RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8620
(695 letters)
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M,
alpha member 1; potassium channel, membrane protein,
transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Length = 726
Score = 270 bits (690), Expect = 1e-80
Identities = 129/691 (18%), Positives = 226/691 (32%), Gaps = 117/691 (16%)
Query: 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVI 174
KH+VVC + +++ +FL +F H + V ++ + + + +V
Sbjct: 3 RKHIVVCGH-ITLESVSNFLKDFL-HKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVE 60
Query: 175 YIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQ 234
+ QGS L DLAR ++ A+AC +LA + +D A D I+R ++K++ P + Q
Sbjct: 61 FYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQ 120
Query: 235 IFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEG 286
+ + NK H+ K + +C ELK +A +C G ST++ L
Sbjct: 121 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFI-- 178
Query: 287 QISQEEWHRLYGRCSGNEIYHILLADS---RFFGEEGQISQEEWHRL---YGRCSGNEIY 340
+I ++ W + Y NE+Y L+ + F ++ + L S N
Sbjct: 179 KIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRES 238
Query: 341 HILLADSRFFGEYEG--------KSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCS 392
IL+ EG + + K D I+ G +
Sbjct: 239 RILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQ 298
Query: 393 TTCEIPIGIYRTQDMSSIESPQPRESNPRPSAHKADAPPSKLTRLAFYSVEFYLFSLDD- 451
+ P R M + + P+ P + + +F
Sbjct: 299 PSTLSPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAP 358
Query: 452 ----------LLRAGILLAENVVVVNKELSNSAEED-------------TLADCNTIVAV 488
A +L+ +VVV +SA + IV V
Sbjct: 359 KEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFV 418
Query: 489 QKLTSLA-----------FYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLA 537
+ L + S DL I L + V+++ N+ ++ +L
Sbjct: 419 GSIEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSAN-QNNIDDTSLQ 477
Query: 538 DCNTIVAVQTM--FKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEK-------- 587
D I+A + +F I + SQ M + D +H +
Sbjct: 478 DKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNI 537
Query: 588 ----------------KEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITF 631
++ + PFA G+ F+ S+LD+L+ + D ++T
Sbjct: 538 PIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTL 597
Query: 632 IRLLLGVDQAP------------GSGFLTSMKITKDD-----------------MWIRTY 662
IR L+ P G+ T + D Y
Sbjct: 598 IRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCY 657
Query: 663 GRLYQKLCSTTCEIPIGIYRTQDMSSIESPQ 693
G L+ K T + GIYR +D Q
Sbjct: 658 GDLFCKALKTYNMLCFGIYRLRDAHLSTPSQ 688
Score = 79.7 bits (195), Expect = 1e-15
Identities = 50/331 (15%), Positives = 96/331 (29%), Gaps = 32/331 (9%)
Query: 117 HVVVC---STTLHADTIMDFLNEFYAHPLLQN--YYVVLLSPMELDTTMRMILQVPIWAQ 171
HVVVC + + + + A + ++V + +E L
Sbjct: 379 HVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLH---NFP 435
Query: 172 RVIYIQGSCLKDGDLARARMNEAEACFVLAAR--NYSDKTAADEHTILRSWAVKDFAPDV 229
+V + G+ L DL +N + C +L+A N D + D+ IL S +K D
Sbjct: 436 KVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFD- 494
Query: 230 PQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVT------LLLHTSRG 283
+ + ++ + +L G + + +
Sbjct: 495 DSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQ 554
Query: 284 QEGQISQEEWHRLY----GRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEI 339
+ E + G + L++ + F + + L + E+
Sbjct: 555 DDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRT----LVTGGATPEL 610
Query: 340 YHILLADSRFFGEYEGKSFTYASFHSHRKYGM---KITKDDMWIRTYGRLYQKLCSTTCE 396
++ ++ G Y D YG L+ K T
Sbjct: 611 EALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNM 670
Query: 397 IPIGIYRTQDMSSIESPQPRES----NPRPS 423
+ GIYR +D Q + NP
Sbjct: 671 LCFGIYRLRDAHLSTPSQCTKRYVITNPPYE 701
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel,
gating ring, rossman fold, transport, ION trans; 3.10A
{Homo sapiens}
Length = 798
