Putative regulatory, l 96.1 0.0046 9.9E-08 58.0 3.0 46 351-399 96-145 (162)
35 PF00520 Ion_trans: Ion transp 95.7 0.024 5.3E-07 55.1 6.6 51 42-92 143-199 (200)
36 COG0569 TrkA K+ transport syst 95.0 0.12 2.5E-06 52.5 9.2 140 505-693 55-195 (225)
37 PF03493 BK_channel_a: Calcium 94.0 0.14 3.1E-06 44.9 6.3 78 602-680 7-100 (101)
38 KOG0499|consensus 92.3 0.084 1.8E-06 58.7 2.5 59 40-99 399-457 (815)
39 KOG0500|consensus 91.5 0.1 2.3E-06 57.0 2.1 56 45-101 184-239 (536)
40 PF02080 TrkA_C: TrkA-C domain 91.2 0.29 6.3E-06 39.5 4.0 46 351-399 10-58 (71)
41 PRK03659 glutathione-regulated 90.5 0.51 1.1E-05 55.1 6.7 68 500-578 446-515 (601)
42 COG3273 Uncharacterized conser 87.9 0.44 9.5E-06 45.8 3.0 57 335-397 116-176 (204)
43 PRK10669 putative cation:proto 86.2 1.5 3.2E-05 50.9 6.8 61 505-576 470-530 (558)
44 PRK06719 precorrin-2 dehydroge 85.3 4.6 0.0001 38.5 8.6 83 114-225 12-94 (157)
45 PF00060 Lig_chan: Ligand-gate 85.2 0.89 1.9E-05 42.3 3.6 58 43-101 43-100 (148)
46 PRK03562 glutathione-regulated 84.5 1.5 3.2E-05 51.5 5.8 67 500-577 446-514 (621)
47 KOG4440|consensus 81.1 2.4 5.2E-05 47.8 5.3 93 6-98 561-667 (993)
48 PF13460 NAD_binding_10: NADH( 79.1 20 0.00043 34.3 10.7 69 118-203 1-70 (183)
49 KOG1052|consensus 74.7 3.5 7.6E-05 48.8 4.7 58 43-101 380-437 (656)
50 TIGR01470 cysG_Nterm siroheme 73.9 30 0.00065 34.5 10.4 85 115-225 9-93 (205)
51 PRK06718 precorrin-2 dehydroge 73.6 16 0.00035 36.3 8.4 85 114-224 9-93 (202)
52 PF05368 NmrA: NmrA-like famil 58.2 50 0.0011 33.1 8.7 73 118-203 1-74 (233)
53 KOG1054|consensus 56.9 6.3 0.00014 44.4 1.9 56 42-98 593-648 (897)
54 COG3400 Uncharacterized protei 56.5 2.8E+02 0.0061 29.9 13.6 98 116-232 2-100 (471)
55 CHL00194 ycf39 Ycf39; Provisio 55.7 55 0.0012 34.6 8.9 71 117-202 2-73 (317)
56 PLN02214 cinnamoyl-CoA reducta 51.0 91 0.002 33.5 9.8 79 115-204 10-92 (342)
57 TIGR00934 2a38euk potassium up 47.7 27 0.00058 41.6 5.1 42 41-82 734-784 (800)
58 PLN03223 Polycystin cation cha 46.5 62 0.0013 40.7 7.9 95 4-100 1317-1425(1634)
59 PF01073 3Beta_HSD: 3-beta hyd 45.4 82 0.0018 32.9 8.0 76 119-204 2-77 (280)
60 COG4262 Predicted spermidine s 44.4 2.1E+02 0.0045 31.2 10.5 119 113-239 288-411 (508)
61 PRK05482 potassium-transportin 40.2 70 0.0015 36.8 6.8 43 43-85 450-494 (559)
62 KOG1053|consensus 39.7 70 0.0015 38.3 6.7 55 42-102 607-667 (1258)
63 KOG1430|consensus 39.3 83 0.0018 34.3 7.0 81 115-203 4-85 (361)
64 TIGR00933 2a38 potassium uptak 39.3 44 0.00095 36.9 5.1 41 42-82 346-389 (390)
65 COG0168 TrkG Trk-type K+ trans 38.2 55 0.0012 37.4 5.7 50 44-93 424-482 (499)
66 PLN02662 cinnamyl-alcohol dehy 38.1 2E+02 0.0043 30.1 9.8 80 116-203 5-86 (322)
67 COG1648 CysG Siroheme synthase 37.3 1.6E+02 0.0035 29.4 8.3 86 115-226 12-97 (210)
68 COG1226 Kch Kef-type K+ transp 35.7 48 0.001 31.7 4.3 62 505-577 74-136 (212)
69 PRK05562 precorrin-2 dehydroge 35.2 3.5E+02 0.0076 27.4 10.3 86 114-225 24-109 (223)
70 PF07077 DUF1345: Protein of u 34.7 23 0.00049 34.6 1.7 48 39-86 127-174 (180)
71 PLN02986 cinnamyl-alcohol dehy 34.1 2.9E+02 0.0063 29.0 10.4 80 116-203 6-87 (322)
72 PF03435 Saccharop_dh: Sacchar 34.0 1E+02 0.0022 33.7 7.0 75 118-202 1-76 (386)
73 PF08016 PKD_channel: Polycyst 34.0 1.2E+02 0.0025 33.9 7.5 76 5-80 323-404 (425)
74 PLN02989 cinnamyl-alcohol dehy 33.2 3E+02 0.0065 28.9 10.3 81 115-203 5-87 (325)
75 TIGR00933 2a38 potassium uptak 32.6 63 0.0014 35.6 5.0 48 43-90 127-180 (390)
76 PF02386 TrkH: Cation transpor 32.3 26 0.00057 38.0 1.9 38 45-82 295-338 (354)
77 PLN02650 dihydroflavonol-4-red 32.1 1.5E+02 0.0032 31.8 7.7 82 114-203 4-87 (351)
78 TIGR01181 dTDP_gluc_dehyt dTDP 29.9 3.6E+02 0.0078 27.8 10.1 76 118-203 2-83 (317)
79 KOG3676|consensus 29.7 1.2E+02 0.0027 35.9 6.7 54 43-96 585-646 (782)
80 PLN02583 cinnamoyl-CoA reducta 29.6 4.5E+02 0.0097 27.3 10.7 78 115-200 6-85 (297)
81 PRK06914 short chain dehydroge 29.2 3E+02 0.0066 28.0 9.3 80 116-202 4-90 (280)
82 PRK10750 potassium transporter 28.6 79 0.0017 36.0 5.0 20 42-61 204-223 (483)
83 PLN02427 UDP-apiose/xylose syn 28.5 2E+02 0.0043 31.3 8.1 79 116-203 15-96 (386)
84 PF13289 SIR2_2: SIR2-like dom 27.6 1.1E+02 0.0025 27.6 5.1 42 114-155 85-126 (143)
85 PF12911 OppC_N: N-terminal TM 26.2 1.6E+02 0.0035 22.2 4.9 34 2-35 4-37 (56)
86 PLN02896 cinnamyl-alcohol dehy 26.1 2.6E+02 0.0056 29.9 8.3 79 114-203 9-89 (353)
87 PF01370 Epimerase: NAD depend 25.8 2E+02 0.0042 28.3 6.9 72 118-203 1-75 (236)
88 PF00670 AdoHcyase_NAD: S-aden 25.8 1E+02 0.0023 29.5 4.4 42 114-163 22-63 (162)
89 PF00106 adh_short: short chai 25.1 1.4E+02 0.0031 27.6 5.4 66 116-189 1-70 (167)
90 PRK12745 3-ketoacyl-(acyl-carr 24.2 2E+02 0.0044 28.8 6.7 77 116-201 3-88 (256)
91 PF08659 KR: KR domain; Inter 23.8 1.7E+02 0.0036 28.2 5.7 64 117-189 2-71 (181)
92 COG0168 TrkG Trk-type K+ trans 23.4 1.2E+02 0.0026 34.7 5.2 65 25-94 183-254 (499)
93 PRK10750 potassium transporter 23.1 1.2E+02 0.0026 34.6 5.1 41 42-82 419-465 (483)
94 TIGR02759 TraD_Ftype type IV c 20.8 4.2E+02 0.0091 30.9 9.0 18 113-130 174-191 (566)
95 PLN03209 translocon at the inn 20.5 3.7E+02 0.008 31.3 8.3 81 114-202 79-168 (576)
No 1
>KOG3193|consensus
Probab=100.00 E-value=5.3e-125 Score=980.24 Aligned_cols=648 Identities=49% Similarity=0.832 Sum_probs=585.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhH
Q psy8620 3 QNDLHRAMQKSQSALSQQLMILSATF-------VCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYM 75 (695)
Q Consensus 3 ~~~~~~~~~r~~~~l~~~l~il~~~l-------~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~ 75 (695)
|||++|.++..++++++++++++.++ +||+.++.+++....++|.++||+|||+|||||||.+|.-|++++.+
T Consensus 169 mndl~r~~~~s~sal~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~ 248 (1087)
T KOG3193|consen 169 MNDLNRKSFISSSALFRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCV 248 (1087)
T ss_pred hhhHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHH
Confidence 79999999999999999998876654 67899999988889999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q psy8620 76 VIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPME 155 (695)
Q Consensus 76 i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e 155 (695)
+++|+++++++|.++..++..|.+|++.++.|+..+ ..+.|||||-....++.+.+||.|||+||..++..||+++|.|
T Consensus 249 vi~icval~~ip~q~~~l~~tw~erqk~g~~~ss~~-~~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~~~ivllsp~e 327 (1087)
T KOG3193|consen 249 VILICVALGLIPKQLDELGQTWSERQKSGTDFSSWN-GVESHVVVTITTLEVEFIRDFLEEFYAHPENQRIQIVLLSPAE 327 (1087)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhcCCCccccc-cccceEEEEEeeeeHHHHHHHHHHHhcCcccccEEEEEechHH
Confidence 999999999999999999999999999999998654 4789999999989999999999999999999999999999999
Q ss_pred ccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEE
Q psy8620 156 LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQI 235 (695)
Q Consensus 156 ~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i 235 (695)
++...+.+++.|.|..+|.|++|+.++++||+||++..|+|||||+.++..+..+.|.+||++.|++|+++|+++.++|+
T Consensus 328 ld~~~rmllkiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv~qyvqi 407 (1087)
T KOG3193|consen 328 LDNQTRMLLKIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNVKQYVQI 407 (1087)
T ss_pred hcchhhhheeccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCchHHHhhh
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred eCccchhhccCCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeecccccc
Q psy8620 236 FRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRF 315 (695)
Q Consensus 236 ~~~~~~~~~~gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~ 315 (695)
..+|.|.|++.|+.+||.+|+|..|||++|.|||++++++.|+++++|++++...++|.+.|+.+
T Consensus 408 fr~e~k~hi~~ae~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~--------------- 472 (1087)
T KOG3193|consen 408 FRAETKMHIEHAEVLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFH--------------- 472 (1087)
T ss_pred hchhhhhhhhhheeEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccc---------------
Confidence 99999999999999999999999999999999999999999999999999988888888877755
Q ss_pred ccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec-------ceEEEecccceec
Q psy8620 316 FGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK-------DDMWIRTYGRLYQ 388 (695)
Q Consensus 316 ~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig-------~~i~lNP~~~~i~ 388 (695)
+|||||++++++|+||.+|+||+|..+++|.+++||+.++| +++.||||+.+|+
T Consensus 473 -------------------sgne~y~i~~~dskff~ey~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~ 533 (1087)
T KOG3193|consen 473 -------------------SGNEMYQIKVQDSKFFCEYVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHII 533 (1087)
T ss_pred -------------------cCCeEEEEEecccceeeeecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCccccc
Confidence 99999999999999999999999999999999999999997 5799999999999
Q ss_pred ccCCCeeeecccccc----------------------------------cCCCCc-------------------ccCCCC
Q psy8620 389 KLCSTTCEIPIGIYR----------------------------------TQDMSS-------------------IESPQP 415 (695)
Q Consensus 389 ~~~~~~~~~~~~~~~----------------------------------~~~~~~-------------------~~~~~~ 415 (695)
+ ++|+|.++.-.++ +.|..+ ++..+.
T Consensus 534 ~-~~dt~yym~lt~ee~~td~r~g~~s~~~~a~~a~t~a~i~tv~v~vp~sd~t~~~grk~~~~~~~aa~~~hl~~~g~h 612 (1087)
T KOG3193|consen 534 Q-PTDTVYYMGLTNEESLTDFRKGIRSQQKRANVASTIANIGTVAVDVPRSDKTELVGRKKKKRKEKAADEIHLIEVGEH 612 (1087)
T ss_pred C-CCCeEEEEecccccchhhhhhhhhhhhhhhhhhhhhhcccceEEecCCCCCCcccccccchhhhhccCceEEEeeccc
Confidence 9 6999977532110 000000 000112
Q ss_pred CCCCCCCCcccCC-----C--CCccc--------------ccccccccccccc---hhhhhhhcccccc--------c--
Q psy8620 416 RESNPRPSAHKAD-----A--PPSKL--------------TRLAFYSVEFYLF---SLDDLLRAGILLA--------E-- 461 (695)
Q Consensus 416 ~~~~~~p~i~~~~-----~--~~~~~--------------~i~G~~~~~~~i~---~l~~ll~~~~~~~--------~-- 461 (695)
-..++||+|+..+ + +.++- +--.+|++.++|| ++|+++|+++++| .
T Consensus 613 ~~~srrpsi~m~teg~idss~ds~qee~cd~crg~~~~~~lqr~~p~v~~~ig~s~t~c~~~kerr~lccl~l~~~c~h~ 692 (1087)
T KOG3193|consen 613 VQSSRRPSIAMVTEGKIDSSSDSDQEEICDKCRGPCIQHKLQRTYPQVRTYIGTSNTVCHMMKERRSLCCLKLDEKCAHK 692 (1087)
T ss_pred cccccCCceEEEecccccCccccchhHhhhhhccHHHHHHHHhhCCCcccccccchHHHHHHhccccchhhhhHhHhhhc
Confidence 2236789886441 1 11111 1124899999999 9999999988864 2
Q ss_pred ------ceeecceeeecc----------------ccccccccCCceehh-h----------HHhhhccCCceEEec----
Q psy8620 462 ------NVVVVNKELSNS----------------AEEDTLADCNTIVAV-Q----------KLTSLAFYSVEFYLF---- 504 (695)
Q Consensus 462 ------~~~~~~~~~~l~----------------~~~~~~~~~~~iv~~-~----------~~~~~~~fp~v~~~~---- 504 (695)
.|.|+|+.++++ +++|+.++++||+++ + +|+.+++||.||||.
T Consensus 693 s~~~a~eyqw~nr~iilaad~~s~g~yn~viplra~~r~~~~l~piiille~~~qdsl~~afldaisyfp~vywm~g~v~ 772 (1087)
T KOG3193|consen 693 SATSAHEYQWRNRPIILAADRTSSGMYNLVIPLRAYYRPVHDLHPIIILLELEEQDSLNDAFLDAISYFPDVYWMKGKVG 772 (1087)
T ss_pred cccchhhhhhcCCceEEEeccccCcceEEEEehhhhcccccccCceEEEEecccccchhHHHHHHHHhcchhhhhhcCcC
Confidence 388887766654 477899999999988 2 788999999999998
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHHHhhhh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSK 584 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~ 584 (695)
+.|+|+||||..|++|||+ ++.+.+.+ ++.+|++||++++.|+++||+++.||||++++||+|+||.++|.|++++|+
T Consensus 773 ~ld~llragvs~ae~vvvv-ke~a~~ae-e~tadcntii~vq~~~r~fp~lr~itelt~atnmrf~qf~~h~~ysl~~sr 850 (1087)
T KOG3193|consen 773 NLDCLLRAGVSSAEHVVVV-KETAVMAE-EHTADCNTIITVQKIHRMFPRLRMITELTHATNMRFVQFNPHNAYSLAQSR 850 (1087)
T ss_pred cHHHHHHhcccccceEEEE-ehhhhhhh-hhccccchhhhHHHHHHhchhHHHHHHHhhhccceEEeecCcchhHHHHHH
Confidence 9999999999999999999 66555544 444999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCCCccCCCcHHH
Q psy8620 585 MEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGR 664 (695)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~~~~~~~tf~~ 664 (695)
|||+|+++|+|++||||.|||+|.|||.+|||+||||++.+|++++++|.|+|.++.+|+|+|+++.++.+|+|++|||+
T Consensus 851 ~ekker~rgsh~~~mfrlpfa~g~vfsa~mld~llyqa~ik~~vv~~vrlllgidq~~~~g~lts~~it~dd~wir~ygr 930 (1087)
T KOG3193|consen 851 FEKKERKRGSHMPFMFRLPFAQGGVFSANMLDRLLYQAIIKPFVVDLVRLLLGIDQHSDGGYLTSFVITSDDLWIRNYGR 930 (1087)
T ss_pred HHHHHhhccCCCceEEeccccccceeeHHHHHHHHHHHHhhHHHHHHHHHHhccccCCCCceEEEEEEeccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCceeeEEEeecCCCC
Q psy8620 665 LYQKLCSTTCEIPIGIYRTQDMSS 688 (695)
Q Consensus 665 lf~~ll~~~~~i~iGlyR~~~~~~ 688 (695)
|||+||++.+.|||||||+++++.
