Query psy8622
Match_columns 101
No_of_seqs 213 out of 1453
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:31:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.8 4.7E-19 1.6E-23 98.4 6.0 65 35-99 11-75 (78)
2 2ep4_A Ring finger protein 24; 99.8 1.2E-18 4E-23 95.9 7.0 58 34-91 10-67 (74)
3 2kiz_A E3 ubiquitin-protein li 99.7 5.1E-18 1.7E-22 92.1 6.2 55 35-89 10-64 (69)
4 1x4j_A Ring finger protein 38; 99.7 2.8E-18 9.5E-23 94.6 5.0 54 36-89 20-73 (75)
5 1iym_A EL5; ring-H2 finger, ub 99.7 3.9E-18 1.3E-22 88.7 3.3 51 37-87 3-54 (55)
6 2l0b_A E3 ubiquitin-protein li 99.7 8.9E-18 3E-22 95.9 4.8 53 36-88 37-89 (91)
7 2djb_A Polycomb group ring fin 99.7 4.3E-17 1.5E-21 89.2 6.5 59 33-94 9-68 (72)
8 2d8t_A Dactylidin, ring finger 99.7 1.1E-17 3.9E-22 91.3 3.8 57 36-95 12-68 (71)
9 3ng2_A RNF4, snurf, ring finge 99.7 3.2E-17 1.1E-21 89.2 4.0 58 35-92 6-67 (71)
10 2ecn_A Ring finger protein 141 99.7 7.5E-17 2.6E-21 87.7 4.6 54 35-92 11-64 (70)
11 2ecm_A Ring finger and CHY zin 99.7 6.9E-17 2.3E-21 83.9 3.9 51 37-87 3-54 (55)
12 2ea6_A Ring finger protein 4; 99.7 8.7E-17 3E-21 86.9 4.3 54 35-88 11-68 (69)
13 2yur_A Retinoblastoma-binding 99.7 1.8E-16 6.2E-21 87.2 5.5 56 34-92 10-68 (74)
14 2ct2_A Tripartite motif protei 99.6 4.1E-16 1.4E-20 88.0 6.4 59 33-91 9-71 (88)
15 2xeu_A Ring finger protein 4; 99.6 8E-17 2.7E-21 85.9 3.3 55 38-92 2-60 (64)
16 1v87_A Deltex protein 2; ring- 99.6 2.9E-16 9.8E-21 92.7 5.9 52 38-89 24-95 (114)
17 2ecl_A Ring-box protein 2; RNF 99.6 2E-16 6.9E-21 88.5 4.8 52 38-89 14-77 (81)
18 1chc_A Equine herpes virus-1 r 99.6 1.9E-16 6.4E-21 85.6 4.2 50 37-88 3-52 (68)
19 2ecy_A TNF receptor-associated 99.6 3.8E-16 1.3E-20 84.0 4.8 53 35-90 11-64 (66)
20 2ysl_A Tripartite motif-contai 99.6 1.1E-15 3.6E-20 83.6 5.9 54 34-90 15-71 (73)
21 2csy_A Zinc finger protein 183 99.6 8.3E-16 2.9E-20 85.7 5.1 50 35-87 11-60 (81)
22 3dpl_R Ring-box protein 1; ubi 99.6 1.1E-15 3.8E-20 89.5 5.2 52 37-88 35-101 (106)
23 4ayc_A E3 ubiquitin-protein li 99.6 5E-16 1.7E-20 94.7 3.3 49 38-89 52-100 (138)
24 1t1h_A Gspef-atpub14, armadill 99.6 2E-15 7E-20 83.5 5.2 54 36-92 5-59 (78)
25 2ecw_A Tripartite motif-contai 99.6 3.9E-15 1.3E-19 83.2 6.2 56 35-93 15-76 (85)
26 3lrq_A E3 ubiquitin-protein li 99.6 9.9E-16 3.4E-20 88.7 3.0 55 35-92 18-74 (100)