Score = 201 bits (512), Expect = 3e-55
Identities = 68/317 (21%), Positives = 121/317 (38%), Gaps = 55/317 (17%)
Query: 65 VPDIWPSQLYM--VIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCS 122
+PD + + + I L + + ++ ER+K GGSYS KH+VVC
Sbjct: 3 MPDEFRMKQIEDKLEEILSKLYHIENELARIKKLLGERKKYGGSYS--AVSGRKHIVVCG 60
Query: 123 TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLK 182
+++ +FL +F H + V ++ + + + +V + QGS L
Sbjct: 61 HI-TLESVSNFLKDFL-HKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLN 118
Query: 183 DGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKL 242
DLAR ++ A+AC +LA + +D A D I+R ++K++ P + Q+ + NK
Sbjct: 119 PHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKA 178
Query: 243 HVKFA--------EFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWH 294
H+ + +C ELK +A +C G ST++ L +I ++ W
Sbjct: 179 HLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFI--KIEEDTWQ 236
Query: 295 RLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYE 354
+ Y NE+Y L+ + +
Sbjct: 237 KYYLEGVSNEMYTEYLSSA---------------------------------------FV 257
Query: 355 GKSFTYASFHSHRKYGM 371
G SF K +
Sbjct: 258 GLSFPTVCELCFVKLKL 274
Score = 126 bits (317), Expect = 2e-30
Identities = 54/276 (19%), Positives = 94/276 (34%), Gaps = 61/276 (22%)
Query: 447 FSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSL 506
S DL I L + V+++ N+ ++ +L D I+A + S+ F
Sbjct: 469 LSRADLRAVNINLCDMCVILSAN-QNNIDDTSLQDKECILASLNIKSMQFDD-------- 519
Query: 507 DDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSN 566
G+L A + + S+ +++ + Q I ITEL +N
Sbjct: 520 ----SIGVLQANSQGFTPPGMDRSSPDNSP---VHGMLRQPSITTGVNIPIITELVNDTN 572
Query: 567 MRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKD 626
++F+ + + PFA G+ F+ S+LD+L+ + D
Sbjct: 573 VQFLDQ----------------DDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFND 616
Query: 627 YVITFIRLLLG------------VDQAPGSGFLTSMKITKDD-----------------M 657
++T IR L+ + A G+ T + D
Sbjct: 617 NILTLIRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLG 676
Query: 658 WIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQ 693
YG L+ K T + GIYR +D Q
Sbjct: 677 DGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQ 712
Score = 72.4 bits (176), Expect = 3e-13
Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 33/322 (10%)
Query: 127 ADTIMDFLNEFYAHPLLQNYY------VVLLSPMELDTTMRMILQVPIWAQRVIYIQGSC 180
+ + L N++ +V + +E L +V + G+
Sbjct: 412 VSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLH---NFPKVSILPGTP 468
Query: 181 LKDGDLARARMNEAEACFVLAAR--NYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRP 238
L DL +N + C +L+A N D + D+ IL S +K D +
Sbjct: 469 LSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFD-DSIGVLQAN 527
Query: 239 ENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTS------RGQEGQISQEE 292
+ ++ + +L G + + L + E
Sbjct: 528 SQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDDDDDPDTE 587
Query: 293 WHRLY----GRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSR 348
+ G + L++ + F + + L + E+ ++ ++
Sbjct: 588 LYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRT----LVTGGATPELEALIAEENA 643
Query: 349 FFGEYEGKSFTYASFHSHRKY---GMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQ 405
G Y D YG L+ K T + GIYR +
Sbjct: 644 LRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLR 703
Query: 406 DMSSIESPQPRES----NPRPS 423
D Q + NP
Sbjct: 704 DAHLSTPSQCTKRYVITNPPYE 725
Score = 42.3 bits (98), Expect = 5e-04
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 507 DDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSN 566
DL R I A+ +++ + + D + I+ V ++ + P IR IT++ Q N
Sbjct: 120 HDLARVKIESADACLILA---NKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHN 176
Query: 567 MRFMQFRAQDKYA 579
+ +
Sbjct: 177 KAHLLNIPSWNWK 189
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 98.3 bits (245), Expect = 2e-22
Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 30/282 (10%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMIC 80
