RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8620
(695 letters)
>gnl|CDD|202668 pfam03493, BK_channel_a, Calcium-activated BK potassium channel
alpha subunit.
Length = 101
Score = 113 bits (286), Expect = 4e-30
Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 39/134 (29%)
Query: 238 PENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLY 297
EN H FA+ ++C +ELK ALLA +C CPG STL+T L +S Q G S++ W + Y
Sbjct: 1 YENSWHWSFADQVICVEELKLALLAKSCLCPGISTLITNLFTSSSPQVGDPSKDNWIKEY 60
Query: 298 GRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKS 357
R SGNEIY I L S F G S
Sbjct: 61 LRGSGNEIYTIPL-PSAF--------------------------------------VGLS 81
Query: 358 FTYASFHSHRKYGM 371
FT + ++K G+
Sbjct: 82 FTQVARLLYKKLGV 95
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the
two membrane helix type ion channels found in bacteria.
Length = 74
Score = 47.6 bits (114), Expect = 4e-07
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQL----YMVIMICVALIVL 86
+ A Y+ VT +T+GYGD VP +L Y++I I + L+ L
Sbjct: 23 WDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGIPLFLLFL 70
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 41.2 bits (97), Expect = 0.002
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 43 LNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPT 88
+L A Y+ +VT STVGYGD VP ++L+ + +I + + V T
Sbjct: 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFAT 212
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 31.7 bits (73), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 424 AHKADAPPSKLTRLAFYSVEFYLFSLDDLLRA 455
+ PP++L RL F S E + + DL RA
Sbjct: 81 QFRQRHPPARLKRLHFISFEKFPLTRADLARA 112
>gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 212
Score = 31.2 bits (70), Expect = 1.4
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLA 94
L + V T +TVG + VP + S L + V L +
Sbjct: 114 EILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEAILAL 167
>gnl|CDD|226319 COG3797, COG3797, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 178
Score = 30.1 bits (68), Expect = 2.6
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 25/88 (28%)
Query: 452 LLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVA---------------VQKLTSLAF 496
LLR G+ + VV +L + + A+ T +A KL + AF
Sbjct: 7 LLR-GVNVGGGRKVVMADLKAALTDLGFANVRTYIASGNLVFESEAGAAELEAKLEA-AF 64
Query: 497 -----YSVEFYLFSLDDLLRAGILLAEN 519
V+ + S +D + A N
Sbjct: 65 EKRFGRHVDILVRSAEDWET---IAAAN 89
>gnl|CDD|216507 pfam01446, Rep_1, Replication protein. Replication proteins (rep)
are involved in plasmid replication. The Rep protein
binds to the plasmid DNA and nicks it at the double
strand origin (dso) of replication. The 3'-hydroxyl end
created is extended by the host DNA replicase, and the
5' end is displaced during synthesis. At the end of one
replication round, Rep introduces a second single
stranded break at the dso and ligates the ssDNA
extremities generating one double-stranded plasmid and
one circular ssDNA form. Complementary strand synthesis
of the circular ssDNA is usually initiated at the
single-stranded origin by the host RNA polymerase.
Length = 232
Score = 30.0 bits (68), Expect = 3.9
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 306 YHILLA-DSRFFGEEGQISQEEWHRLYGRC 334
+H+LL +F + ISQ EW L+ +
Sbjct: 84 FHVLLMVKPSYFTSKNYISQAEWTELWKKA 113
>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tyrosine hydroxylase (TyrOH). TrpOH oxidizes
L-tryptophan to 5-hydroxy-L-tryptophan, the
rate-limiting step in the biosynthesis of serotonin
(5-hydroxytryptamine), a widely distributed hormone and
neurotransmitter.
Length = 287
Score = 29.8 bits (67), Expect = 4.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 487 AVQKLTSLAFYSVEFYLFSLDDLLR---AGIL 515
+QKL + F++VEF L D L+ AG+L
Sbjct: 199 DIQKLATCYFFTVEFGLCKQDGQLKVYGAGLL 230
>gnl|CDD|149395 pfam08321, PPP5, PPP5 TPR repeat region. This region is specific
to the PPP5 subfamily of serine/threonine phosphatases
and contains TPR repeats.
Length = 95
Score = 28.1 bits (63), Expect = 5.5
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 223 KDFAPDVPQYVQIFRPENKLHVKFAEFIVCE 253
+F D+ + F+ + KLH K A I+ +
Sbjct: 54 LEFVKDMMER---FKDQKKLHKKCAYQILLQ 81
>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.
Length = 148
Score = 28.3 bits (64), Expect = 8.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 314 RFFGEEGQISQEEWHRLYGRCSGNE 338
R + G+I + + LY + G
Sbjct: 106 RELRDAGKIDKHTYRELYRKAKGGV 130
>gnl|CDD|107296 cd06301, PBP1_rhizopine_binding_like, Periplasmic binding proteins
specific to rhizopines. Periplasmic binding proteins
specific to rhizopines, which are simple sugar-like
compounds produced in the nodules induced by the
symbiotic root nodule bacteria, such as Rhizobium and
Sinorhizobium. Rhizopine-binding-like proteins from
other bacteria are also included. Two inositol based
rhizopine compounds are known to date:
L-3-O-methly-scyllo-inosamine (3-O-MSI) and
scyllo-inosamine. Bacterial strains that can metabolize
rhizopine have a greater competitive advantage in
nodulation and rhizopine synthesis is regulated by
NifA/NtrA regulatory transcription activators which are
maximally expressed at the onset of nitrogen fixation in
bacteroids. The members of this group belong to the
pentose/hexose sugar-binding protein family of the type
I periplasmic binding protein superfamily.
Length = 272
Score = 28.7 bits (65), Expect = 8.6
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 451 DLLRAGILLAE----------NVVVVNKELSNSAE-------EDTLADCNTIVAVQKLT 492
D + AG L AE NV ++ L SA+ E+ LA I V++ T
Sbjct: 104 DEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEVLAKYPDIKVVEEQT 162
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.405
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,093,947
Number of extensions: 3439567
Number of successful extensions: 3350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3349
Number of HSP's successfully gapped: 16
Length of query: 695
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 591
Effective length of database: 6,324,786
Effective search space: 3737948526
Effective search space used: 3737948526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (27.7 bits)