Query psy8620
Match_columns 695
No_of_seqs 381 out of 1981
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:29:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3naf_A Calcium-activated potas 100.0 1.3E-80 4.3E-85 712.8 44.5 547 76-687 16-706 (798)
2 3mt5_A Potassium large conduct 100.0 6.6E-80 2.3E-84 699.5 37.4 511 114-687 2-682 (726)
3 4hpf_A Potassium channel subfa 100.0 1.3E-77 4.5E-82 704.7 31.1 513 114-687 2-658 (722)
4 4gx0_A TRKA domain protein; me 100.0 2.3E-40 8E-45 379.4 26.4 469 41-693 48-533 (565)
5 1lnq_A MTHK channels, potassiu 100.0 6.1E-35 2.1E-39 313.0 12.0 285 28-398 31-321 (336)
6 2aef_A Calcium-gated potassium 99.7 1.1E-16 3.7E-21 162.0 18.6 203 113-398 7-215 (234)
7 3mt5_A Potassium large conduct 99.7 1.8E-16 6.1E-21 180.6 15.0 255 113-398 375-713 (726)
8 3naf_A Calcium-activated potas 99.7 2.5E-16 8.4E-21 181.4 15.4 254 113-399 399-738 (798)
9 4g65_A TRK system potassium up 99.6 6E-15 2E-19 163.8 16.9 328 116-576 4-348 (461)
10 4h33_A LMO2059 protein; bilaye 99.6 4.8E-16 1.7E-20 143.6 2.0 96 2-99 3-98 (137)
11 4gx0_A TRKA domain protein; me 99.5 2.3E-14 7.8E-19 163.8 12.9 190 116-399 349-546 (565)
12 3l4b_C TRKA K+ channel protien 99.5 3.6E-14 1.2E-18 141.9 12.7 196 117-399 2-203 (218)
13 4hpf_A Potassium channel subfa 99.5 6.2E-14 2.1E-18 164.4 14.9 254 113-398 383-687 (722)
14 2k1e_A Water soluble analogue 99.5 4.9E-14 1.7E-18 123.6 7.8 63 40-102 36-98 (103)
15 3ouf_A Potassium channel prote 99.5 3.3E-14 1.1E-18 123.1 6.4 77 23-101 13-89 (97)
16 2q67_A Potassium channel prote 99.5 3.4E-14 1.1E-18 126.9 6.1 72 24-97 31-102 (114)
17 2ih3_C Voltage-gated potassium 99.4 9.4E-14 3.2E-18 125.6 7.5 63 40-102 57-119 (122)
18 3fwz_A Inner membrane protein 99.4 8.4E-13 2.9E-17 122.5 14.1 135 112-268 4-140 (140)
19 3vou_A ION transport 2 domain 99.4 1.8E-13 6.3E-18 128.2 8.2 70 24-95 34-103 (148)
20 3ldc_A Calcium-gated potassium 99.4 6.3E-14 2.2E-18 117.4 4.4 57 41-97 25-81 (82)
21 1id1_A Putative potassium chan 99.4 5.8E-12 2E-16 118.5 15.8 145 114-278 2-151 (153)
22 3eff_K Voltage-gated potassium 99.4 1.7E-13 5.9E-18 127.0 5.0 62 40-101 36-97 (139)
23 1p7b_A Integral membrane chann 99.4 2.6E-13 8.9E-18 142.9 6.7 115 2-124 47-168 (333)
24 2a9h_A Voltage-gated potassium 99.4 2.9E-13 9.8E-18 127.3 5.8 62 40-101 80-141 (155)
25 2qks_A KIR3.1-prokaryotic KIR 99.3 4.7E-13 1.6E-17 140.5 5.8 117 2-124 29-153 (321)
26 1xl4_A Inward rectifier potass 99.3 1.7E-13 5.9E-18 142.7 1.9 78 40-125 78-155 (301)
27 1orq_C Potassium channel; volt 99.2 8.9E-12 3E-16 124.9 8.7 60 41-100 162-221 (223)
28 2r9r_B Paddle chimera voltage 99.2 8.8E-12 3E-16 139.9 9.1 86 41-128 372-457 (514)
29 3l9w_A Glutathione-regulated p 99.2 4.1E-11 1.4E-15 130.9 11.6 131 114-266 3-135 (413)
30 3llv_A Exopolyphosphatase-rela 99.2 3.8E-10 1.3E-14 104.2 14.1 133 115-270 6-140 (141)
31 3pjs_K KCSA, voltage-gated pot 99.1 2.4E-12 8.2E-17 122.9 -2.1 58 41-98 64-121 (166)
32 3um7_A Potassium channel subfa 99.1 2.6E-11 8.8E-16 125.9 4.4 58 41-98 221-284 (309)
33 3ukm_A Potassium channel subfa 99.1 5.8E-11 2E-15 121.4 6.6 62 42-103 199-267 (280)
34 4g65_A TRK system potassium up 99.1 5.5E-10 1.9E-14 123.8 14.1 199 114-397 234-439 (461)
35 3beh_A MLL3241 protein; transm 99.0 2.8E-10 9.5E-15 122.2 8.4 59 43-101 160-218 (355)
36 3sya_A G protein-activated inw 99.0 2.6E-10 8.8E-15 119.8 6.5 117 2-123 29-167 (340)
37 3um7_A Potassium channel subfa 99.0 1.6E-10 5.4E-15 119.9 3.5 60 41-100 112-171 (309)
38 3ukm_A Potassium channel subfa 98.9 3.2E-10 1.1E-14 115.9 3.3 62 40-101 89-150 (280)
39 3spc_A Inward-rectifier K+ cha 98.9 4.7E-10 1.6E-14 117.9 3.3 117 2-123 31-170 (343)
40 3c85_A Putative glutathione-re 98.8 2.9E-08 1E-12 95.8 12.6 131 114-266 38-172 (183)
41 1lss_A TRK system potassium up 98.6 3.9E-07 1.3E-11 83.1 14.1 133 116-270 5-139 (140)
42 2hmt_A YUAA protein; RCK, KTN, 98.5 2.3E-07 8E-12 85.0 9.2 133 116-271 7-142 (144)
43 2g1u_A Hypothetical protein TM 98.5 9E-07 3.1E-11 82.9 12.5 132 113-266 17-150 (155)
44 1lnq_A MTHK channels, potassiu 98.3 3.5E-06 1.2E-10 89.4 11.8 143 505-693 166-309 (336)
45 3rvy_A ION transport protein; 98.1 1.3E-06 4.4E-11 90.6 3.4 98 4-101 135-243 (285)
46 2aef_A Calcium-gated potassium 98.1 1.7E-05 5.9E-10 79.3 11.4 142 505-692 60-202 (234)
47 3l4b_C TRKA K+ channel protien 96.9 0.00065 2.2E-08 66.9 4.7 136 505-693 54-190 (218)
48 4dxw_A Navrh, ION transport pr 94.7 0.053 1.8E-06 53.6 7.1 95 4-98 120-224 (229)
49 1vct_A Hypothetical protein PH 93.4 0.066 2.3E-06 52.1 4.9 57 337-399 121-181 (205)
50 1id1_A Putative potassium chan 93.2 0.096 3.3E-06 48.0 5.5 60 505-575 60-119 (153)
51 3fwz_A Inner membrane protein 92.5 0.14 4.9E-06 46.1 5.4 61 505-576 60-120 (140)
52 3kg2_A Glutamate receptor 2; I 90.9 0.18 6.1E-06 59.3 5.3 57 44-101 563-619 (823)
53 3l9w_A Glutathione-regulated p 90.7 0.14 4.8E-06 55.4 3.8 62 505-577 57-118 (413)
54 3llv_A Exopolyphosphatase-rela 84.3 1.4 4.7E-05 39.3 5.8 59 505-575 59-117 (141)
55 3jxo_A TRKA-N domain protein; 81.4 1.4 4.6E-05 35.9 4.1 55 335-398 12-70 (86)
56 1kyq_A Met8P, siroheme biosynt 71.6 8 0.00027 39.0 7.4 109 114-241 12-146 (274)
57 3ic5_A Putative saccharopine d 71.1 16 0.00055 30.5 8.4 73 115-201 5-77 (118)
58 3dfz_A SIRC, precorrin-2 dehyd 67.8 14 0.00049 35.9 8.1 99 113-241 29-127 (223)
59 3c85_A Putative glutathione-re 65.6 3.7 0.00013 38.2 3.3 55 505-570 93-148 (183)
60 2wm3_A NMRA-like family domain 60.0 22 0.00076 35.4 8.2 76 115-202 5-81 (299)
61 1qyd_A Pinoresinol-lariciresin 57.9 38 0.0013 33.8 9.6 76 116-203 5-86 (313)
62 2r6j_A Eugenol synthase 1; phe 57.6 26 0.0009 35.2 8.4 76 114-202 10-88 (318)
63 3ius_A Uncharacterized conserv 54.8 60 0.002 31.8 10.4 69 115-203 5-73 (286)
64 1lss_A TRK system potassium up 54.0 20 0.00069 30.9 5.9 52 505-568 58-109 (140)
65 3dqp_A Oxidoreductase YLBE; al 53.5 62 0.0021 30.3 9.9 71 117-204 2-74 (219)
66 1pjq_A CYSG, siroheme synthase 52.8 63 0.0021 34.8 10.8 85 115-225 12-96 (457)
67 3gpi_A NAD-dependent epimerase 52.1 20 0.00067 35.5 6.2 69 116-202 4-72 (286)
68 3dhn_A NAD-dependent epimerase 51.6 47 0.0016 31.2 8.7 71 116-202 5-76 (227)
69 2hmt_A YUAA protein; RCK, KTN, 51.3 8.4 0.00029 33.6 2.9 54 505-570 59-113 (144)
70 2g1u_A Hypothetical protein TM 50.0 27 0.00094 31.2 6.3 56 505-571 73-128 (155)
71 3c1o_A Eugenol synthase; pheny 48.0 43 0.0015 33.6 8.1 77 116-202 5-86 (321)
72 2gas_A Isoflavone reductase; N 47.4 48 0.0016 32.9 8.3 76 117-202 4-85 (307)
73 3i6i_A Putative leucoanthocyan 47.2 31 0.001 35.3 6.9 77 116-202 11-92 (346)
74 3ruf_A WBGU; rossmann fold, UD 45.6 45 0.0015 33.9 7.9 81 115-203 25-110 (351)
75 1xgk_A Nitrogen metabolite rep 44.4 54 0.0019 33.7 8.3 75 116-202 6-82 (352)
76 3r6d_A NAD-dependent epimerase 44.3 38 0.0013 31.9 6.6 75 116-202 6-82 (221)
77 1hdo_A Biliverdin IX beta redu 43.0 55 0.0019 30.0 7.4 73 116-203 4-77 (206)
78 1qyc_A Phenylcoumaran benzylic 42.4 44 0.0015 33.1 7.1 75 116-202 5-86 (308)
79 3m2p_A UDP-N-acetylglucosamine 42.2 1.1E+02 0.0036 30.4 10.0 70 116-204 3-73 (311)
80 4egb_A DTDP-glucose 4,6-dehydr 42.0 39 0.0013 34.3 6.7 82 116-203 25-108 (346)
81 3ew7_A LMO0794 protein; Q8Y8U8 42.0 99 0.0034 28.6 9.2 69 117-203 2-71 (221)
82 4id9_A Short-chain dehydrogena 40.4 65 0.0022 32.6 8.1 69 114-203 18-87 (347)
83 3slg_A PBGP3 protein; structur 38.6 33 0.0011 35.3 5.6 75 116-203 25-101 (372)
84 3e48_A Putative nucleoside-dip 38.3 77 0.0026 31.1 8.1 72 117-202 2-74 (289)
85 2yy7_A L-threonine dehydrogena 36.2 55 0.0019 32.4 6.6 72 116-202 3-77 (312)
86 3qvo_A NMRA family protein; st 36.1 1.7E+02 0.0059 27.6 10.0 74 115-202 23-97 (236)
87 2gn4_A FLAA1 protein, UDP-GLCN 34.7 93 0.0032 31.7 8.2 77 116-203 22-101 (344)
88 3h2s_A Putative NADH-flavin re 32.3 1.4E+02 0.0047 27.7 8.5 70 117-203 2-72 (224)
89 3uf0_A Short-chain dehydrogena 32.3 2.9E+02 0.01 26.8 11.3 77 115-201 31-114 (273)
90 2c29_D Dihydroflavonol 4-reduc 32.0 56 0.0019 33.0 5.9 80 116-203 6-87 (337)
91 2jl1_A Triphenylmethane reduct 31.8 58 0.002 31.9 5.8 73 117-202 2-75 (287)
92 2v6g_A Progesterone 5-beta-red 30.6 47 0.0016 33.9 5.1 77 116-203 2-82 (364)
93 1orr_A CDP-tyvelose-2-epimeras 30.2 90 0.0031 31.3 7.1 75 117-203 3-83 (347)
94 3abi_A Putative uncharacterize 30.0 77 0.0026 32.8 6.7 69 117-202 18-86 (365)
95 3sxp_A ADP-L-glycero-D-mannohe 29.8 71 0.0024 32.6 6.3 83 115-202 10-99 (362)
96 2zcu_A Uncharacterized oxidore 29.7 86 0.0029 30.5 6.7 71 118-202 2-74 (286)
97 1xq6_A Unknown protein; struct 29.1 92 0.0031 29.5 6.7 73 116-202 5-78 (253)
98 2bka_A CC3, TAT-interacting pr 27.6 69 0.0024 30.4 5.4 74 116-202 19-93 (242)
99 1oc2_A DTDP-glucose 4,6-dehydr 27.4 80 0.0027 31.9 6.2 77 116-203 5-85 (348)
100 2p4h_X Vestitone reductase; NA 26.3 58 0.002 32.5 4.8 79 116-202 2-83 (322)
101 1rpn_A GDP-mannose 4,6-dehydra 26.0 1.4E+02 0.0048 29.8 7.7 79 114-203 13-96 (335)
102 2x4g_A Nucleoside-diphosphate- 25.8 1.6E+02 0.0056 29.3 8.2 72 117-203 15-87 (342)
103 2pk3_A GDP-6-deoxy-D-LYXO-4-he 25.7 1.7E+02 0.006 28.8 8.3 73 113-203 10-84 (321)
104 2rh8_A Anthocyanidin reductase 25.7 73 0.0025 32.1 5.4 77 115-203 9-90 (338)
105 3i4f_A 3-oxoacyl-[acyl-carrier 23.8 1.2E+02 0.0041 29.3 6.4 65 116-189 8-75 (264)
106 3eod_A Protein HNR; response r 23.5 3E+02 0.01 22.4 8.5 38 215-252 66-107 (130)
107 3e8x_A Putative NAD-dependent 23.3 1.6E+02 0.0054 27.7 7.1 72 115-203 21-94 (236)
108 3ehe_A UDP-glucose 4-epimerase 23.3 76 0.0026 31.5 5.0 70 117-203 3-73 (313)
109 2c5a_A GDP-mannose-3', 5'-epim 23.2 77 0.0026 32.7 5.1 73 116-203 30-103 (379)
110 1sb8_A WBPP; epimerase, 4-epim 22.9 1.6E+02 0.0055 29.7 7.5 80 116-203 28-112 (352)
111 1ek6_A UDP-galactose 4-epimera 22.9 1.1E+02 0.0036 30.9 6.1 78 116-202 3-90 (348)
112 3on5_A BH1974 protein; structu 22.5 2E+02 0.0069 29.9 8.0 87 114-220 198-284 (362)
113 3rft_A Uronate dehydrogenase; 22.3 91 0.0031 30.3 5.2 70 116-203 4-74 (267)
114 3hyw_A Sulfide-quinone reducta 22.2 74 0.0025 33.7 4.8 36 115-155 2-37 (430)
115 1y1p_A ARII, aldehyde reductas 21.7 2.3E+02 0.008 28.0 8.4 81 115-204 11-94 (342)
116 2we8_A Xanthine dehydrogenase; 21.5 1.7E+02 0.0057 30.8 7.2 87 114-220 203-293 (386)
117 2z1m_A GDP-D-mannose dehydrata 21.3 1.5E+02 0.0051 29.5 6.8 77 116-203 4-85 (345)
118 3ged_A Short-chain dehydrogena 21.0 2E+02 0.0068 28.0 7.3 62 115-188 2-64 (247)
119 3oig_A Enoyl-[acyl-carrier-pro 20.8 1.8E+02 0.0063 27.9 7.1 67 115-189 7-77 (266)
120 3pjz_A Potassium uptake protei 20.5 65 0.0022 35.2 3.9 40 43-82 422-467 (494)
121 1r6d_A TDP-glucose-4,6-dehydra 20.4 1.6E+02 0.0055 29.3 6.8 80 117-203 2-86 (337)
122 3f6c_A Positive transcription 20.2 2.1E+02 0.0072 23.5 6.6 37 216-252 62-102 (134)
123 3ko8_A NAD-dependent epimerase 20.2 1.9E+02 0.0065 28.4 7.3 70 117-203 2-72 (312)
No 1
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-80 Score=712.83 Aligned_cols=547 Identities=24% Similarity=0.347 Sum_probs=408.5
Q ss_pred HHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEccCccHHHHHHHHHHHhcCCCC-CcceEEEecCC
Q psy8620 76 VIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLL-QNYYVVLLSPM 154 (695)
Q Consensus 76 i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~-~~~~VVil~~~ 154 (695)
+..|++|+++|++.++.+++.+.+++++.|+|.. .+.++|||||||. ....+..+|+|++++..+ .+.+|||+++.
T Consensus 16 ~~~IlgGI~lFa~~ig~liel~~~r~~~~G~y~~--~~~k~HIIIcG~~-~~~~v~~fL~El~~~~~~~~~~~IVIL~~~ 92 (798)
T 3naf_A 16 LEEILSKLYHIENELARIKKLLGERKKYGGSYSA--VSGRKHIVVCGHI-TLESVSNFLKDFLHKDRDDVNVEIVFLHNI 92 (798)
T ss_dssp --------------------------CCCSSCCC--CCSSEEEEEESCC-CHHHHHHHHHHHTCTTSCCCCEEEEEEESS
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHhhCCcccc--ccCCCeEEEEcCC-CHHHHHHHHHHHHhhcccccCCcEEEEeCC
Confidence 5678889999999999999999998888788753 4589999999984 688999999999865433 46799999988
Q ss_pred CccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEE
Q psy8620 155 ELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQ 234 (695)
Q Consensus 155 e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~ 234 (695)
+++.+++.+++. +..++.|++|||+++++|+||++++|++|||++++...++..+|++|++++|++|+++|+++|+|+
T Consensus 93 ~p~~eLe~lL~~--~~~~V~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP~i~IIa~ 170 (798)
T 3naf_A 93 SPNLELEALFKR--HFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQ 170 (798)
T ss_dssp CCCHHHHHHHHH--TTTTEEEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCcHHHHHHhhc--ccCceEEEEcCCCCHHHHHhcCHhhCCEEEEECCccccCCccchHHHHHHHHHHHHHCCCCCEEEE
Confidence 887777766642 457999999999999999999999999999999987778888999999999999999999999999
Q ss_pred EeCccchhhc--------cCCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCcee
Q psy8620 235 IFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIY 306 (695)
Q Consensus 235 i~~~~~~~~~--------~gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy 306 (695)
+.+++|+.++ +|||+|||++++++++||++|.+||+++++.+|++.... . ....+.|+++|.+|
T Consensus 171 ~~~~en~~~L~~~~sw~~AGAd~VI~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~-~-~~~~~~Wi~eY~~g------ 242 (798)
T 3naf_A 171 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF-I-KIEEDTWQKYYLEG------ 242 (798)
T ss_dssp ESCTTGGGSGGGCTTCCTTTTCEEEEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCC-C-CCCSCSHHHHHHHH------
T ss_pred ECCHhHHHHHHhcccchhcCCCEEEehHHHHHHHHHHHhcCCCHHHHHHHHhccccc-c-ccchhHHHHHHhcc------
Confidence 9999998654 489999999999999999999999999999999987321 1 12346777777666
Q ss_pred eeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec---------ce
Q psy8620 307 HILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK---------DD 377 (695)
Q Consensus 307 ~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig---------~~ 377 (695)
.|+|+|.+.+++ .+.|+||.|++..+++++|++++| |+
T Consensus 243 ----------------------------~g~Eiy~v~l~s-----~~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~ 289 (798)
T 3naf_A 243 ----------------------------VSNEMYTEYLSS-----AFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESR 289 (798)
T ss_dssp ----------------------------HTBCCEEEECCG-----GGTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEE
T ss_pred ----------------------------cCcEEEEEeCCc-----ccCCCCHHHHHHHHHHhCCEEEEEEEeccCCCCCe
Confidence 778888887754 689999999998999999999886 26
Q ss_pred EEEecccceecccCCCeeeecccccc-------------cCCCC---cccCCCCCCCC----CCCCcccC-------CCC
Q psy8620 378 MWIRTYGRLYQKLCSTTCEIPIGIYR-------------TQDMS---SIESPQPRESN----PRPSAHKA-------DAP 430 (695)
Q Consensus 378 i~lNP~~~~i~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~----~~p~i~~~-------~~~ 430 (695)
+++||++++++. ++|.+++ ++.+. |.|+. .++.|.+.... ..|..... ++.
T Consensus 290 iilNP~~d~~L~-~GD~Liv-Ia~~~~~vk~a~~yc~~ch~~~~~~e~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (798)
T 3naf_A 290 ILINPGNHLKIQ-EGTLGFF-IASDAKEVKRAFFYCKACHXXXXXXXXXXXXXXXXSPKLMRHDPLLIPGNDQIDNMDSN 367 (798)
T ss_dssp EEESCCTTCBCC-TTCEEEE-CCBTTTGGGGGGSCSSCCCCCGGGGGGSCCSCCCCCCCCCCCC----------------
T ss_pred EEECCCCCCEEC-CCCEEEE-EeCCHHHHHHHHHHHHhccccccccccccccccccCccccccCcccccccccccchhhh
Confidence 999999999998 5888754 44321 22221 12223222110 01111101 122
Q ss_pred Ccccccccccccccccc-hhhhhhh---cccccccce-------------eecceeeeccccccccccCCceehhh----
Q psy8620 431 PSKLTRLAFYSVEFYLF-SLDDLLR---AGILLAENV-------------VVVNKELSNSAEEDTLADCNTIVAVQ---- 489 (695)
Q Consensus 431 ~~~~~i~G~~~~~~~i~-~l~~ll~---~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~iv~~~---- 489 (695)
..+.+.+|+++|++-.. +-+.+.+ +...|.+|+ ++.++.+|+++++.+.++++|||+++
T Consensus 368 ~~~~d~~g~fhw~~~~~~~~~~l~~~~~~~~~~~nHivvC~~~~~~~~~~gl~~fv~PLRa~~~~~~~l~~IVil~~~~~ 447 (798)
T 3naf_A 368 VKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEY 447 (798)
T ss_dssp -CCBCTTSCSBCCCCCCGGGTBCCHHHHHHSCCCSCEEEEEECCSSSCCCCTHHHHHHHHCSSSCSTTCCCEEEEBCHHH
T ss_pred hhhhccccceeecCCCchhHhhcchhhhhhhccCCCEEEEEecCCCcchhhhHHhhhhhhcccCCccccCCEEEECCCCc
Confidence 34677889888887664 3222322 234566774 35667889999999999999999993
Q ss_pred ---HHhhhccCCceEEec----ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHH------------
Q psy8620 490 ---KLTSLAFYSVEFYLF----SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFK------------ 550 (695)
Q Consensus 490 ---~~~~~~~fp~v~~~~----~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~------------ 550 (695)
.|+.+++||+|||+. +.+||+||||+.|++||||+++... .+++.++|+++||++.+++.
T Consensus 448 ~~~~w~~i~~Fp~Vy~v~Gspl~~~dL~~anI~~a~~~VIls~~~~~-~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~ 526 (798)
T 3naf_A 448 LKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNN-IDDTSLQDKECILASLNIKSMQFDDSIGVLQA 526 (798)
T ss_dssp HHHHHTTTTTSSSEEBCBSCTTCHHHHHHTTSTTCSEEEEEESSCTT-CCCSSSTTHHHHHHHHHHHHCCCC--------
T ss_pred CHHHHHHhhCCCceEEecCCCCCHHHHHHhCHHhCCEEEEEcCCCCC-CCChhhhhHHHHHhhhhhhhhccccccccccc
Confidence 788999999999998 9999999999999999999987533 47899999999998866543
Q ss_pred ------------------------------hcCCCcEEEeecccccccccccccchhHHHhhhhhhHHhhhcCCcccccc
Q psy8620 551 ------------------------------FFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMF 600 (695)
Q Consensus 551 ------------------------------~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 600 (695)
.+++++|||||.+++|++|+++...+ ...++|+|
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiitEL~~~~ni~fl~~~~~~----------------~~~~~~~~ 590 (798)
T 3naf_A 527 NSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDDDD----------------DPDTELYL 590 (798)
T ss_dssp ------------------------------CTTCCCEEEEESSTTGGGGGSCCTTC----------------CTTCCGGG
T ss_pred cccccccccccccccccccccchhhccccccCCCCceEEEecCCCccccccccCCC----------------ccCcceee
Confidence 25689999999999999999983322 24578999
Q ss_pred cccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCC--------CCc----c-------------eeeeee---
Q psy8620 601 RLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAP--------GSG----F-------------LTSMKI--- 652 (695)
Q Consensus 601 ~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~--------~~~----~-------------l~~~~i--- 652 (695)
++|||+|+|||++|||+||+|+|||+++++++|+|++++.++ +.| + +...++
T Consensus 591 ~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~il~~lvtGg~~~~~e~~~~~~~~~~~~~~~~~~~~~r~~c~l~~l~L~~~ 670 (798)
T 3naf_A 591 TQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDG 670 (798)
T ss_dssp SHHHHHTSEEETTHHHHHHHHHHHCTHHHHHHHHHHSCSCHHHHHHHTTTSSSCCCCCCCTTGGGTTCCCEEEEEESTTS
T ss_pred cccccccceeHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcHHHHHHhhhccccccCcCccccccccccceecccccccc
Confidence 999999999999999999999999999999999999764332 111 1 112221
Q ss_pred CC-CccCCCcHHHHHHHHHhccCceeeEEEeecCCC
Q psy8620 653 TK-DDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMS 687 (695)
Q Consensus 653 ~~-~~~~~~tf~~lf~~ll~~~~~i~iGlyR~~~~~ 687 (695)
|. ....++||||||+++|+++|+|||||||..+..
