RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8620
         (695 letters)



>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
          {Archaeon Methanothermobacter thermautotrophicus
          [TaxId: 145262]}
          Length = 80

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 42 HLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLA 94
            +   + Y+  VT +TVGYGD+ P       + V +I + +       E+L 
Sbjct: 25 GESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL 77


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 10/66 (15%), Positives = 22/66 (33%)

Query: 21  LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMIC 80
           +                   R  +   A ++ V T +T+GYG  +P    +   + +   
Sbjct: 37  VTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEAL 96

Query: 81  VALIVL 86
             ++ L
Sbjct: 97  CGMLGL 102


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 33.4 bits (76), Expect = 0.021
 Identities = 13/66 (19%), Positives = 23/66 (34%)

Query: 21  LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMIC 80
           +       +  +     A         A ++ V T +TVGYGD  P    +     + I 
Sbjct: 38  VNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIF 97

Query: 81  VALIVL 86
           V +  +
Sbjct: 98  VGMSGI 103


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 33.0 bits (75), Expect = 0.022
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 21  LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMI- 79
           +++  +      +     G + +   +A ++ V T +TVGYGD  P     +   V+++ 
Sbjct: 18  VLLAGSYLAVLAERGA-PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV 76

Query: 80  -CVALIVLPTQFEQLAFTWMERQK 102
             +    L T      F   E+++
Sbjct: 77  AGITSFGLVTAALATWFVGREQER 100


>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein
          {Streptomyces coelicolor [TaxId: 1902]}
          Length = 57

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 21 LMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGY 61
          +++  +      +             +A ++   T +TVGY
Sbjct: 18 VLLAGSYLAVLAERGAPGAQLI-TYPRALWWACETATTVGY 57


>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 143

 Score = 27.0 bits (60), Expect = 4.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 314 RFFGEEGQISQEEWHRLYGRCSGNEI 339
           R   +EG +S  ++  LY +  G E 
Sbjct: 106 RELRDEGTLSSSQYRDLYDKAGGGEF 131


>d2d6ya2 a.121.1.1 (A:75-192) Putative regulator SCO4008
          {Streptomyces coelicolor [TaxId: 1902]}
          Length = 118

 Score = 26.0 bits (57), Expect = 7.4
 Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 62 GDFVPDIWPSQLYMVIM-ICVALIVLPTQFEQLA 94
          G     I    L  +++ +    +V+P     L 
Sbjct: 61 GVITDAIPAPDLLFLLVAMANWAVVVPQMKRILV 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,537,078
Number of extensions: 118588
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 8
Length of query: 695
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 603
Effective length of database: 1,144,436
Effective search space: 690094908
Effective search space used: 690094908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.6 bits)