T Consensus 931 lyqklcss~~~ipigi~rt~~~~~ 954 (1087)
T KOG3193|consen 931 LYQKLCSSVADIPIGIFRTKKMDT 954 (1087)
T ss_pred HHHHHhhhhcccceeeeeeccccc
Confidence 999999999999999999998863
No 2
>KOG1420|consensus
Probab=100.00 E-value=5.9e-90 Score=721.22 Aligned_cols=624 Identities=25% Similarity=0.367 Sum_probs=502.4
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHhhcc---------CCCCCChhhhhhheeeeeeccCcCCcccC
Q psy8620 3 QNDLHRAMQKSQS----ALSQQLMILSATF--VCGIQHFQRA---------GHRHLNLFQATYYVVVTFSTVGYGDFVPD 67 (695)
Q Consensus 3 ~~~~~~~~~r~~~----~l~~~l~il~~~l--~~g~~~~~~~---------~~~~~~~~da~Yf~vvT~sTVGYGDi~P~ 67 (695)
..|+.+.+.-.+. ++.+++-+++.++ .+|+.|+.+. +...++|+++.||.+||||||||||++..
T Consensus 232 vpdilqylnilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~ 311 (1103)
T KOG1420|consen 232 VPDILQYLNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCK 311 (1103)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeeh
Confidence 3455554433221 3455555555554 4677777552 23467899999999999999999999999
Q ss_pred CcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEccCccHHHHHHHHHHHhcC-CCCCcc
Q psy8620 68 IWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAH-PLLQNY 146 (695)
Q Consensus 68 t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~~~~~~~l~~~L~e~~~~-~~~~~~ 146 (695)
|..||+|++++|++|++.|+..+..+++++.+++|++|.|.+ +..++||||||+ .+.+++..||+.|.|. .+..++
T Consensus 312 t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~--ehgkkhivvcgh-ityesvshflkdflhedrddvdv 388 (1103)
T KOG1420|consen 312 TTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKA--EHGKKHIVVCGH-ITYESVSHFLKDFLHEDRDDVDV 388 (1103)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeeh--hcCCeeEEEecc-eeHHHHHHHHHHHhhccccccce
Confidence 999999999999999999999999999999999999999865 578999999998 8999999999999854 233578
Q ss_pred eEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhhC
Q psy8620 147 YVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFA 226 (695)
Q Consensus 147 ~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~ 226 (695)
+||++....|+-+++.+.+. ..+.|.+++|..+++-||.|+++++|+||+||+++++.|+.++|+.||++++++|++.
T Consensus 389 evvflhr~~pdleleglfkr--hft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanimrvisiknys 466 (1103)
T KOG1420|consen 389 EVVFLHRISPDLELEGLFKR--HFTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYS 466 (1103)
T ss_pred EEEEEecCCCCcchHHHHhh--heeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhheEEEEeccCC
Confidence 99999987777777665442 2578999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeCccchhhc--------cCCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChhHHHHHhc
Q psy8620 227 PDVPQYVQIFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYG 298 (695)
Q Consensus 227 p~i~Iiv~i~~~~~~~~~--------~gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~ 298 (695)
|++++|+|+.+-+||.++ +.+|.|||..|+|...+||+|+.||++|++.||+.. +.....+.++.|+++|+
T Consensus 467 ~dirvi~qlmqyhnkayllnipswdwk~gddviclaelklgfiaqsclapgfstmmanlfam-rsfktsp~~~~w~ndyl 545 (1103)
T KOG1420|consen 467 PDIRVITQLMQYHNKAYLLNIPSWDWKEGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAM-RSFKTSPEEDTWQNDYL 545 (1103)
T ss_pred CchhHHHHHHHhhchheeecCCCcccccCCceEEehhhhhhhhHHHhhcccHHHHHHHHHHH-HhccCCcccchhHHHHH
Confidence 999999999999999876 346999999999999999999999999999999987 33445577889999999
Q ss_pred CCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec---
Q psy8620 299 RCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK--- 375 (695)
Q Consensus 299 ~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig--- 375 (695)
+|.|+|||+++||+ .|+|++|.+++..++.+.+..+++
T Consensus 546 rg~gmemyte~lsp---------------------------------------~f~g~sfp~a~elcf~klkllllaie~ 586 (1103)
T KOG1420|consen 546 RGVGMEMYTEYLSP---------------------------------------AFVGLSFPTACELCFVKLKLLLLAIEY 586 (1103)
T ss_pred hhcchhHhhhhcCH---------------------------------------hhcCCchHHHHHHHHHHHHHhheeeee
Confidence 99888888888765 478999999999999999977764
Q ss_pred -------ceEEEecccceecccCCCeeeecccccc-----------cCCCC---cccCCCCCCC----------------
Q psy8620 376 -------DDMWIRTYGRLYQKLCSTTCEIPIGIYR-----------TQDMS---SIESPQPRES---------------- 418 (695)
Q Consensus 376 -------~~i~lNP~~~~i~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~~~---------------- 418 (695)
.++.+||++...+.++....++...+++ |+|.. .|+.|.|...
T Consensus 587 k~een~es~i~inpg~h~kiq~~tqgffiaqsadevkraffyckachddikd~~likkckckn~k~~q~~~ls~~~k~~n 666 (1103)
T KOG1420|consen 587 KDEENRESRILINPGNHLKIQEGTQGFFIAQSADEVKRAFFYCKACHDDIKDPKLIKKCKCKNLKDEQPSTLSPKKKQRN 666 (1103)
T ss_pred ccccCccceeEeCCCCCceeccCCceEEEecchHHHHHHHhhHHhhhhcccCHHHHHhcCCCcccccCchhcCccccCCC
Confidence 4699999999888866666654333221 23321 2332222111
Q ss_pred ---CCCCCcccC----C--------------CCCcccccccccccccccc-hhhhhhhcccc---cccc-----------
Q psy8620 419 ---NPRPSAHKA----D--------------APPSKLTRLAFYSVEFYLF-SLDDLLRAGIL---LAEN----------- 462 (695)
Q Consensus 419 ---~~~p~i~~~----~--------------~~~~~~~i~G~~~~~~~i~-~l~~ll~~~~~---~~~~----------- 462 (695)
...|.+.|. + +...|.+.+|+++|+|... +-|.|-|.+.. +..|
T Consensus 667 gg~k~~p~~sp~~~r~~ts~~~g~~~~~~f~~~~mkydstgmfhwcp~k~ledcil~r~qaamtvlnghvvvclfad~ds 746 (1103)
T KOG1420|consen 667 GGMKNSPNTSPKLMRHDTSLIPGNDQIDNFDSHVMKYDSTGMFHWCPPKELEDCILTRSQAAMTVLNGHVVVCLFADVDS 746 (1103)
T ss_pred CCccCCCCCCHHHhcCCcccCCCCcchhhhhhhhhccccccceeecCchhHHHHhhhhhHhhheeecCcEEEEEecCCCC
Confidence 001211111 0 1112457889999998776 66666665443 2333
Q ss_pred --eeecceeeeccccccccccCCceehhh-------HHhhhccCCceEEec----ChhHHHHhcccccCeEEEEecCCCC
Q psy8620 463 --VVVVNKELSNSAEEDTLADCNTIVAVQ-------KLTSLAFYSVEFYLF----SLDDLLRAGILLAENVVVVNKELSN 529 (695)
Q Consensus 463 --~~~~~~~~~l~~~~~~~~~~~~iv~~~-------~~~~~~~fp~v~~~~----~~~~L~~a~i~~a~~vvil~~~~~~ 529 (695)
++++|.+||+++++.+++|++.+|+++ .|+.+.++|+|.++. +++||++.||..||+|||++... .
T Consensus 747 pliglrnlvmplrasnfhyhelkhvvivgsieylrrewktl~nlpkisilngsplsradlravninlcdmcvilsa~v-p 825 (1103)
T KOG1420|consen 747 PLIGLRNLVMPLRASNFHYHELKHVVIVGSIEYLRREWKTLHNLPKISILNGSPLSRADLRAVNINLCDMCVILSANV-P 825 (1103)
T ss_pred chhhhhhheeeccccccchhheeeEEEEccHHHHHHHHHHHhCCCceeecCCCCCchhhhhhccccccceeEEEecCC-C
Confidence 578999999999999999999999995 566799999999986 99999999999999999999764 3
Q ss_pred CcccCcccchHHHHHHHHHHHh------------------------------------cCCCcEEEeecccccccccccc
Q psy8620 530 SAEEDTLADCNTIVAVQTMFKF------------------------------------FPGIRTITELSQSSNMRFMQFR 573 (695)
Q Consensus 530 ~~~~~~~~D~~tI~~~~~i~~~------------------------------------~~~i~iitEl~~~~n~~f~~~~ 573 (695)
+.+++.++|.++|++..+|+.+ +-++++||||++++|++|+++.
T Consensus 826 n~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~nvpmitelvndsnvqfldqd 905 (1103)
T KOG1420|consen 826 NIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGVNVPMITELVNDSNVQFLDQD 905 (1103)
T ss_pred CCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCcccccCchhhhhhhccccceecccC
Confidence 4689999999999999887642 1178999999999999999998
Q ss_pred cchhHHHhhhhhhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCC-----------
Q psy8620 574 AQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAP----------- 642 (695)
Q Consensus 574 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~----------- 642 (695)
..||+ ..+.++++|||+|+.|..|+||+||+.+|||+.+++++|.|++++..|
T Consensus 906 ddddp----------------dtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggatpelelilaegag 969 (1103)
T KOG1420|consen 906 DDDDP----------------DTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGATPELELILAEGAG 969 (1103)
T ss_pred CCCCC----------------CceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCChhhHHHHhcccc
Confidence 88776 255788999999999999999999999999999999999999776543
Q ss_pred -CCcceeeeeeCCCcc-----------------CCCcHHHHHHHHHhccCceeeEEEeecCCCC
Q psy8620 643 -GSGFLTSMKITKDDM-----------------WIRTYGRLYQKLCSTTCEIPIGIYRTQDMSS 688 (695)
Q Consensus 643 -~~~~l~~~~i~~~~~-----------------~~~tf~~lf~~ll~~~~~i~iGlyR~~~~~~ 688 (695)
.+|+-+...++.+|. -+.+||++|+++|+++|++||||||..+...
T Consensus 970 lrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~ 1033 (1103)
T KOG1420|consen 970 LRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHL 1033 (1103)
T ss_pred ccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCceeEEEeeeecccc
Confidence 133333322333331 2479999999999999999999999999876
No 3
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=1e-29 Score=275.17 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=176.4
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHH---hcCCcccccccCCc
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQK---LGGSYSSHRAQSEK 116 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~ 116 (695)
+..++++|||||+++|+|||||||++|.|+.||++++++|+.|++++++.++.+...+.+++. .+++.. ....++
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~~--~~~~k~ 241 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRIS--HMHRKD 241 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcccCC
Confidence 346899999999999999999999999999999999999999999999999888776554321 122222 123579
Q ss_pred eEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 117 HVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 117 HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
|+|||||+..++.+.+.|++.. .++|++++++. +.. ...+..++.||++++++|++|++++|++
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g-------~~vvVId~d~~----~~~-----~~~g~~vI~GD~td~e~L~~AgI~~A~a 305 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRG-------QAVTVIVPLGL----EHR-----LPDDADLIPGDSSDSAVLKKAGAARARA 305 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCC-------CCEEEEECchh----hhh-----ccCCCcEEEeCCCCHHHHHhcCcccCCE
Confidence 9999999999999999987631 35666654321 111 1346789999999999999999999999
Q ss_pred EEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCCh-HHH
Q psy8620 197 CFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGA-STL 273 (695)
Q Consensus 197 viIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl-~~l 273 (695)
+++++ ++|.+|+.+++++|+++|++++++++.++++...+ .|+|.||+|.++.+.+|++....+.+ ...
T Consensus 306 VI~~t--------~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g~~I~~~~ 377 (393)
T PRK10537 306 ILALR--------DNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNGEEIDNDM 377 (393)
T ss_pred EEEcC--------CChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcCCCCCHHH
Confidence 99854 57999999999999999999999999999997665 48999999999999999999987666 677
Q ss_pred HHHHhhc
Q psy8620 274 VTLLLHT 280 (695)
Q Consensus 274 i~~Ll~~ 280 (695)
+.+++..
T Consensus 378 i~~~~~~ 384 (393)
T PRK10537 378 ITSMLFN 384 (393)
T ss_pred HHHHHcc
Confidence 7777754
No 4
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.78 E-value=3.9e-17 Score=183.29 Aligned_cols=402 Identities=13% Similarity=0.126 Sum_probs=259.0
Q ss_pred eEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 117 HVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 117 HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
||+|||+|..+..+...|.+.. ..+++++..+ +..+.+.+ ..++.++.||+++.+.|+++++++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g-------~~v~vid~~~--~~~~~~~~----~~~~~~~~gd~~~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGEN-------NDVTVIDTDE--ERLRRLQD----RLDVRTVVGNGSSPDVLREAGAEDADL 68 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-------CcEEEEECCH--HHHHHHHh----hcCEEEEEeCCCCHHHHHHcCCCcCCE
Confidence 8999999999999999998742 3677776433 22332211 236889999999999999999999999
Q ss_pred EEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccc---hhh----ccCCCeEEehHHHHHHHHHHHhcCCC
Q psy8620 197 CFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPEN---KLH----VKFAEFIVCEDELKYALLANNCTCPG 269 (695)
Q Consensus 197 viIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~---~~~----~~gad~VI~~~el~~~lLa~s~~~PG 269 (695)
+++++ .+|..|+..++.+|.++|..++++++.++++ ... ..|+|.||++..+.+.+|+..+..|+
T Consensus 69 vi~~~--------~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~~~ 140 (453)
T PRK09496 69 LIAVT--------DSDETNMVACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEYPG 140 (453)
T ss_pred EEEec--------CChHHHHHHHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcCCC
Confidence 88854 4678899999999999999999999988766 222 24899999999999999999998888
Q ss_pred hHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcc
Q psy8620 270 ASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRF 349 (695)
Q Consensus 270 l~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~ 349 (695)
...++. ... ...+++.+.+++
T Consensus 141 ~~~~~~----~~~----------------------------------------------------~~~~i~e~~V~~--- 161 (453)
T PRK09496 141 ALDVEE----FAD----------------------------------------------------GRVQLVEVKVYE--- 161 (453)
T ss_pred ceEeee----ecC----------------------------------------------------CeEEEEEEEeCC---
Confidence 754321 100 113455555554
Q ss_pred cccccCcchhHHHhhhh-hhhcceeec----ceEEEecccceecccCCCeeeecccccccCCCCcccCCCCCCCCCCCCc
Q psy8620 350 FGEYEGKSFTYASFHSH-RKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQPRESNPRPSA 424 (695)
Q Consensus 350 ~~~~~G~tf~~~~~~~~-~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 424 (695)
.+++.|++..++ ..+ .++|+.+++ ++ .++|.+++.+. .+|...+....++..+. ..- .. ++
T Consensus 162 ~s~~~g~~l~~l--~~~~~~~~~~vi~i~r~~~-~~~p~~~~~l~-~gD~l~v~g~~~~l~~~---~~~-~~----~~-- 227 (453)
T PRK09496 162 GSPLVGKPLSDL--REHFPDIDVRVVAIFRGGR-LIIPRGDTVIE-AGDEVYFIGAREHIRAV---MSE-FG----RL-- 227 (453)
T ss_pred CCccCCcCHHHh--hhhcCCCceEEEEEEECCE-EEcCCCCcEec-CCCEEEEEeCHHHHHHH---HHH-hC----cc--
Confidence 257899999998 444 568887776 55 56899999998 57777554432211110 000 00 00
Q ss_pred ccCCCCCcccccccccccccccchhhhhhhcccccccceeecceeeeccccccccccCCceehhhHHhhhc-cCCceEEe
Q psy8620 425 HKADAPPSKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLA-FYSVEFYL 503 (695)
Q Consensus 425 ~~~~~~~~~~~i~G~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~-~fp~v~~~ 503 (695)
.....++.++||-.....+. ..|.+.+.. +. +..+.. +..+.+. .++.+.++
T Consensus 228 ---~~~~~~iiIiG~G~~g~~l~--~~L~~~~~~----v~-------vid~~~-----------~~~~~~~~~~~~~~~i 280 (453)
T PRK09496 228 ---EKPVKRVMIVGGGNIGYYLA--KLLEKEGYS----VK-------LIERDP-----------ERAEELAEELPNTLVL 280 (453)
T ss_pred ---CCCCCEEEEECCCHHHHHHH--HHHHhCCCe----EE-------EEECCH-----------HHHHHHHHHCCCCeEE
Confidence 01246678899876553222 112211111 11 111100 0111111 12334444
Q ss_pred c----ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHH
Q psy8620 504 F----SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYA 579 (695)
Q Consensus 504 ~----~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~ 579 (695)
. +.+.|+++++.+|+.|+++.++ |..++++....+..++. ++|++..++.+.+.++..+.|.