T Consensus 671 p~~~~~~~~tfg~lf~~~l~~~~~l~iGLYR~~~~~ 706 (798)
T 3naf_A 671 PFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAH 706 (798)
T ss_dssp STTTTTTTCCHHHHHTHHHHTTCCEECEEEEESTTS
T ss_pred CcccccccCcHHHHHHHHHHhCCcceeeeeeccccc
Confidence 11 225789999999999999999999999999986
No 2
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=100.00 E-value=6.6e-80 Score=699.46 Aligned_cols=511 Identities=24% Similarity=0.347 Sum_probs=393.9
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCC-CCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHP-LLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~-~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
+++||||||| .+..++..||+|++++. ...+.+|||+++.+|+.+++.+++. +..++.|++|||+++++|+||+++
T Consensus 2 gk~HIIVcG~-~~~~sV~~FL~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~--~~~~V~fI~Gdat~~edL~RA~I~ 78 (726)
T 3mt5_A 2 GRKHIVVCGH-ITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKR--HFTQVEFYQGSVLNPHDLARVKIE 78 (726)
T ss_dssp --CEEEEEES-CCHHHHHHHHHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHH--HCSSEEEECCCTTSHHHHHHTTGG
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHhccccccCCcEEEEeCCCCCHHHHHHHHh--hcCceEEEEeCCCCHHHHHhcChh
Confidence 5799999998 68999999999998743 3456799999998888888876652 357999999999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--------cCCCeEEehHHHHHHHHHHH
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--------KFAEFIVCEDELKYALLANN 264 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--------~gad~VI~~~el~~~lLa~s 264 (695)
+|++|||++++...++..+|++|++++|++|+++|+++|+|++.+++|+.++ +|||+|||++++++++||++
T Consensus 79 ~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP~i~IVA~~~~~en~~~L~ri~sw~~AGAd~VI~~~el~g~LLAqs 158 (726)
T 3mt5_A 79 SADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQS 158 (726)
T ss_dssp GCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCTTSCEEEEESCHHHHGGGGGSTTCCTTTTCEEEEHHHHHHHHHHHH
T ss_pred hcCEEEEEcCccccCCcccHHHHHHHHHHHHHhCCCCCEEEEECCHHHHHHHhhccchhhcCCCEEEehHHHHHHHHHHH
Confidence 9999999999887788899999999999999999999999999999998654 58999999999999999999
Q ss_pred hcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEec
Q psy8620 265 CTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILL 344 (695)
Q Consensus 265 ~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l 344 (695)
|.+||+++++.+|++.... . ....+.|+++|.+| .|+|+|.+.+
T Consensus 159 ~l~PGlst~i~~LLs~~s~-~-~~~~~~wi~EY~~g----------------------------------~g~EiY~v~l 202 (726)
T 3mt5_A 159 CLAQGLSTMLANLFSMRSF-I-KIEEDTWQKYYLEG----------------------------------VSNEMYTEYL 202 (726)
T ss_dssp HHSTTHHHHHHTTTSCCCC-C-CCCSSSHHHHHHHH----------------------------------HTCEEEEEEC
T ss_pred hcCCCHHHHHHHHHhcccc-c-ccchhHHHHHHhcc----------------------------------CCceEEEEeC
Confidence 9999999999999986322 1 12346677777655 7788888877
Q ss_pred cCCcccccccCcchhHHHhhhhhhhcceeec---------ceEEEecccceecccCCCeeeecccccc------------
Q psy8620 345 ADSRFFGEYEGKSFTYASFHSHRKYGMKITK---------DDMWIRTYGRLYQKLCSTTCEIPIGIYR------------ 403 (695)
Q Consensus 345 ~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig---------~~i~lNP~~~~i~~~~~~~~~~~~~~~~------------ 403 (695)
++ +++|+||.|++..+++++|++++| |++++||++++++. ++|.+++ ++.++
T Consensus 203 ~s-----~~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~d~~I~-~GD~LiV-Ia~s~~evkra~~yc~~ 275 (726)
T 3mt5_A 203 SS-----AFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQ-EGTLGFF-IASDAKEVKRAFFYCKA 275 (726)
T ss_dssp CG-----GGTTSBHHHHHHHHHHTTCCEEEEEEC------CCCEESCCTTCBCC-TTCEEEE-EESCHHHHHTTTSCCC-
T ss_pred Cc-----ccCCCCHHHHHHHHHhhCCEEEEEEEecccCCCCeEEECCCCCcEEC-CCCEEEE-EECCHHHHhhhheeccc
Confidence 54 699999999998999999999986 35999999999998 5887754 44321
Q ss_pred -cCCCC---cccCCCCCCCC------------------------------CCCCcc------cC-CCCCccccccccccc
Q psy8620 404 -TQDMS---SIESPQPRESN------------------------------PRPSAH------KA-DAPPSKLTRLAFYSV 442 (695)
Q Consensus 404 -~~~~~---~~~~~~~~~~~------------------------------~~p~i~------~~-~~~~~~~~i~G~~~~ 442 (695)
|.|.. .|..|.|+... ..|... .. +++..+.+.+|+++|
T Consensus 276 ch~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tgmfhw 355 (726)
T 3mt5_A 276 CHDDITDPKRIKKCGCKRLEDEQPSTLSPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHW 355 (726)
T ss_dssp --------------------------------------------------------------CTTGGGSCCEETTSCBBC
T ss_pred CCcccCCHHHhhcCCCcccccccccccccccccccccccccCCCCcccccCCcccccCcchhhhhhhhhhhhccccceee
Confidence 22211 12233222110 001000 00 122346678999999
Q ss_pred ccccc-hhhhhhh---cccccccce-------------eecceeeeccccccccccCCceehhh-------HHhhhccCC
Q psy8620 443 EFYLF-SLDDLLR---AGILLAENV-------------VVVNKELSNSAEEDTLADCNTIVAVQ-------KLTSLAFYS 498 (695)
Q Consensus 443 ~~~i~-~l~~ll~---~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~iv~~~-------~~~~~~~fp 498 (695)
++-.. +.|.|-+ +...|.+|+ ++++++|||+|++.+.+|++|||+++ +|+.|++||
T Consensus 356 ~~~~~l~~~~l~~~~~~~~~~~~HivvC~~~~~~s~~~gl~~fvmpLRasn~~~~elk~IV~lg~~~~~~~ew~~l~nfp 435 (726)
T 3mt5_A 356 CAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLHNFP 435 (726)
T ss_dssp CCCCCGGGTBCCHHHHHHSCCCSCEEEEEECCTTSCCCCTHHHHTGGGBTTSCGGGCCCEEEEECHHHHHHHHHHHTTSS
T ss_pred cCCccHHHHhhchhhhhhhcccCcEEEEEecCCCCcchhhhhheeecccccCCHhHcCCEEEECCCccCHHHHHHHhcCC
Confidence 98765 4443333 344577774 46888999999999999999999994 788999999
Q ss_pred ceEEec----ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHh-----------------------
Q psy8620 499 VEFYLF----SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKF----------------------- 551 (695)
Q Consensus 499 ~v~~~~----~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~----------------------- 551 (695)
+|||+. +++||++|||..|++||||+++... .+++.++|.++|+++.+|+.+
T Consensus 436 ~iy~~~Gspl~~~dL~~~~i~~c~~cvils~~~~~-~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~ 514 (726)
T 3mt5_A 436 KVSILPGTPLSRADLRAVNINLCDMCVILSANQNN-IDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDR 514 (726)
T ss_dssp SEEEEESCTTCHHHHHHTTGGGCSEEEEEECC-----------CHHHHHHHHHHHTCEEC--------------------
T ss_pred ceEEecCCcCChHhHHHhCHhhCCEEEEecCCCCC-cCCcccchhhhhhhhhcccccccccccccccccccccccccccc
Confidence 999998 9999999999999999999987533 678999999999999666543
Q ss_pred -------------------cCCCcEEEeecccccccccccccchhHHHhhhhhhHHhhhcCCcccccccccccccccccH
Q psy8620 552 -------------------FPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSA 612 (695)
Q Consensus 552 -------------------~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~fa~G~vfs~ 612 (695)
+++++|||||++++||+|+++...+++ .++++|++|||+|+|||+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~i~iitEL~~~sni~fl~~~~~~~~----------------~~~~~~~~~fa~G~~f~~ 578 (726)
T 3mt5_A 515 SSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDDDDDP----------------DTELYLTQPFACGTAFAV 578 (726)
T ss_dssp ---------------CCEEGGGSCEEEEESCGGGGTTSCSSSCCCT----------------TSCGGGSHHHHTTCEEEG
T ss_pred cccccCccchhhhcccccccCCCceEEEecCCccceeeeeccccCC----------------CcceeecccccccceehH
Confidence 357899999999999999998554433 378999999999999999
Q ss_pred hhHHHHHHhhhcchhHHHHHHHHhcCCCCCC--------C----c-------------ceeeeeeCC---C-ccCCCcHH
Q psy8620 613 SMLDTLLYQAFVKDYVITFIRLLLGVDQAPG--------S----G-------------FLTSMKITK---D-DMWIRTYG 663 (695)
Q Consensus 613 ~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~--------~----~-------------~l~~~~i~~---~-~~~~~tf~ 663 (695)
+|||+||+|+|||+++++++|+|++++.++. . + .+..++++. . ...++|||
T Consensus 579 s~ldsl~~~~~~n~~i~~~~~~litgg~t~~~e~~~~~~~~l~~~~s~~~~l~~r~rc~~~ql~l~~~~~~~~~~~~tfG 658 (726)
T 3mt5_A 579 SVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYG 658 (726)
T ss_dssp GGGGTHHHHHHHCHHHHHHHHHHHTSCC---CHHHHHHHSSCCEECCCHHHHHTTCCCEEEEEETTTSTTTGGGTTCBHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCCCchhHHHHhhhcccccCCcccchhcccccccccccccccccchhhcccCCcHH
Confidence 9999999999999999999999997754421 1 1 111222221 1 13579999
Q ss_pred HHHHHHHhccCceeeEEEeecCCC
Q psy8620 664 RLYQKLCSTTCEIPIGIYRTQDMS 687 (695)
Q Consensus 664 ~lf~~ll~~~~~i~iGlyR~~~~~ 687 (695)
|||+++|+++|++||||||..+.+
T Consensus 659 ~lF~~~l~~~~~lciGlYR~~~~~ 682 (726)
T 3mt5_A 659 DLFCKALKTYNMLCFGIYRLRDAH 682 (726)
T ss_dssp HHHHHHHHHSCCEEEEEEEESCC-
T ss_pred HHHHHHHHhCCeeEEEeeeccCcc
Confidence 999999999999999999999984
No 3
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-77 Score=704.68 Aligned_cols=513 Identities=22% Similarity=0.299 Sum_probs=381.3
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCC-CcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLL-QNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~-~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
+++||||||| ....++..||+|+|+++.. .+.+|||+++.+|+.+++.++ +.|..+|.|++||+++++||+||+++
T Consensus 2 gk~HivvcG~-~~~~~l~~fL~ef~~~~~~~~~~~vVil~~~~p~~el~~~l--~~~~~~v~~i~Gs~~~~~dL~ra~i~ 78 (722)
T 4hpf_A 2 GKKFIVVCGN-ITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPSLELETIF--KCYLAYTTFISGSAMKWEDLRRVAVE 78 (722)
T ss_dssp -CCEEEEESC-CCHHHHHHHHTTC--------CCEEECCBSCC------CCC--CTTTTSEECCBCCSSCHHHHHHHTGG
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHhhhhhhcCCCeEEEEeCCCCCHHHHHHH--hhhCceEEEEEcCCCCHHHHHhcCcc
Confidence 5789999998 5788999999999876433 367999999988888877654 45788999999999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--------cCCCeEEehHHHHHHHHHHH
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--------KFAEFIVCEDELKYALLANN 264 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--------~gad~VI~~~el~~~lLa~s 264 (695)
+|++|||++++...++..+|++||+++|++|+++|+++|+||+.+++|+.++ +|||+|||++++++++||++
T Consensus 79 ~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p~~~iivq~~~~~n~~~~~~~~~~~~~gad~VI~~~el~~~lla~s 158 (722)
T 4hpf_A 79 SAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSWNWDTGDNIICFAELKLGFIAQG 158 (722)
T ss_dssp GSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCTTCCEEEECSSGGGGGHHHHSTTCCTTTTCEEECHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCccCCchhhHHHHHHHHHHHHHhCCCCCEEEEECChhhHHHHHhhhhhhhcCCCeEEeHHHHHHHHHHHH
Confidence 9999999999988888889999999999999999999999999999998765 48999999999999999999
Q ss_pred hcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEec
Q psy8620 265 CTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILL 344 (695)
Q Consensus 265 ~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l 344 (695)
|.|||+++++.+|+++..+. ....+.|+++|++| .|+|||.+.+
T Consensus 159 ~~~PG~stli~~Ll~~~~~~--~~~~~~w~~~Y~~g----------------------------------~~~eiy~~~~ 202 (722)
T 4hpf_A 159 CLVPGLCTFLTSLFVEQNKK--VMPKQTWKKHFLNS----------------------------------MKNKILTQRL 202 (722)
T ss_dssp HHSTTHHHHHHHTTCCCCSC--CCCSSHHHHHHHHH----------------------------------HTCBCCEEEC
T ss_pred hcCCCHHHHHHHHHhccccc--ccchhhHHHHHhcc----------------------------------cCceEEEeeC
Confidence 99999999999999875432 23346788777766 7778888877
Q ss_pred cCCcccccccCcchhHHHhhhhhhhcceeec-----------ceEEEecccceecccCCCeeeecccccc----------
Q psy8620 345 ADSRFFGEYEGKSFTYASFHSHRKYGMKITK-----------DDMWIRTYGRLYQKLCSTTCEIPIGIYR---------- 403 (695)
Q Consensus 345 ~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig-----------~~i~lNP~~~~i~~~~~~~~~~~~~~~~---------- 403 (695)
++ .|+|+||.|++.++++++|++++| +++++||++++++. ++|.|++ +|.+.
T Consensus 203 ~~-----~~~G~tf~e~~~~~~~~~~~iligi~~~~~~~~~~~~i~lNP~~~~~i~-~~D~~~~-Ia~~~~~~~~~~~~~ 275 (722)
T 4hpf_A 203 SD-----DFAGMSFPEVARLCFLKMHLLLIAIEYKSLFTDGFCGLILNPPPQVRIR-KNTLGFF-IAETPKDVRRALFYC 275 (722)
T ss_dssp CG-----GGTTCBHHHHHHHHHHHSCCEEEEEEC-------CCCCEESCCTTCBCC-TTCEEEE-EBSCHHHHHGGGC--
T ss_pred Cc-----ccCCCCHHHHHHHHHhhcCeEEEEeecccccccCCCeEEECCCCCeEEC-CCCEEEE-EECCHHHHhhhhhhh
Confidence 54 699999999999999999999986 35899999999998 5888854 44321
Q ss_pred ---cCCCC---cccCCCCC----CCCCCCCc----------------------ccC-----------------CCCCccc
Q psy8620 404 ---TQDMS---SIESPQPR----ESNPRPSA----------------------HKA-----------------DAPPSKL 434 (695)
Q Consensus 404 ---~~~~~---~~~~~~~~----~~~~~p~i----------------------~~~-----------------~~~~~~~ 434 (695)
+.+.. .+..+.+. .....|+. ... +.+.++.
T Consensus 276 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (722)
T 4hpf_A 276 SVCHDDVFIPELITNCGCKSRSRQHITVPSVKRMKKCLKGISSRISGQDSPPRVSASTSSISNFTTRTLQHDVEQDSDQL 355 (722)
T ss_dssp -----------------------------------------------------------------------------CCB
T ss_pred hhccccccchhHHhhcCCcccccccccCCcccccccccccccccccCcCCccccccccccccCCcccccccccccccccc
Confidence 11110 00000000 00000000 000 0111122
Q ss_pred ccccccccccccc-hhhhhhhc---cccccccee-------------ecceeeeccccccccccCCceehh-------hH
Q psy8620 435 TRLAFYSVEFYLF-SLDDLLRA---GILLAENVV-------------VVNKELSNSAEEDTLADCNTIVAV-------QK 490 (695)
Q Consensus 435 ~i~G~~~~~~~i~-~l~~ll~~---~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~iv~~-------~~ 490 (695)
...|...+..-.. .-+.+.+. ...+.+|+. ..++.+|+++++++.++++|||++ .+
T Consensus 356 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~nhivvc~~~~~~~~~~gL~~fi~PLRa~~~~~~el~pIViL~~~~~~~~~ 435 (722)
T 4hpf_A 356 DSSGMFHWCKPTSLDKVTLKRTGKSKYKFRNHIVACVFGDAHSAPMGLRNFVMPLRASNYTRKELKDIVFIGSLDYLQRE 435 (722)
T ss_dssp CSSSSBBCCCCCCHHHHBCCCCC---CCCCSCEEEEECCCTTSCCCCSHHHHGGGGBTTSCGGGCCCEEEEECHHHHHHH
T ss_pred cccCcccccCCcchhhhhcccchhhhccccCCEEEEeccCcccccccchhheeeccccccccccCCCEEEEeCCCCCHHH
Confidence 3333222221111 11112111 122455533 456778899999999999999999 27
Q ss_pred HhhhccCCceEEec----ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHh-------cCCCcEEE
Q psy8620 491 LTSLAFYSVEFYLF----SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKF-------FPGIRTIT 559 (695)
Q Consensus 491 ~~~~~~fp~v~~~~----~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~-------~~~i~iit 559 (695)
|+.+++||+|||+. +.+||+||||..|++|||++++. .+.+++.++|++||+++++|+++ +|++++||
T Consensus 436 w~~i~~Fp~Vy~~~GSpl~~~DL~ragi~~a~~vVIl~~~~-~~~~~~~~~D~~tI~~~~~I~~l~~~~~~~~~~i~iit 514 (722)
T 4hpf_A 436 WRFLWNFPQIYILPGCALYSGDLHAANIEQCSMCAVLSPPP-QPSSNQTLVDTEAIMATLTIGSLQIDEKSNCRKVPILT 514 (722)
T ss_dssp GGGGTTCSSEEEEESCTTCHHHHHHTTGGGCSEEEEECCCC-CC-----CCSHHHHHHHHHHHSCCC-------CCCEEE
T ss_pred HHHHhcCCCEEEEECCcCCHHHHHhcCcccccEEEEEcCCC-CCcccchhhhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence 89999999999998 99999999999999999999874 34578899999999999999987 68899999
Q ss_pred eecccccccccccccchhHHHhhhhhhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCC
Q psy8620 560 ELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVD 639 (695)
Q Consensus 560 El~~~~n~~f~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~ 639 (695)
||++++||+|+++.+.++ .+..+.+|+|++|||+|+||+.+|||+||||+|||+++++++|+|++++
T Consensus 515 EL~~~sN~~fl~~~~~~~-------------~~~~~~~~~~s~~FAsG~vfs~smldsLl~qsf~n~~i~~ii~~Ll~g~ 581 (722)
T 4hpf_A 515 ELKNPSNIHFIEQLGGLE-------------GSLQETNLHLSTAFSTGTVFSGSFLDSLLATAFYNYHVLELLQMLVTGG 581 (722)
T ss_dssp ECSSGGGHHHHHHHHTCC-------------TTTCCSSGGGSHHHHHTSEECGGGGGTHHHHHHHCHHHHHHHHHHHHSC
T ss_pred EecCcccchhhcccccch-------------hcccCcccccchhhhcccEeHHHHHHHHHHHHHhcHHHHHHHHHHhcCC
Confidence 999999999998544332 2344577899999999999999999999999999999999999999765
Q ss_pred CCCC------------C------------------cceeeeeeCCCccCCCcHHHHHHHHHhccCceeeEEEeecCCC
Q psy8620 640 QAPG------------S------------------GFLTSMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMS 687 (695)
Q Consensus 640 ~~~~------------~------------------~~l~~~~i~~~~~~~~tf~~lf~~ll~~~~~i~iGlyR~~~~~ 687 (695)
.++. . ..|..++++ +.++++|||+||+++|+++|+|||||||..+..
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~~~~-~~~~~~tfg~lF~~ll~~~~~i~IGLyR~~~~~ 658 (722)
T 4hpf_A 582 VSSQLEQHLDKDKVYGVADSCTSLLSGRNRCKLGLLSLHETILS-DVNPRNTFGQLFCGSLDLFGILCVGLYRIIDEE 658 (722)
T ss_dssp CC------------------------CSCCCEEEEECSSSSGGG-GCSCCSBHHHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred CcchhhhhhhhccccccCcccchhcccccccccccceecccccc-cccCCCCHHHHHHHHHHhCCceEEEeeecCCcc
Confidence 4321 0 012233455 459999999999999999999999999987653
No 4
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=100.00 E-value=2.3e-40 Score=379.43 Aligned_cols=469 Identities=14% Similarity=0.122 Sum_probs=248.5
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHH-HHHHH----HHHHHhcCCcccccccCC
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQ-LAFTW----MERQKLGGSYSSHRAQSE 115 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~-l~~~~----~~~~~~~~~~~~~~~~~~ 115 (695)
+.|+|+|||||+++|+|||||||++|.|+.||+++++++++|++++++.++. +++.+ .++.....+..+.....+
T Consensus 48 ~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (565)
T 4gx0_A 48 RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTR 127 (565)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCC
T ss_pred CCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence 4589999999999999999999999999999999999999999999998887 44433 333222222222235678
Q ss_pred ceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCcccc-ceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQ-RVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~-~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
+|+||||||..+..+++.|.+.. .++|+++..+ +.++.+. .. ++.++.||++++++|++|++++|
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~~-------~~vvvid~~~--~~~~~~~-----~~~~~~~i~Gd~~~~~~L~~a~i~~a 193 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESRN-------HLFVVVTDNY--DQALHLE-----EQEGFKVVYGSPTDAHVLAGLRVAAA 193 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTTT-------CCEEEEESCH--HHHHHHH-----HSCSSEEEESCTTCHHHHHHTTGGGC
T ss_pred CeEEEECCChHHHHHHHHHHHCC-------CCEEEEECCH--HHHHHHH-----HhcCCeEEEeCCCCHHHHHhcCcccC
Confidence 99999999999999998887632 3677776543 2333332 23 78999999999999999999999
Q ss_pred cEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCChHH
Q psy8620 195 EACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGAST 272 (695)
Q Consensus 195 ~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl~~ 272 (695)
+++++ + .+|..|+.+++++|+++ +++|++++.++++...+ .|+|.||++++..++.|++.+..|+..
T Consensus 194 ~~vi~-t--------~~D~~n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~- 262 (565)
T 4gx0_A 194 RSIIA-N--------LSDPDNANLCLTVRSLC-QTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGAL- 262 (565)
T ss_dssp SEEEE-C--------SCHHHHHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC-----
T ss_pred CEEEE-e--------CCcHHHHHHHHHHHHhc-CceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccc-
Confidence 99887 3 35788999999999999 99999999999987655 499999999999999999999999986
Q ss_pred HHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCccccc
Q psy8620 273 LVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGE 352 (695)
Q Consensus 273 li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~ 352 (695)
.+++... .+.+++.+.++. +.
T Consensus 263 --~~~~~~~-----------------------------------------------------~~~~l~e~~v~~----s~ 283 (565)
T 4gx0_A 263 --AHILDSF-----------------------------------------------------GNLQIAELPVHG----TP 283 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cchhccc-----------------------------------------------------CCceEEEEEECC----Cc
Confidence 2222110 112333334432 36
Q ss_pred ccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeecccccccCCCCcccCCCCCCCCCCCCcccCC
Q psy8620 353 YEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQPRESNPRPSAHKAD 428 (695)
Q Consensus 353 ~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~ 428 (695)
+.|+++.|+ .+++++|+.+++ |+.+ +|.+++.++ ++|.+.++...++ ......-. . ..
T Consensus 284 l~G~~l~el--~~~~~~~~~vi~i~r~g~~~-~p~~~~~l~-~GD~L~v~g~~~~---l~~~~~~~---~--------~~ 345 (565)
T 4gx0_A 284 FAGKTIGES--GIRQRTGLSIIGVWERGSLT-TPQRETVLT-EQSLLVLAGTKSQ---LAALEYLI---G--------EA 345 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHc--CcchhcCCEEEEEEECCEEe-CCCCCcEeC-CCCEEEEEeCHHH---HHHHHHHh---c--------CC
Confidence 899999998 677788988876 6666 999999998 5777754333211 11011000 0 00
Q ss_pred CCCcccccccccccccccchhhhhhhcccccccceeecceeeeccccccccccCCceehhhHHhhhccCCceEEec--Ch
Q psy8620 429 APPSKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLF--SL 506 (695)
Q Consensus 429 ~~~~~~~i~G~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~fp~v~~~~--~~ 506 (695)
.+..++.++||-.....+. ..|.+.+.+ +. .+-......++. ..+.+-. +.
T Consensus 346 ~~~~~viIiG~G~~G~~la--~~L~~~g~~----v~------vid~d~~~~~~~---------------~~~i~gD~t~~ 398 (565)
T 4gx0_A 346 PEDELIFIIGHGRIGCAAA--AFLDRKPVP----FI------LIDRQESPVCND---------------HVVVYGDATVG 398 (565)
T ss_dssp -CCCCEEEECCSHHHHHHH--HHHHHTTCC----EE------EEESSCCSSCCS---------------SCEEESCSSSS
T ss_pred CCCCCEEEECCCHHHHHHH--HHHHHCCCC----EE------EEECChHHHhhc---------------CCEEEeCCCCH
Confidence 1126788999987664332 112222221 11 111111111111 1122222 77
Q ss_pred hHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHHHhhhhhh
Q psy8620 507 DDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKME 586 (695)
Q Consensus 507 ~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~~~ 586 (695)
+.|++||+..||.+|+..++ |..+++++...++++|++++|+...+++|.+.++..++|..