27 2d8s_A Cellular modulator of i 99.6 4.5E-15 1.5E-19 82.8 5.4 54 36-90 12-72 (80)
28 2y43_A E3 ubiquitin-protein li 99.6 1E-15 3.5E-20 88.4 2.7 52 36-90 19-71 (99)
29 2ecv_A Tripartite motif-contai 99.6 5.3E-15 1.8E-19 82.7 5.5 56 35-93 15-76 (85)
30 2egp_A Tripartite motif-contai 99.6 9.1E-16 3.1E-20 85.0 2.1 56 35-93 8-70 (79)
31 3ztg_A E3 ubiquitin-protein li 99.5 7.4E-15 2.5E-19 83.6 5.1 50 35-87 9-61 (92)
32 2ysj_A Tripartite motif-contai 99.5 1.3E-14 4.6E-19 77.2 5.5 46 34-82 15-63 (63)
33 4ap4_A E3 ubiquitin ligase RNF 99.5 5.9E-15 2E-19 88.6 4.4 57 37-93 5-65 (133)
34 1g25_A CDK-activating kinase a 99.5 1.3E-14 4.3E-19 77.8 4.2 54 39-92 3-59 (65)
35 2ckl_A Polycomb group ring fin 99.5 1.3E-14 4.4E-19 84.9 4.4 53 34-89 10-63 (108)
36 3fl2_A E3 ubiquitin-protein li 99.5 1.1E-14 3.6E-19 87.2 4.1 49 37-88 50-99 (124)
37 2ecj_A Tripartite motif-contai 99.5 1.6E-14 5.6E-19 75.4 4.1 45 35-82 11-58 (58)
38 4a0k_B E3 ubiquitin-protein li 99.5 3.2E-15 1.1E-19 88.8 0.5 52 37-88 46-112 (117)
39 3hct_A TNF receptor-associated 99.5 2.1E-14 7.3E-19 85.3 3.4 54 34-90 13-67 (118)
40 2ct0_A Non-SMC element 1 homol 99.5 6.2E-14 2.1E-18 77.0 4.7 51 37-89 13-65 (74)
41 4ap4_A E3 ubiquitin ligase RNF 99.5 4.9E-14 1.7E-18 84.6 4.5 60 33-92 66-129 (133)
42 1jm7_A BRCA1, breast cancer ty 99.5 3.7E-14 1.3E-18 83.2 3.9 53 38-93 20-75 (112)
43 2ckl_B Ubiquitin ligase protei 99.5 4.1E-14 1.4E-18 88.3 3.7 50 36-88 51-102 (165)
44 3l11_A E3 ubiquitin-protein li 99.4 1.1E-14 3.6E-19 86.1 0.9 51 35-88 11-62 (115)
45 1rmd_A RAG1; V(D)J recombinati 99.4 4.2E-14 1.4E-18 83.6 3.4 52 37-91 21-73 (116)
46 2kr4_A Ubiquitin conjugation f 99.4 9.3E-14 3.2E-18 78.3 4.6 53 36-91 11-63 (85)
47 1z6u_A NP95-like ring finger p 99.4 6E-14 2E-18 86.6 4.0 49 38-89 77-126 (150)
48 1e4u_A Transcriptional repress 99.4 1.7E-13 5.8E-18 76.0 5.5 56 36-92 8-66 (78)
49 2kre_A Ubiquitin conjugation f 99.4 2.2E-13 7.6E-18 78.9 5.5 55 35-92 25-79 (100)
50 1wgm_A Ubiquitin conjugation f 99.4 3.8E-13 1.3E-17 77.6 6.1 53 36-91 19-72 (98)
51 3knv_A TNF receptor-associated 99.4 1.8E-13 6E-18 83.8 4.1 51 34-87 26-77 (141)
52 1bor_A Transcription factor PM 99.4 7.5E-14 2.6E-18 72.8 0.9 48 36-89 3-50 (56)
53 2vje_A E3 ubiquitin-protein li 99.4 2.9E-13 9.9E-18 72.4 2.8 48 37-87 6-56 (64)