T Consensus 281 ~gd~~~~~~L~~~~~~~a~~vi~~~~~-----------~~~n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~-- 346 (453)
T PRK09496 281 HGDGTDQELLEEEGIDEADAFIALTND-----------DEANILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDI-- 346 (453)
T ss_pred ECCCCCHHHHHhcCCccCCEEEECCCC-----------cHHHHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCE--
Confidence 3 7788999999999999888666 56777777766776554 8999999998877776443331
Q ss_pred HhhhhhhHHhhhcCCcccccccccccccccccH-hhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCC-Ccc
Q psy8620 580 LHLSKMEKKEKERGSHISYMFRLPFAAGSVFSA-SMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITK-DDM 657 (695)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~fa~G~vfs~-~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~-~~~ 657 (695)
|+++ .+....+++....+.+..+.+. +. +...+..+.+++ ..+
T Consensus 347 -----------------------------vi~p~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~v~~~s~~ 391 (453)
T PRK09496 347 -----------------------------AISPRQATASEILRHVRRGDIVAVHSL--RR----GAAEAIEAVAHETSKV 391 (453)
T ss_pred -----------------------------EECHHHHHHHHHHHHhhccchhhhhhh--cC----CcEEEEEEEeCCCChh
Confidence 3443 3344566666677776655542 11 112344455643 446
Q ss_pred CCCcHHHHHHHHHhccCceeeEEEeecCCCCCCCCC
Q psy8620 658 WIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQ 693 (695)
Q Consensus 658 ~~~tf~~lf~~ll~~~~~i~iGlyR~~~~~~~~~~~ 693 (695)
.|++.+++ .+ . .+..+++++|.... ..|+++
T Consensus 392 ~g~~l~el--~l-~-~~~~i~~i~r~~~~-~~p~~~ 422 (453)
T PRK09496 392 VGKPLKDL--KL-P-KGVLIGAIVRGGEV-IIPTGD 422 (453)
T ss_pred ccCCHHHc--CC-C-CCCEEEEEEECCEE-EcCCCC
Confidence 78999999 22 3 48999999998776 445443
No 5
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=99.77 E-value=5.8e-19 Score=154.84 Aligned_cols=97 Identities=43% Similarity=0.731 Sum_probs=71.7
Q ss_pred chhhccCCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeecccccccccc
Q psy8620 240 NKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEE 319 (695)
Q Consensus 240 ~~~~~~gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~ 319 (695)
++.+.+++|+|||.+|+|.++||++|.|||++|++.||+++.+........++|+++|.+|
T Consensus 3 ~~~~~~~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G------------------- 63 (101)
T PF03493_consen 3 SKWHWKFADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRG------------------- 63 (101)
T ss_dssp TT--TTTT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHH-------------------
T ss_pred cccccccCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcC-------------------
Confidence 4566778999999999999999999999999999999999876544433337788777766
Q ss_pred CcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec
Q psy8620 320 GQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK 375 (695)
Q Consensus 320 ~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig 375 (695)
.+||||++.+++ .|.|++|.+++.++|+++|++|+|
T Consensus 64 ---------------~~~eIy~~~l~~-----~f~G~~F~~~~~~~~~~~~viLig 99 (101)
T PF03493_consen 64 ---------------AGNEIYTVKLSS-----AFVGMTFTEAARLLYEKFGVILIG 99 (101)
T ss_dssp ---------------HTBEEEEEE--G-----GGTTSBHHHHHHHHHHHS--EEEE
T ss_pred ---------------CCCEEEEEeCCh-----hhCCCcHHHHHHHHHHHcCcEEEE
Confidence 777888888754 589999999999999999999987
No 6
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.45 E-value=2.2e-12 Score=148.45 Aligned_cols=140 Identities=10% Similarity=0.056 Sum_probs=116.5
Q ss_pred cCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 113 QSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..++|+||||+|+.++.+.+.|++.. .++|++++++ +..+.. + +.+..++.||+++++.|++++++
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g-------~~vvvId~d~--~~~~~~-~----~~g~~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAG-------IPLVVIETSR--TRVDEL-R----ERGIRAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCC-------CCEEEEECCH--HHHHHH-H----HCCCeEEEcCCCCHHHHHhcCcc
Confidence 35799999999999999999998742 3677776543 233332 2 34789999999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCCh
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGA 270 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl 270 (695)
+|+++++. ..+|.+|...+.++|+.+|+.+|++++.++++...+ .|+|.|++|++..++.+++....|+.
T Consensus 481 ~a~~viv~--------~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~~~~ 552 (558)
T PRK10669 481 CARWLLLT--------IPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPA 552 (558)
T ss_pred ccCEEEEE--------cCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcCCCc
Confidence 99998884 346778888888899999999999999998886543 59999999999999999999999999
Q ss_pred HHHH
Q psy8620 271 STLV 274 (695)
Q Consensus 271 ~~li 274 (695)
+++.
T Consensus 553 ~~~~ 556 (558)
T PRK10669 553 GEVV 556 (558)
T ss_pred cccc
Confidence 8764
No 7
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.39 E-value=1.1e-11 Score=139.15 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=147.5
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
..+|++|||+|..+..+.+.|.+.. ..+++++..+ +..+.+.+. ..++.++.||+++.+.|+++++++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~-------~~v~vid~~~--~~~~~~~~~---~~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG-------YSVKLIERDP--ERAEELAEE---LPNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCH--HHHHHHHHH---CCCCeEEECCCCCHHHHHhcCCcc
Confidence 4799999999999999999988742 3677776443 223222110 136789999999999999999999
Q ss_pred ccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCChH
Q psy8620 194 AEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGAS 271 (695)
Q Consensus 194 A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl~ 271 (695)
|+++++++ ++|..|+..++.+|++++. ++++++.++++...+ .|+|.|+++..+.+..+++.+..|++.
T Consensus 298 a~~vi~~~--------~~~~~n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~~~~~ 368 (453)
T PRK09496 298 ADAFIALT--------NDDEANILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRRGDIV 368 (453)
T ss_pred CCEEEECC--------CCcHHHHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhccchh
Confidence 99988854 4578899999999999765 899999999886544 489999999999999999999998865
Q ss_pred HHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccc
Q psy8620 272 TLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFG 351 (695)
Q Consensus 272 ~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~ 351 (695)
.+... . . ...+++.+.+++ .+
T Consensus 369 ~~~~~-~-~------------------------------------------------------~~~~~~~~~v~~---~s 389 (453)
T PRK09496 369 AVHSL-R-R------------------------------------------------------GAAEAIEAVAHE---TS 389 (453)
T ss_pred hhhhh-c-C------------------------------------------------------CcEEEEEEEeCC---CC
Confidence 54321 0 0 112344444443 24
Q ss_pred cccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeecc
Q psy8620 352 EYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIPI 399 (695)
Q Consensus 352 ~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~~ 399 (695)
.+.|+++.|+ .+. .|+.+++ |+. ++|.++++++ .+|...++.
T Consensus 390 ~~~g~~l~el--~l~--~~~~i~~i~r~~~~-~~p~~~~~l~-~gD~l~v~~ 435 (453)
T PRK09496 390 KVVGKPLKDL--KLP--KGVLIGAIVRGGEV-IIPTGDTVIE-PGDHVIVFV 435 (453)
T ss_pred hhccCCHHHc--CCC--CCCEEEEEEECCEE-EcCCCCcEEC-CCCEEEEEE
Confidence 6899999998 332 4777765 565 7899999998 466664433
No 8
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.36 E-value=4.4e-12 Score=114.78 Aligned_cols=114 Identities=22% Similarity=0.296 Sum_probs=92.1
Q ss_pred EEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccEE
Q psy8620 118 VVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEAC 197 (695)
Q Consensus 118 vVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~av 197 (695)
|||||||..+..+++.|++. ..++++++..+ +..+.+. ..++.++.||+++++.|+++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-------~~~vvvid~d~--~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-------GIDVVVIDRDP--ERVEELR-----EEGVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-------TSEEEEEESSH--HHHHHHH-----HTTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCCHHHHHHHHHHHhC-------CCEEEEEECCc--HHHHHHH-----hcccccccccchhhhHHhhcCccccCEE
Confidence 68999999999999999983 13688887543 2233222 3468899999999999999999999999
Q ss_pred EEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhcc--CCCeEEeh
Q psy8620 198 FVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVK--FAEFIVCE 253 (695)
Q Consensus 198 iIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~~--gad~VI~~ 253 (695)
++++ ++|..|+..++.+|+++|+.++++++.++++...++ |+|.||.|
T Consensus 67 v~~~--------~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 67 VILT--------DDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp EEES--------SSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred EEcc--------CCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 9964 479999999999999999999999999999876654 89999976
No 9
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.35 E-value=9.1e-13 Score=110.86 Aligned_cols=59 Identities=25% Similarity=0.528 Sum_probs=52.7
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
.+.+++.||+||+++|+|||||||+.|.|+.||+++++.++.|+.+++..++.+++.+.
T Consensus 20 ~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 20 SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999987654
No 10
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=2.5e-11 Score=122.91 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=148.8
Q ss_pred eEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 117 HVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 117 HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
.++|+|-|+.+.++++.|.+.. ..||+++..+ +..+..+.. ......+.||+++++.|++|++++|++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g-------~~Vv~Id~d~--~~~~~~~~~---~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG-------HNVVLIDRDE--ERVEEFLAD---ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC-------CceEEEEcCH--HHHHHHhhh---hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 4789999999999999998853 2566665443 223322210 246889999999999999999999999
Q ss_pred EEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhcc--CCCeEEehHHHHHHHHHHHhcCCChHHHH
Q psy8620 197 CFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVK--FAEFIVCEDELKYALLANNCTCPGASTLV 274 (695)
Q Consensus 197 viIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~~--gad~VI~~~el~~~lLa~s~~~PGl~~li 274 (695)
+++. +.+|..|+..++.+++...-.+++|++.++++...+. |+|.+|+|+...+..+++....||+..++
T Consensus 70 vva~--------t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~ 141 (225)
T COG0569 70 VVAA--------TGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTPGALDVL 141 (225)
T ss_pred EEEe--------eCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcCCChheEE
Confidence 9885 4578888888877777656678999999998876553 79999999999999999999999986655
Q ss_pred HHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCccccccc
Q psy8620 275 TLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYE 354 (695)
Q Consensus 275 ~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~ 354 (695)
..-- ...++..+.+.+ .+++.
T Consensus 142 ~~~~--------------------------------------------------------~~~~~~~~~v~~---~~~~~ 162 (225)
T COG0569 142 ELAG--------------------------------------------------------GDAEVIEEKVAE---DSPLA 162 (225)
T ss_pred eecC--------------------------------------------------------CcceEEEEEecC---CCccC
Confidence 4211 123344444433 24799
Q ss_pred CcchhHHHhhhhhhhcceeec---ce-EEEecccceecccCCCeeee
Q psy8620 355 GKSFTYASFHSHRKYGMKITK---DD-MWIRTYGRLYQKLCSTTCEI 397 (695)
Q Consensus 355 G~tf~~~~~~~~~~~gi~lig---~~-i~lNP~~~~i~~~~~~~~~~ 397 (695)
|+++.|+ ..+.++++.+++ +. ..++|.+++.++ .+|...+
T Consensus 163 g~~L~el--~~~~~~~~~vvai~r~~~~~~~p~g~~~l~-~gD~l~v 206 (225)
T COG0569 163 GKTLREL--DLRLPYDVNVIAIKRGGNELIIPRGDTTLE-AGDRLIV 206 (225)
T ss_pred CcCHHHh--cccCCCCcEEEEEecCCCceecCCCCCEec-CCCEEEE
Confidence 9999999 466668887776 33 788899999998 4666643
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.29 E-value=7.7e-11 Score=136.24 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=101.9
Q ss_pred cCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 113 QSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..++||||||+|+.++.+.+.|.+. +.++++++.++ +.++.. + +.+..++.||+++++.|++|+++
T Consensus 398 ~~~~~vII~G~Gr~G~~va~~L~~~-------g~~vvvID~d~--~~v~~~-~----~~g~~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 398 DDKPQVIIVGFGRFGQVIGRLLMAN-------KMRITVLERDI--SAVNLM-R----KYGYKVYYGDATQLELLRAAGAE 463 (601)
T ss_pred cccCCEEEecCchHHHHHHHHHHhC-------CCCEEEEECCH--HHHHHH-H----hCCCeEEEeeCCCHHHHHhcCCc
Confidence 3579999999999999999999874 23677776543 234433 2 34788999999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHH
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLAN 263 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~ 263 (695)
+|+++++. .++|..|+.++..+|+.+|+++|++++.++++...+ .|+|.|+.+.--.+-.|+.
T Consensus 464 ~A~~vv~~--------~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~ 528 (601)
T PRK03659 464 KAEAIVIT--------CNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGR 528 (601)
T ss_pred cCCEEEEE--------eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHH
Confidence 99998884 457899999999999999999999999999887554 5899887654444444443
No 12
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.27 E-value=5.4e-11 Score=110.71 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=111.0
Q ss_pred ccEEEEeccCCCCCCccchHHHHHHHHHHhhhC--CCccEEEEEeCccchhhcc--CCCeEEehHHHHHHHHHHHhcCCC
Q psy8620 194 AEACFVLAARNYSDKTAADEHTILRSWAVKDFA--PDVPQYVQIFRPENKLHVK--FAEFIVCEDELKYALLANNCTCPG 269 (695)
Q Consensus 194 A~aviIla~~~~~d~~~~D~~~i~~~laik~~~--p~i~Iiv~i~~~~~~~~~~--gad~VI~~~el~~~lLa~s~~~PG 269 (695)
|+++|||+.+. |+.+.|+++++.+|++..+. -..++||++.+..+...++ +++.|-..+++.++||.|+.++||
T Consensus 1 ARaIIiL~~k~--d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ~G 78 (206)
T PF06241_consen 1 ARAIIILAEKE--DRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQPG 78 (206)
T ss_pred CceEEEeCCCC--CcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccCcc
Confidence 78999999865 46789999999999988763 3689999999999987765 678887789999999999999999
Q ss_pred hHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcc
Q psy8620 270 ASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRF 349 (695)
Q Consensus 270 l~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~ 349 (695)
+..++.+|+.. ..+++|...