T Consensus 399 ~~L~~agi~~ad~vi~~~~~-----------d~~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~G~d~v-------- 459 (565)
T 4gx0_A 399 QTLRQAGIDRASGIIVTTND-----------DSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGADFV-------- 459 (565)
T ss_dssp THHHHHTTTSCSEEEECCSC-----------HHHHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHHTCSEE--------
T ss_pred HHHHhcCccccCEEEEECCC-----------chHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEE--------
Confidence 88999999999999999777 89999999999999999999999999999888875554432
Q ss_pred HHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeC-CCccCCCcHHHH
Q psy8620 587 KKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKIT-KDDMWIRTYGRL 665 (695)
Q Consensus 587 ~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~-~~~~~~~tf~~l 665 (695)
|.........+++....+.+..+-. .+..+.++ +..+.|||.+++
T Consensus 460 ----------------------i~p~~~~~~~i~~~~~~~~~~~~~~------------~~~~~~v~~~s~~~Gk~l~el 505 (565)
T 4gx0_A 460 ----------------------VSNASVGANILGNLLEHKESAFLSE------------GMAVFRRPLPPAMAGKTIAET 505 (565)
T ss_dssp ----------------------EEHHHHHHHHHHHHHHCC----------------------------------------
T ss_pred ----------------------EccchHHHHHHHHHhcchhhhhhhc------------CeEEEEEcCCCCcCCCCHHHc
Confidence 3444444555555555554433211 12223332 345889999998
Q ss_pred HHHHHhccCceeeEEEee--cCCCCCCCCC
Q psy8620 666 YQKLCSTTCEIPIGIYRT--QDMSSIESPQ 693 (695)
Q Consensus 666 f~~ll~~~~~i~iGlyR~--~~~~~~~~~~ 693 (695)
.+-.++|...+||+|. .....+|.++
T Consensus 506 --~l~~~~~~~v~aI~R~~~~~~~~~p~~~ 533 (565)
T 4gx0_A 506 --RLRPLTGCSIVAIEAPDRADILISPPPE 533 (565)
T ss_dssp ------------------------------
T ss_pred --chhhhcCCEEEEEEeCCCCceEECcCCC
Confidence 5555679999999998 6666656654
No 5
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=100.00 E-value=6.1e-35 Score=312.97 Aligned_cols=285 Identities=18% Similarity=0.209 Sum_probs=219.8
Q ss_pred HHHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCc
Q psy8620 28 FVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSY 107 (695)
Q Consensus 28 l~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~ 107 (695)
++.|...|.. .++|+|+||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.++...+ .+
T Consensus 31 ~~~~~~~~~~--~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~ 107 (336)
T 1lnq_A 31 IIYGTAGFHF--IEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMK-LM 107 (336)
T ss_dssp HHHHTTTTTT--SSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----------
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3445444421 35789999999999999999999999999999999999999999999999999988776653321 11
Q ss_pred ccccccCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHh
Q psy8620 108 SSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLA 187 (695)
Q Consensus 108 ~~~~~~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ 187 (695)
...+...++|++|||+|..+..+++.|.+. +. +++++.++ +..+ + + ..++.++.||++++++|+
T Consensus 108 ~~~~~~~~~~viI~G~G~~g~~l~~~L~~~-------g~-v~vid~~~--~~~~-~-~----~~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 108 GLIDVAKSRHVVICGWSESTLECLRELRGS-------EV-FVLAEDEN--VRKK-V-L----RSGANFVHGDPTRVSDLE 171 (336)
T ss_dssp --------CEEEEESCCHHHHHHHTTGGGS-------CE-EEEESCGG--GHHH-H-H----HTTCEEEESCTTSHHHHH
T ss_pred hhhhhcccCCEEEECCcHHHHHHHHHHHhC-------Cc-EEEEeCCh--hhhh-H-H----hCCcEEEEeCCCCHHHHH
Confidence 111112368999999999999998777652 24 66665443 2233 2 2 347899999999999999
Q ss_pred hcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHh
Q psy8620 188 RARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNC 265 (695)
Q Consensus 188 ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~ 265 (695)
++++++|++++++ .++|..|+++++.+|+++|++++++++.++++...+ .|+|.||++++..+..|++.+
T Consensus 172 ~a~i~~a~~vi~~--------~~~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~~G~d~vi~~~~~~~~~l~~~~ 243 (336)
T 1lnq_A 172 KANVRGARAVIVD--------LESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSI 243 (336)
T ss_dssp HTCSTTEEEEEEC--------CSSHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHHTTCSEEECHHHHHHHHHHHTS
T ss_pred hcChhhccEEEEc--------CCccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChhHhHHHHHHHHH
Confidence 9999999998884 357899999999999999999999999999987554 489999999999999999999
Q ss_pred cCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEecc
Q psy8620 266 TCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLA 345 (695)
Q Consensus 266 ~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~ 345 (695)
..|++.+++.+++... .+.+++.+.++
T Consensus 244 ~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~l~e~~v~ 270 (336)
T 1lnq_A 244 DDGYEAMFVQDVLAEE-----------------------------------------------------STRRMVEVPIP 270 (336)
T ss_dssp SCSHHHHHHHHHTSSC-----------------------------------------------------SSCEEEEEECC
T ss_pred hCccHHHHHHHHHcCc-----------------------------------------------------CCceEEEEEeC
Confidence 9999988887666431 22355556665
Q ss_pred CCcccccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeec
Q psy8620 346 DSRFFGEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIP 398 (695)
Q Consensus 346 ~s~~~~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~ 398 (695)
+ .+++.|+++.|+ .+++++|+.+++ |+..+||.++++++ ++|...++
T Consensus 271 ~---~s~~~Gk~l~el--~l~~~~~~~ii~i~r~~~~~~~P~~~~~l~-~gD~liv~ 321 (336)
T 1lnq_A 271 E---GSKLEGVSVLDA--DIHDVTGVIIIGVGRGDELIIDPPRDYSFR-AGDIILGI 321 (336)
T ss_dssp S---SCSSTTCBHHHH--CHHHHHCCEEEEEECSSCEESSCCTTCBCC-SSCEEEEE
T ss_pred C---CCCcCCCCHHHc--ccccccCeEEEEEEECCEEEECcCCCcEEc-CCCEEEEE
Confidence 5 347899999998 666778988776 67778999999988 57777543
No 6
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=99.72 E-value=1.1e-16 Score=162.05 Aligned_cols=203 Identities=17% Similarity=0.164 Sum_probs=157.7
Q ss_pred cCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 113 QSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..++|++|||+|..+..+++.|.+. +. |++++..+ +..+.+ . .++.++.||+++++.|++++++
T Consensus 7 ~~~~~viI~G~G~~G~~la~~L~~~-------g~-v~vid~~~--~~~~~~-~-----~~~~~i~gd~~~~~~l~~a~i~ 70 (234)
T 2aef_A 7 AKSRHVVICGWSESTLECLRELRGS-------EV-FVLAEDEN--VRKKVL-R-----SGANFVHGDPTRVSDLEKANVR 70 (234)
T ss_dssp ---CEEEEESCCHHHHHHHHHSTTS-------EE-EEEESCGG--GHHHHH-H-----TTCEEEESCTTCHHHHHHTTCT
T ss_pred CCCCEEEEECCChHHHHHHHHHHhC-------Ce-EEEEECCH--HHHHHH-h-----cCCeEEEcCCCCHHHHHhcCcc
Confidence 4678999999999999998877642 24 66665433 223322 1 3588999999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCCh
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGA 270 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl 270 (695)
+|+++++. ..+|..|+.+++.+|+++|+++|++++.++++...+ .|+|.||+++...+..|++.+..|++
T Consensus 71 ~ad~vi~~--------~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~~~~ 142 (234)
T 2aef_A 71 GARAVIVD--------LESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYE 142 (234)
T ss_dssp TCSEEEEC--------CSCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHTSSCSHH
T ss_pred hhcEEEEc--------CCCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHHCCCCEEECHHHHHHHHHHHHHcCccH
Confidence 99998884 457899999999999999999999999999886554 48999999999999999999999998
Q ss_pred HHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCccc
Q psy8620 271 STLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFF 350 (695)
Q Consensus 271 ~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~ 350 (695)
..++.+++... .+.+++.+.+++ .
T Consensus 143 ~~~~~~~~~~~-----------------------------------------------------~~~~~~e~~V~~---~ 166 (234)
T 2aef_A 143 AMFVQDVLAEE-----------------------------------------------------STRRMVEVPIPE---G 166 (234)
T ss_dssp HHHHHHHHC--------------------------------------------------------CCEEEEEECCT---T
T ss_pred HHHHHHHhcCC-----------------------------------------------------CCceEEEEEECC---C
Confidence 88886555321 123455556655 3
Q ss_pred ccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeec
Q psy8620 351 GEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIP 398 (695)
Q Consensus 351 ~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~ 398 (695)
+++.|+++.|+ .+++++|+.+++ ++.++||.++++++ .+|...++
T Consensus 167 s~~~Gk~l~el--~~~~~~~~~vi~i~R~~~~~~~p~~~~~l~-~GD~l~v~ 215 (234)
T 2aef_A 167 SKLEGVSVLDA--DIHDVTGVIIIGVGRGDELIIDPPRDYSFR-AGDIILGI 215 (234)
T ss_dssp BTTTTCBHHHH--CHHHHHCCEEEEEEETTEEEESCCTTCBCC-TTCEEEEE
T ss_pred CccCCCCHHHh--hhhhhcCeEEEEEEECCeEEeCCCCCCEEC-CCCEEEEE
Confidence 57899999998 566678987775 67888999999888 57777543
No 7
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=99.68 E-value=1.8e-16 Score=180.56 Aligned_cols=255 Identities=18% Similarity=0.173 Sum_probs=175.8
Q ss_pred cCCceEEEEccCcc------HHHHHHHHHHHhcCCCCCcceEEEecCCC-ccHHHHHHhcCCccccceEEEEcCCCChHh
Q psy8620 113 QSEKHVVVCSTTLH------ADTIMDFLNEFYAHPLLQNYYVVLLSPME-LDTTMRMILQVPIWAQRVIYIQGSCLKDGD 185 (695)
Q Consensus 113 ~~~~HvVI~G~~~~------~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~d 185 (695)
..++|||||+++.. -...+.=||....+.. +-.+||++.+.+ +..+++.+-+.| +|.++.|||+..+|
T Consensus 375 ~~~~HivvC~~~~~~s~~~gl~~fvmpLRasn~~~~-elk~IV~lg~~~~~~~ew~~l~nfp----~iy~~~Gspl~~~d 449 (726)
T 3mt5_A 375 VLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYH-ELKHIVFVGSIEYLKREWETLHNFP----KVSILPGTPLSRAD 449 (726)
T ss_dssp CCCSCEEEEEECCTTSCCCCTHHHHTGGGBTTSCGG-GCCCEEEEECHHHHHHHHHHHTTSS----SEEEEESCTTCHHH
T ss_pred cccCcEEEEEecCCCCcchhhhhheeecccccCCHh-HcCCEEEECCCccCHHHHHHHhcCC----ceEEecCCcCChHh
Confidence 46899999998543 2233333443222211 224899998754 445667665544 89999999999999
Q ss_pred HhhcccccccEEEEeccCC--CCCCccchHHHHHHHHHHhhh--------------------------------------
Q psy8620 186 LARARMNEAEACFVLAARN--YSDKTAADEHTILRSWAVKDF-------------------------------------- 225 (695)
Q Consensus 186 L~ra~i~~A~aviIla~~~--~~d~~~~D~~~i~~~laik~~-------------------------------------- 225 (695)
|++|+++.|++|+||+... ..|+.-.|.++|+.+|.+|.+
T Consensus 450 L~~~~i~~c~~cvils~~~~~~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (726)
T 3mt5_A 450 LRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQP 529 (726)
T ss_dssp HHHTTGGGCSEEEEEECC----------CHHHHHHHHHHHTCEEC-----------------------------------
T ss_pred HHHhCHhhCCEEEEecCCCCCcCCcccchhhhhhhhhcccccccccccccccccccccccccccccccccCccchhhhcc
Confidence 9999999999999998854 344556799999999999886
Q ss_pred ----CCCccEEEEEeCccchhhcc----------------CCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCC
Q psy8620 226 ----APDVPQYVQIFRPENKLHVK----------------FAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQE 285 (695)
Q Consensus 226 ----~p~i~Iiv~i~~~~~~~~~~----------------gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~ 285 (695)
+++++|++++.++.|...+. +|...+....+...||+++..+|.+.+++..|++.+.
T Consensus 530 ~~~~~~~i~iitEL~~~sni~fl~~~~~~~~~~~~~~~~~fa~G~~f~~s~ldsl~~~~~~n~~i~~~~~~litgg~--- 606 (726)
T 3mt5_A 530 SITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGA--- 606 (726)
T ss_dssp CCEEGGGSCEEEEESCGGGGTTSCSSSCCCTTSCGGGSHHHHTTCEEEGGGGGTHHHHHHHCHHHHHHHHHHHTSCC---
T ss_pred cccccCCCceEEEecCCccceeeeeccccCCCcceeecccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHhCCC---
Confidence 23579999999999976542 2222344555788999999999999999999997742
Q ss_pred CCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhh
Q psy8620 286 GQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHS 365 (695)
Q Consensus 286 ~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~ 365 (695)
....|+|..+-..-.+..-+.+.|+++ ..+.+.++.+++..+.....|+||+|+++.+
T Consensus 607 -t~~~e~~~~~~~~l~~~~s~~~~l~~r---------------------~rc~~~ql~l~~~~~~~~~~~~tfG~lF~~~ 664 (726)
T 3mt5_A 607 -TPELEALIAEENALRGGYSTPQTLANR---------------------DRCRVAQLALLDGPFADLGDGGCYGDLFCKA 664 (726)
T ss_dssp ----CHHHHHHHSSCCEECCCHHHHHTT---------------------CCCEEEEEETTTSTTTGGGTTCBHHHHHHHH
T ss_pred -chhHHHHhhhcccccCCcccchhcccc---------------------cccccccccccccchhhcccCCcHHHHHHHH
Confidence 233455654422111111122233332 5678888888876555456899999999999
Q ss_pred hhhhcceeec-----ce------------EEEecccceecccCCCeeeec
Q psy8620 366 HRKYGMKITK-----DD------------MWIRTYGRLYQKLCSTTCEIP 398 (695)
Q Consensus 366 ~~~~gi~lig-----~~------------i~lNP~~~~i~~~~~~~~~~~ 398 (695)
.+++|+.++| ++ ++.||+++..+. +.|.+++.
T Consensus 665 l~~~~~lciGlYR~~~~~~~~~~~~~~ryvitnP~~~~~l~-~~D~vf~l 713 (726)
T 3mt5_A 665 LKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYEFELV-PTDLIFCL 713 (726)
T ss_dssp HHHSCCEEEEEEEESCC----CCCCCCEEEEESCCTTCBCC-TTCEEEEE
T ss_pred HHhCCeeEEEeeeccCcccccccCCCCCeEEeCCCCCCccC-ccceEEEE
Confidence 9999999987 21 788999998887 57777654
No 8
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=181.35 Aligned_cols=254 Identities=17% Similarity=0.168 Sum_probs=180.8
Q ss_pred cCCceEEEEccCcc------HHHHHHHHHHHhcCCCCCcceEEEecCCCc-cHHHHHHhcCCccccceEEEEcCCCChHh
Q psy8620 113 QSEKHVVVCSTTLH------ADTIMDFLNEFYAHPLLQNYYVVLLSPMEL-DTTMRMILQVPIWAQRVIYIQGSCLKDGD 185 (695)
Q Consensus 113 ~~~~HvVI~G~~~~------~~~l~~~L~e~~~~~~~~~~~VVil~~~e~-~~~l~~~l~~p~~~~~v~~i~Gd~~~~~d 185 (695)
..++|||||+++.. -..++.=||..+.+.. +-.+|||+.+.++ ..+++.+-+ ..+|.|+.|||+..+|
T Consensus 399 ~~~nHivvC~~~~~~~~~~gl~~fv~PLRa~~~~~~-~l~~IVil~~~~~~~~~w~~i~~----Fp~Vy~v~Gspl~~~d 473 (798)
T 3naf_A 399 VLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYH-ELKHIVFVGSIEYLKREWETLHN----FPKVSILPGTPLSRAD 473 (798)
T ss_dssp CCCSCEEEEEECCSSSCCCCTHHHHHHHHCSSSCST-TCCCEEEEBCHHHHHHHHTTTTT----SSSEEBCBSCTTCHHH
T ss_pred ccCCCEEEEEecCCCcchhhhHHhhhhhhcccCCcc-ccCCEEEECCCCcCHHHHHHhhC----CCceEEecCCCCCHHH
Confidence 46899999998632 3455555665432321 2248999987543 344443333 3479999999999999
Q ss_pred HhhcccccccEEEEeccCC--CCCCccchHHHHHHHHHHhhh--------------------------------------
Q psy8620 186 LARARMNEAEACFVLAARN--YSDKTAADEHTILRSWAVKDF-------------------------------------- 225 (695)
Q Consensus 186 L~ra~i~~A~aviIla~~~--~~d~~~~D~~~i~~~laik~~-------------------------------------- 225 (695)
|+|||++.|++|+||++.. ..++.-.|+++|+.++.++.+
T Consensus 474 L~~anI~~a~~~VIls~~~~~~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (798)
T 3naf_A 474 LRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQP 553 (798)
T ss_dssp HHHTTSTTCSEEEEEESSCTTCCCSSSTTHHHHHHHHHHHHCCCC-----------------------------------
T ss_pred HHHhCHHhCCEEEEEcCCCCCCCChhhhhHHHHHhhhhhhhhccccccccccccccccccccccccccccccccchhhcc
Confidence 9999999999999998863 345556899999988887763
Q ss_pred ----CCCccEEEEEeCccchhhcc----------------C-CCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCC
Q psy8620 226 ----APDVPQYVQIFRPENKLHVK----------------F-AEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQ 284 (695)
Q Consensus 226 ----~p~i~Iiv~i~~~~~~~~~~----------------g-ad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~ 284 (695)
+|++||++++.++.|...+. + +..|+ ...+...|+.++..+|.+.+++..|++.+.
T Consensus 554 ~~~~~~~ipiitEL~~~~ni~fl~~~~~~~~~~~~~~~~~fa~G~~f-s~s~ldsl~~~~y~n~~~~~il~~lvtGg~-- 630 (798)
T 3naf_A 554 SITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAF-AVSVLDSLMSATYFNDNILTLIRTLVTGGA-- 630 (798)
T ss_dssp ---CTTCCCEEEEESSTTGGGGGSCCTTCCTTCCGGGSHHHHHTSEE-ETTHHHHHHHHHHHCTHHHHHHHHHHSCSC--
T ss_pred ccccCCCCceEEEecCCCccccccccCCCccCcceeeccccccccee-HHHHHHHHHHHHHhCHHHHHHHHHHHhCCC--
Confidence 35789999999999976542 1 12344 455888999999999999999999997642
Q ss_pred CCCCChhHHHHHhcCCC-CCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHh
Q psy8620 285 EGQISQEEWHRLYGRCS-GNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASF 363 (695)
Q Consensus 285 ~~~~~~~~w~~~y~~g~-~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~ 363 (695)
....|+|..+ +.|+ +..-+.+.++++ ..|.+-.+.|....+...+.|+||+|+++
T Consensus 631 --~~~~e~~~~~-~~~~~~~~~~~~~~~~r---------------------~~c~l~~l~L~~~p~~~~~~~~tfg~lf~ 686 (798)
T 3naf_A 631 --TPELEALIAE-ENALRGGYSTPQTLANR---------------------DRCRVAQLALLDGPFADLGDGGCYGDLFC 686 (798)
T ss_dssp --HHHHHHHTTT-SSSCCCCCCCTTGGGTT---------------------CCCEEEEEESTTSSTTTTTTTCCHHHHHT
T ss_pred --cHHHHHHhhh-ccccccCcCcccccccc---------------------ccceeccccccccCcccccccCcHHHHHH
Confidence 1223445432 2221 111222233333 56778888887665655689999999999
Q ss_pred hhhhhhcceeec-----c----------e--EEEecccceecccCCCeeeecc
Q psy8620 364 HSHRKYGMKITK-----D----------D--MWIRTYGRLYQKLCSTTCEIPI 399 (695)
Q Consensus 364 ~~~~~~gi~lig-----~----------~--i~lNP~~~~i~~~~~~~~~~~~ 399 (695)
.+.+++|+.++| + + ++.||++++++. +.|.+++..
T Consensus 687 ~~l~~~~~l~iGLYR~~~~~~~~~~~~~kryVitnPp~~~~l~-~~D~vf~l~ 738 (798)
T 3naf_A 687 KALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYEFELV-PTDLIFCLM 738 (798)
T ss_dssp HHHHTTCCEECEEEEESTTSSSCCCCCCCEEEEESCCTTCCCC-SSCEEEEEE
T ss_pred HHHHhCCcceeeeeecccccccCccccCCCeEEeCCCccCccC-CcCeEEEEE
Confidence 999999999987 1 1 899999999888 677776543
No 9
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=99.61 E-value=6e-15 Score=163.77 Aligned_cols=328 Identities=12% Similarity=0.112 Sum_probs=216.7
Q ss_pred ceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 116 ~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
-||||||.|..|..+++.|.+. +..|++++..+ +.++.+.. .-.+..+.||+++++.|++|++++|+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~-------~~~v~vId~d~--~~~~~~~~----~~~~~~i~Gd~~~~~~L~~Agi~~ad 70 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE-------NNDITIVDKDG--DRLRELQD----KYDLRVVNGHASHPDVLHEAGAQDAD 70 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST-------TEEEEEEESCH--HHHHHHHH----HSSCEEEESCTTCHHHHHHHTTTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC-------CCCEEEEECCH--HHHHHHHH----hcCcEEEEEcCCCHHHHHhcCCCcCC
Confidence 4899999999999998888653 24788887543 33443321 23678999999999999999999999
Q ss_pred EEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhh---c-----cCCCeEEehHHHHHHHHHHHhcC
Q psy8620 196 ACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLH---V-----KFAEFIVCEDELKYALLANNCTC 267 (695)
Q Consensus 196 aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~---~-----~gad~VI~~~el~~~lLa~s~~~ 267 (695)
+++.+ +++|..|+++++.+|+++|..++++++.++++... + -|.|.+|+|+.+.++.+++.+..
T Consensus 71 ~~ia~--------t~~De~Nl~~~~~Ak~~~~~~~~iar~~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~ 142 (461)
T 4g65_A 71 MLVAV--------TNTDETNMAACQVAFTLFNTPNRIARIRSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQY 142 (461)
T ss_dssp EEEEC--------CSCHHHHHHHHHHHHHHHCCSSEEEECCCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTS
T ss_pred EEEEE--------cCChHHHHHHHHHHHHhcCCccceeEeccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccC
Confidence 88774 46899999999999999999999999999976321 1 26899999999999999999888
Q ss_pred CChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCC
Q psy8620 268 PGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADS 347 (695)
Q Consensus 268 PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s 347 (695)
||...+.. ... ...++..+.+++
T Consensus 143 p~~~~~~~----f~~----------------------------------------------------g~~~l~e~~v~~- 165 (461)
T 4g65_A 143 PGALQVVS----FAE----------------------------------------------------EKVSLVAVKAYY- 165 (461)
T ss_dssp TTCSEEEE----ETT----------------------------------------------------TTEEEEEEECCT-
T ss_pred CCeEEEEE----ecc----------------------------------------------------ceEEEEEEEecC-
Confidence 88744322 110 223555556655
Q ss_pred cccccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeecccccccCCCCcccCCCCCCCCCCCC
Q psy8620 348 RFFGEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQPRESNPRPS 423 (695)
Q Consensus 348 ~~~~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 423 (695)
.+++.|++..++..+ ..+.++.+.+ |+. +-|.++++++ ++|.++++...++-.... +.-..
T Consensus 166 --~s~l~g~~l~~l~~~-~p~~~~~I~aI~R~g~~-iiP~g~t~i~-~gD~v~~i~~~~~i~~~~--~~~g~-------- 230 (461)
T 4g65_A 166 --GGPLVGNALSALREH-MPHIDTRVAAIFRQGRP-IRPQGTTIIE-ADDEVFFVAASNHIRSVM--SELQR-------- 230 (461)
T ss_dssp --TSSSTTCBHHHHHHT-STTSCEEEEEEEETTEE-ECCCTTCBCC-TTCEEEEEEETTTHHHHH--HHTTG--------
T ss_pred --CCeecCCcHHHHHhh-CCCCceEEEEEEECCee-ccCCCCceec-CCCEEEEEeccchHHHHH--Hhhcc--------
Confidence 357999999998422 2334555554 554 4488888888 477775544321100000 00000
Q ss_pred cccCCCCCcccccccccccccccchhhhhhhcccccccceeecceeeeccccccccccCCceehhhHHhhh-ccCCceEE
Q psy8620 424 AHKADAPPSKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSL-AFYSVEFY 502 (695)
Q Consensus 424 i~~~~~~~~~~~i~G~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~-~~fp~v~~ 502 (695)
.+.+..++.+.|--.... .+...++. .+. +.+...++. --+.+ ..+|+..+
T Consensus 231 ---~~~~~~~v~I~GgG~ig~---~lA~~L~~------~~~-----v~iIE~d~~-----------r~~~la~~l~~~~V 282 (461)
T 4g65_A 231 ---LEKPYRRIMIVGGGNIGA---SLAKRLEQ------TYS-----VKLIERNLQ-----------RAEKLSEELENTIV 282 (461)
T ss_dssp ---GGSCCCEEEEECCSHHHH---HHHHHHTT------TSE-----EEEEESCHH-----------HHHHHHHHCTTSEE
T ss_pred ---ccccccEEEEEcchHHHH---HHHHHhhh------cCc-----eEEEecCHH-----------HHHHHHHHCCCceE
Confidence 001223455555333221 22222211 110 111111111 11112 22566777
Q ss_pred ec----ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccch
Q psy8620 503 LF----SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQD 576 (695)
Q Consensus 503 ~~----~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~ 576 (695)
+. +.+-|+++||..||.+|-+..+ |-..|++.+-.++++.. ++|+-+.++++.+.++-.+.|
T Consensus 283 i~GD~td~~~L~ee~i~~~D~~ia~T~~-----------De~Ni~~~llAk~~gv~-kvIa~vn~~~~~~l~~~~gid 348 (461)
T 4g65_A 283 FCGDAADQELLTEENIDQVDVFIALTNE-----------DETNIMSAMLAKRMGAK-KVMVLIQRGAYVDLVQGGVID 348 (461)
T ss_dssp EESCTTCHHHHHHTTGGGCSEEEECCSC-----------HHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHCSSSSC
T ss_pred EeccccchhhHhhcCchhhcEEEEcccC-----------cHHHHHHHHHHHHcCCc-cccccccccchhhhhhccccc
Confidence 76 7777999999999999999877 88999999888887654 889988888888887754444
No 10
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.56 E-value=4.8e-16 Score=143.57 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHH
Q psy8620 2 FQNDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICV 81 (695)
Q Consensus 2 ~~~~~~~~~~r~~~~l~~~l~il~~~l~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~ 81 (695)
|+..+++.++...-..+..+++++..+..+..++.+ ++.++|.||+||+++|+|||||||++|.|+.||+++++++++
T Consensus 3 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~e--~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~ 80 (137)
T 4h33_A 3 YIVPIYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIE--PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLF 80 (137)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHTHHHHHHHC--SSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHH
Confidence 455566655443333333333333333344555544 457899999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHH
Q psy8620 82 ALIVLPTQFEQLAFTWME 99 (695)
Q Consensus 82 gi~~~~~~i~~l~~~~~~ 99 (695)
|++++++.++.+++.+.+
T Consensus 81 g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 81 GIAFIGMITSTITNFFRC 98 (137)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 11
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.53 E-value=2.3e-14 Score=163.83 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=107.8
Q ss_pred ceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 116 ~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
+|++|||+|..+..+++.|.+.. .++++++.++- . .+ ... .++.||+++++.|+++++++|+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g-------~~v~vid~d~~-~-~~--------~~~-~~i~gD~t~~~~L~~agi~~ad 410 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKP-------VPFILIDRQES-P-VC--------NDH-VVVYGDATVGQTLRQAGIDRAS 410 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSCC-S-SC--------CSS-CEEESCSSSSTHHHHHTTTSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-------CCEEEEECChH-H-Hh--------hcC-CEEEeCCCCHHHHHhcCccccC
Confidence 89999999999999999998752 36777765431 1 11 112 7999999999999999999999
Q ss_pred EEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCChHHH
Q psy8620 196 ACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGASTL 273 (695)
Q Consensus 196 aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl~~l 273 (695)
+++++ .++|..|+++++.+|+++|+++|++++.++++...+ .|+|.||+++...+..|++.+..|.+..+
T Consensus 411 ~vi~~--------~~~d~~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~~~~i~~~~~~~~~~~~ 482 (565)
T 4gx0_A 411 GIIVT--------TNDDSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEHKESAFL 482 (565)
T ss_dssp EEEEC--------CSCHHHHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHHTCSEEEEHHHHHHHHHHHHHHCC-----
T ss_pred EEEEE--------CCCchHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEccchHHHHHHHHHhcchhhhhh
Confidence 99984 457899999999999999999999999999986554 49999999999999999999886644221
Q ss_pred HHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccccc
Q psy8620 274 VTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEY 353 (695)
Q Consensus 274 i~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~ 353 (695)
- .+.+++.+.. .+.+
T Consensus 483 ~------------------------------------------------------------~~~~~~~v~~-----~s~~ 497 (565)
T 4gx0_A 483 S------------------------------------------------------------EGMAVFRRPL-----PPAM 497 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h------------------------------------------------------------cCeEEEEEcC-----CCCc
Confidence 0 0112222222 2368
Q ss_pred cCcchhHHHhhhhhhhcceeec------ceEEEecccceecccCCCeeeecc
Q psy8620 354 EGKSFTYASFHSHRKYGMKITK------DDMWIRTYGRLYQKLCSTTCEIPI 399 (695)
Q Consensus 354 ~G~tf~~~~~~~~~~~gi~lig------~~i~lNP~~~~i~~~~~~~~~~~~ 399 (695)
.||++.|+ .+++++|+.+++ ++.+.||.+++.++ ++|...++.