L+++ A + G F + + Y+ VT +TVGYGD+ P + V +I
Sbjct: 24 LLLVLAVIIYGTAGFHFIEG--ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIV 81
Query: 81 VALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAH 140
+ + E+L + R+++ +HVV+C + + E
Sbjct: 82 LGIGTFAVAVERLLEFLINREQMKLMG-LIDVAKSRHVVICGWSESTLECLR---ELRGS 137
Query: 141 PLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVL 200
+ V+ + ++ G + DL +A + A A V
Sbjct: 138 EVF----VLAEDENVRK---------KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVD 184
Query: 201 AARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPEN--KLHVKFAEFIVCEDELKY 258
+D TI ++ V + R EN +L + A+ ++ +
Sbjct: 185 --------LESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISG 236
Query: 259 ALLANNCTCPGASTLVTLLLHTSRGQE-GQISQEEWHRLYGR 299
L++ + + V +L + ++ E +L G
Sbjct: 237 RLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGV 278
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 45.0 bits (107), Expect = 3e-06
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 42 HLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLA 94
+ + Y+ VT +TVGYGD+ P + +I + + E+L
Sbjct: 26 GESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLL 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-06
Identities = 56/358 (15%), Positives = 98/358 (27%), Gaps = 144/358 (40%)
Query: 309 LLADSRFFG------EEGQISQ---------EEWHRLYGRCSGNEIYHILLADSRFFGEY 353
L+ +F G E ++ Q E+ Y GN+I H L A + E
Sbjct: 60 LVG--KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDI-HALAA--KLLQEN 112
Query: 354 EGKSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESP 413
+ + K I+ Y + I +
Sbjct: 113 DTT----------------LVKTKELIKNY---IT-------------------ARIMAK 134
Query: 414 QPRESNPRPSA--HKADAPPSKLTRLAFYSV-------EFY------LFS-----LDDLL 453
+P SA ++L ++ + Y L+ + DL+
Sbjct: 135 RP-FDKKSNSALFRAVGEGNAQL-----VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 454 R--AGIL--LAENVVVVNKE----------LSNSA---EEDTLAD----CNTIVAVQKLT 492
+ A L L + K L N + ++D L C I +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG----VI 244
Query: 493 SLAFYSVEFYLFSLD-----DLLRAGILLAENVVV-VNKELSNSAEEDTLADCNTIVAVQ 546
LA Y V L L+ ++ +V V ++S E + A+
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES---FFVSVRKAIT 301
Query: 547 TMFKFFPGIRTITELSQSSNMRFMQFRAQDKY---ALHLSKMEKKEKERGSHI-SYMF 600
+F F+ R + Y +L S + + E + S M
Sbjct: 302 VLF-------------------FIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPSPML 339
Score = 43.1 bits (101), Expect = 3e-04
Identities = 86/535 (16%), Positives = 155/535 (28%), Gaps = 160/535 (29%)
Query: 88 TQFEQ---LAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQ 144
QF+Q L T E L G+ + H + DT + L++
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGN--------DIHALAAKLLQENDTTLV-----KTKELIK 124
Query: 145 NYY---VVLLSPMELDTTMRMILQVPIWAQRVIYI---QGS---CLKD--------GDLA 187
NY ++ P + + + V +++ I QG+ ++ L
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 188 RARMNEAEACFVLAARNYSDKTAADEHTI-LRSW-AVKDFAPDVPQY---VQIFRPENKL 242
+ + R D + + W PD Y + I P +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-YLLSIPISCPLIGV 243
Query: 243 HVKFAEFIV-CE------DELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHR 295
++ A ++V + EL+ L T + + + + S E +
Sbjct: 244 -IQLAHYVVTAKLLGFTPGELRSYLKG--ATGHSQGLVTAVAIAETD------SWESFFV 294
Query: 296 LYGRCSGNEIYHILLADSRFF-GEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYE 354
+ +L FF G Y S + +L DS E
Sbjct: 295 SV-----RKAITVL-----FFIGVRCY-------EAYPNTS---LPPSILEDSLENN--E 332
Query: 355 GKSFTYASFHSHRKYGM----KITKDDMWIRTYGRLYQKLCSTTC-EIP----IGIYRTQ 405
G S M +T++ + Q + T +P + I
Sbjct: 333 GVP-------SP----MLSISNLTQEQV---------QDYVNKTNSHLPAGKQVEI---- 368
Query: 406 DMSSIESPQ------PRES--NPRPSAHKADAPPSKL-TRLAF------YSVEF------ 444
S + + P +S + KA AP +R+ F +S F