54 2y1n_A E3 ubiquitin-protein li 99.4 5.3E-13 1.8E-17 92.9 4.5 56 38-96 331-387 (389)
55 1jm7_B BARD1, BRCA1-associated 99.3 1.5E-13 5.2E-18 81.4 1.0 51 35-90 18-69 (117)
56 2vje_B MDM4 protein; proto-onc 99.3 5.9E-13 2E-17 71.0 2.7 48 37-87 5-55 (63)
57 3hcs_A TNF receptor-associated 99.3 9.3E-13 3.2E-17 82.5 3.4 54 34-90 13-67 (170)
58 4ic3_A E3 ubiquitin-protein li 99.3 1.3E-13 4.6E-18 75.7 -0.6 47 35-88 20-67 (74)
59 2yu4_A E3 SUMO-protein ligase 99.2 3.3E-12 1.1E-16 73.0 3.1 50 37-89 5-64 (94)
60 2c2l_A CHIP, carboxy terminus 99.2 4.5E-12 1.5E-16 84.2 4.1 53 36-91 205-258 (281)
61 2ecg_A Baculoviral IAP repeat- 99.2 2.7E-12 9.1E-17 70.5 0.6 46 36-88 22-68 (75)
62 2ea5_A Cell growth regulator w 99.2 2.9E-11 9.8E-16 65.3 4.6 48 35-89 11-59 (68)
63 2f42_A STIP1 homology and U-bo 99.2 2.6E-11 8.8E-16 76.7 4.1 53 36-91 103-156 (179)
64 1wim_A KIAA0161 protein; ring 99.1 4.8E-11 1.7E-15 68.0 2.8 52 38-89 4-67 (94)
65 3htk_C E3 SUMO-protein ligase 99.1 1.3E-10 4.5E-15 77.1 4.7 57 33-91 175-235 (267)
66 2yho_A E3 ubiquitin-protein li 99.0 2.9E-11 9.9E-16 67.1 0.8 46 37-89 16-62 (79)
67 3k1l_B Fancl; UBC, ring, RWD, 99.0 3.9E-11 1.3E-15 82.3 1.5 57 35-91 304-376 (381)
68 1vyx_A ORF K3, K3RING; zinc-bi 99.0 1.6E-10 5.4E-15 60.9 3.3 49 36-87 3-58 (60)
69 2bay_A PRE-mRNA splicing facto 99.0 3.2E-10 1.1E-14 59.9 3.2 54 39-95 3-57 (61)
70 3t6p_A Baculoviral IAP repeat- 98.9 2.1E-10 7.1E-15 79.1 1.0 46 36-88 292-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.7 8.9E-09 3.1E-13 58.8 4.0 46 41-88 3-49 (101)
72 3nw0_A Non-structural maintena 98.4 4.1E-07 1.4E-11 59.8 5.6 49 38-89 179-230 (238)
73 2ko5_A Ring finger protein Z; 97.3 0.0013 4.5E-08 37.0 6.5 62 31-96 20-81 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.9 0.00077 2.6E-08 38.1 3.2 35 38-72 2-36 (101)
75 2lri_C Autoimmune regulator; Z 96.1 0.0067 2.3E-07 32.0 3.2 46 36-85 9-59 (66)
76 1wil_A KIAA1045 protein; ring 95.8 0.032 1.1E-06 30.8 5.3 33 36-72 12-47 (89)
77 2k16_A Transcription initiatio 94.4 0.019 6.4E-07 30.7 1.7 53 34-87 13-70 (75)
78 2l5u_A Chromodomain-helicase-D 93.9 0.048 1.6E-06 28.1 2.6 46 35-84 7-57 (61)
79 3m62_A Ubiquitin conjugation f 93.7 0.074 2.5E-06 41.2 4.3 55 35-92 887-942 (968)
80 1we9_A PHD finger family prote 92.8 0.072 2.5E-06 27.5 2.2 50 36-85 3-58 (64)