T Consensus 498 ~Gk~l~el--~l~~~~~~~v~aI~R~~~~~~~~~p~~~~~l~-~GD~liv~g 546 (565)
T 4gx0_A 498 AGKTIAET--RLRPLTGCSIVAIEAPDRADILISPPPETILA-EGARLILIG 546 (565)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCHHHc--chhhhcCCEEEEEEeCCCCceEECcCCCCEEC-CCCEEEEEE
Confidence 99999999 778888988774 56788999999998 577775433
No 12
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=99.53 E-value=3.6e-14 Score=141.88 Aligned_cols=196 Identities=13% Similarity=0.043 Sum_probs=150.8
Q ss_pred eEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 117 HVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 117 HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
+|+|||+|..+..+...|.+.. .+|++++..+ +..+.+.+ ..++.++.||+++++.|+++++++|+.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g-------~~v~vid~~~--~~~~~l~~----~~~~~~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRK-------YGVVIINKDR--ELCEEFAK----KLKATIIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTT-------CCEEEEESCH--HHHHHHHH----HSSSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred EEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCH--HHHHHHHH----HcCCeEEEcCCCCHHHHHhcCcccCCE
Confidence 5899999999999999998742 3677776543 22332221 136789999999999999999999999
Q ss_pred EEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCChHHHH
Q psy8620 197 CFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGASTLV 274 (695)
Q Consensus 197 viIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl~~li 274 (695)
+++. ..+|..|+..+..+|+.+|..++++++.++++...+ .|+|.||++++..+..|++.+..|++..++
T Consensus 69 vi~~--------~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~~~~~~~l~~~~~~~~~~~~~ 140 (218)
T 3l4b_C 69 VVIL--------TPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNLTTLITNTVEALIFPDEFSSII 140 (218)
T ss_dssp EEEC--------CSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCHHHHHHHHHHHHHCTTSCEECS
T ss_pred EEEe--------cCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECHHHHHHHHHHHHhccCCceEEE
Confidence 8884 457889999999999999999999999999887655 489999999999999999999888765432
Q ss_pred HHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCccccccc
Q psy8620 275 TLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYE 354 (695)
Q Consensus 275 ~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~ 354 (695)
. . +.+.+++.+.+++ .+++.
T Consensus 141 ~----~-----------------------------------------------------~~~~~~~e~~v~~---~s~~~ 160 (218)
T 3l4b_C 141 P----L-----------------------------------------------------EQGIEFLSVNVEE---DSPVV 160 (218)
T ss_dssp C----C-----------------------------------------------------STTEEEEEEECCT---TCSST
T ss_pred E----e-----------------------------------------------------CCCcEEEEEEECC---CCccc
Confidence 1 0 0235677777765 35799
Q ss_pred CcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeecc
Q psy8620 355 GKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIPI 399 (695)
Q Consensus 355 G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~~ 399 (695)
|+++.|+ .+.+ |+.+++ ++. ++|.+++.++ ++|...++.
T Consensus 161 gk~l~el--~~~~--~~~i~~i~R~~~~-~~p~~~~~l~-~gD~l~v~g 203 (218)
T 3l4b_C 161 GKKLKDL--PLPR--DSIIAAIVRGGVL-VVPRGDTEIL-SGDKLYVIV 203 (218)
T ss_dssp TCBTTTS--CCCT--TEEEEEEEESSCE-ECCCTTCBCC-TTEEEEEEE
T ss_pred CCCHHHC--CCCC--CcEEEEEEECCEE-EcCCCCCEEC-CCCEEEEEE
Confidence 9999998 4443 777765 554 4699999998 577775443
No 13
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=99.51 E-value=6.2e-14 Score=164.41 Aligned_cols=254 Identities=15% Similarity=0.179 Sum_probs=160.3
Q ss_pred cCCceEEEEccCcc---HHHHHHH---HHHHhcCCCCCcceEEEecCCCccH-HHHHHhcCCccccceEEEEcCCCChHh
Q psy8620 113 QSEKHVVVCSTTLH---ADTIMDF---LNEFYAHPLLQNYYVVLLSPMELDT-TMRMILQVPIWAQRVIYIQGSCLKDGD 185 (695)
Q Consensus 113 ~~~~HvVI~G~~~~---~~~l~~~---L~e~~~~~~~~~~~VVil~~~e~~~-~l~~~l~~p~~~~~v~~i~Gd~~~~~d 185 (695)
..++|+||||.+.. ...+..| |+..+.+ ..+-.+||++.+.++.. +++.+-. ...|.|+.|++++.+|
T Consensus 383 ~~~nhivvc~~~~~~~~~~gL~~fi~PLRa~~~~-~~el~pIViL~~~~~~~~~w~~i~~----Fp~Vy~~~GSpl~~~D 457 (722)
T 4hpf_A 383 KFRNHIVACVFGDAHSAPMGLRNFVMPLRASNYT-RKELKDIVFIGSLDYLQREWRFLWN----FPQIYILPGCALYSGD 457 (722)
T ss_dssp CCCSCEEEEECCCTTSCCCCSHHHHGGGGBTTSC-GGGCCCEEEEECHHHHHHHGGGGTT----CSSEEEEESCTTCHHH
T ss_pred cccCCEEEEeccCcccccccchhheeeccccccc-cccCCCEEEEeCCCCCHHHHHHHhc----CCCEEEEECCcCCHHH
Confidence 46799999985321 1123333 3332211 12224799998766543 2332222 3589999999999999
Q ss_pred HhhcccccccEEEEeccCCCC--CCccchHHHHHHHHHHhhh-------CCCccEEEEEeCccchhhcc-----------
Q psy8620 186 LARARMNEAEACFVLAARNYS--DKTAADEHTILRSWAVKDF-------APDVPQYVQIFRPENKLHVK----------- 245 (695)
Q Consensus 186 L~ra~i~~A~aviIla~~~~~--d~~~~D~~~i~~~laik~~-------~p~i~Iiv~i~~~~~~~~~~----------- 245 (695)
|+|||+..|+.|+|++..... +..-.|+++|++++.++++ .|++++++++.++.|...+.
T Consensus 458 L~ragi~~a~~vVIl~~~~~~~~~~~~~D~~tI~~~~~I~~l~~~~~~~~~~i~iitEL~~~sN~~fl~~~~~~~~~~~~ 537 (722)
T 4hpf_A 458 LHAANIEQCSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDEKSNCRKVPILTELKNPSNIHFIEQLGGLEGSLQE 537 (722)
T ss_dssp HHHTTGGGCSEEEEECCCCCC-----CCSHHHHHHHHHHHSCCC-------CCCEEEECSSGGGHHHHHHHHTCCTTTCC
T ss_pred HHhcCcccccEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHhhhhccCCCCcEEEEecCcccchhhcccccchhcccC
Confidence 999999999999999875432 2334799999999999998 47889999999999865431
Q ss_pred --------C-CCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccc
Q psy8620 246 --------F-AEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFF 316 (695)
Q Consensus 246 --------g-ad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~ 316 (695)
+ +..|+ ...+...||.|+...|.+.+++..|+..+.+... +.+..+-....+...+...++..
T Consensus 538 ~~~~~s~~FAsG~vf-s~smldsLl~qsf~n~~i~~ii~~Ll~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--- 609 (722)
T 4hpf_A 538 TNLHLSTAFSTGTVF-SGSFLDSLLATAFYNYHVLELLQMLVTGGVSSQL----EQHLDKDKVYGVADSCTSLLSGR--- 609 (722)
T ss_dssp SSGGGSHHHHHTSEE-CGGGGGTHHHHHHHCHHHHHHHHHHHHSCCC----------------------------CS---
T ss_pred cccccchhhhcccEe-HHHHHHHHHHHHHhcHHHHHHHHHHhcCCCcchh----hhhhhhccccccCcccchhcccc---
Confidence 1 13455 4447788999999999999999999976432211 11110000000111122222211
Q ss_pred cccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec-----c----------eEEEe
Q psy8620 317 GEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK-----D----------DMWIR 381 (695)
Q Consensus 317 ~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig-----~----------~i~lN 381 (695)
..+.+....+..-.+...+.|+||++++.++.+++|++++| + -++.|
T Consensus 610 ------------------~~~~i~~~~L~~~~~~~~~~~~tfg~lF~~ll~~~~~i~IGLyR~~~~~~~~~~~~~yV~tn 671 (722)
T 4hpf_A 610 ------------------NRCKLGLLSLHETILSDVNPRNTFGQLFCGSLDLFGILCVGLYRIIDEEELNPENKRFVITR 671 (722)
T ss_dssp ------------------CCCEEEEECSSSSGGGGCSCCSBHHHHHHHHHHHHCCEEEEEEEECCCC-----CCEEEEES
T ss_pred ------------------cccccccceecccccccccCCCCHHHHHHHHHHhCCceEEEeeecCCcccCCCCCCCEEEeC
Confidence 22333333333323344689999999999999899998887 1 28999
Q ss_pred cccceecccCCCeeeec
Q psy8620 382 TYGRLYQKLCSTTCEIP 398 (695)
Q Consensus 382 P~~~~i~~~~~~~~~~~ 398 (695)
|++++.+. ++|.+++.
T Consensus 672 P~~~~~l~-~~D~Vyvl 687 (722)
T 4hpf_A 672 PANEFKLL-PSDLVFCA 687 (722)
T ss_dssp CCSSCBCC-SSCEEEEE
T ss_pred CCCCCeEC-CCCEEEEE
Confidence 99999998 57766543
No 14
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.48 E-value=4.9e-14 Score=123.58 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=57.7
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQK 102 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~ 102 (695)
....+|.||+||+++|+|||||||++|.|+.||+++++.+++|++++++.++.+++.+.++.+
T Consensus 36 ~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 36 AALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999999999999999999987766544
No 15
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.48 E-value=3.3e-14 Score=123.13 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 23 ILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 23 il~~~l~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
++++.++.|...|.. .|+++++||+||+++|+|||||||++|.|..||+++++++++|+.++++.++.++..+....
T Consensus 13 ~~~~~~~~g~~~~~~--~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 13 LTILTLISGTIFYST--VEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp HHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333444455555432 35689999999999999999999999999999999999999999999999999998766543
No 16
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.47 E-value=3.4e-14 Score=126.85 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHH
Q psy8620 24 LSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTW 97 (695)
Q Consensus 24 l~~~l~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~ 97 (695)
+++.++.|...+.. .|++++.||+||+++|+|||||||++|.|+.||+++++.+++|+.++++.++.+++.+
T Consensus 31 ~~~~~~~g~~~~~~--~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~ 102 (114)
T 2q67_A 31 TILTLISGTIFYST--VEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102 (114)
T ss_dssp HHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455554431 3468999999999999999999999999999999999999999999999999988765
No 17
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.45 E-value=9.4e-14 Score=125.60 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=58.6
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQK 102 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~ 102 (695)
+..+++.||+||+++|+|||||||++|.|+.||+++++.++.|++++++.++.+++.+.++.+
T Consensus 57 ~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 57 AQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999999999998877654
No 18
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=99.45 E-value=8.4e-13 Score=122.46 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=112.4
Q ss_pred ccCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 112 AQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 112 ~~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
...++||+|||+|..+..+.+.|.+.. .+|++++..+ +.++.+. ..++.++.||+++++.|+++++
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~~~g-------~~v~vid~~~--~~~~~~~-----~~g~~~i~gd~~~~~~l~~a~i 69 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLLASD-------IPLVVIETSR--TRVDELR-----ERGVRAVLGNAANEEIMQLAHL 69 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHHHTT-------CCEEEEESCH--HHHHHHH-----HTTCEEEESCTTSHHHHHHTTG
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEECCH--HHHHHHH-----HcCCCEEECCCCCHHHHHhcCc
Confidence 357899999999999999999998742 3677776543 2333322 2478899999999999999999
Q ss_pred ccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCC
Q psy8620 192 NEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCP 268 (695)
Q Consensus 192 ~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~P 268 (695)
++|+.+++. ..+|..|...+..+|+++|+++|++++.++++...+ .|+|.||+|+...+..|++.+..|
T Consensus 70 ~~ad~vi~~--------~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~a~~i~~~l~~~ 140 (140)
T 3fwz_A 70 ECAKWLILT--------IPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETP 140 (140)
T ss_dssp GGCSEEEEC--------CSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHHHHHHHHHCC
T ss_pred ccCCEEEEE--------CCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCCEEECchHHHHHHHHHHhhCC
Confidence 999998883 457888999999999999999999999999887554 489999999999999999988776
No 19
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.43 E-value=1.8e-13 Score=128.17 Aligned_cols=70 Identities=24% Similarity=0.401 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHH
Q psy8620 24 LSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAF 95 (695)
Q Consensus 24 l~~~l~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~ 95 (695)
+++.++.|...|.. .++|+|+||+||+++|+|||||||++|.|..||+++++++++|++++++.++.++.
T Consensus 34 ~~~~~~~g~~~~~~--~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 34 TFLTLTSGTIFYST--VEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHHHH--TSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555532 35689999999999999999999999999999999999999999999999998875
No 20
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.42 E-value=6.3e-14 Score=117.42 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=53.5
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTW 97 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~ 97 (695)
|++++.||+||+++|+|||||||++|.|..||+++++.++.|+.++++.++.+++.+
T Consensus 25 e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 25 EGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999988654
No 21
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=99.39 E-value=5.8e-12 Score=118.48 Aligned_cols=145 Identities=18% Similarity=0.252 Sum_probs=117.4
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc--HHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD--TTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~--~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
.++|++|||+|..+..+.+.|.+.. .+|+++++.+.+ +.+.... ..++.++.||+++++.|+++++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g-------~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i 69 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRG-------QNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTT-------CCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-------CCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcCh
Confidence 3579999999999999999998742 367777764321 1222211 3468899999999999999999
Q ss_pred ccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCC
Q psy8620 192 NEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPG 269 (695)
Q Consensus 192 ~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PG 269 (695)
+.|+.+++. ..+|..|+.+++.+|+++|..+|++++.++++...+ .|+|.|+++.++.+..|++.+..|+
T Consensus 70 ~~ad~vi~~--------~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~~~~l~~~~~~~~ 141 (153)
T 1id1_A 70 DRCRAILAL--------SDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEE 141 (153)
T ss_dssp TTCSEEEEC--------SSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHTTCC
T ss_pred hhCCEEEEe--------cCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEcHHHHHHHHHHHHHhCCC
Confidence 999998884 457899999999999999999999999999886544 4899999999999999999999887
Q ss_pred h-HHHHHHHh
Q psy8620 270 A-STLVTLLL 278 (695)
Q Consensus 270 l-~~li~~Ll 278 (695)
+ .+++.+++
T Consensus 142 ~~~~~~~~~~ 151 (153)
T 1id1_A 142 INNDMLVSML 151 (153)
T ss_dssp CCHHHHHHTT
T ss_pred CcHHHHHHHh
Confidence 6 55666554
No 22
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.39 E-value=1.7e-13 Score=126.98 Aligned_cols=62 Identities=24% Similarity=0.353 Sum_probs=56.5
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
...++|+||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.++.
T Consensus 36 ~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 36 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred cccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999987765543
No 23
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.38 E-value=2.6e-13 Score=142.86 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHH-HH-HHHHHHHHhhcc----CCCCCChhhhhhheeeeeeccCcCCcccCCcccchh
Q psy8620 2 FQNDLHRAMQKS-QSALSQQLMIL-SA-TFVCGIQHFQRA----GHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLY 74 (695)
Q Consensus 2 ~~~~~~~~~~r~-~~~l~~~l~il-~~-~l~~g~~~~~~~----~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~ 74 (695)
|+.|++..+.+. ++.++..++++ ++ .++.++.++.++ +.+..+|.+||||+++|+|||||||++|.|+.||++
T Consensus 47 ~~~d~~~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~ 126 (333)
T 1p7b_A 47 VWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAI 126 (333)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHH
Confidence 567777665443 33333333222 12 223344444332 224568999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEccC
Q psy8620 75 MVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTT 124 (695)
Q Consensus 75 ~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~~ 124 (695)
+++.+++|++++++.++.+...+.+.. . +...++|+||||++
T Consensus 127 ~~~~~l~G~~~~a~~ig~i~~~~~~~~---~-----r~~fs~~~VI~~~~ 168 (333)
T 1p7b_A 127 ATLEIFVGMSGIALSTGLVFARFARPR---A-----KIMFARHAIVRPFN 168 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCC---C-----CCEECSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHHhCCCEEEcCCC
Confidence 999999999999999988876543211 1 13467999999985
No 24
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.38 E-value=2.9e-13 Score=127.29 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=57.2
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
....++.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.++.
T Consensus 80 ~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 80 AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp SSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45579999999999999999999999999999999999999999999999999998876643
No 25
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.34 E-value=4.7e-13 Score=140.50 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccC-----CCCCChhhhhhheeeeeeccCcCCcccCCcccch
Q psy8620 2 FQNDLHRAMQKSQSALSQQLMIL---SATFVCGIQHFQRAG-----HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQL 73 (695)
Q Consensus 2 ~~~~~~~~~~r~~~~l~~~l~il---~~~l~~g~~~~~~~~-----~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri 73 (695)
|+.|++..+.+..+.....++++ ++.+++|.+ +.++. ...++|.|||||+++|+|||||||++|.|..||+
T Consensus 29 ~l~dl~~tl~~~~~~~~ll~f~~~~~~~~~~fa~~-~~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~ 107 (321)
T 2qks_A 29 YLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATL-YMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHW 107 (321)
T ss_dssp CCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH-HHTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHH
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH-HHcCCccccCcCCcchhheeeeeeEEeccccCCCcCcccHHHHH
Confidence 67888888877544433333322 222334433 33322 1245899999999999999999999999999999
Q ss_pred hHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEccC
Q psy8620 74 YMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTT 124 (695)
Q Consensus 74 ~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~~ 124 (695)
++++.+++|++++++.++.+...+.+..++. .....++|.|||+.+
T Consensus 108 ~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r~-----~~i~fS~~avI~~~~ 153 (321)
T 2qks_A 108 IATLEIFVGMSSIALATGCAFIKMSQPKKRA-----ETLMFSEHAVISMRD 153 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCGG-----GTEEECSCEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhcCCceEEecCC
Confidence 9999999999999999998876654321111 112457899999864
No 26
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.34 E-value=1.7e-13 Score=142.75 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEE
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVV 119 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvV 119 (695)
....+|+|||||+++|+|||||||++|.|+.||+++++.+++|+++++..++.+...+.+. .. +...++|.|
T Consensus 78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~------~~--r~~fs~~~v 149 (301)
T 1xl4_A 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP------TA--GVLFSSRMV 149 (301)
T ss_dssp SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------CC--CEEECSCEE
T ss_pred CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------Hh--hhccCCeEE
Confidence 3468999999999999999999999999999999999999999999999998776654211 11 134679999
Q ss_pred EEccCc
Q psy8620 120 VCSTTL 125 (695)
Q Consensus 120 I~G~~~ 125 (695)
|||++.
T Consensus 150 I~~~~g 155 (301)
T 1xl4_A 150 ISDFEG 155 (301)
T ss_dssp EEEETT
T ss_pred EecCCC
Confidence 999853
No 27
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.25 E-value=8.9e-12 Score=124.94 Aligned_cols=60 Identities=23% Similarity=0.369 Sum_probs=56.5
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMER 100 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~ 100 (695)
..+++.||+||+++|+|||||||++|.|+.||+++++.++.|+++++..++.+++.+.++
T Consensus 162 ~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 162 SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999999999999999999999999887765
No 28
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.24 E-value=8.8e-12 Score=139.90 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEE
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVV 120 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI 120 (695)
...++++|+||+++|+|||||||+.|.|+.||+++++++++|+++++..++.+.+.+.+..+.+.. +...+.++|+++
T Consensus 372 ~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~--~~~~~l~~h~ii 449 (514)
T 2r9r_B 372 QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE--GEEQAQYLQVTS 449 (514)
T ss_dssp SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------------
T ss_pred cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCEEE
Confidence 457899999999999999999999999999999999999999999999999998876553322111 122457899999
Q ss_pred EccCccHH
Q psy8620 121 CSTTLHAD 128 (695)
Q Consensus 121 ~G~~~~~~ 128 (695)
||+.....
T Consensus 450 cg~~~~~~ 457 (514)
T 2r9r_B 450 SPKIPSSP 457 (514)
T ss_dssp --------
T ss_pred eCCCccch
Confidence 99965443
No 29
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.20 E-value=4.1e-11 Score=130.88 Aligned_cols=131 Identities=11% Similarity=-0.019 Sum_probs=107.8
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
.++||||||+|+.+..+.+.|.+.. .+|++++..+ +.++.+. ..++.++.||+++++.|+++++++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g-------~~vvvId~d~--~~v~~~~-----~~g~~vi~GDat~~~~L~~agi~~ 68 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSG-------VKMVVLDHDP--DHIETLR-----KFGMKVFYGDATRMDLLESAGAAK 68 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT-------CCEEEEECCH--HHHHHHH-----HTTCCCEESCTTCHHHHHHTTTTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-------CCEEEEECCH--HHHHHHH-----hCCCeEEEcCCCCHHHHHhcCCCc
Confidence 4589999999999999999999742 4677776543 2333322 347889999999999999999999
Q ss_pred ccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhc
Q psy8620 194 AEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCT 266 (695)
Q Consensus 194 A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~ 266 (695)
|+++|+. .++|..|+.++..+|+++|+++|+|++.++++...+ .|+|.||.+....+..|+..++
T Consensus 69 A~~viv~--------~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~~Gad~Vi~~~~~~a~~la~~~L 135 (413)
T 3l9w_A 69 AEVLINA--------IDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLAL 135 (413)
T ss_dssp CSEEEEC--------CSSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHTTCSSCEETTHHHHHHHHHHHH
T ss_pred cCEEEEC--------CCChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEECccHHHHHHHHHHHH
Confidence 9998884 457899999999999999999999999999886554 5999999998888888877654
No 30
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=99.16 E-value=3.8e-10 Score=104.25 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=108.3
Q ss_pred CceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 115 ~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
.+|++|||+|..+..+...|.+.. .+|++++..+ +..+.+. ..++.++.||+++++.|+++++++|
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g-------~~V~~id~~~--~~~~~~~-----~~~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG-------KKVLAVDKSK--EKIELLE-----DEGFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT-------CCEEEEESCH--HHHHHHH-----HTTCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEECCH--HHHHHHH-----HCCCcEEECCCCCHHHHHhCCcccC
Confidence 369999999999999999998742 3677776543 2233222 2367889999999999999999999
Q ss_pred cEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCCh
Q psy8620 195 EACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGA 270 (695)
Q Consensus 195 ~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl 270 (695)
+.+|+. ..+|..|+..+..+|+++ ..+|++++.++++...+ .|+|.|++|++..+..|++.+..|+.
T Consensus 72 d~vi~~--------~~~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~~~~l~~~i~~p~~ 140 (141)
T 3llv_A 72 SAVLIT--------GSDDEFNLKILKALRSVS-DVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMDKIKKMET 140 (141)
T ss_dssp SEEEEC--------CSCHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHHHHHHC--
T ss_pred CEEEEe--------cCCHHHHHHHHHHHHHhC-CceEEEEEcChhHHHHHHHcCCCEEECHHHHHHHHHHHHHhCccc
Confidence 998874 347889999999999999 89999999999886554 48999999999999999999999975
No 31
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.13 E-value=2.4e-12 Score=122.87 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=53.7
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
..++|+||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~ 121 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 121 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSS
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999988876554
No 32
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.11 E-value=2.6e-11 Score=125.85 Aligned_cols=58 Identities=26% Similarity=0.435 Sum_probs=53.2
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccch------hHHHhHHHHHHhhccchHHHHHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQL------YMVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri------~~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
|+|+|+||+||+++|+|||||||++|.|..||. +++++|++|++++++.++.+++.+.
T Consensus 221 E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 221 EDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp HCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999985 9999999999999999998876543
No 33
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.11 E-value=5.8e-11 Score=121.40 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=56.8
Q ss_pred CCChhhhhhheeeeeeccCcCCcccCCcc-------cchhHHHhHHHHHHhhccchHHHHHHHHHHHHh
Q psy8620 42 HLNLFQATYYVVVTFSTVGYGDFVPDIWP-------SQLYMVIMICVALIVLPTQFEQLAFTWMERQKL 103 (695)
Q Consensus 42 ~~~~~da~Yf~vvT~sTVGYGDi~P~t~~-------gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~ 103 (695)
+|+|+||+||+++|+|||||||++|.|.. ||++++++|++|++++++.++.+++....++-.
T Consensus 199 ~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~ 267 (280)
T 3ukm_A 199 DWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFR 267 (280)
T ss_dssp SCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999986 599999999999999999999999887776543
No 34
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=99.09 E-value=5.5e-10 Score=123.84 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=139.8
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCC-ccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPME-LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..+.|+|+|.|..+..+++.|.+. ..+.++...+ ..+.+...+ .+..+++||+++++.|++++++
T Consensus 234 ~~~~v~I~GgG~ig~~lA~~L~~~--------~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~~~L~ee~i~ 299 (461)
T 4g65_A 234 PYRRIMIVGGGNIGASLAKRLEQT--------YSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQELLTEENID 299 (461)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTTT--------SEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCHHHHHHTTGG
T ss_pred cccEEEEEcchHHHHHHHHHhhhc--------CceEEEecCHHHHHHHHHHC------CCceEEeccccchhhHhhcCch
Confidence 457899999999999998887542 3566654332 222232221 3688999999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhcc--CCCeEEehHHHHHHHHHHHhcCCCh
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVK--FAEFIVCEDELKYALLANNCTCPGA 270 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~~--gad~VI~~~el~~~lLa~s~~~PGl 270 (695)
+|++++.+ +++|..|++.++.+|++..+ ++++++.++++...+. |.|.+|+|..+.+..+.+.++.|++
T Consensus 300 ~~D~~ia~--------T~~De~Ni~~~llAk~~gv~-kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i~~~~v 370 (461)
T 4g65_A 300 QVDVFIAL--------TNEDETNIMSAMLAKRMGAK-KVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHVRRADI 370 (461)
T ss_dssp GCSEEEEC--------CSCHHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHHHHTTC
T ss_pred hhcEEEEc--------ccCcHHHHHHHHHHHHcCCc-cccccccccchhhhhhccccceeeCHHHHHHHHHHHHhhcccc
Confidence 99998874 46899999999999999765 8999999998875553 7999999999998887777765554
Q ss_pred HHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCccc
Q psy8620 271 STLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFF 350 (695)
Q Consensus 271 ~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~ 350 (695)
..+.+ |.. ...|+.-+......-.
T Consensus 371 ~~v~~-l~~-------------------------------------------------------g~ae~iE~~~~~~~~~ 394 (461)
T 4g65_A 371 VNVSS-LRR-------------------------------------------------------GAAEAIEAVAHGDESN 394 (461)
T ss_dssp CCEEE-CGG-------------------------------------------------------GSCEEEEEECCSCGGG
T ss_pred ceEEE-ecC-------------------------------------------------------CceEEEEEEEecCCCC
Confidence 32111 000 1223433333211113
Q ss_pred ccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeee
Q psy8620 351 GEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEI 397 (695)
Q Consensus 351 ~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~ 397 (695)
+++.|+++.|+ .+. .|+.+.+ |++++ |.+++++++ +|...+
T Consensus 395 S~~vGk~l~dl--~lp--~g~~I~aI~R~~~~ii-P~gdt~i~~-gD~viv 439 (461)
T 4g65_A 395 SKVVGRAVGDI--KLP--PGTTIGAIVRGEEVLI-AHDRTVIEQ-DDHVVM 439 (461)
T ss_dssp CSSTTSBGGGS--CCC--TTEEEEEEEETTEEEE-CCTTCBCCT-TCEEEE
T ss_pred CccCCcCHHHC--CCC--CCcEEEEEEECCEEEc-CCCCCEECC-CCEEEE
Confidence 56899999998 443 3766654 66655 999999984 665543
No 35
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.03 E-value=2.8e-10 Score=122.18 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=55.3
Q ss_pred CChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 43 ~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
.++.+|+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.++.