Sbjct: 369 --SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 445 ----YLFS-----LDDLLRAGILLAEN---VVVVN-------KELSNSAEEDTLADCNTI 485
L DL++ + + V + + LS S E + DC
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER-IVDCIIR 485
Query: 486 VAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENV------VVVNKELSNSAEED 534
+ V+ T+ F + F G+L N V+V L + ++D
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 40.8 bits (95), Expect = 0.002
Identities = 59/362 (16%), Positives = 109/362 (30%), Gaps = 108/362 (29%)
Query: 5 DLHRAMQKSQSALSQQLMILSATFVC-GIQHFQRAGHRHLNLFQATYYVVVTFSTVGY-- 61
++ ++ + + + LS C I + Q +Y VVT +G+
Sbjct: 214 NILEWLENPSNTPDKDYL-LSIPISCPLIG-----------VIQLAHY-VVTAKLLGFTP 260
Query: 62 GDFVPDIWPSQLYMVIMICVALIVLPTQ----FEQLA-------FTWMERQKLGGSYSSH 110
G+ + A+ + T F F + +G +
Sbjct: 261 GELR-SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-F-----IG--VRCY 311
Query: 111 RAQSEKHVVVCSTTLHADTIMDFL--NEFYAHPLLQNYYVVLLSPMELDTTMRMI-LQVP 167
A +T+L + D L NE P+L + L+ ++ + +P
Sbjct: 312 EA-------YPNTSLPPSILEDSLENNEGVPSPMLS---ISNLTQEQVQDYVNKTNSHLP 361
Query: 168 IWAQRVIYIQGSCLKDG-----------DLARARMNEAEACFVLAARNYSDKTAADEHTI 216
A + + I S L +G L L R + D+ I
Sbjct: 362 --AGKQVEI--S-LVNGAKNLVVSGPPQSLYG---------LNLTLRKAKAPSGLDQSRI 407
Query: 217 LRSWAVKDFAPDVPQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTL 276
S F +++ + P + + A ++ +D L+ NN + +
Sbjct: 408 PFSERKLKF---SNRFLPVASPFHSHLLVPASDLINKD-----LVKNNVSFNAKD-IQIP 458
Query: 277 LLHTS-----RGQEGQISQE----------EWHRLYGRCSGNEIYHILLADSRFFGEEGQ 321
+ T R G IS+ +W + + HIL D FG G
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE----TTTQFKATHIL--D---FG-PGG 508
Query: 322 IS 323
S
Sbjct: 509 AS 510
Score = 31.6 bits (71), Expect = 1.1
Identities = 37/267 (13%), Positives = 69/267 (25%), Gaps = 72/267 (26%)
Query: 453 LRAGILLAENVVVVNKEL------SNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSL 506
L +L+ + +L + A + +L +F + +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG------KFLGY-V 68
Query: 507 DDLLRAGILLAENVVVVNKELSNSAEEDTLA--DCNTIVAVQTMFKFFPGIRTITELSQS 564
L+ + + V+ E L D + + A T +
Sbjct: 69 SSLVEPSKVGQFDQVL--NLCLTEFENCYLEGNDIHALAAK------LLQENDTTLVKTK 120
Query: 565 SNMRFMQFRAQDKY--ALHLSKMEKKEKERGSHISYMFRLPFAAGS-------VF----- 610
++ Y A ++K S +FR A G +F
Sbjct: 121 ELIK--------NYITARIMAK----RPFDKKSNSALFR---AVGEGNAQLVAIFGGQGN 165
Query: 611 SASMLDTL-----LYQAFVKDYVITFIRLLLGVDQAPGSG---FLTSMKITKDDMWIRTY 662
+ + L Y V D + L + + F + I + W+
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE---WLENP 222
Query: 663 GRL----YQKLCSTTCEIP-IGIYRTQ 684
Y L S P IG+ Q
Sbjct: 223 SNTPDKDY--LLSIPISCPLIGV--IQ 245
Score = 31.6 bits (71), Expect = 1.3
Identities = 46/285 (16%), Positives = 84/285 (29%), Gaps = 90/285 (31%)
Query: 358 FTYASFHSHRKYG---MKITKDD---MWIRTYG----RLYQKLCSTTCEIPIGIYRTQDM 407
+ A H YG + I ++ + I G R+ + + E + D
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV------DG 1699
Query: 408 SSIESPQPRESNPRPSAHKADAPPSKLTR------------LAFYSV--EFYLFSLDDLL 453
+E N +++ + L+ A + L D
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 454 -------------RAGILLAENVV-VVN---KELSNSAEEDTLADCNT-IVAVQKLTSLA 495
A ++ E++V VV + + D L N ++A+ A
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 496 FYSVEFYLFSLDDLL-RAGILLAENVVVVNKELSNSAEEDTLADCNTIV------AVQT- 547
+S E +L ++ R G V +VN N + V A+ T
Sbjct: 1820 SFSQE----ALQYVVERVGKRTGWLVEIVNY---NVENQ-------QYVAAGDLRALDTV 1865
Query: 548 --MFKFFPGIRTIT--ELSQSSNMRFMQFRAQDKYALHLSKMEKK 588
+ F ++ I EL +S L L ++E
Sbjct: 1866 TNVLNFI-KLQKIDIIELQKS---------------LSLEEVEGH 1894
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 44.8 bits (106), Expect = 4e-06
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 13 SQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQ 72
++ T + G + L A Y+ VVT +TVGYGDF P +
Sbjct: 3 KDKEFQVLFVLTILTLISGTIFYSTVEG--LRPIDALYFSVVTLTTVGYGDFSPQTDFGK 60
Query: 73 LYMVIMICVALIVLPTQFEQLAFTWMERQKLGG 105
++ ++ I + + ++ +LA L