81 1fp0_A KAP-1 corepressor; PHD 92.0 0.14 4.7E-06 28.5 2.8 50 33-86 19-73 (88)
82 2vpb_A Hpygo1, pygopus homolog 91.5 0.2 7E-06 26.1 3.0 35 36-70 5-41 (65)
83 1weo_A Cellulose synthase, cat 91.4 1.1 3.7E-05 24.9 6.2 50 38-87 15-69 (93)
84 1f62_A Transcription factor WS 91.1 0.093 3.2E-06 25.8 1.4 43 41-84 2-49 (51)
85 1mm2_A MI2-beta; PHD, zinc fin 90.7 0.03 1E-06 28.9 -0.7 48 35-85 5-56 (61)
86 3u5n_A E3 ubiquitin-protein li 90.4 0.048 1.6E-06 34.7 -0.1 48 36-87 4-56 (207)
87 2l43_A N-teminal domain from h 90.3 0.23 8E-06 27.4 2.7 54 35-88 21-78 (88)
88 1wep_A PHF8; structural genomi 90.1 0.28 9.4E-06 26.4 2.8 50 36-86 9-64 (79)
89 2dar_A PDZ and LIM domain prot 90.0 0.46 1.6E-05 25.8 3.8 42 36-88 22-63 (90)
90 3o36_A Transcription intermedi 89.4 0.085 2.9E-06 32.9 0.4 46 38-87 3-53 (184)
91 1z2q_A LM5-1; membrane protein 89.3 0.69 2.4E-05 25.1 4.1 54 35-88 17-79 (84)
92 2cs3_A Protein C14ORF4, MY039 89.2 0.84 2.9E-05 24.9 4.2 39 36-75 12-52 (93)
93 2puy_A PHD finger protein 21A; 88.1 0.05 1.7E-06 27.8 -1.1 46 37-86 3-53 (60)
94 1xwh_A Autoimmune regulator; P 88.1 0.1 3.5E-06 27.2 0.1 46 36-85 5-55 (66)
95 2yql_A PHD finger protein 21A; 87.7 0.06 2.1E-06 27.1 -0.9 45 36-84 6-55 (56)
96 1y02_A CARP2, FYVE-ring finger 87.3 0.085 2.9E-06 31.0 -0.5 50 36-85 16-66 (120)
97 2kgg_A Histone demethylase jar 87.2 0.57 2E-05 23.0 2.7 43 41-83 4-52 (52)
98 2lv9_A Histone-lysine N-methyl 86.7 0.19 6.7E-06 28.2 0.8 46 37-84 26-75 (98)
99 2yw8_A RUN and FYVE domain-con 86.7 0.49 1.7E-05 25.6 2.4 52 36-87 16-74 (82)
100 3i2d_A E3 SUMO-protein ligase 86.5 0.77 2.6E-05 31.9 3.8 50 39-90 249-302 (371)
101 1joc_A EEA1, early endosomal a 86.3 0.45 1.5E-05 27.9 2.2 34 38-71 68-102 (125)
102 1x4u_A Zinc finger, FYVE domai 86.2 0.56 1.9E-05 25.5 2.5 36 36-71 11-47 (84)
103 4fo9_A E3 SUMO-protein ligase 86.1 0.82 2.8E-05 31.7 3.7 50 39-90 215-268 (360)
104 2d8v_A Zinc finger FYVE domain 86.0 0.57 2E-05 24.5 2.3 34 35-72 4-38 (67)
105 3t7l_A Zinc finger FYVE domain 85.9 0.83 2.8E-05 25.2 3.1 51 37-87 18-75 (90)
106 2yt5_A Metal-response element- 85.9 0.46 1.6E-05 24.4 1.9 50 37-86 4-62 (66)
107 1z60_A TFIIH basal transcripti 85.8 0.28 9.6E-06 25.1 1.0 43 40-82 16-58 (59)
108 1wev_A Riken cDNA 1110020M19; 85.4 0.14 4.6E-06 28.3 -0.3 56 38-93 15-80 (88)
