BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8622
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPA 97
S L+C VC E + L E+VR+LPC+H +H CI PWL+ H +CP+CR++L ++ + P
Sbjct: 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPG 73
Query: 98 GAG 100
G
Sbjct: 74 LTG 76
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 83
+ C +C ++ + +LPC H++H PC+ WLQ GTCP+CR
Sbjct: 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 37 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 86
D ++C+VC + E R LP C H +H C++ WL H TCP+CR T+
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 83
C VC F + +R LPC+H +H C++ WL+ + TCPICR
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 41 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89
+C++C E VR+LPC H +H C++ WL + CPICR + ++
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 90
++ LQC +C E F EAV L C H + + CI W++ CPICR+ + S++
Sbjct: 51 ENELQCIICSEYFI--EAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 90
++ LQC +C E F EAV L C H + + CI W++ CPICR+ + S++
Sbjct: 51 ENELQCIICSEYFI--EAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 90
++ LQC +C E F EAV L C H + + CI W++ CPICR+ + S++
Sbjct: 62 ENELQCIICSEYFI--EAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPIC 82
C+VC E F + + PC H +H C+ WL++ CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 28 PALVQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 86
P L ++T D L+C +C+E F + + + C H Y + CI +L CP C T+
Sbjct: 11 PGLAVMKTIDDLLRCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 58 LPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPA 97
LPC H + CI+ W H CPICR + + + ES GP+
Sbjct: 30 LPCAHSFCQKCIDKWSDRHRNCPICRLQM-TGANESSGPS 68
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 341 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 29 ALVQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 84
A+ +V+ D+ L+C E D V C+H +H C+ W++ + CP+C+Q
Sbjct: 19 AICRVQVMDACLRCQA--ENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 21 VHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCP 80
+H TTR +++ + +L C +C F +A + C H + CI +L+ CP
Sbjct: 1 MHRTTR----IKITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCP 54
Query: 81 ICRQTLHS 88
IC +H
Sbjct: 55 ICDVQVHK 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 21 VHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCP 80
+H TTR +++ + +L C +C F +A + C H + CI +L+ CP
Sbjct: 1 MHRTTR----IKITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCP 54
Query: 81 ICRQTLHS 88
IC +H
Sbjct: 55 ICDVQVHK 62
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 27 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 30 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-CPICR 83
C +C E D+ V+ PC H T C+ W + G CP CR
Sbjct: 29 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 41 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88
+C +C E + LPC H + CI W++ + TCP+C+ + S
Sbjct: 7 RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 38 SNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGTCPIC 82
S C +C E V LPC H H C E L+ CP+C
Sbjct: 4 SQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 42 CSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGTCPIC 82
C +C E V LPC H H C E L+ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 19 GSVHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT 78
G+ + + P Q+R C VC ++ + ++ +PC H P L+
Sbjct: 4 GTTEDVSDLPVEEQLRRLQEERTCKVCMDK---EVSIVFIPCGHLVVCKDCAPSLR---K 57
Query: 79 CPICRQTLH 87
CPICR T+
Sbjct: 58 CPICRSTIK 66
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 88
S QC +C E L E V LPC+H PC + ++ CP CR+ + S
Sbjct: 14 SECQCGICME--ILVEPV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 8 FLVHHFSYSSLGSVHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHT 66
F V ++ +L + N A+ + D ++C T +E V C+H +H
Sbjct: 20 FEVKKWNAVALWAWDIVVDNCAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHF 79
Query: 67 PCIEPWLQLHGTCPI 81
CI WL+ CP+
Sbjct: 80 HCISRWLKTRQVCPL 94
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 31 VQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88
+++ + +L C +C F +A + C H + CI +L+ CPIC +H
Sbjct: 3 IKITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 58
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 8 FLVHHFSYSSLGSVHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHT 66
F V ++ +L + N A+ + D ++C T +E V C+H +H
Sbjct: 31 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 90
Query: 67 PCIEPWLQLHGTCPI 81
CI WL+ CP+
Sbjct: 91 HCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 8 FLVHHFSYSSLGSVHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHT 66
F V ++ +L + N A+ + D ++C T +E V C+H +H
Sbjct: 12 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 71
Query: 67 PCIEPWLQLHGTCPI 81
CI WL+ CP+
Sbjct: 72 HCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 8 FLVHHFSYSSLGSVHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHT 66
F V ++ +L + N A+ + D ++C T +E V C+H +H
Sbjct: 22 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 81
Query: 67 PCIEPWLQLHGTCPI 81
CI WL+ CP+
Sbjct: 82 HCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 8 FLVHHFSYSSLGSVHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHT 66
F V ++ +L + N A+ + D ++C T +E V C+H +H
Sbjct: 20 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 79
Query: 67 PCIEPWLQLHGTCPI 81
CI WL+ CP+
Sbjct: 80 HCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 60 CDHFYHTPCIEPWLQLHGTCPI 81
C+H +H CI WL+ CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 8 FLVHHFSYSSLGSVHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHT 66
F V ++ +L + N A+ + D ++C T +E V C+H +H
Sbjct: 4 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 63
Query: 67 PCIEPWLQLHGTCPI 81
CI WL+ CP+
Sbjct: 64 HCISRWLKTRQVCPL 78
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL--QLHGT-CPICRQ 84
L+C +C E FT ++ KL C H C+E L ++G CP C +
Sbjct: 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 40 LQCSVCWEQFTL----DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87
+ C +C + ++ + C H + + C+ L+ TCP CR+ ++
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 40 LQCSVCWEQFTL----DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87
+ C +C + ++ + C H + + C+ L+ TCP CR+ ++
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 40 LQCSVCWEQFTL----DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87
+ C +C + ++ + C H + + C+ L+ TCP CR+ ++
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 40 LQCSVCWEQFTL----DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87
+ C +C + ++ + C H + + C+ L+ TCP CR+ ++
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 40 LQCSVCWEQFTL----DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87
+ C +C + ++ + C H + + C+ L+ TCP CR+ ++
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,226,277
Number of Sequences: 62578
Number of extensions: 110724
Number of successful extensions: 225
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 46
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)