Sbjct: 61 IFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 45.3 bits (107), Expect = 4e-06
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 42 HLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQ 101
L A Y+ VVT +TVG G+F P +++ ++ I + + ++ +LA
Sbjct: 47 GLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106
Query: 102 KLGG 105
L
Sbjct: 107 ILSN 110
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLY-MVIMIC-VALIVLPT 88
+ A ++ V T +TVGYGD P + +M + + L T
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVT 86
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 43.4 bits (102), Expect = 4e-05
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 14 QSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQL 73
++ T G + L A Y+ VVT +TVG G+F P ++
Sbjct: 24 DKEFQVLFVLTFLTLTSGTIFYSTV--EGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKV 81
Query: 74 YMVIMICVALIVLPTQFEQLAFTWMERQKLG 104
+ ++ I + + ++ +LA L
Sbjct: 82 FTILYIFIGIGLVFGFIHKLAVNVQLPSILS 112
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 42.2 bits (99), Expect = 9e-05
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLY-MVIMIC-VALIVLPTQFEQLAFTWMERQ 101
+A ++ V T +TVGYGD P +L +V+M+ + L T F E++
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99
Query: 102 KLGGSYSSHRAQSEKHVVVCSTTLHA 127
+ G +E+ + LH
Sbjct: 100 RRGHFVRHSEKAAEEAYTRTTRALHE 125
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 41.6 bits (98), Expect = 1e-04
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLY-MVIMIC-VALIVLPT 88
+A ++ T +TV YGD P +L +V+M+ + L T
Sbjct: 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-04
Identities = 88/622 (14%), Positives = 164/622 (26%), Gaps = 210/622 (33%)
Query: 128 DTIMDFLNEFYAHPLLQNYYVV-----LLSPMELDTTMRMILQVPIWAQRVIYIQGSCLK 182
D + F + F + V +LS E+D I+ + +
Sbjct: 20 DILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLF----- 68
Query: 183 DGDLARARMNEAEACFV--LAARNYSDKTAADEHTILRSWAVKDFAPDVP--QY------ 232
++ E FV + NY ++ + P + Y
Sbjct: 69 --WTLLSKQEEMVQKFVEEVLRINYK--------FLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 233 ----VQIFRPENKLHVKFAEFIVCEDELKYALL----ANNCT------CPGASTLVTLLL 278
Q+F K +V + +L+ ALL A N G + + +
Sbjct: 119 LYNDNQVFA---KYNVSRLQPY---LKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVC 171
Query: 279 HTSRGQ---EGQISQEEWHRLYGRC-SGNEIYHILLADSRFFGEEGQISQEEWHRLYGRC 334
+ + Q + +I W L C S + +L + + R
Sbjct: 172 LSYKVQCKMDFKIF---WLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 335 SGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMK-ITKDDMWIRTYGRLYQKLCS- 392
+ I L R + Y + ++ + C
Sbjct: 228 --HSIQAEL---RRLL--------------KSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 393 --TTCEIPI----GIYRTQDMSSIESPQ----------------------PRES---NPR 421
TT + T +S PRE NPR
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 422 P----SAHKADAPP----------SKLTRLAFYSVEFYLFSLD-DLLRA-----GILLAE 461
+ D KLT + S+ L+ R +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN----VLEPAEYRKMFDRLSVF-PP 383
Query: 462 NVVVVNKELS----NSAEEDTLADCNTIVAVQKLT--SLAFYSVEFYLFSLDDLLRAGIL 515
+ + LS + + D +V V KL SL + S+ + +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDV------MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 516 LAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQ 575
EN +++ + + D + ++
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPY----------------------------L 469
Query: 576 DKY-----ALHLSKMEKKEKERGSHISYMFRLPF-----------AAGSVFSA--SMLDT 617
D+Y HL +E E+ +FR+ F + ++A S+L+T
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMT------LFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 618 LL----YQAFVKDYVITFIRLL 635
L Y+ ++ D + RL+
Sbjct: 524 LQQLKFYKPYICDNDPKYERLV 545
Score = 42.1 bits (98), Expect = 6e-04
Identities = 44/327 (13%), Positives = 94/327 (28%), Gaps = 108/327 (33%)
Query: 123 TTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLK 182