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 218 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV 218 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999998876653
No 36
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.00 E-value=2.6e-10 Score=119.76 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhc----cC-------------CCCCChhhhhhheeeeeeccCc
Q psy8620 2 FQNDLHRAMQKSQSALSQQLMILSAT---FVCGIQHFQR----AG-------------HRHLNLFQATYYVVVTFSTVGY 61 (695)
Q Consensus 2 ~~~~~~~~~~r~~~~l~~~l~il~~~---l~~g~~~~~~----~~-------------~~~~~~~da~Yf~vvT~sTVGY 61 (695)
|+.|++.++-..+++-+.+++++..+ +++|+.+|.- +. ....+|.+||||+++|+|||||
T Consensus 29 ~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGY 108 (340)
T 3sya_A 29 YLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGY 108 (340)
T ss_dssp HHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCC
T ss_pred HHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecC
Confidence 67899988866666554444433222 2444444321 11 1245899999999999999999
Q ss_pred CCcccC--CcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEcc
Q psy8620 62 GDFVPD--IWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCST 123 (695)
Q Consensus 62 GDi~P~--t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~ 123 (695)
||++|. ++.|++++.+.+++|+++++..++.+...+...+++. ....-++|.|||..
T Consensus 109 Gd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra-----~ti~FS~~AVI~~~ 167 (340)
T 3sya_A 109 GYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRA-----ETLVFSTHAVISMR 167 (340)
T ss_dssp SSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGG-----GGEEECSCEEEEEE
T ss_pred CCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcC-----ceEEecceEEEecc
Confidence 999996 7899999999999999999999987765543322211 11346789999875
No 37
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.97 E-value=1.6e-10 Score=119.92 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHH
Q psy8620 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMER 100 (695)
Q Consensus 41 ~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~ 100 (695)
++|+|.||+||+++|+|||||||++|.|..||+++++++++|+.++...++.+++.+.+.
T Consensus 112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999999999999999999998877553
No 38
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.92 E-value=3.2e-10 Score=115.95 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCCCChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 40 HRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 40 ~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
.+.|+|.||+||+++|+|||||||++|.|..||+++++++++|+.++...++.+.+.+....
T Consensus 89 ~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 150 (280)
T 3ukm_A 89 NWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV 150 (280)
T ss_dssp -CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999998887665543
No 39
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.89 E-value=4.7e-10 Score=117.95 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh----ccC--------------CCCCChhhhhhheeeeeeccC
Q psy8620 2 FQNDLHRAMQKSQSALSQQLMILSA---TFVCGIQHFQ----RAG--------------HRHLNLFQATYYVVVTFSTVG 60 (695)
Q Consensus 2 ~~~~~~~~~~r~~~~l~~~l~il~~---~l~~g~~~~~----~~~--------------~~~~~~~da~Yf~vvT~sTVG 60 (695)
|+.|++.++-..++..+.+++++.. -+++|+.++. .+. ....+|.+||||+++|+||||
T Consensus 31 ~l~Dif~tlv~l~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvG 110 (343)
T 3spc_A 31 YIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIG 110 (343)
T ss_dssp ---CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHeeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeec
Confidence 7889998887666554444443222 2344544431 110 124689999999999999999
Q ss_pred cCCccc--CCcccchhHHHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEcc
Q psy8620 61 YGDFVP--DIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCST 123 (695)
Q Consensus 61 YGDi~P--~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~ 123 (695)
|||++| .++.|++++.+.+++|+++++..++.+..-+...++ + +....-++|.|||..
T Consensus 111 YGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~---r--~~ti~FS~~AVI~~~ 170 (343)
T 3spc_A 111 YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK---R--AQTLLFSHNAVVAMR 170 (343)
T ss_dssp CSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC---C--CCCEEECSCEEEEEE
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh---h--cCcEEeccceEEecC
Confidence 999997 489999999999999999999988877544322111 1 011335678888864
No 40
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.81 E-value=2.9e-08 Score=95.79 Aligned_cols=131 Identities=7% Similarity=-0.104 Sum_probs=103.6
Q ss_pred CCceEEEEccCccHHHHHHHHHHH-hcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhc-cc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEF-YAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARA-RM 191 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~-~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra-~i 191 (695)
.++||+|||+|..+..+...|.+. . .+|++++..+ +..+.+. ..++.++.||+++++.|+++ ++
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g-------~~V~vid~~~--~~~~~~~-----~~g~~~~~gd~~~~~~l~~~~~~ 103 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYG-------KISLGIEIRE--EAAQQHR-----SEGRNVISGDATDPDFWERILDT 103 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHC-------SCEEEEESCH--HHHHHHH-----HTTCCEEECCTTCHHHHHTBCSC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccC-------CeEEEEECCH--HHHHHHH-----HCCCCEEEcCCCCHHHHHhccCC
Confidence 467999999999999999999875 3 2577776443 2233221 23677899999999999999 99
Q ss_pred ccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhc
Q psy8620 192 NEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCT 266 (695)
Q Consensus 192 ~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~ 266 (695)
+.|+.+|+.+ .+|..+...+..+|..+|..+|++...++++...+ .|++.|+++....+..|++.+.
T Consensus 104 ~~ad~vi~~~--------~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~ 172 (183)
T 3c85_A 104 GHVKLVLLAM--------PHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVC 172 (183)
T ss_dssp CCCCEEEECC--------SSHHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeC--------CChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEchHHHHHHHHHHHHH
Confidence 9999988843 45778888888999999999999999888775544 4899999999999988887654
No 41
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=98.64 E-value=3.9e-07 Score=83.09 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=99.3
Q ss_pred ceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 116 ~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.||+|+|.|..+..+...|.+.. .+|++++..+ +..+.+.+ ..++.++.||+.+.+.|++++++.|+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g-------~~v~~~d~~~--~~~~~~~~----~~~~~~~~~d~~~~~~l~~~~~~~~d 71 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKG-------HDIVLIDIDK--DICKKASA----EIDALVINGDCTKIKTLEDAGIEDAD 71 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCH--HHHHHHHH----HCSSEEEESCTTSHHHHHHTTTTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCH--HHHHHHHH----hcCcEEEEcCCCCHHHHHHcCcccCC
Confidence 48999999999999999888742 3677776432 22332211 12566889999999999999999999
Q ss_pred EEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCCh
Q psy8620 196 ACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGA 270 (695)
Q Consensus 196 aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl 270 (695)
.+++.+ .+|..+......++.+.+. ++++...++++...+ .|++.|++|+.+.+..+++.+..|++
T Consensus 72 ~vi~~~--------~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~g~~~v~~p~~~~~~~~~~~~~~p~~ 139 (140)
T 1lss_A 72 MYIAVT--------GKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLGVDVVVSPELIAANYIEKLIERPGI 139 (140)
T ss_dssp EEEECC--------SCHHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHTTCSEEECHHHHHHHHHHHHHTC---
T ss_pred EEEEee--------CCchHHHHHHHHHHHcCCC-EEEEEecCHhHHHHHHHcCCCEEECHHHHHHHHHHHHhccCCC
Confidence 988854 3456667777778888775 899988888775443 48999999999999999999999975
No 42
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=98.53 E-value=2.3e-07 Score=84.97 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=101.7
Q ss_pred ceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 116 ~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
+||+|+|.|..+..+...|.+.. .+|++++..+ +..+. ++ ..+..++.||..+.++|++++++.++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g-------~~v~~~d~~~--~~~~~-~~----~~~~~~~~~d~~~~~~l~~~~~~~~d 72 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMG-------HEVLAVDINE--EKVNA-YA----SYATHAVIANATEENELLSLGIRNFE 72 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-------CCCEEEESCH--HHHHT-TT----TTCSEEEECCTTCHHHHHTTTGGGCS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCH--HHHHH-HH----HhCCEEEEeCCCCHHHHHhcCCCCCC
Confidence 58999999999999998888742 2566665432 22222 11 22456789999999999999999999
Q ss_pred EEEEeccCCCCCCccch-HHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCChH
Q psy8620 196 ACFVLAARNYSDKTAAD-EHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPGAS 271 (695)
Q Consensus 196 aviIla~~~~~d~~~~D-~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PGl~ 271 (695)
.+++.+. +| ..++..+..+++.+++ ++++...++.+...+ .|++.|+++....+..|++.+..|++.
T Consensus 73 ~vi~~~~--------~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~g~~~vi~p~~~~~~~l~~~~~~~~~~ 142 (144)
T 2hmt_A 73 YVIVAIG--------ANIQASTLTTLLLKELDIP-NIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSDENVL 142 (144)
T ss_dssp EEEECCC--------SCHHHHHHHHHHHHHTTCS-EEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCC--------CchHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHcCCCEEECccHHHHHHHHHHHhhcccc
Confidence 8887442 33 5677888889999887 899999888775443 489999999999999999998888754
No 43
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=98.50 E-value=9e-07 Score=82.89 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred cCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 113 QSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
...++|+|+|.|..+..++..|.+.. .+|++++..+ +..+. ++. ..+..++.|++.+.+.|++++++
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g-------~~V~vid~~~--~~~~~-~~~---~~g~~~~~~d~~~~~~l~~~~~~ 83 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG-------HSVVVVDKNE--YAFHR-LNS---EFSGFTVVGDAAEFETLKECGME 83 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCG--GGGGG-SCT---TCCSEEEESCTTSHHHHHTTTGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCH--HHHHH-HHh---cCCCcEEEecCCCHHHHHHcCcc
Confidence 45689999999999999999998742 3677776543 11221 110 23566788999999999999999
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhc
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCT 266 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~ 266 (695)
.|+.||+.. .+|..+...+..++.++|..++++...++++...+ .|++ |++|+++.+..|++.+.
T Consensus 84 ~ad~Vi~~~--------~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~~~~a~~l~~~l~ 150 (155)
T 2g1u_A 84 KADMVFAFT--------NDDSTNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIK-TICPAVLMIEKVKEFII 150 (155)
T ss_dssp GCSEEEECS--------SCHHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE-EECHHHHHHHHHHHHHH
T ss_pred cCCEEEEEe--------CCcHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCc-EEcHHHHHHHHHHHHHh
Confidence 999988843 45777888888888889999999999998886544 4888 99999999998887653
No 44
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.27 E-value=3.5e-06 Score=89.38 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=109.5
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHHHhhhh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSK 584 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~ 584 (695)
+.+.|++||+..|+.|++..++ |..++++++.+++++|++++++...++.|.+.++..++|..
T Consensus 166 ~~~~L~~a~i~~a~~vi~~~~~-----------d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~~G~d~v------ 228 (336)
T 1lnq_A 166 RVSDLEKANVRGARAVIVDLES-----------DSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQV------ 228 (336)
T ss_dssp SHHHHHHTCSTTEEEEEECCSS-----------HHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHHTTCSEE------
T ss_pred CHHHHHhcChhhccEEEEcCCc-----------cHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEE------
Confidence 7888999999999999998766 88999999999999999999999999999877764333321
Q ss_pred hhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCCC-ccCCCcHH
Q psy8620 585 MEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKD-DMWIRTYG 663 (695)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~~-~~~~~tf~ 663 (695)
+.........|++...+|.+.++++.+++.+ +...+..+++++. ++.|++.+
T Consensus 229 ------------------------i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~l~e~~v~~~s~~~Gk~l~ 281 (336)
T 1lnq_A 229 ------------------------ISPFVISGRLMSRSIDDGYEAMFVQDVLAEE---STRRMVEVPIPEGSKLEGVSVL 281 (336)
T ss_dssp ------------------------ECHHHHHHHHHHHTSSCSHHHHHHHHHTSSC---SSCEEEEEECCSSCSSTTCBHH
T ss_pred ------------------------EChhHhHHHHHHHHHhCccHHHHHHHHHcCc---CCceEEEEEeCCCCCcCCCCHH
Confidence 4455677789999999999999996666542 1235556677653 57899999
Q ss_pred HHHHHHHhccCceeeEEEeecCCCCCCCCC
Q psy8620 664 RLYQKLCSTTCEIPIGIYRTQDMSSIESPQ 693 (695)
Q Consensus 664 ~lf~~ll~~~~~i~iGlyR~~~~~~~~~~~ 693 (695)
++ .+-.+++.+.+|+.|......+|+++
T Consensus 282 el--~l~~~~~~~ii~i~r~~~~~~~P~~~ 309 (336)
T 1lnq_A 282 DA--DIHDVTGVIIIGVGRGDELIIDPPRD 309 (336)
T ss_dssp HH--CHHHHHCCEEEEEECSSCEESSCCTT
T ss_pred Hc--ccccccCeEEEEEEECCEEEECcCCC
Confidence 98 33345689999999975544445543
No 45
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.08 E-value=1.3e-06 Score=90.58 Aligned_cols=98 Identities=8% Similarity=0.106 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHhhccCC-CCCChhhhhhheeeeeeccCcC-Ccc-cCCccc----c
Q psy8620 4 NDLHRAMQKSQSALSQQLMILSAT-F---VCGIQHFQRAGH-RHLNLFQATYYVVVTFSTVGYG-DFV-PDIWPS----Q 72 (695)
Q Consensus 4 ~~~~~~~~r~~~~l~~~l~il~~~-l---~~g~~~~~~~~~-~~~~~~da~Yf~vvT~sTVGYG-Di~-P~t~~g----r 72 (695)
+.+.+++.+..+.+...++++++. + +.|...+....+ ...++.+|+||+++|+||+||| |+. |.+..| +
T Consensus 135 ~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~ 214 (285)
T 3rvy_A 135 RKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWV 214 (285)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHh
Confidence 344555555555544444333222 2 234444432222 2678999999999999999999 996 876655 7
Q ss_pred hhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 73 LYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 73 i~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
.++.+++++|++++...++.+.+.+.+..
T Consensus 215 ~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 215 FFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999988776543
No 46
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=98.07 E-value=1.7e-05 Score=79.34 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=104.6
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHHHhhhh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSK 584 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~ 584 (695)
+.+.|++|++..|+.||+...+ |..++++...+++++|++++|+...++.+.+.++..++|.
T Consensus 60 ~~~~l~~a~i~~ad~vi~~~~~-----------d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~~~------- 121 (234)
T 2aef_A 60 RVSDLEKANVRGARAVIVDLES-----------DSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQ------- 121 (234)
T ss_dssp CHHHHHHTTCTTCSEEEECCSC-----------HHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHHHTCSE-------
T ss_pred CHHHHHhcCcchhcEEEEcCCC-----------cHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHHCCCCE-------
Confidence 6778999999999999988665 7889999999999999999999999999877765333332
Q ss_pred hhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCCC-ccCCCcHH
Q psy8620 585 MEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKD-DMWIRTYG 663 (695)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~~-~~~~~tf~ 663 (695)
.+.........|++...+|.+.++++.+++.+. ...+..+.+++. .+.+++.+
T Consensus 122 -----------------------vi~p~~~~a~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~V~~~s~~~Gk~l~ 175 (234)
T 2aef_A 122 -----------------------VISPFVISGRLMSRSIDDGYEAMFVQDVLAEES---TRRMVEVPIPEGSKLEGVSVL 175 (234)
T ss_dssp -----------------------EECHHHHHHHHHHHTSSCSHHHHHHHHHHC------CCEEEEEECCTTBTTTTCBHH
T ss_pred -----------------------EECHHHHHHHHHHHHHcCccHHHHHHHHhcCCC---CceEEEEEECCCCccCCCCHH
Confidence 133456677788999999999999855554321 224556667653 57899999
Q ss_pred HHHHHHHhccCceeeEEEeecCCCCCCCC
Q psy8620 664 RLYQKLCSTTCEIPIGIYRTQDMSSIESP 692 (695)
Q Consensus 664 ~lf~~ll~~~~~i~iGlyR~~~~~~~~~~ 692 (695)
++ .+-..++.+.+|++|......+|.+
T Consensus 176 el--~~~~~~~~~vi~i~R~~~~~~~p~~ 202 (234)
T 2aef_A 176 DA--DIHDVTGVIIIGVGRGDELIIDPPR 202 (234)
T ss_dssp HH--CHHHHHCCEEEEEEETTEEEESCCT
T ss_pred Hh--hhhhhcCeEEEEEEECCeEEeCCCC
Confidence 98 3334568999999997544434444
No 47
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=96.90 E-value=0.00065 Score=66.94 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=94.9
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHHHhhhh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSK 584 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~ 584 (695)
+.+.|++|++..||.|++..++ |..++++....++.+|..++|+...++.+.+.++..++|..
T Consensus 54 ~~~~l~~a~i~~ad~vi~~~~~-----------d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~v------ 116 (218)
T 3l4b_C 54 HKEILRDAEVSKNDVVVILTPR-----------DEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTV------ 116 (218)
T ss_dssp SHHHHHHHTCCTTCEEEECCSC-----------HHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEEC------
T ss_pred CHHHHHhcCcccCCEEEEecCC-----------cHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEE------
Confidence 7778999999999999888666 77888888888888999999999999988877764444321
Q ss_pred hhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCC-CccCCCcHH
Q psy8620 585 MEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITK-DDMWIRTYG 663 (695)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~-~~~~~~tf~ 663 (695)
+.........+++....|.+.+++. . ..+ ..+..+++++ ..+.|+|.+
T Consensus 117 ------------------------i~p~~~~~~~l~~~~~~~~~~~~~~----~--~~~-~~~~e~~v~~~s~~~gk~l~ 165 (218)
T 3l4b_C 117 ------------------------LNLTTLITNTVEALIFPDEFSSIIP----L--EQG-IEFLSVNVEEDSPVVGKKLK 165 (218)
T ss_dssp ------------------------CCHHHHHHHHHHHHHCTTSCEECSC----C--STT-EEEEEEECCTTCSSTTCBTT
T ss_pred ------------------------ECHHHHHHHHHHHHhccCCceEEEE----e--CCC-cEEEEEEECCCCcccCCCHH
Confidence 3444555556666666665443321 1 112 3555666764 457799999
Q ss_pred HHHHHHHhccCceeeEEEeecCCCCCCCCC
Q psy8620 664 RLYQKLCSTTCEIPIGIYRTQDMSSIESPQ 693 (695)
Q Consensus 664 ~lf~~ll~~~~~i~iGlyR~~~~~~~~~~~ 693 (695)
++- +.+ +.+.+|+.|..... .|.++
T Consensus 166 el~---~~~-~~~i~~i~R~~~~~-~p~~~ 190 (218)
T 3l4b_C 166 DLP---LPR-DSIIAAIVRGGVLV-VPRGD 190 (218)
T ss_dssp TSC---CCT-TEEEEEEEESSCEE-CCCTT
T ss_pred HCC---CCC-CcEEEEEEECCEEE-cCCCC
Confidence 983 233 89999999976554 35443
No 48
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=94.66 E-value=0.053 Score=53.58 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccC-CCCCChhhhhhheeeeeeccCcCCccc----CCcccchh
Q psy8620 4 NDLHRAMQKSQSALSQQLMILSATF----VCGIQHFQRAG-HRHLNLFQATYYVVVTFSTVGYGDFVP----DIWPSQLY 74 (695)
Q Consensus 4 ~~~~~~~~r~~~~l~~~l~il~~~l----~~g~~~~~~~~-~~~~~~~da~Yf~vvT~sTVGYGDi~P----~t~~gri~ 74 (695)
+.+.+++.+..+++....++++..+ +.|+..+.... ....++.+|+|+.+.++||.|++|+.. .++.+.++
T Consensus 120 ~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~ 199 (229)
T 4dxw_A 120 KQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVY 199 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHH
Confidence 4455566666666655554433322 23444443322 246789999999999999999998732 23344444
Q ss_pred -HHHhHHHHHHhhccchHHHHHHHH
Q psy8620 75 -MVIMICVALIVLPTQFEQLAFTWM 98 (695)
Q Consensus 75 -~i~~i~~gi~~~~~~i~~l~~~~~ 98 (695)
+.+.++++++++-..++.+.+.+.
T Consensus 200 f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 200 FFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666665543
No 49
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=93.43 E-value=0.066 Score=52.07 Aligned_cols=57 Identities=11% Similarity=-0.071 Sum_probs=43.1
Q ss_pred CeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeecc
Q psy8620 337 NEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIPI 399 (695)
Q Consensus 337 ~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~~ 399 (695)
.++..+.+++ .+.+.|+++.++ .+++++|+.+++ |+.+.+|.+++++. .+|.+.++.
T Consensus 121 ~~~~e~~v~~---~s~~~GktL~el--~l~~~~gv~IvaI~R~g~~i~~P~~dt~L~-~GD~Liv~g 181 (205)
T 1vct_A 121 EIIGKIQVYP---ESVIVGKTLGEL--DLATNTGVWIIAVRRGKRWIFGPNENFKIR-AGDVLIGRG 181 (205)
T ss_dssp SEEEEEECCT---TCTTTTCBHHHH--CHHHHHSCEEEEEEETTEEEESCCTTCBCC-TTCEEEEEE
T ss_pred CeEEEEEECC---CCccCCCCHHHc--CCCccCCEEEEEEEECCEEEeCCCCCCEEC-CCCEEEEEE
Confidence 3445555544 357999999998 777788998886 67778999999999 578775543
No 50
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=93.24 E-value=0.096 Score=47.98 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=50.8
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccc
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQ 575 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~ 575 (695)
+.+.|.++++..|+.||+..++ |..++.+.+..++++|..++|+...++.+.+.++..+.
T Consensus 60 ~~~~l~~a~i~~ad~vi~~~~~-----------d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~~~G~ 119 (153)
T 1id1_A 60 DSSVLKKAGIDRCRAILALSDN-----------DADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHP 119 (153)
T ss_dssp SHHHHHHHTTTTCSEEEECSSC-----------HHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCC
T ss_pred CHHHHHHcChhhCCEEEEecCC-----------hHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCC
Confidence 6777999999999998888766 78889999999999999999999999988776654333
No 51
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=92.45 E-value=0.14 Score=46.13 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=51.5
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccch
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQD 576 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~ 576 (695)
+.+.|+++++..|+.+|+...+ |..++.++..+++++|.+++|+...++.|.+.++..+.|
T Consensus 60 ~~~~l~~a~i~~ad~vi~~~~~-----------~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~G~d 120 (140)
T 3fwz_A 60 NEEIMQLAHLECAKWLILTIPN-----------GYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGAN 120 (140)
T ss_dssp SHHHHHHTTGGGCSEEEECCSC-----------HHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCS
T ss_pred CHHHHHhcCcccCCEEEEECCC-----------hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCC
Confidence 6677999999999999888666 677887888889999999999999999998877755444
No 52
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=90.89 E-value=0.18 Score=59.31 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=46.2
Q ss_pred ChhhhhhheeeeeeccCcCCcccCCcccchhHHHhHHHHHHhhccchHHHHHHHHHHH
Q psy8620 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101 (695)
Q Consensus 44 ~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~i~~i~~gi~~~~~~i~~l~~~~~~~~ 101 (695)
++.+++|+++.++...| ++..|.+..+|++.+++.++++++.....+.|++.+...+
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 619 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVER 619 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 47799999999998888 7889999999999999999999999999999998877654
No 53
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=90.70 E-value=0.14 Score=55.38 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchh
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDK 577 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d 577 (695)
+.+.|++||+..|+.||+..++ |..++.++..+++++|+++||+...++.+.+.+...++|.
T Consensus 57 ~~~~L~~agi~~A~~viv~~~~-----------~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~~Gad~ 118 (413)
T 3l9w_A 57 RMDLLESAGAAKAEVLINAIDD-----------PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEK 118 (413)
T ss_dssp CHHHHHHTTTTTCSEEEECCSS-----------HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHTTCSS
T ss_pred CHHHHHhcCCCccCEEEECCCC-----------hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCE
Confidence 7778999999999999988766 8889999999999999999999999999988887666553
No 54
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=84.34 E-value=1.4 Score=39.27 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=47.9
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccc
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQ 575 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~ 575 (695)
+.+.|.++++..||.||+...+ |..++.+....++.+ ..++|+-..++.+.+.++..+.
T Consensus 59 ~~~~l~~~~~~~~d~vi~~~~~-----------~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l~~~G~ 117 (141)
T 3llv_A 59 DESFYRSLDLEGVSAVLITGSD-----------DEFNLKILKALRSVS-DVYAIVRVSSPKKKEEFEEAGA 117 (141)
T ss_dssp CHHHHHHSCCTTCSEEEECCSC-----------HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHHHHTTC
T ss_pred CHHHHHhCCcccCCEEEEecCC-----------HHHHHHHHHHHHHhC-CceEEEEEcChhHHHHHHHcCC
Confidence 6777999999999988887654 677888888888888 8999999888888777664443
No 55
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=81.40 E-value=1.4 Score=35.87 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=40.0
Q ss_pred cCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec----ceEEEecccceecccCCCeeeec
Q psy8620 335 SGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK----DDMWIRTYGRLYQKLCSTTCEIP 398 (695)
Q Consensus 335 ~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig----~~i~lNP~~~~i~~~~~~~~~~~ 398 (695)
.+.+++.+.+++ .+.+.|+++.|+ .+.+ |+.+++ ++.+ .|.+++++. .+|.+.++
T Consensus 12 ~~~~l~e~~v~~---~s~~~Gk~l~el--~~~~--~~~i~~I~R~~~~~-~p~~~~~l~-~GD~l~v~ 70 (86)
T 3jxo_A 12 QGIEFLSVNVEE---DSPVVGKKLKDL--PLPR--DSIIAAIVRGGVLV-VPRGDTEIL-SGDKLYVI 70 (86)
T ss_dssp TTEEEEEEECCT---TCTTTTCBGGGS--CCCS--SEEEEEEEETTEEE-CCCTTCBCC-TTCEEEEE
T ss_pred CCcEEEEEEECC---CCccccCCHHHC--CCCC--CCEEEEEEECCEEE-CCCCCCEEC-CCCEEEEE
Confidence 346788888875 357999999998 4442 777765 5554 599999998 57777543
No 56
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=71.62 E-value=8 Score=38.97 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=63.3
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc---HHHHHHhc---------------CCcc---ccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD---TTMRMILQ---------------VPIW---AQR 172 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~---~~l~~~l~---------------~p~~---~~~ 172 (695)
..++|+|+|.|..+...+..|.+.. ..|+|+++...+ +.+..+.. ++.| ..+
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~G-------a~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 84 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTG-------CKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNE 84 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT-------CEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCC
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCC-------CEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCC
Confidence 3568999999999988888887753 367777754321 12222210 0111 235
Q ss_pred e-EEEEcCCCChHhHh---hcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhh-CCCccEEEEEeCccch
Q psy8620 173 V-IYIQGSCLKDGDLA---RARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDF-APDVPQYVQIFRPENK 241 (695)
Q Consensus 173 v-~~i~Gd~~~~~dL~---ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~-~p~i~Iiv~i~~~~~~ 241 (695)
+ .++.|.. .+++|. + ++.|+.||+ .++++..|..++..+|+. ..+++ +..+.+++..