109 2ysm_A Myeloid/lymphoid or mix 85.2 0.21 7.2E-06 28.5 0.4 38 36-73 4-41 (111)
110 1wem_A Death associated transc 85.1 1.5 5.1E-05 23.1 3.8 47 38-86 15-71 (76)
111 2e6r_A Jumonji/ARID domain-con 85.0 0.19 6.5E-06 28.0 0.2 50 35-85 12-66 (92)
112 2xb1_A Pygopus homolog 2, B-ce 84.9 0.53 1.8E-05 26.8 2.0 49 39-87 3-63 (105)
113 2lbm_A Transcriptional regulat 84.9 1.8 6.3E-05 26.0 4.5 46 35-84 59-116 (142)
114 1vfy_A Phosphatidylinositol-3- 84.8 0.83 2.9E-05 24.1 2.7 32 40-71 12-44 (73)
115 3v43_A Histone acetyltransfera 84.2 0.22 7.5E-06 28.6 0.2 44 41-84 63-111 (112)
116 1wfk_A Zinc finger, FYVE domai 83.0 0.94 3.2E-05 24.9 2.5 52 37-88 7-66 (88)
117 4gne_A Histone-lysine N-methyl 82.6 1.3 4.3E-05 25.4 3.0 46 35-86 11-63 (107)
118 3lqh_A Histone-lysine N-methyl 80.9 1 3.5E-05 28.2 2.3 48 39-86 2-64 (183)
119 3zyq_A Hepatocyte growth facto 80.8 1.7 5.9E-05 27.9 3.5 48 39-86 164-220 (226)
120 2ku3_A Bromodomain-containing 80.8 2.5 8.5E-05 22.2 3.6 49 36-84 13-65 (71)
121 2a20_A Regulating synaptic mem 80.6 0.093 3.2E-06 26.9 -2.0 49 36-84 6-59 (62)
122 1wen_A Inhibitor of growth fam 80.2 1 3.5E-05 23.7 1.9 46 36-86 13-66 (71)
123 1dvp_A HRS, hepatocyte growth 80.1 1.9 6.5E-05 27.5 3.5 34 38-71 160-194 (220)
124 1iml_A CRIP, cysteine rich int 80.1 0.62 2.1E-05 24.3 1.0 41 39-83 27-68 (76)
125 3mjh_B Early endosome antigen 80.0 0.45 1.5E-05 21.6 0.4 15 38-52 4-18 (34)
126 2co8_A NEDD9 interacting prote 79.8 1.6 5.3E-05 23.2 2.6 42 38-89 14-55 (82)
127 1x62_A C-terminal LIM domain p 79.1 1.6 5.4E-05 22.9 2.5 39 38-87 14-52 (79)
128 3ql9_A Transcriptional regulat 78.8 4.1 0.00014 24.1 4.4 46 35-84 53-110 (129)
129 1wee_A PHD finger family prote 78.2 1.6 5.6E-05 22.8 2.3 50 36-86 13-67 (72)
130 3asl_A E3 ubiquitin-protein li 77.6 0.3 1E-05 25.8 -0.8 43 41-84 20-68 (70)
131 2cu8_A Cysteine-rich protein 2 77.4 1.2 4E-05 23.2 1.6 40 39-88 9-48 (76)
132 1weu_A Inhibitor of growth fam 77.4 3.6 0.00012 22.7 3.7 45 37-86 34-86 (91)
133 2o35_A Hypothetical protein DU 76.9 1.1 3.6E-05 25.4 1.4 12 63-74 42-53 (105)
134 3fyb_A Protein of unknown func 76.9 1.1 3.7E-05 25.4 1.4 12 63-74 41-52 (104)
135 1m3v_A FLIN4, fusion of the LI 76.1 2.4 8.2E-05 24.3 2.8 54 39-92 32-85 (122)