TT + DFL+ + +++ + L+P E ++L+ + +
Sbjct: 271 TTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLK---YLD---------CR 314
Query: 183 DGDLARARMNEAEAC----FVLA----------AR-NYSDKTAADEHTILRSWAVKDFAP 227
DL R E L+ A + D+ T + ++ P
Sbjct: 315 PQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 228 DVPQ--YVQ--IFR-----PENKLHVKFAEFIVCEDEL------KYALLANNCTCPGAST 272
+ + + +F P L + + + I + + KY+L+ +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTIS 427
Query: 273 LVTLLLHTSRGQEGQISQEEWHRL----YG--RCSGNEIYHILLADSRFFGEEGQISQEE 326
+ ++ L E + HR Y + ++ D F+
Sbjct: 428 IPSIYLELKVKLENEY---ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---------- 474
Query: 327 WHRLYGRCSGNEI-YHI--------------LLADSRFFG---EYEGKSFTYAS-----F 363
H I +H+ + D RF ++ ++ +
Sbjct: 475 SH----------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 364 HSHRKYGMKITKDDMWIRTYGRLYQKL 390
+ Y I +D Y RL +
Sbjct: 525 QQLKFYKPYICDND---PKYERLVNAI 548
Score = 30.6 bits (68), Expect = 2.1
Identities = 37/230 (16%), Positives = 74/230 (32%), Gaps = 63/230 (27%)
Query: 64 FVPDIW-PSQLYMVI---MI--CVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKH 117
F P P+ L +I +I V ++V + + + +E+Q + S
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSL--VEKQPKESTISIP------- 429
Query: 118 VVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVL-------LSPMELDTT--------MRM 162
+++ + + NE+ H + ++Y + L P LD ++
Sbjct: 430 ------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 163 ILQVPIWAQ-RVIY-----IQGSCLKDGDLARARMNEAEACFVLAARNYSDK-TAADEHT 215
I R+++ ++ D A + L + Y D
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICDNDPKY 541
Query: 216 ILRSWAVKDFAPDVPQYVQIFRPENKLHV-KFAEFIVCEDELKYALLANN 264
A+ DF + + E L K+ D L+ AL+A +
Sbjct: 542 ERLVNAILDF---------LPKIEENLICSKYT------DLLRIALMAED 576
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 41.0 bits (96), Expect = 3e-04
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLY-MVIMIC-VALIVLPT 88
+ A ++ V T +TVGYGD P + +V+M+ + L
Sbjct: 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVF 130
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 41.8 bits (99), Expect = 3e-04
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLY-MVIMIC-VALIVLPT 88
++F A ++ VVT +TVGYGD VP ++ + +M+ ++ + L
Sbjct: 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLI 211
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 42.5 bits (100), Expect = 3e-04
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLY-MVIMIC-VALIVLPT 88
++ QA ++ VVT ST GYGD +P + ++ +M+ + + L
Sbjct: 161 SIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA 207
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 41.3 bits (96), Expect = 5e-04
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 41 RHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALI 84
N ++ Y+ ++ ST+G GD+VP +Q + +
Sbjct: 198 DDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITC 241
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 40.3 bits (94), Expect = 6e-04
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLY-MVIMIC-VALIVLPT 88
+A ++ V T +TVGYGD P +L +V+M+ + L T
Sbjct: 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 113
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 41.6 bits (97), Expect = 7e-04
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 4 NDLHRAMQKSQSALSQQLMILS---ATFVCGIQHFQRAGHRHL--NLFQATYYVVVTFST 58
L + ++ S L + L F + + ++ A ++ VV+ +T
Sbjct: 330 QILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTT 389
Query: 59 VGYGDFVPDIWPSQLY-MVIMIC-VALIVLPT 88
VGYGD VP ++ + I V I LP
Sbjct: 390 VGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV 421
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 38.9 bits (90), Expect = 0.004
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 1/101 (0%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMIC 80
+ R + A ++ V T +T+GYG +P + + +