T Consensus 85 i~~~i~~~~-~~~dL~~l~~--~~~adlVia--------at~d~~~n~~I~~~Ar~~f~~~i~-VNvvd~pel~ 146 (274)
T 1kyq_A 85 IYEYIRSDF-KDEYLDLENE--NDAWYIIMT--------CIPDHPESARIYHLCKERFGKQQL-VNVADKPDLC 146 (274)
T ss_dssp CSEEECSSC-CGGGGCCSST--TCCEEEEEE--------CCSCHHHHHHHHHHHHHHHCTTSE-EEETTCGGGB
T ss_pred eeEEEcCCC-CHHHHhhccc--CCCeEEEEE--------cCCChHHHHHHHHHHHHhcCCCcE-EEECCCcccC
Confidence 5 6777754 566664 3 457776665 234566788888888875 33332 3344555543
No 57
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=71.15 E-value=16 Score=30.46 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=50.8
Q ss_pred CceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 115 ~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
...|+|+|.|..+..++..|.+.. ...|++.+..+ +..+.+. ..++.++.+|..+.++++++ ++.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g------~~~v~~~~r~~--~~~~~~~-----~~~~~~~~~d~~~~~~~~~~-~~~~ 70 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS------NYSVTVADHDL--AALAVLN-----RMGVATKQVDAKDEAGLAKA-LGGF 70 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS------SEEEEEEESCH--HHHHHHH-----TTTCEEEECCTTCHHHHHHH-TTTC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC------CceEEEEeCCH--HHHHHHH-----hCCCcEEEecCCCHHHHHHH-HcCC
Confidence 357889998888999988887631 13666666433 2233221 24677899999999888876 6788
Q ss_pred cEEEEec
Q psy8620 195 EACFVLA 201 (695)
Q Consensus 195 ~aviIla 201 (695)
+.||..+
T Consensus 71 d~vi~~~ 77 (118)
T 3ic5_A 71 DAVISAA 77 (118)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 8877755
No 58
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=67.79 E-value=14 Score=35.87 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=56.9
Q ss_pred cCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 113 QSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 113 ~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
...++|+|+|.|..+...+..|.+.. ..|+|+++.. .++++.+.+ ..++.++.+.. .+++| +
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~G-------A~VtVvap~~-~~~l~~l~~----~~~i~~i~~~~-~~~dL-----~ 90 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEG-------AAITVVAPTV-SAEINEWEA----KGQLRVKRKKV-GEEDL-----L 90 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGC-------CCEEEECSSC-CHHHHHHHH----TTSCEEECSCC-CGGGS-----S
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEECCCC-CHHHHHHHH----cCCcEEEECCC-CHhHh-----C
Confidence 34678899999888888888887653 3677777643 345655543 23577776654 35555 4
Q ss_pred cccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccch
Q psy8620 193 EAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENK 241 (695)
Q Consensus 193 ~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~ 241 (695)
.|+.||+ +++++..|-.+...++ .+++ |..+.+|+.-
T Consensus 91 ~adLVIa--------AT~d~~~N~~I~~~ak---~gi~-VNvvD~p~~~ 127 (223)
T 3dfz_A 91 NVFFIVV--------ATNDQAVNKFVKQHIK---NDQL-VNMASSFSDG 127 (223)
T ss_dssp SCSEEEE--------CCCCTHHHHHHHHHSC---TTCE-EEC-----CC
T ss_pred CCCEEEE--------CCCCHHHHHHHHHHHh---CCCE-EEEeCCcccC
Confidence 5666655 2345566666665555 2333 3345555543
No 59
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=65.59 E-value=3.7 Score=38.25 Aligned_cols=55 Identities=7% Similarity=-0.097 Sum_probs=41.3
Q ss_pred ChhHHHHh-cccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeeccccccccc
Q psy8620 505 SLDDLLRA-GILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFM 570 (695)
Q Consensus 505 ~~~~L~~a-~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~ 570 (695)
+.+.|.++ ++..||.||+.... |..+..+...++..+|..++++...++.+.+.+
T Consensus 93 ~~~~l~~~~~~~~ad~vi~~~~~-----------~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l 148 (183)
T 3c85_A 93 DPDFWERILDTGHVKLVLLAMPH-----------HQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGL 148 (183)
T ss_dssp CHHHHHTBCSCCCCCEEEECCSS-----------HHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHH
T ss_pred CHHHHHhccCCCCCCEEEEeCCC-----------hHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 56678899 99999999887654 556666777888889999999876655554433
No 60
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=60.03 E-value=22 Score=35.41 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=51.0
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
++.|+|.|. |..|..+++.|.+.. ...|+++...+.......+ . ..++.++.||..+++.|+++ ++.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g------~~~V~~~~R~~~~~~~~~l-~----~~~~~~~~~D~~d~~~l~~~-~~~ 72 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDG------TFKVRVVTRNPRKKAAKEL-R----LQGAEVVQGDQDDQVIMELA-LNG 72 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC------SSEEEEEESCTTSHHHHHH-H----HTTCEEEECCTTCHHHHHHH-HTT
T ss_pred CCEEEEECCCchHHHHHHHHHHhcC------CceEEEEEcCCCCHHHHHH-H----HCCCEEEEecCCCHHHHHHH-Hhc
Confidence 357889886 567899988887642 1367766644322211211 1 24788999999999999876 567
Q ss_pred ccEEEEecc
Q psy8620 194 AEACFVLAA 202 (695)
Q Consensus 194 A~aviIla~ 202 (695)
++.||.++.
T Consensus 73 ~d~vi~~a~ 81 (299)
T 2wm3_A 73 AYATFIVTN 81 (299)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEeCC
Confidence 888887654
No 61
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=57.85 E-value=38 Score=33.77 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=51.7
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCc---cHHHHHH--hcCCccccceEEEEcCCCChHhHhhc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL---DTTMRMI--LQVPIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~---~~~l~~~--l~~p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
..|+|.| .|..|..+++.|.+.. ..|+++...+. .+..+.+ +. ..++.++.||..+++.|.++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~l~~~ 73 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG-------HPTYVLFRPEVVSNIDKVQMLLYFK----QLGAKLIEASLDDHQRLVDA 73 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-------CCEEEECCSCCSSCHHHHHHHHHHH----TTTCEEECCCSSCHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC-------CcEEEEECCCcccchhHHHHHHHHH----hCCeEEEeCCCCCHHHHHHH
Confidence 4588888 4678999998887742 35666664321 1112111 11 34789999999999999887
Q ss_pred ccccccEEEEeccC
Q psy8620 190 RMNEAEACFVLAAR 203 (695)
Q Consensus 190 ~i~~A~aviIla~~ 203 (695)
++.+++||-++..
T Consensus 74 -~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 74 -LKQVDVVISALAG 86 (313)
T ss_dssp -HTTCSEEEECCCC
T ss_pred -HhCCCEEEECCcc
Confidence 5679988887764
No 62
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=57.61 E-value=26 Score=35.23 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=51.2
Q ss_pred CCceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCc-c-HHHHHHhcCCccccceEEEEcCCCChHhHhhcc
Q psy8620 114 SEKHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL-D-TTMRMILQVPIWAQRVIYIQGSCLKDGDLARAR 190 (695)
Q Consensus 114 ~~~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~-~-~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~ 190 (695)
+.+.|+|.| .|..|..+++.|.+.. ..|+++...+. . ..+..+ . ..++.++.||..+++.|.++
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~l~R~~~~~~~~~~~l-~----~~~v~~v~~Dl~d~~~l~~a- 76 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLG-------HPTYVFTRPNSSKTTLLDEF-Q----SLGAIIVKGELDEHEKLVEL- 76 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTT-------CCEEEEECTTCSCHHHHHHH-H----HTTCEEEECCTTCHHHHHHH-
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCC-------CcEEEEECCCCchhhHHHHh-h----cCCCEEEEecCCCHHHHHHH-
Confidence 335688988 4678999999888742 25666654321 1 122211 1 34789999999999999887
Q ss_pred cccccEEEEecc
Q psy8620 191 MNEAEACFVLAA 202 (695)
Q Consensus 191 i~~A~aviIla~ 202 (695)
++.+++||-++.
T Consensus 77 ~~~~d~vi~~a~ 88 (318)
T 2r6j_A 77 MKKVDVVISALA 88 (318)
T ss_dssp HTTCSEEEECCC
T ss_pred HcCCCEEEECCc
Confidence 567898887664
No 63
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=54.85 E-value=60 Score=31.79 Aligned_cols=69 Identities=10% Similarity=-0.011 Sum_probs=47.7
Q ss_pred CceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 115 ~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
..+|+|.|.|..|..+++.|.+.. ..|+.+...+.. ...+. ..++.++.||..+.+ ++.+
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g-------~~V~~~~r~~~~--~~~~~-----~~~~~~~~~D~~d~~------~~~~ 64 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQG-------WRIIGTSRNPDQ--MEAIR-----ASGAEPLLWPGEEPS------LDGV 64 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGT-------CEEEEEESCGGG--HHHHH-----HTTEEEEESSSSCCC------CTTC
T ss_pred cCcEEEECCcHHHHHHHHHHHHCC-------CEEEEEEcChhh--hhhHh-----hCCCeEEEecccccc------cCCC
Confidence 357999998778999988887642 367777654322 22111 357899999998733 6788
Q ss_pred cEEEEeccC
Q psy8620 195 EACFVLAAR 203 (695)
Q Consensus 195 ~aviIla~~ 203 (695)
++||-++..
T Consensus 65 d~vi~~a~~ 73 (286)
T 3ius_A 65 THLLISTAP 73 (286)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCc
Confidence 988887764
No 64
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=53.97 E-value=20 Score=30.86 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=33.5
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeeccccccc
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMR 568 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~ 568 (695)
+.+.|.++++..||.|++..+. |.....+....+...+. ++|+...++.+.+
T Consensus 58 ~~~~l~~~~~~~~d~vi~~~~~-----------~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~ 109 (140)
T 1lss_A 58 KIKTLEDAGIEDADMYIAVTGK-----------EEVNLMSSLLAKSYGIN-KTIARISEIEYKD 109 (140)
T ss_dssp SHHHHHHTTTTTCSEEEECCSC-----------HHHHHHHHHHHHHTTCC-CEEEECSSTTHHH
T ss_pred CHHHHHHcCcccCCEEEEeeCC-----------chHHHHHHHHHHHcCCC-EEEEEecCHhHHH
Confidence 5666888999999998888544 33334444555555554 7887666555543
No 65
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=53.54 E-value=62 Score=30.30 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=49.0
Q ss_pred eEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCC-hHhHhhcccccc
Q psy8620 117 HVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLK-DGDLARARMNEA 194 (695)
Q Consensus 117 HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~-~~dL~ra~i~~A 194 (695)
+|+|.| .+..|..+++.|.+. +..|+++...+. . .. . ..++.++.||.++ .++++++ ++..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~-------g~~V~~~~R~~~-~-~~---~----~~~~~~~~~D~~d~~~~~~~~-~~~~ 64 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTT-------DYQIYAGARKVE-Q-VP---Q----YNNVKAVHFDVDWTPEEMAKQ-LHGM 64 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTS-------SCEEEEEESSGG-G-SC---C----CTTEEEEECCTTSCHHHHHTT-TTTC
T ss_pred eEEEECCCCHHHHHHHHHHHHC-------CCEEEEEECCcc-c-hh---h----cCCceEEEecccCCHHHHHHH-HcCC
Confidence 478888 456688887777652 246777764431 1 11 0 1589999999999 8888877 5689
Q ss_pred cEEEEeccCC
Q psy8620 195 EACFVLAARN 204 (695)
Q Consensus 195 ~aviIla~~~ 204 (695)
+.||-++...
T Consensus 65 d~vi~~ag~~ 74 (219)
T 3dqp_A 65 DAIINVSGSG 74 (219)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCcCC
Confidence 9888877643
No 66
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=52.81 E-value=63 Score=34.84 Aligned_cols=85 Identities=12% Similarity=0.004 Sum_probs=55.5
Q ss_pred CceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 115 ~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
.++|+|+|.|..+...++.|.+.. ..|+++++.. .+++..+.. ..++.++.|.. .+++|. .|
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~g-------a~V~vi~~~~-~~~~~~l~~----~~~i~~~~~~~-~~~~l~-----~~ 73 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAG-------ARLTVNALTF-IPQFTVWAN----EGMLTLVEGPF-DETLLD-----SC 73 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------BEEEEEESSC-CHHHHHHHT----TTSCEEEESSC-CGGGGT-----TC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCc-------CEEEEEcCCC-CHHHHHHHh----cCCEEEEECCC-CccccC-----Cc
Confidence 468899999999999988888753 3677777643 344554432 24678888765 455664 56
Q ss_pred cEEEEeccCCCCCCccchHHHHHHHHHHhhh
Q psy8620 195 EACFVLAARNYSDKTAADEHTILRSWAVKDF 225 (695)
Q Consensus 195 ~aviIla~~~~~d~~~~D~~~i~~~laik~~ 225 (695)
+.||+ + .+++..|......+|+.
T Consensus 74 ~lVi~-a-------t~~~~~n~~i~~~a~~~ 96 (457)
T 1pjq_A 74 WLAIA-A-------TDDDTVNQRVSDAAESR 96 (457)
T ss_dssp SEEEE-C-------CSCHHHHHHHHHHHHHT
T ss_pred cEEEE-c-------CCCHHHHHHHHHHHHHc
Confidence 66555 2 23444577777777775
No 67
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=52.06 E-value=20 Score=35.54 Aligned_cols=69 Identities=12% Similarity=-0.047 Sum_probs=50.8
Q ss_pred ceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 116 KHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 116 ~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.+|+|.|.|..|..+++.|.+.. ..|+++...+.. ...++.++.||..+.+.++++--.+++
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g-------~~V~~~~r~~~~-----------~~~~~~~~~~Dl~d~~~~~~~~~~~~d 65 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQG-------HEVTGLRRSAQP-----------MPAGVQTLIADVTRPDTLASIVHLRPE 65 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT-------CCEEEEECTTSC-----------CCTTCCEEECCTTCGGGCTTGGGGCCS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCccc-----------cccCCceEEccCCChHHHHHhhcCCCC
Confidence 46899998778999998888742 357776543321 135788999999999998886444589
Q ss_pred EEEEecc
Q psy8620 196 ACFVLAA 202 (695)
Q Consensus 196 aviIla~ 202 (695)
.||-++.
T Consensus 66 ~vih~a~ 72 (286)
T 3gpi_A 66 ILVYCVA 72 (286)
T ss_dssp EEEECHH
T ss_pred EEEEeCC
Confidence 8888764
No 68
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=51.59 E-value=47 Score=31.23 Aligned_cols=71 Identities=8% Similarity=0.055 Sum_probs=49.9
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
..|+|.|. |..|..+++.|.+.. ..|+++...+.. . +....++.++.||.++.++++++ ++.+
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~--~------~~~~~~~~~~~~Dl~d~~~~~~~-~~~~ 68 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG-------FEVTAVVRHPEK--I------KIENEHLKVKKADVSSLDEVCEV-CKGA 68 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT-------CEEEEECSCGGG--C------CCCCTTEEEECCCTTCHHHHHHH-HTTC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-------CEEEEEEcCccc--c------hhccCceEEEEecCCCHHHHHHH-hcCC
Confidence 46888884 566888888887632 367777654321 1 11236899999999999998876 5578
Q ss_pred cEEEEecc
Q psy8620 195 EACFVLAA 202 (695)
Q Consensus 195 ~aviIla~ 202 (695)
++||-++.
T Consensus 69 d~vi~~a~ 76 (227)
T 3dhn_A 69 DAVISAFN 76 (227)
T ss_dssp SEEEECCC
T ss_pred CEEEEeCc
Confidence 88887664
No 69
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=51.30 E-value=8.4 Score=33.60 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=38.3
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccc-hHHHHHHHHHHHhcCCCcEEEeeccccccccc
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLAD-CNTIVAVQTMFKFFPGIRTITELSQSSNMRFM 570 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D-~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~ 570 (695)
+.++|.++++..+|.|++.... | ..++.+.+.+++.++. ++|+-..++.+.+.+
T Consensus 59 ~~~~l~~~~~~~~d~vi~~~~~-----------~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l 113 (144)
T 2hmt_A 59 EENELLSLGIRNFEYVIVAIGA-----------NIQASTLTTLLLKELDIP-NIWVKAQNYYHHKVL 113 (144)
T ss_dssp CHHHHHTTTGGGCSEEEECCCS-----------CHHHHHHHHHHHHHTTCS-EEEEECCSHHHHHHH
T ss_pred CHHHHHhcCCCCCCEEEECCCC-----------chHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHH
Confidence 5677888899999988877554 3 3455666777777876 888877666654444
No 70
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=50.04 E-value=27 Score=31.16 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=41.4
Q ss_pred ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccc
Q psy8620 505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQ 571 (695)
Q Consensus 505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~ 571 (695)
+.+.|.++++..||.|++.... |.....+...++.++|...+++...++.+.+.++
T Consensus 73 ~~~~l~~~~~~~ad~Vi~~~~~-----------~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~ 128 (155)
T 2g1u_A 73 EFETLKECGMEKADMVFAFTND-----------DSTNFFISMNARYMFNVENVIARVYDPEKIKIFE 128 (155)
T ss_dssp SHHHHHTTTGGGCSEEEECSSC-----------HHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHH
T ss_pred CHHHHHHcCcccCCEEEEEeCC-----------cHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 4566888899999988887554 4455555566666789999999888887765554
No 71
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=48.02 E-value=43 Score=33.58 Aligned_cols=77 Identities=6% Similarity=0.108 Sum_probs=49.9
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCC-c---cHHHHHHhcCCccccceEEEEcCCCChHhHhhcc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPME-L---DTTMRMILQVPIWAQRVIYIQGSCLKDGDLARAR 190 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~---~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~ 190 (695)
..|+|.| .|..|..+++.|.+.. ..|+++...+ . .+..+.+.. ....++.++.||..+++.|.++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~~~~~~~~~~l~~--~~~~~v~~v~~D~~d~~~l~~a- 74 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFS-------HPTFIYARPLTPDSTPSSVQLREE--FRSMGVTIIEGEMEEHEKMVSV- 74 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-------CCEEEEECCCCTTCCHHHHHHHHH--HHHTTCEEEECCTTCHHHHHHH-
T ss_pred cEEEEEcCCchhHHHHHHHHHhCC-------CcEEEEECCcccccChHHHHHHHH--hhcCCcEEEEecCCCHHHHHHH-
Confidence 3588888 4678999999888742 2566665432 0 111111100 0134789999999999999887
Q ss_pred cccccEEEEecc
Q psy8620 191 MNEAEACFVLAA 202 (695)
Q Consensus 191 i~~A~aviIla~ 202 (695)
++.+++||-++.
T Consensus 75 ~~~~d~vi~~a~ 86 (321)
T 3c1o_A 75 LKQVDIVISALP 86 (321)
T ss_dssp HTTCSEEEECCC
T ss_pred HcCCCEEEECCC
Confidence 567898887664
No 72
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=47.37 E-value=48 Score=32.87 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=49.0
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCC-----ccHHHHHHhcCCccccceEEEEcCCCChHhHhhcc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPME-----LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARAR 190 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-----~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~ 190 (695)
.|+|.|. |..|..+++.|.+.. ..|+++...+ +.+..+.+.. ....++.++.||..+++.|.++
T Consensus 4 ~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~~~~~~~~~~~~~~--l~~~~v~~v~~D~~d~~~l~~~- 73 (307)
T 2gas_A 4 KILILGPTGAIGRHIVWASIKAG-------NPTYALVRKTITAANPETKEELIDN--YQSLGVILLEGDINDHETLVKA- 73 (307)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHT-------CCEEEEECCSCCSSCHHHHHHHHHH--HHHTTCEEEECCTTCHHHHHHH-
T ss_pred EEEEECCCchHHHHHHHHHHhCC-------CcEEEEECCCcccCChHHHHHHHHH--HHhCCCEEEEeCCCCHHHHHHH-
Confidence 5888884 678999999888753 2455555332 1011111100 0024788999999999998876
Q ss_pred cccccEEEEecc
Q psy8620 191 MNEAEACFVLAA 202 (695)
Q Consensus 191 i~~A~aviIla~ 202 (695)
++.+++||-++.
T Consensus 74 ~~~~d~vi~~a~ 85 (307)
T 2gas_A 74 IKQVDIVICAAG 85 (307)
T ss_dssp HTTCSEEEECSS
T ss_pred HhCCCEEEECCc
Confidence 567888887664
No 73
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=47.25 E-value=31 Score=35.29 Aligned_cols=77 Identities=6% Similarity=0.074 Sum_probs=50.5
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCC--ccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPME--LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e--~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..|+|.|. |..|..+++.|.+.. ..|+++...+ .....+.+.. ....++.++.||..+.+.|.++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g-------~~V~~l~R~~~~~~~~~~~~~~--l~~~~v~~~~~Dl~d~~~l~~~-~~ 80 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAH-------RPTYILARPGPRSPSKAKIFKA--LEDKGAIIVYGLINEQEAMEKI-LK 80 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTT-------CCEEEEECSSCCCHHHHHHHHH--HHHTTCEEEECCTTCHHHHHHH-HH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCC-------CCEEEEECCCCCChhHHHHHHH--HHhCCcEEEEeecCCHHHHHHH-Hh
Confidence 47888886 667999998887642 2566665432 1112221100 0135899999999999998876 45
Q ss_pred --cccEEEEecc
Q psy8620 193 --EAEACFVLAA 202 (695)
Q Consensus 193 --~A~aviIla~ 202 (695)
.++.||-++.
T Consensus 81 ~~~~d~Vi~~a~ 92 (346)
T 3i6i_A 81 EHEIDIVVSTVG 92 (346)
T ss_dssp HTTCCEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 7888887665
No 74
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=45.62 E-value=45 Score=33.92 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=52.3
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCC--ccHHHHHHhcC--CccccceEEEEcCCCChHhHhhc
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPME--LDTTMRMILQV--PIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e--~~~~l~~~l~~--p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
...|+|.|. |..|..++..|.+.. ..|+++.... ....+..+... +....++.++.||..+.+.++++
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 97 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLN-------QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV 97 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC-------CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH
Confidence 457899884 567899988887642 3666665432 22222222110 00015899999999999998876
Q ss_pred ccccccEEEEeccC
Q psy8620 190 RMNEAEACFVLAAR 203 (695)
Q Consensus 190 ~i~~A~aviIla~~ 203 (695)
++.++.||-++..
T Consensus 98 -~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 98 -MKGVDHVLHQAAL 110 (351)
T ss_dssp -TTTCSEEEECCCC
T ss_pred -hcCCCEEEECCcc
Confidence 4588988887753
No 75
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=44.37 E-value=54 Score=33.73 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=49.0
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcC-CCChHhHhhccccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGS-CLKDGDLARARMNE 193 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd-~~~~~dL~ra~i~~ 193 (695)
..|+|.|. |..+..+++.|.+.. ..|+++...+.....+.+.. ..++.++.|| ..+++.++++ ++.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~~~~~~l~~----~~~v~~v~~D~l~d~~~l~~~-~~~ 73 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAVG-------HHVRAQVHSLKGLIAEELQA----IPNVTLFQGPLLNNVPLMDTL-FEG 73 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTT-------CCEEEEESCSCSHHHHHHHT----STTEEEEESCCTTCHHHHHHH-HTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-------CEEEEEECCCChhhHHHHhh----cCCcEEEECCccCCHHHHHHH-Hhc
Confidence 46888884 567899988887632 35666654332221122211 1368899999 9999998886 677
Q ss_pred ccEEEEecc
Q psy8620 194 AEACFVLAA 202 (695)
Q Consensus 194 A~aviIla~ 202 (695)
++.||..+.
T Consensus 74 ~d~Vi~~a~ 82 (352)
T 1xgk_A 74 AHLAFINTT 82 (352)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 898887654
No 76
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=44.27 E-value=38 Score=31.89 Aligned_cols=75 Identities=23% Similarity=0.190 Sum_probs=49.2
Q ss_pred ceEEEEc-cCccHHHHHHHHH-HHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLN-EFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~-e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
+.++|.| .+..+..+++.|. +. +..|+++...+ +..+..+.. ...++.++.||.+++++++++ ++.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~-------g~~V~~~~r~~-~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~-~~~ 73 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT-------DMHITLYGRQL-KTRIPPEII---DHERVTVIEGSFQNPGXLEQA-VTN 73 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC-------CCEEEEEESSH-HHHSCHHHH---TSTTEEEEECCTTCHHHHHHH-HTT
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC-------CceEEEEecCc-cccchhhcc---CCCceEEEECCCCCHHHHHHH-HcC
Confidence 5688988 4567889988887 42 23677765432 101221110 145789999999999998876 467
Q ss_pred ccEEEEecc
Q psy8620 194 AEACFVLAA 202 (695)
Q Consensus 194 A~aviIla~ 202 (695)
++.+|..+.
T Consensus 74 ~d~vv~~ag 82 (221)
T 3r6d_A 74 AEVVFVGAM 82 (221)
T ss_dssp CSEEEESCC
T ss_pred CCEEEEcCC
Confidence 888776553
No 77
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=43.01 E-value=55 Score=30.03 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=49.8
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
..|+|.|. +..+..+++.|.+.. .+|+++...+.. .. .....++.++.||..+++.++++ ++.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g-------~~V~~~~r~~~~--~~-----~~~~~~~~~~~~D~~~~~~~~~~-~~~~ 68 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG-------YEVTVLVRDSSR--LP-----SEGPRPAHVVVGDVLQAADVDKT-VAGQ 68 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESCGGG--SC-----SSSCCCSEEEESCTTSHHHHHHH-HTTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-------CeEEEEEeChhh--cc-----cccCCceEEEEecCCCHHHHHHH-HcCC
Confidence 46888885 567889988887632 367777643311 10 00135789999999999998876 5678
Q ss_pred cEEEEeccC
Q psy8620 195 EACFVLAAR 203 (695)
Q Consensus 195 ~aviIla~~ 203 (695)
+.||-++..
T Consensus 69 d~vi~~a~~ 77 (206)
T 1hdo_A 69 DAVIVLLGT 77 (206)
T ss_dssp SEEEECCCC
T ss_pred CEEEECccC
Confidence 888877653
No 78
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=42.43 E-value=44 Score=33.14 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=50.1
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCc----cHHHHH--HhcCCccccceEEEEcCCCChHhHhh
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL----DTTMRM--ILQVPIWAQRVIYIQGSCLKDGDLAR 188 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~----~~~l~~--~l~~p~~~~~v~~i~Gd~~~~~dL~r 188 (695)
..|+|.|. |..|..+++.|.+.. .+|+++..... .+..+. .+. ..++.++.||..+++.|.+
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~l~R~~~~~~~~~~~~~~~~l~----~~~v~~v~~D~~d~~~l~~ 73 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDLG-------HPTFLLVRESTASSNSEKAQLLESFK----ASGANIVHGSIDDHASLVE 73 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-------CCEEEECCCCCTTTTHHHHHHHHHHH----TTTCEEECCCTTCHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC-------CCEEEEECCcccccCHHHHHHHHHHH----hCCCEEEEeccCCHHHHHH
Confidence 45888884 778999998888742 25666654321 111111 111 3578999999999999987
Q ss_pred cccccccEEEEecc
Q psy8620 189 ARMNEAEACFVLAA 202 (695)
Q Consensus 189 a~i~~A~aviIla~ 202 (695)
+ ++.+++||-++.