136 2ro1_A Transcription intermedi 76.1 0.37 1.3E-05 30.2 -0.8 45 39-86 2-50 (189)
137 2e6s_A E3 ubiquitin-protein li 75.6 0.38 1.3E-05 25.9 -0.7 43 41-84 28-76 (77)
138 1wew_A DNA-binding family prot 74.6 5.4 0.00018 21.1 3.8 49 36-86 13-73 (78)
139 2dj7_A Actin-binding LIM prote 74.5 2.6 8.9E-05 22.3 2.5 40 38-87 14-53 (80)
140 1zbd_B Rabphilin-3A; G protein 74.2 1.4 4.8E-05 26.2 1.5 49 37-85 53-107 (134)
141 3shb_A E3 ubiquitin-protein li 73.5 0.33 1.1E-05 26.1 -1.3 26 59-84 46-76 (77)
142 2ri7_A Nucleosome-remodeling f 72.5 2.7 9.3E-05 25.6 2.6 50 36-86 5-60 (174)
143 1x64_A Alpha-actinin-2 associa 72.4 7.3 0.00025 20.8 4.1 41 37-88 23-63 (89)
144 2kwj_A Zinc finger protein DPF 72.3 0.27 9.1E-06 28.4 -2.0 46 41-87 60-110 (114)
145 3a1b_A DNA (cytosine-5)-methyl 71.9 4.7 0.00016 24.7 3.4 35 36-74 76-113 (159)
146 2d8z_A Four and A half LIM dom 71.7 3.8 0.00013 20.7 2.7 37 40-87 6-42 (70)
147 3mpx_A FYVE, rhogef and PH dom 71.1 0.84 2.9E-05 31.7 0.0 50 37-86 373-430 (434)
148 2xjy_A Rhombotin-2; oncoprotei 71.0 5.1 0.00017 22.9 3.4 50 39-88 29-78 (131)
149 1nyp_A Pinch protein; LIM doma 69.7 2.5 8.6E-05 21.2 1.7 38 40-88 6-43 (66)
150 2d8y_A Eplin protein; LIM doma 68.9 7.3 0.00025 20.8 3.6 40 39-88 15-54 (91)
151 2cor_A Pinch protein; LIM doma 68.9 3.2 0.00011 21.8 2.0 39 39-88 15-53 (79)
152 2jne_A Hypothetical protein YF 67.3 2.5 8.4E-05 23.8 1.4 42 38-87 31-72 (101)
153 2zet_C Melanophilin; complex, 67.1 2.9 9.8E-05 25.4 1.8 46 38-84 67-116 (153)
154 1zfo_A LAsp-1; LIM domain, zin 66.5 1.5 5.1E-05 19.1 0.3 27 40-68 4-30 (31)
155 1x63_A Skeletal muscle LIM-pro 66.1 4.1 0.00014 21.3 2.1 40 40-88 16-55 (82)
156 2d8x_A Protein pinch; LIM doma 65.3 3.3 0.00011 21.0 1.6 27 40-69 6-32 (70)
157 1wd2_A Ariadne-1 protein homol 65.1 0.37 1.3E-05 24.6 -2.1 35 40-74 7-46 (60)
158 2cur_A Skeletal muscle LIM-pro 64.1 3.6 0.00012 20.7 1.6 10 41-50 7-16 (69)
159 1wyh_A SLIM 2, skeletal muscle 63.6 4.6 0.00016 20.5 2.0 39 40-87 6-44 (72)
160 3ask_A E3 ubiquitin-protein li 63.5 1.3 4.6E-05 28.7 -0.2 43 41-84 176-224 (226)
161 1g47_A Pinch protein; LIM doma 63.1 5.9 0.0002 20.3 2.4 41 39-88 11-51 (77)
162 1x68_A FHL5 protein; four-and- 62.8 4.1 0.00014 21.0 1.7 39 40-87 6-46 (76)
163 2xqn_T Testin, TESS; metal-bin 62.8 12 0.0004 21.2 3.8 46 39-88 30-75 (126)