Sbjct: 59 VTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEAL 118
Query: 81 VALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVC 121
++ L L + R G +SS S+
Sbjct: 119 CGMLGLAVAA-SLIYARFTRPTAGVLFSSRMVISDFEGKPT 158
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 38.3 bits (88), Expect = 0.006
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 42 HLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLY------MVIMICVALIVLPTQF----E 91
+ +A Y+V+VT +TVG+GD+V P Q + I + L +
Sbjct: 222 DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGN 281
Query: 92 QLAFTWMERQKLGGSYSSHRAQSEKHV 118
L + G ++ E
Sbjct: 282 WLRVVSRRTRAEMGGLTAQSNSLEVLF 308
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 37.4 bits (86), Expect = 0.013
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMIC 80
L+ + + + A A ++ V T +TVGYGD P + + I
Sbjct: 55 LLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIF 114
Query: 81 VALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVC 121
V + + AF M + K + +H V+
Sbjct: 115 VGMSSI-ALATGCAFIKMSQPK----KRAETLMFSEHAVIS 150
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 37.1 bits (85), Expect = 0.016
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKL 103
A ++ V T +TVGYGD P + + I V + + L F R +
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST-GLVFARFARPRA 154
Query: 104 GGSYSSHRAQSEKHVVVC 121
++ H + +
Sbjct: 155 KIMFARHAIVRPFNGRMT 172
>3jth_A Transcription activator HLYU; transcription factor, RTXA,
DNA-binding, transcription regulation; 2.00A {Vibrio
vulnificus}
Length = 98
Score = 31.0 bits (71), Expect = 0.25
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 4 NDLHRAMQKSQSALSQQLMIL 24
+L +Q SQSALSQ L L
Sbjct: 40 GELCAKLQLSQSALSQHLAWL 60
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif,
winged-helix fold, transcriptional R DNA binding,
transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Length = 102
Score = 30.7 bits (70), Expect = 0.35
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 4 NDLHRAMQKSQSALSQQLMIL 24
+L + + Q LSQQL +L
Sbjct: 40 GELEQQIGIGQPTLSQQLGVL 60
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding
transcriptional regulator, structural genomics, MCSG;
2.00A {Escherichia coli K12}
Length = 99
Score = 30.7 bits (70), Expect = 0.36
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 4 NDLHRAMQKSQSALSQQLMIL 24
+L R S SA SQ L +
Sbjct: 42 GELTRITGLSASATSQHLARM 62
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN
binding, transcription regulation; 2.00A {Bacillus
anthracis}
Length = 99
Score = 30.3 bits (69), Expect = 0.45
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 4 NDLHRAMQKSQSALSQQLMILSATFV 29
+ + ++ QS +SQ L + +
Sbjct: 45 TQIIQILKLPQSTVSQHLCKMRGKVL 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 31.6 bits (71), Expect = 0.72
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQK 102
A + + T +T+GYG V D P + ++++ V ++ F + + K
Sbjct: 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer,
NI(II) binding protein, DNA binding Pro transcription
regulator; NMR {Mycobacterium tuberculosis}
Length = 119
Score = 30.0 bits (68), Expect = 0.94
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 4 NDLHRAMQKSQSALSQQLMIL 24
DL A+ QSA+S QL +L
Sbjct: 49 TDLAEAIGMEQSAVSHQLRVL 69
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 30.5 bits (68), Expect = 1.6
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 44 NLFQATYYVVVTFSTVGYGDFVP-DIWPSQLYMVIMICVALIVLPTQFEQLAFTWMER 100
A + + T +T+GYG + P ++MV++ + ++ + M R
Sbjct: 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain,
zinc-binding, structural genomics; NMR {Arabidopsis
thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Length = 78
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 367 RKYGMKITKDDMWIRTYGRLYQKLCS 392
RKYG K+ K + + R+Y + C
Sbjct: 24 RKYGQKVVKGNPYPRSYYKCTTPGCG 49
>2kko_A Possible transcriptional regulatory protein (possibly
ARSR-family); NESG, DNA-binding, transcription