T Consensus 79 L~~Iy~~iL~~------------------------------------------------------~k~vf~l~~------ 98 (206)
T PF06241_consen 79 LAQIYEDILGF------------------------------------------------------EKNVFNLKR------ 98 (206)
T ss_pred HHHHHHHHhCC------------------------------------------------------CCcEEEEec------
Confidence 99999999976 235677554
Q ss_pred cccccCcchhHHHhhhh--hhhcceeecceEEEecccceecccCCCeeeecccc
Q psy8620 350 FGEYEGKSFTYASFHSH--RKYGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGI 401 (695)
Q Consensus 350 ~~~~~G~tf~~~~~~~~--~~~gi~lig~~i~lNP~~~~i~~~~~~~~~~~~~~ 401 (695)
++++.|+.|.|+-...- --+|+. -+|++.+||..++++.+ +|.. +++|.
T Consensus 99 ~P~L~Gm~y~dvr~~Fpdav~CGv~-r~GkI~fhP~Dd~vL~e-~Dkl-LvIa~ 149 (206)
T PF06241_consen 99 WPQLDGMKYRDVRRSFPDAVVCGVK-RDGKIVFHPDDDYVLRE-GDKL-LVIAP 149 (206)
T ss_pred CcccCCcCHHHHHhcCCcceeeeee-eCCeeEECCCCCceeec-CCEE-EEEee
Confidence 45699999999732211 112221 23899999999999985 4544 34563
No 13
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.22 E-value=1.5e-10 Score=134.15 Aligned_cols=131 Identities=10% Similarity=0.011 Sum_probs=104.2
Q ss_pred cCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 113 QSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..++||||||+|+.++.+.+.|.+. +.++++++.++ +..+.. + +.+..++.||+++++.|++++++
T Consensus 398 ~~~~~vII~G~Gr~G~~va~~L~~~-------g~~vvvID~d~--~~v~~~-~----~~g~~v~~GDat~~~~L~~agi~ 463 (621)
T PRK03562 398 EQQPRVIIAGFGRFGQIVGRLLLSS-------GVKMTVLDHDP--DHIETL-R----KFGMKVFYGDATRMDLLESAGAA 463 (621)
T ss_pred cccCcEEEEecChHHHHHHHHHHhC-------CCCEEEEECCH--HHHHHH-H----hcCCeEEEEeCCCHHHHHhcCCC
Confidence 3479999999999999999999873 24677776443 234332 2 24678999999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHh
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNC 265 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~ 265 (695)
+|+++++. .++|..|+.++..+|+.+|+++|+++..++++...+ .|+|.|+.+..-.+..+++.+
T Consensus 464 ~A~~vvv~--------~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~ 530 (621)
T PRK03562 464 KAEVLINA--------IDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLV 530 (621)
T ss_pred cCCEEEEE--------eCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHH
Confidence 99998884 457899999999999999999999999999887554 489998766655556566554
No 14
>KOG3713|consensus
Probab=99.18 E-value=6.4e-11 Score=127.23 Aligned_cols=90 Identities=22% Similarity=0.385 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhhc---cCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHH
Q psy8620 9 AMQKSQSALSQQLMILSAT--FVCGIQHFQR---AGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVAL 83 (695)
Q Consensus 9 ~~~r~~~~l~~~l~il~~~--l~~g~~~~~~---~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi 83 (695)
++++....+..+++.++.. +...+.++.+ ++..+.|..-++||++||||||||||.+|.|++||++....|+.|+
T Consensus 337 Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GV 416 (477)
T KOG3713|consen 337 TLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGV 416 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhH
Confidence 4444444444443333222 2334445433 4445788999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHH
Q psy8620 84 IVLPTQFEQLAFTWM 98 (695)
Q Consensus 84 ~~~~~~i~~l~~~~~ 98 (695)
++++.-+..|.+-+.
T Consensus 417 LvlAlPItiIv~nF~ 431 (477)
T KOG3713|consen 417 LVLALPITIIVNNFS 431 (477)
T ss_pred HHhhcchHhHhhhHH
Confidence 998777766665543
No 15
>KOG1420|consensus
Probab=99.06 E-value=2.4e-09 Score=115.02 Aligned_cols=250 Identities=21% Similarity=0.230 Sum_probs=170.6
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhc-------CCCCCcceEEEecCCC-ccHHHHHHhcCCccccceEEEEcCCCChHh
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYA-------HPLLQNYYVVLLSPME-LDTTMRMILQVPIWAQRVIYIQGSCLKDGD 185 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~-------~~~~~~~~VVil~~~e-~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~d 185 (695)
.++|||||=+... ++-+--|+++.- |. .+-.+||++.+.| ...+++.+-+.| ++.++.|+|+...|
T Consensus 732 lnghvvvclfad~-dspliglrnlvmplrasnfhy-helkhvvivgsieylrrewktl~nlp----kisilngsplsrad 805 (1103)
T KOG1420|consen 732 LNGHVVVCLFADV-DSPLIGLRNLVMPLRASNFHY-HELKHVVIVGSIEYLRREWKTLHNLP----KISILNGSPLSRAD 805 (1103)
T ss_pred ecCcEEEEEecCC-CCchhhhhhheeeccccccch-hheeeEEEEccHHHHHHHHHHHhCCC----ceeecCCCCCchhh
Confidence 5899999987543 332233444321 10 1124788887755 334455444433 88999999999999
Q ss_pred HhhcccccccEEEEeccCC--CCCCccchHHHHHHHHHHhhhC-----------------C-------------------
Q psy8620 186 LARARMNEAEACFVLAARN--YSDKTAADEHTILRSWAVKDFA-----------------P------------------- 227 (695)
Q Consensus 186 L~ra~i~~A~aviIla~~~--~~d~~~~D~~~i~~~laik~~~-----------------p------------------- 227 (695)
|+.+++.-++.|+|++.+. ..|+.-.|.+.|+..|.+|.+. |
T Consensus 806 lravninlcdmcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~ 885 (1103)
T KOG1420|consen 806 LRAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGV 885 (1103)
T ss_pred hhhccccccceeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCccccc
Confidence 9999999999999998863 4567789999999999999751 1
Q ss_pred CccEEEEEeCccchhhcc----------------CCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChh
Q psy8620 228 DVPQYVQIFRPENKLHVK----------------FAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQE 291 (695)
Q Consensus 228 ~i~Iiv~i~~~~~~~~~~----------------gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~ 291 (695)
++|+|.++.+..|...+. +|...-..-.+..+||.....+....|++..|.+.+.. +..|
T Consensus 886 nvpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggat----pele 961 (1103)
T KOG1420|consen 886 NVPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGAT----PELE 961 (1103)
T ss_pred CchhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCC----hhhH
Confidence 357777777776654432 22222223456778999999999999999999977432 2222
Q ss_pred HHHHHhcCC-CCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhc
Q psy8620 292 EWHRLYGRC-SGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYG 370 (695)
Q Consensus 292 ~w~~~y~~g-~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~g 370 (695)
.... .+.| .|..--.+.||++ +.+.+.++.+-+.+|..--+|-.+++.++.+.+.||
T Consensus 962 lila-egaglrggystpetlsnr---------------------drcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~yg 1019 (1103)
T KOG1420|consen 962 LILA-EGAGLRGGYSTPETLSNR---------------------DRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYG 1019 (1103)
T ss_pred HHHh-ccccccCCCCChhhhccc---------------------cceeeeeeeeecCchhhhccCCchHHHHHHHHHHhC
Confidence 2222 2333 3333444555554 667888888877666555678889999999999999
Q ss_pred ceeec----------------ceEEEecccceecccCCCeee
Q psy8620 371 MKITK----------------DDMWIRTYGRLYQKLCSTTCE 396 (695)
Q Consensus 371 i~lig----------------~~i~lNP~~~~i~~~~~~~~~ 396 (695)
+.++| .-++-||+.+.-+.+ .|..+
T Consensus 1020 mlciglyrlrd~~~s~~~s~kryvitnpp~ef~l~p-td~vf 1060 (1103)
T KOG1420|consen 1020 MLCIGLYRLRDAHLSTSQSTKRYVITNPPYEFELVP-TDLVF 1060 (1103)
T ss_pred ceeEEEeeeeccccCcchhhceeEecCCchhheecc-cceEE
Confidence 99987 137889988877664 44443
No 16
>KOG1419|consensus
Probab=99.00 E-value=4e-10 Score=121.27 Aligned_cols=60 Identities=20% Similarity=0.394 Sum_probs=54.3
Q ss_pred CCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHH
Q psy8620 39 GHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 39 ~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
+.++-+|.||+||.++|+|||||||.+|+||+||+++..+-++|+-+|+.-.+.|.+.+.
T Consensus 264 n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfA 323 (654)
T KOG1419|consen 264 NDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFA 323 (654)
T ss_pred cccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhh
Confidence 357789999999999999999999999999999999999999999999888887776653
No 17
>KOG1545|consensus
Probab=98.86 E-value=1.8e-09 Score=110.50 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=46.9
Q ss_pred cCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHH
Q psy8620 38 AGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQL 93 (695)
Q Consensus 38 ~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l 93 (695)
++..+-+..|||||++||||||||||.+|.|..||++.-+..+.|+..++.-+..|
T Consensus 387 ~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 387 PESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred CccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 44567889999999999999999999999999999998888788887765444433
No 18
>KOG4404|consensus
Probab=98.71 E-value=2.5e-08 Score=101.59 Aligned_cols=68 Identities=25% Similarity=0.533 Sum_probs=55.4
Q ss_pred HHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccC--------CcccchhHHHhHHHHHHhhccchHHHHHHHH
Q psy8620 29 VCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPD--------IWPSQLYMVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 29 ~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~--------t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
.+|...|. .-|+|+||||+||+++|+||+||||.++. .++-+.+..++|++|+.++...++.+.-.+.
T Consensus 173 ~~gaa~fs--~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 173 CCGAAMFS--SVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred HhhHHHhh--cccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 36899999999999999999999999973 2455788999999999999999887765544
No 19
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.67 E-value=1.8e-08 Score=121.21 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=51.0
Q ss_pred hhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHH
Q psy8620 45 LFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWME 99 (695)
Q Consensus 45 ~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~ 99 (695)
|..|+||+++|||||||||++|.|..+|+++++++++|++++++.++.+++.+.+
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447999999999999999999999999999999999999999999999987654
No 20
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.6e-06 Score=84.04 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=112.7
Q ss_pred ccCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 112 AQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 112 ~~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
....+|+++||++..+..+...|.... ..+++++..+ ...+.. + ..++.++.||+++.+.|.++++
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~~-------~~~~vi~~~~--~~~~~~-~----~~~~~~~~gd~~~~~~l~~a~~ 83 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLASG-------IPVVVIDSDE--DRVELL-R----ELGLLVVLGDATREEVLEAAGI 83 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHCC-------CCEEEEECCH--HHHHHH-H----HCCCcEEEecCCCHHHHHhcCh
Confidence 457899999999999999988887642 2677776543 223322 1 3467899999999999999999
Q ss_pred ccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeC-ccchhh--ccCCCeEEehHHHHHHHHHHHhcCC
Q psy8620 192 NEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFR-PENKLH--VKFAEFIVCEDELKYALLANNCTCP 268 (695)
Q Consensus 192 ~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~-~~~~~~--~~gad~VI~~~el~~~lLa~s~~~P 268 (695)
++|+++++. ..++..++..+..++.++|+++++++..+ ..+... ..|++.++++....+..++.....+
T Consensus 84 ~~a~~vi~~--------~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~ 155 (212)
T COG1226 84 ERARAVIVT--------LSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVG 155 (212)
T ss_pred hheeEEEEe--------cCCHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcc
Confidence 999999984 45788888999999999999999999988 444433 3599999999998988888887776
Q ss_pred ChHHHHHHHh
Q psy8620 269 GASTLVTLLL 278 (695)
Q Consensus 269 Gl~~li~~Ll 278 (695)
..........
T Consensus 156 ~~~~~~~~~~ 165 (212)
T COG1226 156 LGGDSVEAIL 165 (212)
T ss_pred cCCchhhhhh
Confidence 6655444433
No 21
>KOG1418|consensus
Probab=98.27 E-value=6.8e-07 Score=99.16 Aligned_cols=61 Identities=13% Similarity=0.347 Sum_probs=55.7
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMER 100 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~ 100 (695)
...|+|.+|+||+++++||+|||+++|.|..||++++++.++|+.++...++.+...+.+.
T Consensus 111 ~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 111 TQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred CcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999999988888888776654
No 22
>KOG4390|consensus
Probab=98.25 E-value=2.8e-07 Score=95.43 Aligned_cols=57 Identities=25% Similarity=0.537 Sum_probs=48.4
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhh----ccchHHHHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVL----PTQFEQLAFTW 97 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~----~~~i~~l~~~~ 97 (695)
.+.+...|||+++|||||.||||.+|.|..|++|.-+.-+.|+.++ |..++.++.++
T Consensus 353 ~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 353 KFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred ccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 5788999999999999999999999999999999988888888776 44555555544
No 23
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.02 E-value=2.4e-06 Score=91.16 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=71.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhc----cC--------------CCCCChhhhhhheeeeeecc
Q psy8620 1 MFQNDLHRAMQKSQSALSQQLMILSAT---FVCGIQHFQR----AG--------------HRHLNLFQATYYVVVTFSTV 59 (695)
Q Consensus 1 ~~~~~~~~~~~r~~~~l~~~l~il~~~---l~~g~~~~~~----~~--------------~~~~~~~da~Yf~vvT~sTV 59 (695)
.|+.|++.++-...++.+..++++..+ ++.|+++|.- ++ ..-.+|.+||+|++.|+|||
T Consensus 20 ~~~~D~~~tlv~~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTI 99 (336)
T PF01007_consen 20 RYLRDLYTTLVDMSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTI 99 (336)
T ss_dssp CCCHTHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT-
T ss_pred hHHHHHHhhccCCCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEe
Confidence 378999998877776654444433222 2445444421 00 11258999999999999999
Q ss_pred CcCC--cccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEcc
Q psy8620 60 GYGD--FVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCST 123 (695)
Q Consensus 60 GYGD--i~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~ 123 (695)
|||. +.|..+.+-+++++-.++|+++.+..+|.+-.-+ .+ .+-+.....-.++.||+-.
T Consensus 100 GYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~----sr-P~~R~~tI~FS~~AVI~~~ 160 (336)
T PF01007_consen 100 GYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF----SR-PKKRASTILFSKKAVIAPR 160 (336)
T ss_dssp --SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TS-CCCGGGSEEE-SSEEEEEE
T ss_pred ccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-cccccceEEEEeeeEEeec
Confidence 9998 5678888888888888999998888888664332 11 1100011235677777754
No 24
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=97.96 E-value=4.3e-05 Score=71.84 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=102.0
Q ss_pred cCeEEEEecCCCCCcccCcccchHHHHHHHHHHHh--cCCCcEEEeecccccccccccccchhHHHhhhhhhHHhhhcCC
Q psy8620 517 AENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKF--FPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGS 594 (695)
Q Consensus 517 a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~--~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~~~~~~~~~~~ 594 (695)
|.++|||+.. ++.+.+|+++.+.++++... .-+.++|+|+.+..|-+++...+....
T Consensus 1 ARaIIiL~~k-----~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~V---------------- 59 (206)
T PF06241_consen 1 ARAIIILAEK-----EDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKV---------------- 59 (206)
T ss_pred CceEEEeCCC-----CCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCcee----------------
Confidence 6788999766 77899999999888776543 348999999999999999885544432
Q ss_pred cccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCCCccCCCcHHHHHHHHHhccC
Q psy8620 595 HISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGRLYQKLCSTTC 674 (695)
Q Consensus 595 ~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~~~~~~~tf~~lf~~ll~~~~ 674 (695)
+ +| .++.++||.|-.-.|+..++++.|||-+... =+++. .| .+-|..|+|+...+ ..
T Consensus 60 --e----------tV--~dv~skL~VQCsRQ~GL~~Iy~~iL~~~k~v--f~l~~--~P--~L~Gm~y~dvr~~F---pd 116 (206)
T PF06241_consen 60 --E----------TV--HDVISKLMVQCSRQPGLAQIYEDILGFEKNV--FNLKR--WP--QLDGMKYRDVRRSF---PD 116 (206)
T ss_pred --e----------eH--HHHHHHHHHHhccCccHHHHHHHHhCCCCcE--EEEec--Cc--ccCCcCHHHHHhcC---Cc
Confidence 1 13 7889999999999999999999999875432 12333 23 37789999996555 35
Q ss_pred ceeeEEEeecCCCCCCCCC
Q psy8620 675 EIPIGIYRTQDMSSIESPQ 693 (695)
Q Consensus 675 ~i~iGlyR~~~~~~~~~~~ 693 (695)
.+|-|+||.....-||.+.