T Consensus 74 ~-~~~~d~vi~~a~ 86 (308)
T 1qyc_A 74 A-VKNVDVVISTVG 86 (308)
T ss_dssp H-HHTCSEEEECCC
T ss_pred H-HcCCCEEEECCc
Confidence 7 567888887664
No 79
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=42.17 E-value=1.1e+02 Score=30.42 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=48.8
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
..|+|.| .|..|..+++.|.+.. ..|+++...+. . .. + .++.++.||.. .+.++++ ++.+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~-~-~~--~------~~~~~~~~Dl~-~~~~~~~-~~~~ 63 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG-------NTPIILTRSIG-N-KA--I------NDYEYRVSDYT-LEDLINQ-LNDV 63 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCCC---------------CCEEEECCCC-HHHHHHH-TTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-------CEEEEEeCCCC-c-cc--C------CceEEEEcccc-HHHHHHh-hcCC
Confidence 5788988 4667899988888742 36777765421 1 11 1 17889999999 8888876 5689
Q ss_pred cEEEEeccCC
Q psy8620 195 EACFVLAARN 204 (695)
Q Consensus 195 ~aviIla~~~ 204 (695)
+.||-++...
T Consensus 64 d~Vih~a~~~ 73 (311)
T 3m2p_A 64 DAVVHLAATR 73 (311)
T ss_dssp SEEEECCCCC
T ss_pred CEEEEccccC
Confidence 9988877643
No 80
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=42.00 E-value=39 Score=34.33 Aligned_cols=82 Identities=9% Similarity=0.196 Sum_probs=51.3
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc-c
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN-E 193 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~-~ 193 (695)
..|+|.|. |..|..+++.|.+..+ ...|+.++.......... ++.-....++.++.||..+.+.++++--+ +
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~-----~~~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 98 (346)
T 4egb_A 25 MNILVTGGAGFIGSNFVHYMLQSYE-----TYKIINFDALTYSGNLNN-VKSIQDHPNYYFVKGEIQNGELLEHVIKERD 98 (346)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCT-----TEEEEEEECCCTTCCGGG-GTTTTTCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred CeEEEECCccHHHHHHHHHHHhhCC-----CcEEEEEeccccccchhh-hhhhccCCCeEEEEcCCCCHHHHHHHHhhcC
Confidence 56888886 5678999988887531 246776654321111111 11111135899999999999998876322 3
Q ss_pred ccEEEEeccC
Q psy8620 194 AEACFVLAAR 203 (695)
Q Consensus 194 A~aviIla~~ 203 (695)
++.||-++..
T Consensus 99 ~d~Vih~A~~ 108 (346)
T 4egb_A 99 VQVIVNFAAE 108 (346)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCcc
Confidence 7888877654
No 81
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=41.98 E-value=99 Score=28.61 Aligned_cols=69 Identities=4% Similarity=-0.037 Sum_probs=47.3
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
+|+|.|. |..+..+++.|.+.. ..|+++...+ +....+ ..++.++.||.++++. ..++.++
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~--~~~~~~------~~~~~~~~~D~~d~~~---~~~~~~d 63 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG-------HEVTAIVRNA--GKITQT------HKDINILQKDIFDLTL---SDLSDQN 63 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCS--HHHHHH------CSSSEEEECCGGGCCH---HHHTTCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCC-------CEEEEEEcCc--hhhhhc------cCCCeEEeccccChhh---hhhcCCC
Confidence 4888884 667899988887642 3677776543 223322 1478999999998776 3356788
Q ss_pred EEEEeccC
Q psy8620 196 ACFVLAAR 203 (695)
Q Consensus 196 aviIla~~ 203 (695)
.||-++..
T Consensus 64 ~vi~~ag~ 71 (221)
T 3ew7_A 64 VVVDAYGI 71 (221)
T ss_dssp EEEECCCS
T ss_pred EEEECCcC
Confidence 88877654
No 82
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=40.36 E-value=65 Score=32.58 Aligned_cols=69 Identities=14% Similarity=0.017 Sum_probs=48.6
Q ss_pred CCceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 114 SEKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 114 ~~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
..+.|+|.|. |..|..+++.|.+.. ..|++++..+.. .++.++.||..+.+.+.++ ++
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~-------------~~~~~~~~Dl~d~~~~~~~-~~ 76 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQG-------RTVRGFDLRPSG-------------TGGEEVVGSLEDGQALSDA-IM 76 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTT-------CCEEEEESSCCS-------------SCCSEEESCTTCHHHHHHH-HT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-------CEEEEEeCCCCC-------------CCccEEecCcCCHHHHHHH-Hh
Confidence 4567889886 567899998888742 357776543321 3678999999999988876 45
Q ss_pred cccEEEEeccC
Q psy8620 193 EAEACFVLAAR 203 (695)
Q Consensus 193 ~A~aviIla~~ 203 (695)
.++.||-++..
T Consensus 77 ~~d~vih~A~~ 87 (347)
T 4id9_A 77 GVSAVLHLGAF 87 (347)
T ss_dssp TCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 88888877754
No 83
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=38.62 E-value=33 Score=35.28 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=50.3
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCC-ChHhHhhccccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCL-KDGDLARARMNE 193 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~-~~~dL~ra~i~~ 193 (695)
..|+|.| .|..|..+++.|.+.. +..|++++..+. ....+.. ..++.++.||.. +.+.++++ ++.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~~------g~~V~~~~r~~~--~~~~~~~----~~~v~~~~~Dl~~d~~~~~~~-~~~ 91 (372)
T 3slg_A 25 KKVLILGVNGFIGHHLSKRILETT------DWEVFGMDMQTD--RLGDLVK----HERMHFFEGDITINKEWVEYH-VKK 91 (372)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHS------SCEEEEEESCCT--TTGGGGG----STTEEEEECCTTTCHHHHHHH-HHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCC------CCEEEEEeCChh--hhhhhcc----CCCeEEEeCccCCCHHHHHHH-hcc
Confidence 5788988 4667899998888741 136777664331 1111111 358999999999 88888765 457
Q ss_pred ccEEEEeccC
Q psy8620 194 AEACFVLAAR 203 (695)
Q Consensus 194 A~aviIla~~ 203 (695)
++.||-++..
T Consensus 92 ~d~Vih~A~~ 101 (372)
T 3slg_A 92 CDVILPLVAI 101 (372)
T ss_dssp CSEEEECBCC
T ss_pred CCEEEEcCcc
Confidence 8888876653
No 84
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=38.32 E-value=77 Score=31.06 Aligned_cols=72 Identities=7% Similarity=0.005 Sum_probs=48.7
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.|+|.|. |..|..+++.|.+.. ...|+++...+. . ...+ ...++.++.||..+++.|+++ ++.++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~------g~~V~~~~R~~~-~-~~~~-----~~~~v~~~~~D~~d~~~l~~~-~~~~d 67 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANH------IDHFHIGVRNVE-K-VPDD-----WRGKVSVRQLDYFNQESMVEA-FKGMD 67 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTT------CTTEEEEESSGG-G-SCGG-----GBTTBEEEECCTTCHHHHHHH-TTTCS
T ss_pred EEEEEcCCchHHHHHHHHHhhCC------CCcEEEEECCHH-H-HHHh-----hhCCCEEEEcCCCCHHHHHHH-HhCCC
Confidence 3788884 567889988877630 135666654321 1 1111 145899999999999999886 56889
Q ss_pred EEEEecc
Q psy8620 196 ACFVLAA 202 (695)
Q Consensus 196 aviIla~ 202 (695)
.||-++.
T Consensus 68 ~vi~~a~ 74 (289)
T 3e48_A 68 TVVFIPS 74 (289)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 8887765
No 85
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=36.20 E-value=55 Score=32.45 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=47.3
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc--
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN-- 192 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~-- 192 (695)
.+|+|.|. |..+..+++.|.+... +..|++++..+....+. .++.++.||..+.+.++++ ++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~-----g~~V~~~~r~~~~~~~~---------~~~~~~~~D~~d~~~~~~~-~~~~ 67 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYG-----TENVIASDIRKLNTDVV---------NSGPFEVVNALDFNQIEHL-VEVH 67 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHC-----GGGEEEEESCCCSCHHH---------HSSCEEECCTTCHHHHHHH-HHHT
T ss_pred ceEEEECCccHHHHHHHHHHHHhCC-----CCEEEEEcCCCcccccc---------CCCceEEecCCCHHHHHHH-Hhhc
Confidence 46888885 5678999988877510 12566665433222211 2567899999999888776 33
Q ss_pred cccEEEEecc
Q psy8620 193 EAEACFVLAA 202 (695)
Q Consensus 193 ~A~aviIla~ 202 (695)
.++.||-++.
T Consensus 68 ~~d~vih~a~ 77 (312)
T 2yy7_A 68 KITDIYLMAA 77 (312)
T ss_dssp TCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 6788887764
No 86
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=36.10 E-value=1.7e+02 Score=27.58 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=48.2
Q ss_pred CceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 115 EKHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 115 ~~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
.+.|+|.| .+..+..+++.|.+.. ...|+++...+. . .. .....++.++.||.+++++++++ ++.
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G------~~~V~~~~R~~~-~-~~-----~~~~~~~~~~~~Dl~d~~~~~~~-~~~ 88 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQ------TIKQTLFARQPA-K-IH-----KPYPTNSQIIMGDVLNHAALKQA-MQG 88 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT------TEEEEEEESSGG-G-SC-----SSCCTTEEEEECCTTCHHHHHHH-HTT
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCC------CceEEEEEcChh-h-hc-----ccccCCcEEEEecCCCHHHHHHH-hcC
Confidence 45788988 4556888877776421 136666654321 1 11 11235789999999999998886 567
Q ss_pred ccEEEEecc
Q psy8620 194 AEACFVLAA 202 (695)
Q Consensus 194 A~aviIla~ 202 (695)
++.||..+.
T Consensus 89 ~D~vv~~a~ 97 (236)
T 3qvo_A 89 QDIVYANLT 97 (236)
T ss_dssp CSEEEEECC
T ss_pred CCEEEEcCC
Confidence 888776543
No 87
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=34.67 E-value=93 Score=31.73 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=51.6
Q ss_pred ceEEEEcc-CccHHHHHHHHHHH-hcCCCCCcceEEEecCCCcc-HHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEF-YAHPLLQNYYVVLLSPMELD-TTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~-~~~~~~~~~~VVil~~~e~~-~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
+.|+|.|. |..|..+++.|.+. .+ ..|++++..+.. ..+...+. ..++.++.||..+.+.++++ ++
T Consensus 22 k~vlVTGatG~iG~~l~~~L~~~~g~------~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~-~~ 90 (344)
T 2gn4_A 22 QTILITGGTGSFGKCFVRKVLDTTNA------KKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYA-LE 90 (344)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC------SEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHH-TT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCC------CEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHH-Hh
Confidence 57888884 56789998888875 21 167777654321 12222222 24789999999999998876 45
Q ss_pred cccEEEEeccC
Q psy8620 193 EAEACFVLAAR 203 (695)
Q Consensus 193 ~A~aviIla~~ 203 (695)
..+.||-++..
T Consensus 91 ~~D~Vih~Aa~ 101 (344)
T 2gn4_A 91 GVDICIHAAAL 101 (344)
T ss_dssp TCSEEEECCCC
T ss_pred cCCEEEECCCC
Confidence 78888877653
No 88
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=32.29 E-value=1.4e+02 Score=27.71 Aligned_cols=70 Identities=11% Similarity=-0.020 Sum_probs=47.3
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.|+|.|. +..+..+++.|.+.. ..|+++...+ +....+. ..++.++.||.++++. ..++.++
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~--~~~~~~~-----~~~~~~~~~D~~d~~~---~~~~~~d 64 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG-------HEVLAVVRDP--QKAADRL-----GATVATLVKEPLVLTE---ADLDSVD 64 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCH--HHHHHHT-----CTTSEEEECCGGGCCH---HHHTTCS
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-------CEEEEEEecc--ccccccc-----CCCceEEecccccccH---hhcccCC
Confidence 3788885 567899988887642 3677776443 2233221 3588999999998776 3356788
Q ss_pred EEEEeccC
Q psy8620 196 ACFVLAAR 203 (695)
Q Consensus 196 aviIla~~ 203 (695)
.||-++..
T Consensus 65 ~vi~~ag~ 72 (224)
T 3h2s_A 65 AVVDALSV 72 (224)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 88877654
No 89
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=32.29 E-value=2.9e+02 Score=26.81 Aligned_cols=77 Identities=8% Similarity=-0.128 Sum_probs=46.9
Q ss_pred CceEEEEccC-ccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc-
Q psy8620 115 EKHVVVCSTT-LHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN- 192 (695)
Q Consensus 115 ~~HvVI~G~~-~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~- 192 (695)
.+.++|.|.+ ..+..++..|.+.. ..|++++..+..+.....+.. ...++.++.+|.++.++++++ .+
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G-------~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~-~~~ 100 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAG-------AHVLAWGRTDGVKEVADEIAD--GGGSAEAVVADLADLEGAANV-AEE 100 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSTHHHHHHHHHHT--TTCEEEEEECCTTCHHHHHHH-HHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEcCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHH-HHH
Confidence 4678888854 34788888777642 367777644322222222221 245788999999999988776 33
Q ss_pred -----cccEEEEec
Q psy8620 193 -----EAEACFVLA 201 (695)
Q Consensus 193 -----~A~aviIla 201 (695)
.-+.+|-.+
T Consensus 101 ~~~~g~iD~lv~nA 114 (273)
T 3uf0_A 101 LAATRRVDVLVNNA 114 (273)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHhcCCCcEEEECC
Confidence 446555443
No 90
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=32.02 E-value=56 Score=32.96 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=48.9
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCc-cHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL-DTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~-~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
+.|+|.| .|..|..+++.|.+.. ..|+++...+. ......+.+.+....++.++.||.++.+.++++ ++.
T Consensus 6 ~~vlVTGatGfIG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~ 77 (337)
T 2c29_D 6 ETVCVTGASGFIGSWLVMRLLERG-------YTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEA-IKG 77 (337)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTT-------CEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHH-HTT
T ss_pred CEEEEECCchHHHHHHHHHHHHCC-------CEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHH-HcC
Confidence 5688888 5567889988887642 25554432221 112222212111123688999999998888766 467
Q ss_pred ccEEEEeccC
Q psy8620 194 AEACFVLAAR 203 (695)
Q Consensus 194 A~aviIla~~ 203 (695)
++.||-++..
T Consensus 78 ~d~Vih~A~~ 87 (337)
T 2c29_D 78 CTGVFHVATP 87 (337)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEeccc
Confidence 7888877753
No 91
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=31.81 E-value=58 Score=31.89 Aligned_cols=73 Identities=10% Similarity=0.087 Sum_probs=47.7
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.|+|.|. |..|..+++.|.+. . .+..|+++...+.. ...+. ..++.++.||..+++.++++ ++.++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~--~---~g~~V~~~~r~~~~--~~~l~-----~~~~~~~~~D~~d~~~l~~~-~~~~d 68 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKK--V---PASQIIAIVRNVEK--ASTLA-----DQGVEVRHGDYNQPESLQKA-FAGVS 68 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTT--S---CGGGEEEEESCTTT--THHHH-----HTTCEEEECCTTCHHHHHHH-TTTCS
T ss_pred eEEEEcCCchHHHHHHHHHHHh--C---CCCeEEEEEcCHHH--HhHHh-----hcCCeEEEeccCCHHHHHHH-HhcCC
Confidence 4778775 56688888777652 0 02367666543311 11111 23688999999999999887 56789
Q ss_pred EEEEecc
Q psy8620 196 ACFVLAA 202 (695)
Q Consensus 196 aviIla~ 202 (695)
.||-++.
T Consensus 69 ~vi~~a~ 75 (287)
T 2jl1_A 69 KLLFISG 75 (287)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 8887765
No 92
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Probab=30.61 E-value=47 Score=33.87 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=46.8
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc-
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE- 193 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~- 193 (695)
..|+|.|. |..|..+++.|.+.. +......|+++...+.... + ...++.++.||.++.+.++++ ++.
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g--~~~~~~~V~~~~r~~~~~~----~----~~~~~~~~~~Dl~d~~~~~~~-~~~~ 70 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLAD--TPGGPWKVYGVARRTRPAW----H----EDNPINYVQCDISDPDDSQAK-LSPL 70 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTT--CTTCSEEEEEEESSCCCSC----C----CSSCCEEEECCTTSHHHHHHH-HTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CCCCceEEEEEeCCCCccc----c----ccCceEEEEeecCCHHHHHHH-HhcC
Confidence 36888884 556888877665421 0000136777654332111 1 134788999999999888765 333
Q ss_pred --ccEEEEeccC
Q psy8620 194 --AEACFVLAAR 203 (695)
Q Consensus 194 --A~aviIla~~ 203 (695)
++.||-++..
T Consensus 71 ~~~d~vih~a~~ 82 (364)
T 2v6g_A 71 TDVTHVFYVTWA 82 (364)
T ss_dssp TTCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 8888877654
No 93
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=30.15 E-value=90 Score=31.34 Aligned_cols=75 Identities=11% Similarity=0.306 Sum_probs=48.1
Q ss_pred eEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCC--Cc-cHHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 117 HVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPM--EL-DTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 117 HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~--e~-~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
.|+|.| .|..|..+++.|.+.. ..|++++.. +. ......+.. ..++.++.||.++++.++++ ++
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~l~~----~~~~~~~~~Dl~d~~~~~~~-~~ 70 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFALSQG-------IDLIVFDNLSRKGATDNLHWLSS----LGNFEFVHGDIRNKNDVTRL-IT 70 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCCSTTHHHHHHHHHT----TCCCEEEECCTTCHHHHHHH-HH
T ss_pred EEEEeCCCchhHHHHHHHHHhCC-------CEEEEEeCCCccCchhhhhhhcc----CCceEEEEcCCCCHHHHHHH-Hh
Confidence 588888 4567889988887632 367776532 11 111222211 23588999999999988776 33
Q ss_pred c--ccEEEEeccC
Q psy8620 193 E--AEACFVLAAR 203 (695)
Q Consensus 193 ~--A~aviIla~~ 203 (695)
. .+.||-++..
T Consensus 71 ~~~~d~vih~A~~ 83 (347)
T 1orr_A 71 KYMPDSCFHLAGQ 83 (347)
T ss_dssp HHCCSEEEECCCC
T ss_pred ccCCCEEEECCcc
Confidence 4 7888877653
No 94
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=30.03 E-value=77 Score=32.81 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=47.0
Q ss_pred eEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccE
Q psy8620 117 HVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEA 196 (695)
Q Consensus 117 HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~a 196 (695)
.|+|+|.|..++.+++.|.+. ..|.+.+-.. +.+..+ ......+..|+.+.+.|+++ +++++.
T Consensus 18 kilvlGaG~vG~~~~~~L~~~--------~~v~~~~~~~--~~~~~~------~~~~~~~~~d~~d~~~l~~~-~~~~Dv 80 (365)
T 3abi_A 18 KVLILGAGNIGRAIAWDLKDE--------FDVYIGDVNN--ENLEKV------KEFATPLKVDASNFDKLVEV-MKEFEL 80 (365)
T ss_dssp EEEEECCSHHHHHHHHHHTTT--------SEEEEEESCH--HHHHHH------TTTSEEEECCTTCHHHHHHH-HTTCSE
T ss_pred EEEEECCCHHHHHHHHHHhcC--------CCeEEEEcCH--HHHHHH------hccCCcEEEecCCHHHHHHH-HhCCCE
Confidence 499999988899888877542 2455544322 223332 23556778899999999887 778898
Q ss_pred EEEecc
Q psy8620 197 CFVLAA 202 (695)
Q Consensus 197 viIla~ 202 (695)
||.+.+
T Consensus 81 Vi~~~p 86 (365)
T 3abi_A 81 VIGALP 86 (365)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 777654
No 95
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=29.80 E-value=71 Score=32.65 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=51.4
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHH-HH---hc--CCccccceEEEEcCCCChHhHh
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMR-MI---LQ--VPIWAQRVIYIQGSCLKDGDLA 187 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~-~~---l~--~p~~~~~v~~i~Gd~~~~~dL~ 187 (695)
...|+|.|. |..|..++..|.+.. .+..|++++..+.+.... .. +. ......++.++.||.++++.++
T Consensus 10 ~~~vlVTGatG~IG~~l~~~L~~~~-----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 10 NQTILITGGAGFVGSNLAFHFQENH-----PKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHC-----TTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhC-----CCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHH
Confidence 357888874 556889988887621 123677775432210000 00 00 0011346799999999999999
Q ss_pred hcccccccEEEEecc
Q psy8620 188 RARMNEAEACFVLAA 202 (695)
Q Consensus 188 ra~i~~A~aviIla~ 202 (695)
++.....+.||=++.
T Consensus 85 ~~~~~~~D~vih~A~ 99 (362)
T 3sxp_A 85 RLEKLHFDYLFHQAA 99 (362)
T ss_dssp HHTTSCCSEEEECCC
T ss_pred HhhccCCCEEEECCc
Confidence 986778898887765
No 96
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=29.70 E-value=86 Score=30.49 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=46.2
Q ss_pred EEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCc-cHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 118 VVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL-DTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 118 vVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~-~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
|+|.|. |..|..+++.|.+. + .+..|+++...+. ...+. ..++.++.||..+++.++++ ++.++
T Consensus 2 ilVtGatG~iG~~l~~~L~~~---~--~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~-~~~~d 67 (286)
T 2zcu_A 2 IAITGATGQLGHYVIESLMKT---V--PASQIVAIVRNPAKAQALA--------AQGITVRQADYGDEAALTSA-LQGVE 67 (286)
T ss_dssp EEEESTTSHHHHHHHHHHTTT---S--CGGGEEEEESCTTTCHHHH--------HTTCEEEECCTTCHHHHHHH-TTTCS
T ss_pred EEEEcCCchHHHHHHHHHHhh---C--CCceEEEEEcChHhhhhhh--------cCCCeEEEcCCCCHHHHHHH-HhCCC
Confidence 678875 56688888777652 0 0236666654321 11121 23688999999999999887 56788
Q ss_pred EEEEecc
Q psy8620 196 ACFVLAA 202 (695)
Q Consensus 196 aviIla~ 202 (695)
.||-++.
T Consensus 68 ~vi~~a~ 74 (286)
T 2zcu_A 68 KLLLISS 74 (286)
T ss_dssp EEEECC-
T ss_pred EEEEeCC
Confidence 8887665
No 97
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=29.07 E-value=92 Score=29.47 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=49.0
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
+.|+|.| .+..+..+++.|.+.. .+..|+++...+ +....+ ..++.++.+|.++.+.++++ ++.+
T Consensus 5 ~~ilVtGasG~iG~~l~~~l~~~~-----~g~~V~~~~r~~--~~~~~~------~~~~~~~~~D~~d~~~~~~~-~~~~ 70 (253)
T 1xq6_A 5 PTVLVTGASGRTGQIVYKKLKEGS-----DKFVAKGLVRSA--QGKEKI------GGEADVFIGDITDADSINPA-FQGI 70 (253)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-----TTCEEEEEESCH--HHHHHT------TCCTTEEECCTTSHHHHHHH-HTTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcC-----CCcEEEEEEcCC--Cchhhc------CCCeeEEEecCCCHHHHHHH-HcCC
Confidence 4688887 4556889988887641 023677776432 222221 34678999999999988876 4678
Q ss_pred cEEEEecc
Q psy8620 195 EACFVLAA 202 (695)
Q Consensus 195 ~aviIla~ 202 (695)
+.||-++.
T Consensus 71 d~vi~~a~ 78 (253)
T 1xq6_A 71 DALVILTS 78 (253)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 88877664
No 98
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=27.59 E-value=69 Score=30.39 Aligned_cols=74 Identities=16% Similarity=0.028 Sum_probs=47.5
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
+.++|.| .+..+..++..|.+..+ ...|++++..+.. .... ...++.++.+|.+++++++++ ++..
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~G~-----~~~V~~~~r~~~~--~~~~-----~~~~~~~~~~D~~d~~~~~~~-~~~~ 85 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQGL-----FSKVTLIGRRKLT--FDEE-----AYKNVNQEVVDFEKLDDYASA-FQGH 85 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTC-----CSEEEEEESSCCC--CCSG-----GGGGCEEEECCGGGGGGGGGG-GSSC
T ss_pred CeEEEECCCcHHHHHHHHHHHcCCC-----CCEEEEEEcCCCC--cccc-----ccCCceEEecCcCCHHHHHHH-hcCC
Confidence 4688888 45678999888877531 0156666533211 0000 023688999999999888776 5678
Q ss_pred cEEEEecc
Q psy8620 195 EACFVLAA 202 (695)
Q Consensus 195 ~aviIla~ 202 (695)
+.+|-++.
T Consensus 86 d~vi~~ag 93 (242)
T 2bka_A 86 DVGFCCLG 93 (242)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 88777654
No 99
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=27.43 E-value=80 Score=31.87 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=49.7
Q ss_pred ceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCCCc---cHHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 116 KHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL---DTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 116 ~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~---~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
..|+|.| .|..|..++..|.+.. .+..|++++..+. .+.+.. + ...++.++.||.++++.++++ +
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~-----~g~~V~~~~r~~~~~~~~~~~~-~----~~~~~~~~~~Dl~d~~~~~~~-~ 73 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNH-----PDVHVTVLDKLTYAGNKANLEA-I----LGDRVELVVGDIADAELVDKL-A 73 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHC-----TTCEEEEEECCCTTCCGGGTGG-G----CSSSEEEEECCTTCHHHHHHH-H
T ss_pred cEEEEeCCccHHHHHHHHHHHHhC-----CCCEEEEEeCCCCCCChhHHhh-h----ccCCeEEEECCCCCHHHHHHH-h
Confidence 4688888 4567899988887741 0136776654321 111111 1 124789999999999988876 5
Q ss_pred ccccEEEEeccC
Q psy8620 192 NEAEACFVLAAR 203 (695)
Q Consensus 192 ~~A~aviIla~~ 203 (695)
+.++.||-++..
T Consensus 74 ~~~d~vih~A~~ 85 (348)
T 1oc2_A 74 AKADAIVHYAAE 85 (348)
T ss_dssp TTCSEEEECCSC
T ss_pred hcCCEEEECCcc
Confidence 667888877653
No 100
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}
Probab=26.35 E-value=58 Score=32.46 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=47.4
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecC-CCcc-HHHHHHhcCCccccceEEEEcCCCChHhHhhcccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSP-MELD-TTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~-~e~~-~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~ 192 (695)
+.|+|.|. |..|..+++.|.+.. ..|+++.. .+.. .....+.+.+....++.++.||.++++.++++ ++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~ 73 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENG-------YSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAA-IE 73 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-------CEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHH-HT
T ss_pred CEEEEECChhHHHHHHHHHHHHCC-------CEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHH-Hc
Confidence 46888884 567889988887642 35665543 2100 00111111111123678899999999988776 56
Q ss_pred cccEEEEecc
Q psy8620 193 EAEACFVLAA 202 (695)
Q Consensus 193 ~A~aviIla~ 202 (695)
.++.||-++.
T Consensus 74 ~~d~vih~A~ 83 (322)
T 2p4h_X 74 GCVGIFHTAS 83 (322)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEEcCC
Confidence 7788887774
No 101
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=25.96 E-value=1.4e+02 Score=29.76 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=49.0
Q ss_pred CCceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc---HHHHHHhcCCccccceEEEEcCCCChHhHhhc
Q psy8620 114 SEKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD---TTMRMILQVPIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 114 ~~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~---~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
....|+|.|. |..|..+++.|.+.. ..|+++...+.. ..+..+ . ...++.++.||..+.+.++++
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~~Dl~d~~~~~~~ 81 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG-------YRVHGLVARRSSDTRWRLREL-G---IEGDIQYEDGDMADACSVQRA 81 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCCSSCCCHHHHHT-T---CGGGEEEEECCTTCHHHHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC-------CeEEEEeCCCccccccchhhc-c---ccCceEEEECCCCCHHHHHHH
Confidence 4567888885 556889988887642 367666543221 222221 1 134789999999999888775
Q ss_pred ccc-cccEEEEeccC
Q psy8620 190 RMN-EAEACFVLAAR 203 (695)
Q Consensus 190 ~i~-~A~aviIla~~ 203 (695)
--+ ..+.||-++..