regulation, WHTH, homodimer; NMR {Mycobacterium bovis}
PDB: 3gw2_A
Length = 108
Score = 28.4 bits (64), Expect = 2.4
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 4 NDLHRAMQKSQSALSQQLMIL 24
+ A + + S L L
Sbjct: 42 EAIATATGMNLTTASANLQAL 62
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium,
transcriptional repressor, solution structure, STRU
genomics; NMR {Mycobacterium tuberculosis}
Length = 118
Score = 28.5 bits (64), Expect = 3.0
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 4 NDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYY 51
L + ++S +S L L CG+ G + Y
Sbjct: 38 GQLAAHLGLTRSNVSNHLSCLRG---CGLVVATYEG-------RQVRY 75
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation,
winged HTH protein, DNA binding, transcription
repressor; 1.70A {Synechococcus elongatus pcc 7942}
SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Length = 122
Score = 28.5 bits (64), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 4 NDLHRAMQKSQSALSQQLMIL 24
DL +A+ S+SA+S QL L
Sbjct: 63 GDLAQAIGVSESAVSHQLRSL 83
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional
regulation, winged HTH protein, transcription
repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5
PDB: 1r1v_A 2kjb_A 2kjc_A
Length = 106
Score = 28.0 bits (63), Expect = 3.7
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 4 NDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAG 39
+ + SQS +S QL +L + + +R G
Sbjct: 43 GHISHQLNLSQSNVSHQLKLLKS---VHLVKAKRQG 75
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD,
SOFT metal ION resistance, ARSR/SM family, DNA binding
protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5
PDB: 3f72_A
Length = 122
Score = 28.1 bits (63), Expect = 4.8
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 4 NDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAG 39
D+ + + + S L L G+ +F++ G
Sbjct: 60 CDIANILGVTIANASHHLRTLYK---QGVVNFRKEG 92
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7;
2.60A {Homo sapiens}
Length = 396
Score = 29.0 bits (65), Expect = 5.5
Identities = 10/70 (14%), Positives = 21/70 (30%)
Query: 572 FRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITF 631
FR + + M K + S + +S M + ++ +
Sbjct: 223 FRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPV 282
Query: 632 IRLLLGVDQA 641
+ +L DQ
Sbjct: 283 LANILEADQE 292
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 6.9
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 408 SSIESPQPRESNPRPSAHKADAPPSKLTRLAFYSVEFY---LFSLDDLLRAGILLAENVV 464
+++E ++ + + + P +L F ++ Y L + L +V
Sbjct: 762 TALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIV 821
Query: 465 VV 466
V
Sbjct: 822 VT 823
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 27.7 bits (61), Expect = 9.2
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 9/50 (18%)
Query: 289 SQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNE 338
++ W R LL R +I + ++H Y GN
Sbjct: 91 TKVLWMRRQRVL------RRLLRKYR---AAKKIDKHQYHEFYLGSKGNL 131
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 28.2 bits (63), Expect = 9.5
Identities = 10/70 (14%), Positives = 21/70 (30%)
Query: 572 FRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITF 631
FR + + M K + S + +S M + ++ +
Sbjct: 223 FRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPV 282
Query: 632 IRLLLGVDQA 641
+ +L DQ
Sbjct: 283 LANILEADQE 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.405
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,509,687
Number of extensions: 631357
Number of successful extensions: 1557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1525
Number of HSP's successfully gapped: 55
Length of query: 695
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 595
Effective length of database: 3,909,693
Effective search space: 2326267335
Effective search space used: 2326267335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.4 bits)