T Consensus 117 av~CGv~r~GkI~fhP~Dd 135 (206)
T PF06241_consen 117 AVVCGVKRDGKIVFHPDDD 135 (206)
T ss_pred ceeeeeeeCCeeEECCCCC
Confidence 7999999988887777654
No 25
>KOG0498|consensus
Probab=97.90 E-value=4.1e-06 Score=96.52 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=52.2
Q ss_pred hhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHH
Q psy8620 45 LFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWME 99 (695)
Q Consensus 45 ~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~ 99 (695)
|+-|+||++.|||||||||..|.++...+|+|+++++|+++++++||.++..+++
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 6779999999999999999999999999999999999999999999999988765
No 26
>KOG4404|consensus
Probab=97.70 E-value=2.4e-05 Score=80.20 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=45.4
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLA 94 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~ 94 (695)
..|.|..||||+.+.+||||||-.+|.|..||+|+|++.++|+..--..+..+.
T Consensus 77 ~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 77 PQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred cccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 579999999999999999999999999999999999998888754433444333
No 27
>KOG0501|consensus
Probab=97.68 E-value=2.1e-05 Score=85.61 Aligned_cols=63 Identities=17% Similarity=0.419 Sum_probs=56.8
Q ss_pred hhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCc
Q psy8620 45 LFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSY 107 (695)
Q Consensus 45 ~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~ 107 (695)
|..++||+|..|||||||.+.|.|...++|.+.+|++|-.+.++.+|.+++++++......+|
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rY 486 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRY 486 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHH
Confidence 789999999999999999999999999999999999999999999999999887765444444
No 28
>KOG1418|consensus
Probab=97.43 E-value=5.7e-05 Score=83.74 Aligned_cols=50 Identities=22% Similarity=0.494 Sum_probs=42.7
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccc--------hhHHHhHHHHHHhhccch
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQ--------LYMVIMICVALIVLPTQF 90 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gr--------i~~i~~i~~gi~~~~~~i 90 (695)
++|+|++||||+++|+|||||||++|.+..++ .+..+++++|...+....
T Consensus 239 e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 239 EQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 56999999999999999999999999998877 467777777777766555
No 29
>KOG3684|consensus
Probab=97.36 E-value=0.00017 Score=77.42 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=50.5
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTW 97 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~ 97 (695)
...+|.++.|+..+|+-++||||++|.|..||.++++.-++|.+..+.++..++.-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 345699999999999999999999999999999999999999988888888776543
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.05 E-value=0.0013 Score=72.14 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=55.9
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDK 577 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d 577 (695)
+.+.|++||+++|+.++++.++ |.+++++..++++++|++++|++..+++|.+.++..++|.
T Consensus 291 d~e~L~~AgI~~A~aVI~~t~d-----------D~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~ 352 (393)
T PRK10537 291 DSAVLKKAGAARARAILALRDN-----------DADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDM 352 (393)
T ss_pred CHHHHHhcCcccCCEEEEcCCC-----------hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCE
Confidence 7788999999999999998877 8999999999999999999999999999998887665553
No 31
>KOG3827|consensus
Probab=96.69 E-value=0.0073 Score=63.89 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhc----cC----C----------CCCChhhhhhheeeeeeccC
Q psy8620 2 FQNDLHRAMQKSQSALSQQLMILSAT---FVCGIQHFQR----AG----H----------RHLNLFQATYYVVVTFSTVG 60 (695)
Q Consensus 2 ~~~~~~~~~~r~~~~l~~~l~il~~~---l~~g~~~~~~----~~----~----------~~~~~~da~Yf~vvT~sTVG 60 (695)
|+.|++-++-..+++...+++.+.++ +++|+.+|.- ++ . .-.+|..||-|++-|=+|+|
T Consensus 49 Yl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIG 128 (400)
T KOG3827|consen 49 YLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIG 128 (400)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeee
Confidence 89999999977777655555544333 2556555531 10 0 12358899999999999999
Q ss_pred cCCcccCC--cccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEc
Q psy8620 61 YGDFVPDI--WPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCS 122 (695)
Q Consensus 61 YGDi~P~t--~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G 122 (695)
||--++.. +.+-+..++-.++|+++=+..+|.+..-+..-+|+.. .-.-++|-|||-
T Consensus 129 YG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAe-----Tl~FS~~AVI~~ 187 (400)
T KOG3827|consen 129 YGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAE-----TLIFSDHAVIAL 187 (400)
T ss_pred ccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh-----eeeeccceEEEe
Confidence 99776643 4555556666677777777777655433222111111 123567888874
No 32
>KOG3193|consensus
Probab=96.56 E-value=0.0031 Score=68.60 Aligned_cols=132 Identities=24% Similarity=0.303 Sum_probs=95.9
Q ss_pred cccceEEEEcCCCChHhHhhcccccccEEEEeccCC-CCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhh----
Q psy8620 169 WAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARN-YSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLH---- 243 (695)
Q Consensus 169 ~~~~v~~i~Gd~~~~~dL~ra~i~~A~aviIla~~~-~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~---- 243 (695)
|...|.++.|+.-+-++|.|||+..|..|+++-... ..+...+|-.||.++-.+.++.|.++.|.++....|...
T Consensus 760 yfp~vywm~g~v~~ld~llragvs~ae~vvvvke~a~~aee~tadcntii~vq~~~r~fp~lr~itelt~atnmrf~qf~ 839 (1087)
T KOG3193|consen 760 YFPDVYWMKGKVGNLDCLLRAGVSSAEHVVVVKETAVMAEEHTADCNTIITVQKIHRMFPRLRMITELTHATNMRFVQFN 839 (1087)
T ss_pred hcchhhhhhcCcCcHHHHHHhcccccceEEEEehhhhhhhhhccccchhhhHHHHHHhchhHHHHHHHhhhccceEEeec
Confidence 456789999999999999999999999999973321 223345788899999999999998877666654433210
Q ss_pred --------c--------------------cCCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCC-------CC
Q psy8620 244 --------V--------------------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEG-------QI 288 (695)
Q Consensus 244 --------~--------------------~gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~-------~~ 288 (695)
+ .+|..-+....+..+||-|+...|-+.+++..|+.-.....+ -.
T Consensus 840 ~h~~ysl~~sr~ekker~rgsh~~~mfrlpfa~g~vfsa~mld~llyqa~ik~~vv~~vrlllgidq~~~~g~lts~~it 919 (1087)
T KOG3193|consen 840 PHNAYSLAQSRFEKKERKRGSHMPFMFRLPFAQGGVFSANMLDRLLYQAIIKPFVVDLVRLLLGIDQHSDGGYLTSFVIT 919 (1087)
T ss_pred CcchhHHHHHHHHHHHhhccCCCceEEeccccccceeeHHHHHHHHHHHHhhHHHHHHHHHHhccccCCCCceEEEEEEe
Confidence 0 133444556668889999999999999999999964321111 12
Q ss_pred ChhHHHHHhcCC
Q psy8620 289 SQEEWHRLYGRC 300 (695)
Q Consensus 289 ~~~~w~~~y~~g 300 (695)
..+-|++.|++-
T Consensus 920 ~dd~wir~ygrl 931 (1087)
T KOG3193|consen 920 SDDLWIRNYGRL 931 (1087)
T ss_pred ccchhhHHHHHH
Confidence 457899999753
No 33
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.11 E-value=0.008 Score=53.91 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=54.9
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccch
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQD 576 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~ 576 (695)
+.+.|++||+.+|+.++++.++ |..++.+++.+++++|..++++.+.++++.+.++..++|
T Consensus 51 ~~~~l~~a~i~~a~~vv~~~~~-----------d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 51 DPEVLERAGIEKADAVVILTDD-----------DEENLLIALLARELNPDIRIIARVNDPENAELLRQAGAD 111 (116)
T ss_dssp SHHHHHHTTGGCESEEEEESSS-----------HHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-S
T ss_pred hhhHHhhcCccccCEEEEccCC-----------HHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcC
Confidence 7888999999999999999887 899999999999999999999999999998888755544
No 34
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.0046 Score=58.04 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=40.8
Q ss_pred ccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeecc
Q psy8620 351 GEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIPI 399 (695)
Q Consensus 351 ~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~~ 399 (695)
+++.|++++|. +++.++|++++| ++.++||+|+.+++ .+|+.+++.
T Consensus 96 s~~~GksiGdl--~irq~TGaTIIAI~r~~e~I~SPgPy~vle-~gDtlvviG 145 (162)
T COG0490 96 SPFIGKTIGDL--NIRQNTGATVIAIVRNEEKILSPGPYTVLE-AGDTLVVIG 145 (162)
T ss_pred CcccCcchhhc--ccccccCcEEEEEEecCcEecCCCchhhhc-CCCEEEEEe
Confidence 56899999999 999999999998 89999999999998 688886543
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=95.66 E-value=0.024 Score=55.14 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=40.2
Q ss_pred CCChhhhhhheeeeeeccCcCCcccC-----CcccchhH-HHhHHHHHHhhccchHH
Q psy8620 42 HLNLFQATYYVVVTFSTVGYGDFVPD-----IWPSQLYM-VIMICVALIVLPTQFEQ 92 (695)
Q Consensus 42 ~~~~~da~Yf~vvT~sTVGYGDi~P~-----t~~gri~~-i~~i~~gi~~~~~~i~~ 92 (695)
..++..|+|+++.++||.|+||..|. ++.+.++. ++.++++++++...++.
T Consensus 143 f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 143 FDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 36799999999999999999999987 78888887 55555666666665553
No 36
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.12 Score=52.53 Aligned_cols=140 Identities=19% Similarity=0.102 Sum_probs=98.3
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHHHhhhh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSK 584 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~ 584 (695)
+.+.|++||+..||.+|+...+ |-..++......+.+.--++|.-..++.+.+.+...+.+.
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~-----------d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~------- 116 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGN-----------DEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADV------- 116 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCC-----------CHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcE-------
Confidence 7888999999999999999877 6666666666666677788899988888887776433221
Q ss_pred hhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCC-CccCCCcHH
Q psy8620 585 MEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITK-DDMWIRTYG 663 (695)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~-~~~~~~tf~ 663 (695)
.+.........+++....|.+.+++..--| ...+-...+.. ..++|+|=.
T Consensus 117 -----------------------ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~------~~~~~~~~v~~~~~~~g~~L~ 167 (225)
T COG0569 117 -----------------------IISPEKLAAKRLARLIVTPGALDVLELAGG------DAEVIEEKVAEDSPLAGKTLR 167 (225)
T ss_pred -----------------------EECHHHHHHHHHHHHhcCCChheEEeecCC------cceEEEEEecCCCccCCcCHH
Confidence 144555566688888888887777663211 12233334433 468999999
Q ss_pred HHHHHHHhccCceeeEEEeecCCCCCCCCC
Q psy8620 664 RLYQKLCSTTCEIPIGIYRTQDMSSIESPQ 693 (695)
Q Consensus 664 ~lf~~ll~~~~~i~iGlyR~~~~~~~~~~~ 693 (695)
++- +....+.+.+++||..+....|.|+
T Consensus 168 el~--~~~~~~~~vvai~r~~~~~~~p~g~ 195 (225)
T COG0569 168 ELD--LRLPYDVNVIAIKRGGNELIIPRGD 195 (225)
T ss_pred Hhc--ccCCCCcEEEEEecCCCceecCCCC
Confidence 996 5555789999999988544444443
No 37
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=94.03 E-value=0.14 Score=44.92 Aligned_cols=78 Identities=19% Similarity=0.132 Sum_probs=55.6
Q ss_pred ccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCC------C----------CcceeeeeeCCCccCCCcHHHH
Q psy8620 602 LPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAP------G----------SGFLTSMKITKDDMWIRTYGRL 665 (695)
Q Consensus 602 ~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~------~----------~~~l~~~~i~~~~~~~~tf~~l 665 (695)
..+|...|.-..+-..||+|+-.-|++.+++-.|+...... . ...+-.+++| ..+.|.||.++
T Consensus 7 ~~~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~-~~f~G~~F~~~ 85 (101)
T PF03493_consen 7 WKFADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLS-SAFVGMTFTEA 85 (101)
T ss_dssp TTTT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE---GGGTTSBHHHH
T ss_pred cccCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCC-hhhCCCcHHHH
Confidence 45566668888999999999999999999999888543221 0 1133344675 45999999999
Q ss_pred HHHHHhccCceeeEE
Q psy8620 666 YQKLCSTTCEIPIGI 680 (695)
Q Consensus 666 f~~ll~~~~~i~iGl 680 (695)
...+.++.|.|.|||
T Consensus 86 ~~~~~~~~~viLigI 100 (101)
T PF03493_consen 86 ARLLYEKFGVILIGI 100 (101)
T ss_dssp HHHHHHHS--EEEEE
T ss_pred HHHHHHHcCcEEEEe
Confidence 999999999999997
No 38
>KOG0499|consensus
Probab=92.32 E-value=0.084 Score=58.72 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=52.4
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWME 99 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~ 99 (695)
+++..|.-+|||++-|++|+| |.-.|+|...-+|..+--+.|+++|+.++|++-+.+..
T Consensus 399 g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 399 GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467789999999999999999 88899998888888888889999999999998877644
No 39
>KOG0500|consensus
Probab=91.48 E-value=0.1 Score=57.04 Aligned_cols=56 Identities=11% Similarity=0.249 Sum_probs=48.1
Q ss_pred hhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 45 LFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 45 ~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
|.-++||+-.|+||+| ---.|.|...-.|+++=.++|+.+|++.+|.+++.+.+..
T Consensus 184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn 239 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN 239 (536)
T ss_pred HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence 4458999999999999 4556888889999999999999999999999988876543
No 40
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=91.20 E-value=0.29 Score=39.53 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=34.2
Q ss_pred ccccCcchhHHHhhhhhhhcceeec---ceEEEecccceecccCCCeeeecc
Q psy8620 351 GEYEGKSFTYASFHSHRKYGMKITK---DDMWIRTYGRLYQKLCSTTCEIPI 399 (695)
Q Consensus 351 ~~~~G~tf~~~~~~~~~~~gi~lig---~~i~lNP~~~~i~~~~~~~~~~~~ 399 (695)
+.+.|+++.|+ .+.+++|+.+++ ++..+.|.++++++ .+|.+.++.
T Consensus 10 s~~~gk~l~el--~l~~~~~~~i~~i~R~~~~~~p~~~~~l~-~gD~l~v~g 58 (71)
T PF02080_consen 10 SPLVGKTLKEL--DLPERYGVRIVAIKRGGEIIIPDGDTVLQ-AGDILIVVG 58 (71)
T ss_dssp BTTTTEBHHHC--THHCHHTEEEEEEEETEEEES--TT-BE--TTEEEEEEE
T ss_pred CCCCCCCHHHC--CCCccCCEEEEEEEECCEEECCCCCCEEC-CCCEEEEEE
Confidence 57999999998 777788999887 77889999999998 577775543
No 41
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.49 E-value=0.51 Score=55.15 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=59.2
Q ss_pred eEEec--ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchh
Q psy8620 500 EFYLF--SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDK 577 (695)
Q Consensus 500 v~~~~--~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d 577 (695)
+++=. +.+.|++||+.+|+.+|+..++ |..++.+++.+++.+|+++||+-..++.|.+-++..++|.
T Consensus 446 v~~GDat~~~~L~~agi~~A~~vv~~~~d-----------~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~ 514 (601)
T PRK03659 446 VYYGDATQLELLRAAGAEKAEAIVITCNE-----------PEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQ 514 (601)
T ss_pred EEEeeCCCHHHHHhcCCccCCEEEEEeCC-----------HHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 44544 7788999999999999998877 7888899999999999999999999999999998777765
Q ss_pred H
Q psy8620 578 Y 578 (695)
Q Consensus 578 ~ 578 (695)
.