T Consensus 82 ~~~~~~d~Vih~A~~ 96 (335)
T 1rpn_A 82 VIKAQPQEVYNLAAQ 96 (335)
T ss_dssp HHHHCCSEEEECCSC
T ss_pred HHHcCCCEEEECccc
Confidence 322 35777777653
No 102
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=25.84 E-value=1.6e+02 Score=29.27 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=47.6
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
+|+|.|. |..|..+++.|.+.. ..|+++...+... .. +. ..++.++.||..+.+.++++ ++.++
T Consensus 15 ~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~--~~-l~----~~~~~~~~~Dl~d~~~~~~~-~~~~d 79 (342)
T 2x4g_A 15 KYAVLGATGLLGHHAARAIRAAG-------HDLVLIHRPSSQI--QR-LA----YLEPECRVAEMLDHAGLERA-LRGLD 79 (342)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT-------CEEEEEECTTSCG--GG-GG----GGCCEEEECCTTCHHHHHHH-TTTCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-------CEEEEEecChHhh--hh-hc----cCCeEEEEecCCCHHHHHHH-HcCCC
Confidence 6889884 567899988887742 3677765433211 11 11 23788999999999998876 45788
Q ss_pred EEEEeccC
Q psy8620 196 ACFVLAAR 203 (695)
Q Consensus 196 aviIla~~ 203 (695)
.||-++..
T Consensus 80 ~vih~a~~ 87 (342)
T 2x4g_A 80 GVIFSAGY 87 (342)
T ss_dssp EEEEC---
T ss_pred EEEECCcc
Confidence 88877653
No 103
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=25.73 E-value=1.7e+02 Score=28.79 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=47.2
Q ss_pred cCCceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 113 QSEKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 113 ~~~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
...++|+|.|. |..|..+++.|.+.. ..|+++...+... . .++.++.||.++++.++++--
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~~--------~---l~~~~~~~Dl~d~~~~~~~~~ 71 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQN-------VEVFGTSRNNEAK--------L---PNVEMISLDIMDSQRVKKVIS 71 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCTTCC--------C---TTEEEEECCTTCHHHHHHHHH
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCC-------CEEEEEecCCccc--------c---ceeeEEECCCCCHHHHHHHHH
Confidence 35678889885 456889988887642 3677765433211 0 167899999999998877622
Q ss_pred -ccccEEEEeccC
Q psy8620 192 -NEAEACFVLAAR 203 (695)
Q Consensus 192 -~~A~aviIla~~ 203 (695)
...+.||-++..
T Consensus 72 ~~~~d~vih~A~~ 84 (321)
T 2pk3_A 72 DIKPDYIFHLAAK 84 (321)
T ss_dssp HHCCSEEEECCSC
T ss_pred hcCCCEEEEcCcc
Confidence 237888877653
No 104
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=25.67 E-value=73 Score=32.06 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=48.1
Q ss_pred CceEEEEc-cCccHHHHHHHHHHHhcCCCCCcceEEEecCC-C-cc--HHHHHHhcCCccccceEEEEcCCCChHhHhhc
Q psy8620 115 EKHVVVCS-TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPM-E-LD--TTMRMILQVPIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 115 ~~HvVI~G-~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~-e-~~--~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
.+.|+|.| .|..|..+++.|.+.. ..|+++... + .. ..+..+ . ...++.++.||..+++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G-------~~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~~~Dl~d~~~~~~~ 77 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG-------YAVNTTVRDPDNQKKVSHLLEL-Q---ELGDLKIFRADLTDELSFEAP 77 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT-------CEEEEEESCTTCTTTTHHHHHH-G---GGSCEEEEECCTTTSSSSHHH
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-------CEEEEEEcCcchhhhHHHHHhc-C---CCCcEEEEecCCCChHHHHHH
Confidence 45789998 4567899988887642 255543321 1 11 111111 1 124688999999988877765
Q ss_pred ccccccEEEEeccC
Q psy8620 190 RMNEAEACFVLAAR 203 (695)
Q Consensus 190 ~i~~A~aviIla~~ 203 (695)
++.+++||-++..
T Consensus 78 -~~~~D~Vih~A~~ 90 (338)
T 2rh8_A 78 -IAGCDFVFHVATP 90 (338)
T ss_dssp -HTTCSEEEEESSC
T ss_pred -HcCCCEEEEeCCc
Confidence 4567888887753
No 105
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=23.75 E-value=1.2e+02 Score=29.28 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=40.7
Q ss_pred ceEEEEccC-ccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc--HHHHHHhcCCccccceEEEEcCCCChHhHhhc
Q psy8620 116 KHVVVCSTT-LHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD--TTMRMILQVPIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 116 ~HvVI~G~~-~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~--~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
++++|.|.+ ..+..+++.|.+.. ..|+++...+.+ +.+...++ ....++.++.+|.+++++++++
T Consensus 8 k~vlVTGas~gIG~~~a~~l~~~G-------~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~ 75 (264)
T 3i4f_A 8 RHALITAGTKGLGKQVTEKLLAKG-------YSVTVTYHSDTTAMETMKETYK--DVEERLQFVQADVTKKEDLHKI 75 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTT-------CEEEEEESSCHHHHHHHHHHTG--GGGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHHHHCC-------CEEEEEcCCChHHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHH
Confidence 578888864 35788888877642 367766443321 22222222 1245789999999998887665
No 106
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.48 E-value=3e+02 Score=22.40 Aligned_cols=38 Identities=8% Similarity=-0.136 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhCCCccEEEEEeCccchh----hccCCCeEEe
Q psy8620 215 TILRSWAVKDFAPDVPQYVQIFRPENKL----HVKFAEFIVC 252 (695)
Q Consensus 215 ~i~~~laik~~~p~i~Iiv~i~~~~~~~----~~~gad~VI~ 252 (695)
.+-.+-.+|+..|++++++-....+... ...|++.++.
T Consensus 66 g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 107 (130)
T 3eod_A 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLL 107 (130)
T ss_dssp CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 3444556777788999887665544321 1247887654
No 107
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=23.29 E-value=1.6e+02 Score=27.74 Aligned_cols=72 Identities=14% Similarity=0.026 Sum_probs=46.8
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccce-EEEEcCCCChHhHhhcccc
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRV-IYIQGSCLKDGDLARARMN 192 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v-~~i~Gd~~~~~dL~ra~i~ 192 (695)
...|+|.|. +..|..+++.|.+.. ..|+++...+. ....+. ..++ .++.||.+ +.+.++ ++
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G-------~~V~~~~R~~~--~~~~~~-----~~~~~~~~~~Dl~--~~~~~~-~~ 83 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKG-------HEPVAMVRNEE--QGPELR-----ERGASDIVVANLE--EDFSHA-FA 83 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSGG--GHHHHH-----HTTCSEEEECCTT--SCCGGG-GT
T ss_pred CCeEEEECCCChHHHHHHHHHHhCC-------CeEEEEECChH--HHHHHH-----hCCCceEEEcccH--HHHHHH-Hc
Confidence 457888885 567899988887642 36777764432 122221 2378 89999998 455443 55
Q ss_pred cccEEEEeccC
Q psy8620 193 EAEACFVLAAR 203 (695)
Q Consensus 193 ~A~aviIla~~ 203 (695)
.++.||-++..
T Consensus 84 ~~D~vi~~ag~ 94 (236)
T 3e8x_A 84 SIDAVVFAAGS 94 (236)
T ss_dssp TCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78888877653
No 108
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=23.27 E-value=76 Score=31.53 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=44.2
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.|+|.|. |..|..++..|.+. + .+|++....... .. ....++.++.||..+ +++.++ ++.++
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~-------g-~~v~~~~~~~~~-~~------~~~~~~~~~~~Dl~~-~~~~~~-~~~~d 65 (313)
T 3ehe_A 3 LIVVTGGAGFIGSHVVDKLSES-------N-EIVVIDNLSSGN-EE------FVNEAARLVKADLAA-DDIKDY-LKGAE 65 (313)
T ss_dssp CEEEETTTSHHHHHHHHHHTTT-------S-CEEEECCCSSCC-GG------GSCTTEEEECCCTTT-SCCHHH-HTTCS
T ss_pred EEEEECCCchHHHHHHHHHHhC-------C-CEEEEEcCCCCC-hh------hcCCCcEEEECcCCh-HHHHHH-hcCCC
Confidence 5888885 55688887777652 1 455554322111 00 013578899999988 666654 45888
Q ss_pred EEEEeccC
Q psy8620 196 ACFVLAAR 203 (695)
Q Consensus 196 aviIla~~ 203 (695)
.||-++..
T Consensus 66 ~vih~a~~ 73 (313)
T 3ehe_A 66 EVWHIAAN 73 (313)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 88887764
No 109
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=23.18 E-value=77 Score=32.71 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=49.3
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
..|+|.|. |..+..+++.|.+.. ..|+++...+.... . . ...++.++.||..+.+.++++ ++.+
T Consensus 30 ~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~-~--~----~~~~v~~~~~Dl~d~~~~~~~-~~~~ 94 (379)
T 2c5a_A 30 LKISITGAGGFIASHIARRLKHEG-------HYVIASDWKKNEHM-T--E----DMFCDEFHLVDLRVMENCLKV-TEGV 94 (379)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSCCSSS-C--G----GGTCSEEEECCTTSHHHHHHH-HTTC
T ss_pred CeEEEECCccHHHHHHHHHHHHCC-------CeEEEEECCCccch-h--h----ccCCceEEECCCCCHHHHHHH-hCCC
Confidence 47888886 566889988887642 36776654321110 0 0 124788999999999988876 4688
Q ss_pred cEEEEeccC
Q psy8620 195 EACFVLAAR 203 (695)
Q Consensus 195 ~aviIla~~ 203 (695)
+.||-++..
T Consensus 95 d~Vih~A~~ 103 (379)
T 2c5a_A 95 DHVFNLAAD 103 (379)
T ss_dssp SEEEECCCC
T ss_pred CEEEECcee
Confidence 888877653
No 110
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=22.95 E-value=1.6e+02 Score=29.66 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=50.6
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCc--cHHHHHHhc-CCc-cccceEEEEcCCCChHhHhhcc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMEL--DTTMRMILQ-VPI-WAQRVIYIQGSCLKDGDLARAR 190 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~--~~~l~~~l~-~p~-~~~~v~~i~Gd~~~~~dL~ra~ 190 (695)
..|+|.|. |..|..++..|.+.. ..|++++..+. .+.+..+.+ ... ...++.++.||..+.+.++++
T Consensus 28 ~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 99 (352)
T 1sb8_A 28 KVWLITGVAGFIGSNLLETLLKLD-------QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNA- 99 (352)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHH-
T ss_pred CeEEEECCCcHHHHHHHHHHHHCC-------CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHH-
Confidence 46888885 567889988887642 36776654321 122222110 000 024789999999999988776
Q ss_pred cccccEEEEeccC
Q psy8620 191 MNEAEACFVLAAR 203 (695)
Q Consensus 191 i~~A~aviIla~~ 203 (695)
++.++.||-++..
T Consensus 100 ~~~~d~vih~A~~ 112 (352)
T 1sb8_A 100 CAGVDYVLHQAAL 112 (352)
T ss_dssp HTTCSEEEECCSC
T ss_pred hcCCCEEEECCcc
Confidence 4578888887653
No 111
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=22.86 E-value=1.1e+02 Score=30.88 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=48.0
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCC--------ccHHHHHHhcCCccccceEEEEcCCCChHhH
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPME--------LDTTMRMILQVPIWAQRVIYIQGSCLKDGDL 186 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e--------~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL 186 (695)
+.|+|.|. |..+..++..|.+.. ..|++++... ..+.++.+.+. ...++.++.||.++.+.+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~ 73 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAG-------YLPVVIDNFHNAFRGGGSLPESLRRVQEL--TGRSVEFEEMDILDQGAL 73 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-------CCEEEEECSSSSCBCSSSSBHHHHHHHHH--HTCCCEEEECCTTCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEecCCcccccccccHHHHHHHHhc--cCCceEEEECCCCCHHHH
Confidence 46888884 566889988887642 3566664321 12222222110 134788999999999888
Q ss_pred hhcccc-cccEEEEecc
Q psy8620 187 ARARMN-EAEACFVLAA 202 (695)
Q Consensus 187 ~ra~i~-~A~aviIla~ 202 (695)
+++--+ ..+.||-++.
T Consensus 74 ~~~~~~~~~d~vih~A~ 90 (348)
T 1ek6_A 74 QRLFKKYSFMAVIHFAG 90 (348)
T ss_dssp HHHHHHCCEEEEEECCS
T ss_pred HHHHHhcCCCEEEECCC
Confidence 775221 5777777665
No 112
>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}
Probab=22.51 E-value=2e+02 Score=29.87 Aligned_cols=87 Identities=8% Similarity=0.083 Sum_probs=55.3
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccc
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNE 193 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~ 193 (695)
-..+++|+|.+..++.++..+..+. ..|+++++.+. .... .+.| .--.++.++| .+.+....+..
T Consensus 198 p~~~L~I~GaGhva~aLa~la~~lg-------f~V~v~D~R~~--~~~~-~~fp---~a~~v~~~~p--~~~~~~~~~~~ 262 (362)
T 3on5_A 198 PKERLIIFGAGPDVPPLVTFASNVG-------FYTVVTDWRPN--QCEK-HFFP---DADEIIVDFP--ADFLRKFLIRP 262 (362)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHHT-------EEEEEEESCGG--GGCG-GGCT---TCSEEEESCH--HHHHHHSCCCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEECCCcc--cccc-ccCC---CceEEecCCH--HHHHhhcCCCC
Confidence 3579999999999999999888763 57888876541 1110 0122 1123566665 55677777877
Q ss_pred ccEEEEeccCCCCCCccchHHHHHHHH
Q psy8620 194 AEACFVLAARNYSDKTAADEHTILRSW 220 (695)
Q Consensus 194 A~aviIla~~~~~d~~~~D~~~i~~~l 220 (695)
-.+++|++.. ..-|...+..+|
T Consensus 263 ~t~vvv~TH~-----h~~D~~~L~~aL 284 (362)
T 3on5_A 263 DDFVLIMTHH-----FQKDQEILHFLL 284 (362)
T ss_dssp TCEEEECCSC-----HHHHHHHHHHHS
T ss_pred CeEEEEEeCC-----chhhHHHHHHHh
Confidence 7888887642 245655555544
No 113
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=22.27 E-value=91 Score=30.34 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=47.4
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEA 194 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A 194 (695)
+.|+|.|. +..+..++..|.+.. ..|++++..+... ...++.++.+|.++.+.++++ ++..
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~G-------~~V~~~~r~~~~~----------~~~~~~~~~~Dl~d~~~~~~~-~~~~ 65 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPMA-------EILRLADLSPLDP----------AGPNEECVQCDLADANAVNAM-VAGC 65 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGGE-------EEEEEEESSCCCC----------CCTTEEEEECCTTCHHHHHHH-HTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-------CEEEEEecCCccc----------cCCCCEEEEcCCCCHHHHHHH-HcCC
Confidence 47888884 456888877776532 3566665433211 035789999999999988876 4578
Q ss_pred cEEEEeccC
Q psy8620 195 EACFVLAAR 203 (695)
Q Consensus 195 ~aviIla~~ 203 (695)
+.+|-++..
T Consensus 66 D~vi~~Ag~ 74 (267)
T 3rft_A 66 DGIVHLGGI 74 (267)
T ss_dssp SEEEECCSC
T ss_pred CEEEECCCC
Confidence 887776643
No 114
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=22.23 E-value=74 Score=33.69 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=28.3
Q ss_pred CceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q psy8620 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPME 155 (695)
Q Consensus 115 ~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e 155 (695)
.+||||+|.|.-+-..+..|++.. .+.+|+++++.+
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~-----~~~~VtlI~~~~ 37 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLM-----PDLKITLISDRP 37 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHC-----TTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHhccC-----cCCeEEEEcCCC
Confidence 469999999988889999998753 235888888654
No 115
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=21.73 E-value=2.3e+02 Score=28.00 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=50.3
Q ss_pred CceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc-HHHHHHhcCCccccceEEE-EcCCCChHhHhhccc
Q psy8620 115 EKHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD-TTMRMILQVPIWAQRVIYI-QGSCLKDGDLARARM 191 (695)
Q Consensus 115 ~~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~-~~l~~~l~~p~~~~~v~~i-~Gd~~~~~dL~ra~i 191 (695)
.+.|+|.|. |..|..+++.|.+.. ..|+++...+.. ..+...++. ....++.++ .||.++.+.++++ +
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~d~~~~~~~-~ 81 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHG-------YKVRGTARSASKLANLQKRWDA-KYPGRFETAVVEDMLKQGAYDEV-I 81 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHHHHHH-HSTTTEEEEECSCTTSTTTTTTT-T
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-------CEEEEEeCCcccHHHHHHHhhc-cCCCceEEEEecCCcChHHHHHH-H
Confidence 357889885 567889988887642 366666543211 112211110 012467888 8999999888776 4
Q ss_pred ccccEEEEeccCC
Q psy8620 192 NEAEACFVLAARN 204 (695)
Q Consensus 192 ~~A~aviIla~~~ 204 (695)
+..+.||-++...
T Consensus 82 ~~~d~vih~A~~~ 94 (342)
T 1y1p_A 82 KGAAGVAHIASVV 94 (342)
T ss_dssp TTCSEEEECCCCC
T ss_pred cCCCEEEEeCCCC
Confidence 5788888777543
No 116
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A
Probab=21.45 E-value=1.7e+02 Score=30.79 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=53.5
Q ss_pred CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhcc---
Q psy8620 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARAR--- 190 (695)
Q Consensus 114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~--- 190 (695)
-..+++|+|.+..+..++..+..+. ..|+++++.+. ... -.+.| .-..++.+.+ .+.+....
T Consensus 203 P~~rL~IfGAGhva~ala~~a~~lg-------~~V~v~D~R~~--~~~-~~~fp---~a~~~~~~~p--~~~~~~~~~~~ 267 (386)
T 2we8_A 203 PRPRMLVFGAIDFAAAVAQQGAFLG-------YRVTVCDARPV--FAT-TARFP---TADEVVVDWP--HRYLAAQAEAG 267 (386)
T ss_dssp CCCEEEEECCSTHHHHHHHHHHHTT-------CEEEEEESCTT--TSC-TTTCS---SSSEEEESCH--HHHHHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCchh--hcc-cccCC---CceEEEeCCh--HHHHHhhcccc
Confidence 4679999999989999998888753 57888876541 110 00112 1125666765 45566655
Q ss_pred -cccccEEEEeccCCCCCCccchHHHHHHHH
Q psy8620 191 -MNEAEACFVLAARNYSDKTAADEHTILRSW 220 (695)
Q Consensus 191 -i~~A~aviIla~~~~~d~~~~D~~~i~~~l 220 (695)
+....+++|++.. ..-|...+..+|
T Consensus 268 ~~~~~t~vvvlTh~-----~~~D~~~L~~aL 293 (386)
T 2we8_A 268 AIDARTVVCVLTHD-----PKFDVPLLEVAL 293 (386)
T ss_dssp CCCTTCEEEECCCC-----HHHHHHHHHHHT
T ss_pred CCCCCcEEEEEECC-----hHhHHHHHHHHh
Confidence 6677778887642 234555555554
No 117
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=21.30 E-value=1.5e+02 Score=29.55 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=48.8
Q ss_pred ceEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCcc---HHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 116 KHVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELD---TTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 116 ~HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~---~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
+.|+|.|. |..|..+++.|.+.. ..|++++..+.. ..++.+.. ..++.++.||.++.+.++++--
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~ 72 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEKG-------YEVYGADRRSGEFASWRLKELGI----ENDVKIIHMDLLEFSNIIRTIE 72 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEECSCCSTTTTHHHHHTTC----TTTEEECCCCTTCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-------CEEEEEECCCcccccccHhhccc----cCceeEEECCCCCHHHHHHHHH
Confidence 46888885 566889988887642 367777643321 12222111 2468899999999988877522
Q ss_pred c-cccEEEEeccC
Q psy8620 192 N-EAEACFVLAAR 203 (695)
Q Consensus 192 ~-~A~aviIla~~ 203 (695)
+ +.+.||-++..
T Consensus 73 ~~~~d~vih~A~~ 85 (345)
T 2z1m_A 73 KVQPDEVYNLAAQ 85 (345)
T ss_dssp HHCCSEEEECCCC
T ss_pred hcCCCEEEECCCC
Confidence 1 35888777653
No 118
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=20.96 E-value=2e+02 Score=28.03 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=36.8
Q ss_pred CceEEEEccCc-cHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhh
Q psy8620 115 EKHVVVCSTTL-HADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLAR 188 (695)
Q Consensus 115 ~~HvVI~G~~~-~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~r 188 (695)
++.+||.|.+. .+..++..|.+.. ..|++.+..+ +....+.+. ..++.++.+|.+++++.++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~G-------a~V~~~~~~~--~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~ 64 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAG-------DKVCFIDIDE--KRSADFAKE---RPNLFYFHGDVADPLTLKK 64 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESCH--HHHHHHHTT---CTTEEEEECCTTSHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-------CEEEEEeCCH--HHHHHHHHh---cCCEEEEEecCCCHHHHHH
Confidence 46788988643 4778877777642 3677766433 223322221 3456777777777766554
No 119
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=20.77 E-value=1.8e+02 Score=27.92 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=41.3
Q ss_pred CceEEEEccC-c--cHHHHHHHHHHHhcCCCCCcceEEEecCCC-ccHHHHHHhcCCccccceEEEEcCCCChHhHhhc
Q psy8620 115 EKHVVVCSTT-L--HADTIMDFLNEFYAHPLLQNYYVVLLSPME-LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARA 189 (695)
Q Consensus 115 ~~HvVI~G~~-~--~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra 189 (695)
.+.++|.|.+ . .+..++..|.+.. ..|++....+ ..+.+..+.+. ....++.++.+|.+++++++++
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G-------~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~ 77 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAG-------ARLIFTYAGERLEKSVHELAGT-LDRNDSIILPCDVTNDAEIETC 77 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTT-------CEEEEEESSGGGHHHHHHHHHT-SSSCCCEEEECCCSSSHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCC-------CEEEEecCchHHHHHHHHHHHh-cCCCCceEEeCCCCCHHHHHHH
Confidence 4578888853 2 6888888887642 3566665433 22233333221 1123789999999998887664
No 120
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=20.49 E-value=65 Score=35.20 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=30.9
Q ss_pred CChhhhhhheeeeeeccCc--CCcc----cCCcccchhHHHhHHHH
Q psy8620 43 LNLFQATYYVVVTFSTVGY--GDFV----PDIWPSQLYMVIMICVA 82 (695)
Q Consensus 43 ~~~~da~Yf~vvT~sTVGY--GDi~----P~t~~gri~~i~~i~~g 82 (695)
.++.+|+.-++-+++|||- |.+. ..++.+|++.++.|++|
T Consensus 422 ~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~G 467 (494)
T 3pjz_A 422 MDELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFG 467 (494)
T ss_dssp SCHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHH
Confidence 6789999999889999985 5432 35677899888877765
No 121
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Probab=20.39 E-value=1.6e+02 Score=29.33 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=49.1
Q ss_pred eEEEEc-cCccHHHHHHHHHHH-hcCCCCCcceEEEecCCCc---cHHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620 117 HVVVCS-TTLHADTIMDFLNEF-YAHPLLQNYYVVLLSPMEL---DTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM 191 (695)
Q Consensus 117 HvVI~G-~~~~~~~l~~~L~e~-~~~~~~~~~~VVil~~~e~---~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i 191 (695)
+|+|.| .|..|..++..|.+. . ++.....|++++..+. .+.+..+ . ...++.++.||.++++.++++-
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~--~g~~~~~V~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~~Dl~d~~~~~~~~- 74 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAY--PDVPADEVIVLDSLTYAGNRANLAPV-D---ADPRLRFVHGDIRDAGLLAREL- 74 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSC--TTSCCSEEEEEECCCTTCCGGGGGGG-T---TCTTEEEEECCTTCHHHHHHHT-
T ss_pred eEEEECCccHHHHHHHHHHHhhhc--CCCCceEEEEEECCCccCchhhhhhc-c---cCCCeEEEEcCCCCHHHHHHHh-
Confidence 478888 456788998888762 1 0000036777654221 1112111 1 1247899999999999988763
Q ss_pred ccccEEEEeccC
Q psy8620 192 NEAEACFVLAAR 203 (695)
Q Consensus 192 ~~A~aviIla~~ 203 (695)
..++.||-++..
T Consensus 75 ~~~d~Vih~A~~ 86 (337)
T 1r6d_A 75 RGVDAIVHFAAE 86 (337)
T ss_dssp TTCCEEEECCSC
T ss_pred cCCCEEEECCCc
Confidence 788888877653
No 122
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.23 E-value=2.1e+02 Score=23.52 Aligned_cols=37 Identities=8% Similarity=-0.206 Sum_probs=21.3
Q ss_pred HHHHHHHhhhCCCccEEEEEeCccch----hhccCCCeEEe
Q psy8620 216 ILRSWAVKDFAPDVPQYVQIFRPENK----LHVKFAEFIVC 252 (695)
Q Consensus 216 i~~~laik~~~p~i~Iiv~i~~~~~~----~~~~gad~VI~ 252 (695)
+-.+-.+|+..|++++++-....+.. ....|++.++.
T Consensus 62 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (134)
T 3f6c_A 62 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVS 102 (134)
T ss_dssp HHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEe
Confidence 34445567778899987765544332 12247887765
No 123
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=20.22 E-value=1.9e+02 Score=28.35 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=45.2
Q ss_pred eEEEEcc-CccHHHHHHHHHHHhcCCCCCcceEEEecCCCccHHHHHHhcCCccccceEEEEcCCCChHhHhhccccccc
Q psy8620 117 HVVVCST-TLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAE 195 (695)
Q Consensus 117 HvVI~G~-~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~ 195 (695)
.|+|.|. |..+..+++.|.+.. ..|++++..+... ... ...++.++.||..+.+ +.++- +. +
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~--~~~-----~~~~~~~~~~Dl~d~~-~~~~~-~~-d 64 (312)
T 3ko8_A 2 RIVVTGGAGFIGSHLVDKLVELG-------YEVVVVDNLSSGR--REF-----VNPSAELHVRDLKDYS-WGAGI-KG-D 64 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------CEEEEECCCSSCC--GGG-----SCTTSEEECCCTTSTT-TTTTC-CC-S
T ss_pred EEEEECCCChHHHHHHHHHHhCC-------CEEEEEeCCCCCc--hhh-----cCCCceEEECccccHH-HHhhc-CC-C
Confidence 4788885 567889988887642 3677776433111 000 1357889999999888 66553 33 7
Q ss_pred EEEEeccC
Q psy8620 196 ACFVLAAR 203 (695)
Q Consensus 196 aviIla~~ 203 (695)
.||-++..
T Consensus 65 ~vih~A~~ 72 (312)
T 3ko8_A 65 VVFHFAAN 72 (312)
T ss_dssp EEEECCSS
T ss_pred EEEECCCC
Confidence 77777653
Done!