T Consensus 515 v 515 (601)
T PRK03659 515 F 515 (601)
T ss_pred E
Confidence 3
No 42
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=0.44 Score=45.77 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=48.0
Q ss_pred cCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeee
Q psy8620 335 SGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEI 397 (695)
Q Consensus 335 ~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~ 397 (695)
..-.|-++.+.+ .+.++|||++|+ .+..++|+-+|+ ++.+.||+.++.+. ++|+.+.
T Consensus 116 ~eE~I~rv~v~~---~S~l~gktLg~l--~L~t~tGvrVIAIRRG~~wi~~Pd~~~~Ir-~gDvLIa 176 (204)
T COG3273 116 SEEIIVRVRVEK---GSELAGKTLGEL--DLATNTGVRVIAIRRGERWIYGPDEDTKIR-EGDVLIA 176 (204)
T ss_pred hhhheEEEEecC---CCeecccchhhh--ccccccceEEEEEecCCccccCCCccceec-cCCEEEE
Confidence 556788888877 468999999999 888999998886 56999999999888 6888854
No 43
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.23 E-value=1.5 Score=50.93 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=48.1
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccch
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQD 576 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~ 576 (695)
+++.|++||+++|+.+++..++ |.++..+..++++.+|+.++|+-..++.|.+.++..+.|
T Consensus 470 ~~~~L~~a~i~~a~~viv~~~~-----------~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad 530 (558)
T PRK10669 470 NEEIMQLAHLDCARWLLLTIPN-----------GYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGAN 530 (558)
T ss_pred CHHHHHhcCccccCEEEEEcCC-----------hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCC
Confidence 7888999999999999888666 455555556677789999999988888887777655554
No 44
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.31 E-value=4.6 Score=38.45 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=54.3
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
..++|+|+|.|..+...++.|.+.. ..|+|+++. ..+++..+ ..+.+ ..+.++.+.++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g-------a~V~VIsp~-~~~~l~~l-------~~i~~------~~~~~~~~dl~~ 70 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG-------AFVTVVSPE-ICKEMKEL-------PYITW------KQKTFSNDDIKD 70 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEcCc-cCHHHHhc-------cCcEE------EecccChhcCCC
Confidence 4578999999888888777776642 367777643 33444421 12222 245566677788
Q ss_pred ccEEEEeccCCCCCCccchHHHHHHHHHHhhh
Q psy8620 194 AEACFVLAARNYSDKTAADEHTILRSWAVKDF 225 (695)
Q Consensus 194 A~aviIla~~~~~d~~~~D~~~i~~~laik~~ 225 (695)
|+.|+. .+++|..|......+|+.
T Consensus 71 a~lVia--------aT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 71 AHLIYA--------ATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ceEEEE--------CCCCHHHHHHHHHHHHHC
Confidence 887666 346788898888888874
No 45
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=85.22 E-value=0.89 Score=42.26 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=43.4
Q ss_pred CChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 43 ~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
.++.+++|+++.++.. +-++..|.+..+|++++++.++++++.....+.++..+...+
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4588899998888866 447889999999999999999999999999999988776543
No 46
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.52 E-value=1.5 Score=51.48 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=56.8
Q ss_pred eEEec--ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchh
Q psy8620 500 EFYLF--SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDK 577 (695)
Q Consensus 500 v~~~~--~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d 577 (695)
|+|=. +++.|++||+.+|+.+|+..++ |..++.+++.+++.+|++++++-..++.|.+.+...++|.
T Consensus 446 v~~GDat~~~~L~~agi~~A~~vvv~~~d-----------~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~ 514 (621)
T PRK03562 446 VFYGDATRMDLLESAGAAKAEVLINAIDD-----------PQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEK 514 (621)
T ss_pred EEEEeCCCHHHHHhcCCCcCCEEEEEeCC-----------HHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCE
Confidence 55544 7777999999999999999877 7888999999999999999999999998888777666654
No 47
>KOG4440|consensus
Probab=81.14 E-value=2.4 Score=47.84 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c------------CCCCCChhhhhhheeeeeeccCcCCcccCCccc
Q psy8620 6 LHRAMQKSQSALSQQLMILSATFVCGIQHFQR--A------------GHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPS 71 (695)
Q Consensus 6 ~~~~~~r~~~~l~~~l~il~~~l~~g~~~~~~--~------------~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~g 71 (695)
+.-+||-.+++|+.++++-..+..+.++.+.+ | ..+..++..|.||+--.+-.-|-|+-+|.+.-.
T Consensus 561 l~SFlQPfqstLW~lv~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSA 640 (993)
T KOG4440|consen 561 LDSFLQPFQSTLWLLVGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSA 640 (993)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhH
Confidence 34567888888777666433332222222211 1 124678999999976666667888889999999
Q ss_pred chhHHHhHHHHHHhhccchHHHHHHHH
Q psy8620 72 QLYMVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 72 ri~~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
|++.+++.-+++++++.....++..+.
T Consensus 641 RvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 641 RVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred HHHHHHHhhhheeeehhhhhhhhhhee
Confidence 999999998888998888888887654
No 48
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.05 E-value=20 Score=34.32 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=50.8
Q ss_pred EEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 118 VVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 118 vVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
|+|.| .|..+..+++.|.+.. .+|+.+...+.. ... ..++.++.||..+.+.+.++ +..+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-------~~V~~~~R~~~~--~~~-------~~~~~~~~~d~~d~~~~~~a-l~~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-------HEVTALVRSPSK--AED-------SPGVEIIQGDLFDPDSVKAA-LKGADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-------SEEEEEESSGGG--HHH-------CTTEEEEESCTTCHHHHHHH-HTTSSE
T ss_pred eEEECCCChHHHHHHHHHHHCC-------CEEEEEecCchh--ccc-------ccccccceeeehhhhhhhhh-hhhcch
Confidence 57788 5778999999988742 477777654421 211 35899999999999888876 558999
Q ss_pred EEEeccC
Q psy8620 197 CFVLAAR 203 (695)
Q Consensus 197 viIla~~ 203 (695)
||.+...
T Consensus 64 vi~~~~~ 70 (183)
T PF13460_consen 64 VIHAAGP 70 (183)
T ss_dssp EEECCHS
T ss_pred hhhhhhh
Confidence 8887753
No 49
>KOG1052|consensus
Probab=74.65 E-value=3.5 Score=48.77 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=47.1
Q ss_pred CChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 43 ~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
++...++|+++.++..-| ++..|.+..+|++..++.++++++..+..+.+++.+...+
T Consensus 380 ~~~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~ 437 (656)
T KOG1052|consen 380 FSLLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPR 437 (656)
T ss_pred eecccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445556788888777777 5588999999999999999999999998889988776543
No 50
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.95 E-value=30 Score=34.51 Aligned_cols=85 Identities=12% Similarity=0.032 Sum_probs=53.1
Q ss_pred CceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 115 ~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
.++++|+|.|..+..-+..|.+.. ..|+|+++.. .++++.+.+ ..++.++.|+.. .++|. .|
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g-------a~VtVvsp~~-~~~l~~l~~----~~~i~~~~~~~~-~~dl~-----~~ 70 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG-------AQLRVIAEEL-ESELTLLAE----QGGITWLARCFD-ADILE-----GA 70 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-------CEEEEEcCCC-CHHHHHHHH----cCCEEEEeCCCC-HHHhC-----Cc
Confidence 458899999888877777676642 3678887643 345554433 347899999876 56653 45
Q ss_pred cEEEEeccCCCCCCccchHHHHHHHHHHhhh
Q psy8620 195 EACFVLAARNYSDKTAADEHTILRSWAVKDF 225 (695)
Q Consensus 195 ~aviIla~~~~~d~~~~D~~~i~~~laik~~ 225 (695)
..||+ + +++..-|-.+.-.++..
T Consensus 71 ~lVi~-a-------t~d~~ln~~i~~~a~~~ 93 (205)
T TIGR01470 71 FLVIA-A-------TDDEELNRRVAHAARAR 93 (205)
T ss_pred EEEEE-C-------CCCHHHHHHHHHHHHHc
Confidence 55444 2 23334566666666654
No 51
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.58 E-value=16 Score=36.31 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
..++++|+|.|..+...+..|.+.. ..|+++++. ..+++..+.. ...+.+.. ..++.+.+..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g-------a~V~VIs~~-~~~~l~~l~~----~~~i~~~~------~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG-------AHIVVISPE-LTENLVKLVE----EGKIRWKQ------KEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEcCC-CCHHHHHHHh----CCCEEEEe------cCCChhhcCC
Confidence 4568899999888888877777642 367777753 3344554432 12344432 2344455667
Q ss_pred ccEEEEeccCCCCCCccchHHHHHHHHHHhh
Q psy8620 194 AEACFVLAARNYSDKTAADEHTILRSWAVKD 224 (695)
Q Consensus 194 A~aviIla~~~~~d~~~~D~~~i~~~laik~ 224 (695)
|+.||.. +++|..|..+.-.++.
T Consensus 71 adlViaa--------T~d~elN~~i~~~a~~ 93 (202)
T PRK06718 71 AFLVIAA--------TNDPRVNEQVKEDLPE 93 (202)
T ss_pred ceEEEEc--------CCCHHHHHHHHHHHHh
Confidence 7766652 4566667666655543
No 52
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=58.16 E-value=50 Score=33.06 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=49.8
Q ss_pred EEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 118 VVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 118 vVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
|+|.| .|..|..+++.|... +.+|.++...+....... ++ ..++.++.||..+++.|.++ ++.+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-------~~~V~~l~R~~~~~~~~~-l~----~~g~~vv~~d~~~~~~l~~a-l~g~d~ 67 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-------GFSVRALVRDPSSDRAQQ-LQ----ALGAEVVEADYDDPESLVAA-LKGVDA 67 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-------TGCEEEEESSSHHHHHHH-HH----HTTTEEEES-TT-HHHHHHH-HTTCSE
T ss_pred CEEECCccHHHHHHHHHHHhC-------CCCcEEEEeccchhhhhh-hh----cccceEeecccCCHHHHHHH-HcCCce
Confidence 56677 467799999888872 246777765553333332 22 34778899999999999777 789999
Q ss_pred EEEeccC
Q psy8620 197 CFVLAAR 203 (695)
Q Consensus 197 viIla~~ 203 (695)
||++...
T Consensus 68 v~~~~~~ 74 (233)
T PF05368_consen 68 VFSVTPP 74 (233)
T ss_dssp EEEESSC
T ss_pred EEeecCc
Confidence 9887763
No 53
>KOG1054|consensus
Probab=56.94 E-value=6.3 Score=44.42 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=48.5
Q ss_pred CCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHH
Q psy8620 42 HLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 42 ~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
..+.++++||++-.+.-=| -||.|.+.-||+..-++-++.+++++.....++..+.
T Consensus 593 eFgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 593 EFGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred cchhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 3568999999998887777 5999999999999988888899999988888887654
No 54
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.53 E-value=2.8e+02 Score=29.94 Aligned_cols=98 Identities=10% Similarity=0.131 Sum_probs=66.5
Q ss_pred ceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhH-hhcccccc
Q psy8620 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDL-ARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL-~ra~i~~A 194 (695)
+.|+|+|.|+.++..++.+...+ +.....+|+....+- + .-..+...+.+..=||++...| +.++-+-.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~---~~~~f~~vv~~~qe~---~----~~~~~~e~~~fh~fdaTs~~rl~~~~n~~~~ 71 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHY---SNHNFYIVVVKNQES---L----IPKNYPETFAFHCFDATSSFRLLQVLNDEVS 71 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHh---cCceEEEEEeechhh---c----ccccCcceEEEEEeCCccHHHHHHHhhhHhh
Confidence 35788888888888777665433 223456677655331 1 1112356788999999998876 55777777
Q ss_pred cEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEE
Q psy8620 195 EACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQY 232 (695)
Q Consensus 195 ~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Ii 232 (695)
+|+++ ..+-.+|..+.-.+|..+|+..+.
T Consensus 72 ~Afi~---------~qd~~et~~i~k~lr~~f~n~e~e 100 (471)
T COG3400 72 DAFII---------IQDFKETRIIHKILRTHFKNMEVE 100 (471)
T ss_pred hhhee---------hhhHHHHHHHHHHHHHhccCcEEE
Confidence 88776 345567888888999999987753
No 55
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.71 E-value=55 Score=34.63 Aligned_cols=71 Identities=14% Similarity=0.031 Sum_probs=47.5
Q ss_pred eEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.|+|.| .|..|..+++.|.+.. ..|+++..... . ... +. ..++.++.||.+++++|.++ ++.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-------~~V~~l~R~~~-~-~~~-l~----~~~v~~v~~Dl~d~~~l~~a-l~g~d 66 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-------YQVRCLVRNLR-K-ASF-LK----EWGAELVYGDLSLPETLPPS-FKGVT 66 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-------CeEEEEEcChH-H-hhh-Hh----hcCCEEEECCCCCHHHHHHH-HCCCC
Confidence 477777 5677999988887632 35666653321 1 111 11 23789999999999999776 56788
Q ss_pred EEEEecc
Q psy8620 196 ACFVLAA 202 (695)
Q Consensus 196 aviIla~ 202 (695)
+||-++.
T Consensus 67 ~Vi~~~~ 73 (317)
T CHL00194 67 AIIDAST 73 (317)
T ss_pred EEEECCC
Confidence 8887654
No 56
>PLN02214 cinnamoyl-CoA reductase
Probab=51.00 E-value=91 Score=33.45 Aligned_cols=79 Identities=20% Similarity=0.126 Sum_probs=49.4
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCc--cH-HHHHHhcCCccccceEEEEcCCCChHhHhhcc
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL--DT-TMRMILQVPIWAQRVIYIQGSCLKDGDLARAR 190 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~--~~-~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~ 190 (695)
.++|+|.|. |..+..+++.|.+.. ..|+.+..... .. .+..+ . ....++.++.||.++.+++.++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~~~Dl~d~~~~~~~- 78 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-------YTVKGTVRNPDDPKNTHLREL-E--GGKERLILCKADLQDYEALKAA- 78 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-------CEEEEEeCCchhhhHHHHHHh-h--CCCCcEEEEecCcCChHHHHHH-
Confidence 356888885 567888988887632 35665543221 11 11111 1 1123588899999999888775
Q ss_pred cccccEEEEeccCC
Q psy8620 191 MNEAEACFVLAARN 204 (695)
Q Consensus 191 i~~A~aviIla~~~ 204 (695)
++.+++||-++...
T Consensus 79 ~~~~d~Vih~A~~~ 92 (342)
T PLN02214 79 IDGCDGVFHTASPV 92 (342)
T ss_pred HhcCCEEEEecCCC
Confidence 45688888887643
No 57
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=47.66 E-value=27 Score=41.61 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCCChhhhhhheeeeeeccCcCC--------ccc-CCcccchhHHHhHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGD--------FVP-DIWPSQLYMVIMICVA 82 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGD--------i~P-~t~~gri~~i~~i~~g 82 (695)
...++++.++=++--+.|||..- ++| -++.||++.+++|+.|
T Consensus 734 ~~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 734 PNFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred ccccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 45688998888888888988632 233 4778999988887755
No 58
>PLN03223 Polycystin cation channel protein; Provisional
Probab=46.48 E-value=62 Score=40.69 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCCCChhhhhhheeeeeeccCcCC-----ccc----CCcc
Q psy8620 4 NDLHRAMQKSQSALSQQLMILSATF----VCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGD-----FVP----DIWP 70 (695)
Q Consensus 4 ~~~~~~~~r~~~~l~~~l~il~~~l----~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGD-----i~P----~t~~ 70 (695)
.-+.++|++....+..+++++++++ ++|.+.|-....++-++..+++-.+..+ .|-.| ..+ ..++
T Consensus 1317 ~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL~TLFqML--LGDfdYF~eDLk~l~e~nrVL 1394 (1634)
T PLN03223 1317 GVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSINSLFENL--LGDITYFNEDLKNLTGLQFVV 1394 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHHHHHHHHH--HcCchHHHHHHHhhhcccchH
Confidence 3455566666666666655544433 3454554332345667777777544443 23222 111 2355
Q ss_pred cchhH-HHhHHHHHHhhccchHHHHHHHHHH
Q psy8620 71 SQLYM-VIMICVALIVLPTQFEQLAFTWMER 100 (695)
Q Consensus 71 gri~~-i~~i~~gi~~~~~~i~~l~~~~~~~ 100 (695)
|-++. .+++++.++++-.+++.|.+.+.+-
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66664 4444555666677777777776654
No 59
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=45.37 E-value=82 Score=32.95 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=48.3
Q ss_pred EEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccEEE
Q psy8620 119 VVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACF 198 (695)
Q Consensus 119 VI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~avi 198 (695)
|.-|.|..+..+++.|.+... ...|.+++..+.....+...+ .....++.||.++.++|++| ++.++.||
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~-----~~~Vr~~d~~~~~~~~~~~~~----~~~~~~~~~Di~d~~~l~~a-~~g~d~V~ 71 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY-----IYEVRVLDRSPPPKFLKDLQK----SGVKEYIQGDITDPESLEEA-LEGVDVVF 71 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC-----ceEEEEcccccccccchhhhc----ccceeEEEeccccHHHHHHH-hcCCceEE
Confidence 344566779999998887421 135555554332222221111 12334999999999999997 78899999
Q ss_pred EeccCC
Q psy8620 199 VLAARN 204 (695)
Q Consensus 199 Ila~~~ 204 (695)
-++...
T Consensus 72 H~Aa~~ 77 (280)
T PF01073_consen 72 HTAAPV 77 (280)
T ss_pred EeCccc
Confidence 887643
No 60
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=44.39 E-value=2.1e+02 Score=31.19 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=65.7
Q ss_pred cCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCC--C---ccHHHHHHhcCCccccceEEEEcCCCChHhHh
Q psy8620 113 QSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPM--E---LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLA 187 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~--e---~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ 187 (695)
+....++|+|.| .+-.+ +|....|....+..|=++|. | ..+.++.+-++..+..|+.++.-|+. +-|+
T Consensus 288 ~~a~~vLvlGGG-DGLAl----RellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf--~wlr 360 (508)
T COG4262 288 RGARSVLVLGGG-DGLAL----RELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF--QWLR 360 (508)
T ss_pred cccceEEEEcCC-chHHH----HHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH--HHHH
Confidence 446788999874 45433 33322343322233333331 0 11334555566677889999999986 4566
Q ss_pred hcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCcc
Q psy8620 188 RARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPE 239 (695)
Q Consensus 188 ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~ 239 (695)
.++ +.-+.+||=-.+.......-=...=+-.+.-++++++-..++|.-++-
T Consensus 361 ~a~-~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 361 TAA-DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred hhc-ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 664 477877773332211111111123344566677888888888877664
No 61
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=40.25 E-value=70 Score=36.75 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=36.1
Q ss_pred CChhhhhhheeeeeeccCc--CCcccCCcccchhHHHhHHHHHHh
Q psy8620 43 LNLFQATYYVVVTFSTVGY--GDFVPDIWPSQLYMVIMICVALIV 85 (695)
Q Consensus 43 ~~~~da~Yf~vvT~sTVGY--GDi~P~t~~gri~~i~~i~~gi~~ 85 (695)
..+.+.+|=.+-.+.|+|. |.+.+.|+.+++..++.|++|=+.
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~G 494 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFL 494 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999988888899995 568899999999999988876443
No 62
>KOG1053|consensus
Probab=39.74 E-value=70 Score=38.34 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=42.9
Q ss_pred CCChhhhhhh--eeeeeeccCcCCcc----cCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHH
Q psy8620 42 HLNLFQATYY--VVVTFSTVGYGDFV----PDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQK 102 (695)
Q Consensus 42 ~~~~~da~Yf--~vvT~sTVGYGDi~----P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~ 102 (695)
..++..|+|. +++ ||..+ |+.+.+|+++.++.++++++++.....++..++++..
T Consensus 607 ~FtigkaiwllwaLv------FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~ 667 (1258)
T KOG1053|consen 607 SFTIGKAIWLLWALV------FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEY 667 (1258)
T ss_pred ceehhhHHHHHHHHH------hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5678888884 443 34443 5778899999999999999999999999988766543
No 63
>KOG1430|consensus
Probab=39.27 E-value=83 Score=34.27 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=51.4
Q ss_pred CceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 115 EKHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 115 ~~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
+.+++|.| .|.-++.++..|.+.. ...+|-+++..+....++..... ....++.++.||-.+...+.+| ...
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~-----~~~~irv~D~~~~~~~~~~e~~~-~~~~~v~~~~~D~~~~~~i~~a-~~~ 76 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENE-----LKLEIRVVDKTPTQSNLPAELTG-FRSGRVTVILGDLLDANSISNA-FQG 76 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcc-----cccEEEEeccCccccccchhhhc-ccCCceeEEecchhhhhhhhhh-ccC
Confidence 46888877 5567899988888742 13466666644321112211110 0256899999999999999888 455
Q ss_pred ccEEEEeccC
Q psy8620 194 AEACFVLAAR 203 (695)
Q Consensus 194 A~aviIla~~ 203 (695)
| .|+.++..
T Consensus 77 ~-~Vvh~aa~ 85 (361)
T KOG1430|consen 77 A-VVVHCAAS 85 (361)
T ss_pred c-eEEEeccc
Confidence 5 66776653
No 64
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=39.25 E-value=44 Score=36.86 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCChhhhhhheeeeeeccCc--CC-cccCCcccchhHHHhHHHH
Q psy8620 42 HLNLFQATYYVVVTFSTVGY--GD-FVPDIWPSQLYMVIMICVA 82 (695)
Q Consensus 42 ~~~~~da~Yf~vvT~sTVGY--GD-i~P~t~~gri~~i~~i~~g 82 (695)
+.++.++++-++-+++|||. |. ....++.+|++.++.|++|
T Consensus 346 ~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 346 GYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 57899999999999999997 42 3346788999998888765
No 65
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=38.25 E-value=55 Score=37.40 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=34.5
Q ss_pred ChhhhhhheeeeeeccCc--CCcccCCccc------chhHHHhHHHH-HHhhccchHHH
Q psy8620 44 NLFQATYYVVVTFSTVGY--GDFVPDIWPS------QLYMVIMICVA-LIVLPTQFEQL 93 (695)
Q Consensus 44 ~~~da~Yf~vvT~sTVGY--GDi~P~t~~g------ri~~i~~i~~g-i~~~~~~i~~l 93 (695)
+++++++=++-++.|||- |-..+.+..+ |++.++.|+.| +.++|..+...
T Consensus 424 ~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv~~~ 482 (499)
T COG0168 424 PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLVLFT 482 (499)
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHHhhh
Confidence 799999999999999997 4444334444 88877766655 45555555433
No 66
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=38.12 E-value=2e+02 Score=30.13 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=48.6
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCC-CccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPM-ELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~-e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
+.|+|.|. |..|..+++.|.+.. ..|+++... +.......+...+....++.++.||.++++.++++ ++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~ 76 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-------YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDG 76 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-------CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcC
Confidence 46888884 567889988887632 255544322 11111222211111124788999999998887765 456
Q ss_pred ccEEEEeccC
Q psy8620 194 AEACFVLAAR 203 (695)
Q Consensus 194 A~aviIla~~ 203 (695)
++.||-++..
T Consensus 77 ~d~Vih~A~~ 86 (322)
T PLN02662 77 CEGVFHTASP 86 (322)
T ss_pred CCEEEEeCCc
Confidence 7888888764
No 67
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=37.26 E-value=1.6e+02 Score=29.44 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=48.9
Q ss_pred CceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 115 ~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
.+-|+|+|.|..+..=++.|.+. +-.|+|+++.. .++++...+ ..++..+. +..+.+++.. |
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~-------ga~v~Vvs~~~-~~el~~~~~----~~~i~~~~-~~~~~~~~~~-----~ 73 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKA-------GADVTVVSPEF-EPELKALIE----EGKIKWIE-REFDAEDLDD-----A 73 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-------CCEEEEEcCCc-cHHHHHHHH----hcCcchhh-cccChhhhcC-----c
Confidence 44667777766554333333322 23677777665 456666554 23466666 6666777665 5
Q ss_pred cEEEEeccCCCCCCccchHHHHHHHHHHhhhC
Q psy8620 195 EACFVLAARNYSDKTAADEHTILRSWAVKDFA 226 (695)
Q Consensus 195 ~aviIla~~~~~d~~~~D~~~i~~~laik~~~ 226 (695)
.-||+- +++...|-.+..+++...
T Consensus 74 ~lviaA--------t~d~~ln~~i~~~a~~~~ 97 (210)
T COG1648 74 FLVIAA--------TDDEELNERIAKAARERR 97 (210)
T ss_pred eEEEEe--------CCCHHHHHHHHHHHHHhC
Confidence 555542 334455667777777754
No 68
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=35.70 E-value=48 Score=31.70 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=48.2
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecc-cccccccccccchh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQ-SSNMRFMQFRAQDK 577 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~-~~n~~f~~~~~~~d 577 (695)
..+.|.+||+..|..++++... +..++.++..++..+|.++++.=..+ ..+.+-+...+.++
T Consensus 74 ~~~~l~~a~~~~a~~vi~~~~~-----------~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~ 136 (212)
T COG1226 74 REEVLEAAGIERARAVIVTLSD-----------DATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADE 136 (212)
T ss_pred CHHHHHhcChhheeEEEEecCC-----------HHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCe
Confidence 6777999999999999999877 67788888888999999997766666 56655555455543
No 69
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=35.17 E-value=3.5e+02 Score=27.35 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=49.6
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
...+|+|+|.|..+..=+.-|.++. ..|.|++|.- .+++..+.+ ..++.++..+. .++||+ .
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g-------A~VtVVap~i-~~el~~l~~----~~~i~~~~r~~-~~~dl~-----g 85 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG-------CYVYILSKKF-SKEFLDLKK----YGNLKLIKGNY-DKEFIK-----D 85 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEcCCC-CHHHHHHHh----CCCEEEEeCCC-ChHHhC-----C
Confidence 4569999999876654444444432 3788887653 345555443 34677777655 567774 4
Q ss_pred ccEEEEeccCCCCCCccchHHHHHHHHHHhhh
Q psy8620 194 AEACFVLAARNYSDKTAADEHTILRSWAVKDF 225 (695)
Q Consensus 194 A~aviIla~~~~~d~~~~D~~~i~~~laik~~ 225 (695)
|.-||+ + +++..-|-.+.-.++..
T Consensus 86 ~~LVia-A-------TdD~~vN~~I~~~a~~~ 109 (223)
T PRK05562 86 KHLIVI-A-------TDDEKLNNKIRKHCDRL 109 (223)
T ss_pred CcEEEE-C-------CCCHHHHHHHHHHHHHc
Confidence 544444 2 23444455555555543
No 70
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=34.74 E-value=23 Score=34.63 Aligned_cols=48 Identities=8% Similarity=0.075 Sum_probs=36.6
Q ss_pred CCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhh
Q psy8620 39 GHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVL 86 (695)
Q Consensus 39 ~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~ 86 (695)
+.+.-+|.|.+||+++.-+|-+-.|+.+.|..-|-.++.=-++++++-
T Consensus 127 ~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fn 174 (180)
T PF07077_consen 127 GDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFN 174 (180)
T ss_pred CCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 345567999999999888888889999988887877766555554443
No 71
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=34.14 E-value=2.9e+02 Score=28.97 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=48.9
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecC-CCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSP-MELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~-~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
+.|+|.| .|..+..++..|.+.. ..|+++.. .+..+.+..+........++.++.||.++++.++++ ++.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~ 77 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-------YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA-IEG 77 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-------CEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH-HhC
Confidence 4688887 4566888888887632 25554432 221122332221111124688999999999888776 345
Q ss_pred ccEEEEeccC
Q psy8620 194 AEACFVLAAR 203 (695)
Q Consensus 194 A~aviIla~~ 203 (695)
++.||-++..
T Consensus 78 ~d~vih~A~~ 87 (322)
T PLN02986 78 CDAVFHTASP 87 (322)
T ss_pred CCEEEEeCCC
Confidence 7888888764
No 72
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=34.04 E-value=1e+02 Score=33.70 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=47.4
Q ss_pred EEEEccCccHHHHHHHHHHHhcCCCCCcc-eEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 118 VVVCSTTLHADTIMDFLNEFYAHPLLQNY-YVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 118 vVI~G~~~~~~~l~~~L~e~~~~~~~~~~-~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
|+|+|.|..+..+++.|.+.. +. .|++.+... +..+.+.+. ....++.++.-|..+.+.|+++ ++.++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~------~~~~v~va~r~~--~~~~~~~~~-~~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG------PFEEVTVADRNP--EKAERLAEK-LLGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT------CE-EEEEEESSH--HHHHHHHT---TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCC------CCCcEEEEECCH--HHHHHHHhh-ccccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 678888899999998888642 12 566665433 233333221 1256899999999999999888 788887
Q ss_pred EEEecc
Q psy8620 197 CFVLAA 202 (695)
Q Consensus 197 viIla~ 202 (695)
||-++.
T Consensus 71 Vin~~g 76 (386)
T PF03435_consen 71 VINCAG 76 (386)
T ss_dssp EEE-SS
T ss_pred EEECCc
Confidence 776554
No 73
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=33.99 E-value=1.2e+02 Score=33.85 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCCCChhhhhhheeeee-eccCcCCcc-cCCcccchhHHHh
Q psy8620 5 DLHRAMQKSQSALSQQLMILSATF----VCGIQHFQRAGHRHLNLFQATYYVVVTF-STVGYGDFV-PDIWPSQLYMVIM 78 (695)
Q Consensus 5 ~~~~~~~r~~~~l~~~l~il~~~l----~~g~~~~~~~~~~~~~~~da~Yf~vvT~-sTVGYGDi~-P~t~~gri~~i~~ 78 (695)
-+.+++++....+....++++.++ .+|...+-....+..++..++.-.+.++ ...+|+|+. +....|.++.+.+
T Consensus 323 ~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~l~g~~~~~~~~~~~~~lg~l~~~~~ 402 (425)
T PF08016_consen 323 LLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRMLLGDFDYDELYQANPVLGPLFFFSF 402 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHHhcCCCchhhhhcccccHHHHHHHHH
Confidence 345677777776666655443332 2233333222234556666665433322 234455543 3345566654444
Q ss_pred HH
Q psy8620 79 IC 80 (695)
Q Consensus 79 i~ 80 (695)
++
T Consensus 403 ~~ 404 (425)
T PF08016_consen 403 MF 404 (425)
T ss_pred HH
Confidence 33
No 74
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=33.16 E-value=3e+02 Score=28.89 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=47.9
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCC-ccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPME-LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
.+.++|.|. +..+..++..|.+.. ..|+++...+ ........+.......++.++.||.++.++++++ ++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~ 76 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG-------YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-ID 76 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-------CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-Hc
Confidence 357888884 456888888887632 2454443221 1111222211110124688999999999888765 45
Q ss_pred cccEEEEeccC
Q psy8620 193 EAEACFVLAAR 203 (695)
Q Consensus 193 ~A~aviIla~~ 203 (695)
..+.+|-++..
T Consensus 77 ~~d~vih~A~~ 87 (325)
T PLN02989 77 GCETVFHTASP 87 (325)
T ss_pred CCCEEEEeCCC
Confidence 67888887753
No 75
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=32.57 E-value=63 Score=35.59 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=30.7
Q ss_pred CChhhhhhheeeeeeccCcCCccc------CCcccchhHHHhHHHHHHhhccch
Q psy8620 43 LNLFQATYYVVVTFSTVGYGDFVP------DIWPSQLYMVIMICVALIVLPTQF 90 (695)
Q Consensus 43 ~~~~da~Yf~vvT~sTVGYGDi~P------~t~~gri~~i~~i~~gi~~~~~~i 90 (695)
.+++||++.++.+++|-||.-... .++...+++++++++|-.-|+...
T Consensus 127 ~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~~ 180 (390)
T TIGR00933 127 MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVHY 180 (390)
T ss_pred hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHHH
Confidence 789999999999999999832211 122245555555555555454443
No 76
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=32.28 E-value=26 Score=37.99 Aligned_cols=38 Identities=29% Similarity=0.574 Sum_probs=24.6
Q ss_pred hhhhhhheeeeeeccCc--CCccc-CCcc---cchhHHHhHHHH
Q psy8620 45 LFQATYYVVVTFSTVGY--GDFVP-DIWP---SQLYMVIMICVA 82 (695)
Q Consensus 45 ~~da~Yf~vvT~sTVGY--GDi~P-~t~~---gri~~i~~i~~g 82 (695)
+.++++-++-.++|||. |...| .+.. +|++.++.|++|
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 69999999999999986 44233 3444 899877776655
No 77
>PLN02650 dihydroflavonol-4-reductase
Probab=32.07 E-value=1.5e+02 Score=31.82 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCC-ccHHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 114 SEKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPME-LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 114 ~~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
.++.|+|.|. |..+..+++.|.+.. ..|+++...+ ....+......+....++.++.||..+.+.++++ +
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~ 75 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-------YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-I 75 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-------CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-H
Confidence 3457888884 566888888887632 3565543222 1122222222121123688999999998887765 4
Q ss_pred ccccEEEEeccC
Q psy8620 192 NEAEACFVLAAR 203 (695)
Q Consensus 192 ~~A~aviIla~~ 203 (695)
+.++.||-++..
T Consensus 76 ~~~d~ViH~A~~ 87 (351)
T PLN02650 76 RGCTGVFHVATP 87 (351)
T ss_pred hCCCEEEEeCCC
Confidence 567888888754
No 78
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=29.94 E-value=3.6e+02 Score=27.79 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=46.2
Q ss_pred EEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCc---cHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 118 VVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL---DTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 118 vVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~---~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
|+|.|. |..+..+++.|.+... ...|++++.... .+.+..+.. ..++.++.||..+++++.++ ++.
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~-~~~ 71 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHP-----DAEVIVLDKLTYAGNLENLADLED----NPRYRFVKGDIGDRELVSRL-FTE 71 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCC-----CCEEEEecCCCcchhhhhhhhhcc----CCCcEEEEcCCcCHHHHHHH-Hhh
Confidence 677774 5678899888866321 135666653211 111221111 23678899999999988776 333
Q ss_pred --ccEEEEeccC
Q psy8620 194 --AEACFVLAAR 203 (695)
Q Consensus 194 --A~aviIla~~ 203 (695)
++.||-++..
T Consensus 72 ~~~d~vi~~a~~ 83 (317)
T TIGR01181 72 HQPDAVVHFAAE 83 (317)
T ss_pred cCCCEEEEcccc
Confidence 7888877753
No 79
>KOG3676|consensus
Probab=29.66 E-value=1.2e+02 Score=35.92 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=33.9
Q ss_pred CChhhhhhheeeeee--ccCcCCccc--CC---cccchh-HHHhHHHHHHhhccchHHHHHH
Q psy8620 43 LNLFQATYYVVVTFS--TVGYGDFVP--DI---WPSQLY-MVIMICVALIVLPTQFEQLAFT 96 (695)
Q Consensus 43 ~~~~da~Yf~vvT~s--TVGYGDi~P--~t---~~gri~-~i~~i~~gi~~~~~~i~~l~~~ 96 (695)
.+..|+|...+.|+. |+||||..- .+ +.++++ ++++|++.+.++=.+|+.+++.
T Consensus 585 ~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~T 646 (782)
T KOG3676|consen 585 CNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNT 646 (782)
T ss_pred CChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 457788887777774 999999753 34 445554 4445555555555555555544
No 80
>PLN02583 cinnamoyl-CoA reductase
Probab=29.55 E-value=4.5e+02 Score=27.35 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=45.8
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcC-CccccceEEEEcCCCChHhHhhcccc
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQV-PIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~-p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
++.|+|.|. |..+..++..|.+.. ..|+++............+.. +....++.++.||.++.+.+..+ +.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G-------~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~-l~ 77 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRG-------YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA-LK 77 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-------CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH-Hc
Confidence 467888885 456889988887632 356555432111111111111 10124688999999999888765 44
Q ss_pred cccEEEEe
Q psy8620 193 EAEACFVL 200 (695)
Q Consensus 193 ~A~aviIl 200 (695)
.+++++-+
T Consensus 78 ~~d~v~~~ 85 (297)
T PLN02583 78 GCSGLFCC 85 (297)
T ss_pred CCCEEEEe
Confidence 56676643
No 81
>PRK06914 short chain dehydrogenase; Provisional
Probab=29.17 E-value=3e+02 Score=28.03 Aligned_cols=80 Identities=10% Similarity=-0.065 Sum_probs=45.5
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc-HHHHHHhcCCccccceEEEEcCCCChHhHhhc----
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD-TTMRMILQVPIWAQRVIYIQGSCLKDGDLARA---- 189 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~-~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra---- 189 (695)
++++|+|. +..+..++..|.+.. ..|+++...+.. +.+...+.......++.++.+|.+++++++++
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKG-------YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-------CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 57888885 456888888887532 356666533211 11211111111134788999999999887651
Q ss_pred -ccccccEEEEecc
Q psy8620 190 -RMNEAEACFVLAA 202 (695)
Q Consensus 190 -~i~~A~aviIla~ 202 (695)
.....+.++..+.
T Consensus 77 ~~~~~id~vv~~ag 90 (280)
T PRK06914 77 KEIGRIDLLVNNAG 90 (280)
T ss_pred HhcCCeeEEEECCc
Confidence 1124466665543
No 82
>PRK10750 potassium transporter; Provisional
Probab=28.62 E-value=79 Score=35.95 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=18.8
Q ss_pred CCChhhhhhheeeeeeccCc
Q psy8620 42 HLNLFQATYYVVVTFSTVGY 61 (695)
Q Consensus 42 ~~~~~da~Yf~vvT~sTVGY 61 (695)
+++++||+..++.|++|=||
T Consensus 204 Gm~~fdAi~ha~saisTgGF 223 (483)
T PRK10750 204 GMDAFDAIGHSFSTIAIGGF 223 (483)
T ss_pred CCcHHHHHHHHHHHHhccCc
Confidence 58899999999999999998
No 83
>PLN02427 UDP-apiose/xylose synthase
Probab=28.47 E-value=2e+02 Score=31.29 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=50.6
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcC--CccccceEEEEcCCCChHhHhhcccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQV--PIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~--p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..|+|.| .|..|..+++.|.+.. ...|+.++... .....+... +.+..++.++.||..+.+.++++ +.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~------g~~V~~l~r~~--~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~-~~ 85 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET------PHKVLALDVYN--DKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL-IK 85 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC------CCEEEEEecCc--hhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-hh
Confidence 3588887 4677999988887631 12566665332 122222111 11334799999999999988876 45
Q ss_pred cccEEEEeccC
Q psy8620 193 EAEACFVLAAR 203 (695)
Q Consensus 193 ~A~aviIla~~ 203 (695)
.++.||=++..
T Consensus 86 ~~d~ViHlAa~ 96 (386)
T PLN02427 86 MADLTINLAAI 96 (386)
T ss_pred cCCEEEEcccc
Confidence 68888877753
No 84
>PF13289 SIR2_2: SIR2-like domain
Probab=27.56 E-value=1.1e+02 Score=27.63 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=23.9
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPME 155 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e 155 (695)
..+++|++|++..-..+...|++...........+.++.+.+
T Consensus 85 ~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~ 126 (143)
T PF13289_consen 85 RSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDP 126 (143)
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCC
Confidence 456899999987766666666655433222223444444333
No 85
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=26.23 E-value=1.6e+02 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8620 2 FQNDLHRAMQKSQSALSQQLMILSATFVCGIQHF 35 (695)
Q Consensus 2 ~~~~~~~~~~r~~~~l~~~l~il~~~l~~g~~~~ 35 (695)
+..+.++.++|.+.+++..++++++++++-+.-+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~ 37 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPF 37 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888988888888887766654443333
No 86
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=26.08 E-value=2.6e+02 Score=29.92 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=49.4
Q ss_pred CCceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCC-ccHHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 114 SEKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPME-LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 114 ~~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
....|+|.|. |..+..++++|.+.. ..|+++.... ....+...+. ...++.++.||..+.+.++++ +
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG-------YTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-------CEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHH-H
Confidence 3456888884 567888988887631 3566654332 1111111111 124688999999999888776 4
Q ss_pred ccccEEEEeccC
Q psy8620 192 NEAEACFVLAAR 203 (695)
Q Consensus 192 ~~A~aviIla~~ 203 (695)
+..+.||-++..
T Consensus 78 ~~~d~Vih~A~~ 89 (353)
T PLN02896 78 KGCDGVFHVAAS 89 (353)
T ss_pred cCCCEEEECCcc
Confidence 567888887764
No 87
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=25.83 E-value=2e+02 Score=28.34 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=47.1
Q ss_pred EEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc--c
Q psy8620 118 VVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE--A 194 (695)
Q Consensus 118 vVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~--A 194 (695)
|+|+| .|..|..+++.|.+.. ..|+.+...+........ ..++.++.+|..+.+.++++ ++. .
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-------~~v~~~~~~~~~~~~~~~------~~~~~~~~~dl~~~~~~~~~-~~~~~~ 66 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-------HEVIVLSRSSNSESFEEK------KLNVEFVIGDLTDKEQLEKL-LEKANI 66 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-------TEEEEEESCSTGGHHHHH------HTTEEEEESETTSHHHHHHH-HHHHTE
T ss_pred EEEEccCCHHHHHHHHHHHHcC-------Cccccccccccccccccc------cceEEEEEeecccccccccc-ccccCc
Confidence 56777 4556889988888742 245555544433322211 12889999999998888776 333 4
Q ss_pred cEEEEeccC
Q psy8620 195 EACFVLAAR 203 (695)
Q Consensus 195 ~aviIla~~ 203 (695)
+.||-++..
T Consensus 67 d~vi~~a~~ 75 (236)
T PF01370_consen 67 DVVIHLAAF 75 (236)
T ss_dssp SEEEEEBSS
T ss_pred eEEEEeecc
Confidence 888888764
No 88
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=25.76 E-value=1e+02 Score=29.48 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=26.8
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHH
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMI 163 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~ 163 (695)
..++++||||+..++.+...|+.+. ..|.|.+ .+|-..+++.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~G-------a~V~V~e-~DPi~alqA~ 63 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLG-------ARVTVTE-IDPIRALQAA 63 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT--------EEEEE--SSHHHHHHHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCC-------CEEEEEE-CChHHHHHhh
Confidence 3468999999999999999999874 2444443 4444444443
No 89
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=25.10 E-value=1.4e+02 Score=27.62 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=37.8
Q ss_pred ceEEEEccC-ccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHH---hcCCccccceEEEEcCCCChHhHhhc
Q psy8620 116 KHVVVCSTT-LHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMI---LQVPIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 116 ~HvVI~G~~-~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~---l~~p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
++++|.|.+ ..+..+++.|.+.. ...|+++...+..+....+ ++.+ ..++.++..|.+++++++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g------~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~ 70 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRG------ARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRAL 70 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT------TEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC------ceEEEEeeeccccccccccccccccc--cccccccccccccccccccc
Confidence 478888853 34778877776531 1255555544111222222 2212 46788888888888776553
No 90
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.17 E-value=2e+02 Score=28.80 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=43.1
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccH--HHHHHhcCCccccceEEEEcCCCChHhHhhcc--
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDT--TMRMILQVPIWAQRVIYIQGSCLKDGDLARAR-- 190 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~--~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~-- 190 (695)
+.++|.|. +..+..++..|.+. +..|+++...+.+. .....++. ...++.++.+|.++++.+.++-
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~-------g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 73 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAA-------GFDLAINDRPDDEELAATQQELRA--LGVEVIFFPADVADLSAHEAMLDA 73 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-------CCEEEEEecCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHH
Confidence 45777774 34578888888763 23677765332211 11111111 1346888999999988765531
Q ss_pred ----cccccEEEEec
Q psy8620 191 ----MNEAEACFVLA 201 (695)
Q Consensus 191 ----i~~A~aviIla 201 (695)
....+.+|-.+
T Consensus 74 ~~~~~~~id~vi~~a 88 (256)
T PRK12745 74 AQAAWGRIDCLVNNA 88 (256)
T ss_pred HHHhcCCCCEEEECC
Confidence 12456655543
No 91
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=23.83 E-value=1.7e+02 Score=28.21 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=38.9
Q ss_pred eEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCC-Ccc----HHHHHHhcCCccccceEEEEcCCCChHhHhhc
Q psy8620 117 HVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPM-ELD----TTMRMILQVPIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 117 HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~-e~~----~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
-++|.| .+..+..+.+.|.+.+ ..++|++... .+. ..++.+.+ ...++.++..|.+++++++++
T Consensus 2 tylitGG~gglg~~la~~La~~~------~~~~il~~r~~~~~~~~~~~i~~l~~---~g~~v~~~~~Dv~d~~~v~~~ 71 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG------ARRLILLGRSGAPSAEAEAAIRELES---AGARVEYVQCDVTDPEAVAAA 71 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------SEEEEEESSGGGSTTHHHHHHHHHH---TT-EEEEEE--TTSHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC------CCEEEEeccCCCccHHHHHHHHHHHh---CCCceeeeccCccCHHHHHHH
Confidence 356666 5556788888888753 2378888765 111 22332222 256899999999999988776
No 92
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=23.43 E-value=1.2e+02 Score=34.70 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccC-------CcccchhHHHhHHHHHHhhccchHHHH
Q psy8620 25 SATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPD-------IWPSQLYMVIMICVALIVLPTQFEQLA 94 (695)
Q Consensus 25 ~~~l~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~-------t~~gri~~i~~i~~gi~~~~~~i~~l~ 94 (695)
+.++.+.+..+. .+++++||++-++.+++|-||. ..+. ++.=.++++++|++|-+-||.....+.
T Consensus 183 ~~t~l~~~~~~~----~gm~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~~~~~ 254 (499)
T COG0168 183 LLTILLALAFIL----AGMPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGIGFPVHYRLLI 254 (499)
T ss_pred HHHHHHHHHHHh----ccCCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcCChHHHHHHHH
Confidence 333444444443 2578999999999999999984 3332 233345566666666666766666554
No 93
>PRK10750 potassium transporter; Provisional
Probab=23.14 E-value=1.2e+02 Score=34.55 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCChhhhhhheeeeeeccCc--CCc----ccCCcccchhHHHhHHHH
Q psy8620 42 HLNLFQATYYVVVTFSTVGY--GDF----VPDIWPSQLYMVIMICVA 82 (695)
Q Consensus 42 ~~~~~da~Yf~vvT~sTVGY--GDi----~P~t~~gri~~i~~i~~g 82 (695)
+.++.+|+--++-++++||. |.. ...++.+|++.++.|++|
T Consensus 419 g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG 465 (483)
T PRK10750 419 GVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG 465 (483)
T ss_pred CCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence 46799999888888888886 433 345788999988877765
No 94
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=20.76 E-value=4.2e+02 Score=30.86 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=14.2
Q ss_pred cCCceEEEEccCccHHHH
Q psy8620 113 QSEKHVVVCSTTLHADTI 130 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l 130 (695)
....|++|+|....|++.
T Consensus 174 ~e~~h~li~G~tGsGKs~ 191 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSV 191 (566)
T ss_pred ccccceEEEcCCCCCHHH
Confidence 356799999988888764
No 95
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=20.55 E-value=3.7e+02 Score=31.34 Aligned_cols=81 Identities=9% Similarity=0.020 Sum_probs=47.6
Q ss_pred CCceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc-HHHHHHhcC-C------ccccceEEEEcCCCChH
Q psy8620 114 SEKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD-TTMRMILQV-P------IWAQRVIYIQGSCLKDG 184 (695)
Q Consensus 114 ~~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~-~~l~~~l~~-p------~~~~~v~~i~Gd~~~~~ 184 (695)
..+.++|.|. |..|..+++.|.+.. ..|+++...+.. ..+...++. . ....++.++.||..+.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G-------~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG-------FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-------CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 3456778774 567888888887632 356665433211 111111110 0 00135889999999999
Q ss_pred hHhhcccccccEEEEecc
Q psy8620 185 DLARARMNEAEACFVLAA 202 (695)
Q Consensus 185 dL~ra~i~~A~aviIla~ 202 (695)
+++++ +..++.||..+.
T Consensus 152 sI~~a-LggiDiVVn~AG 168 (576)
T PLN03209 152 QIGPA-LGNASVVICCIG 168 (576)
T ss_pred HHHHH-hcCCCEEEEccc
Confidence 88764 567887776543
Done!