164 1x4k_A Skeletal muscle LIM-pro 62.1 5.8 0.0002 20.0 2.2 39 40-87 6-44 (72)
165 1x4l_A Skeletal muscle LIM-pro 60.6 6.2 0.00021 20.0 2.2 39 40-87 6-46 (72)
166 2lq6_A Bromodomain-containing 60.0 5.5 0.00019 21.7 1.9 36 36-72 14-51 (87)
167 1x4i_A Inhibitor of growth pro 59.8 1.7 5.8E-05 22.8 -0.2 27 62-88 30-58 (70)
168 2cuq_A Four and A half LIM dom 58.9 4.9 0.00017 20.8 1.6 37 40-87 16-52 (80)
169 2jvx_A NF-kappa-B essential mo 58.2 2.6 8.8E-05 18.1 0.3 11 78-88 5-15 (28)
170 2ct7_A Ring finger protein 31; 57.9 3.2 0.00011 22.4 0.8 43 42-84 28-75 (86)
171 1v6g_A Actin binding LIM prote 57.8 3.7 0.00013 21.5 1.0 37 40-87 16-52 (81)
172 3o70_A PHD finger protein 13; 57.7 4.8 0.00017 20.8 1.4 47 36-84 16-66 (68)
173 1a7i_A QCRP2 (LIM1); LIM domai 57.6 2.9 9.8E-05 21.9 0.5 28 40-69 8-35 (81)
174 1wig_A KIAA1808 protein; LIM d 57.2 4.6 0.00016 20.8 1.3 9 41-49 7-15 (73)
175 1wfl_A Zinc finger protein 216 57.0 20 0.00069 19.0 4.3 27 38-66 24-50 (74)
176 2jmo_A Parkin; IBR, E3 ligase, 56.6 0.56 1.9E-05 25.3 -2.5 14 59-72 55-68 (80)
177 2jrp_A Putative cytoplasmic pr 56.3 6 0.0002 21.5 1.6 10 40-49 3-12 (81)
178 2gmg_A Hypothetical protein PF 55.8 2.1 7.3E-05 24.4 -0.2 26 59-89 72-97 (105)
179 2ku7_A MLL1 PHD3-CYP33 RRM chi 54.9 20 0.00069 20.2 4.0 27 60-86 8-45 (140)
180 2dlo_A Thyroid receptor-intera 54.7 4.5 0.00016 21.1 1.0 38 39-87 15-52 (81)
181 1x3h_A Leupaxin; paxillin fami 54.4 4.7 0.00016 20.9 1.0 38 40-88 16-53 (80)
182 2jtn_A LIM domain-binding prot 52.9 27 0.00093 21.1 4.5 27 61-89 106-132 (182)
183 3f6q_B LIM and senescent cell 52.5 6.8 0.00023 19.6 1.5 42 39-89 11-52 (72)
184 3c6w_A P28ING5, inhibitor of g 50.6 2.2 7.5E-05 21.5 -0.7 43 37-84 7-57 (59)
185 2l4z_A DNA endonuclease RBBP8, 50.4 24 0.00083 20.1 3.8 39 39-87 61-99 (123)
186 2pv0_B DNA (cytosine-5)-methyl 50.2 16 0.00053 25.6 3.3 34 36-73 90-126 (386)
187 2vnf_A ING 4, P29ING4, inhibit 50.1 2.2 7.4E-05 21.6 -0.7 43 37-84 8-58 (60)
188 3o7a_A PHD finger protein 13 v 49.7 2.1 7.3E-05 20.8 -0.8 40 44-84 8-51 (52)
189 2egq_A FHL1 protein; LIM domai 49.5 7.5 0.00026 19.9 1.3 41 40-89 16-59 (77)
190 1rut_X Flinc4, fusion protein 48.5 10 0.00034 23.3 2.0 49 39-88 32-81 (188)
191 1r79_A Diacylglycerol kinase, 47.7 17 0.00059 19.6 2.6 40 39-81 38-80 (84)
192 2g6q_A Inhibitor of growth pro 47.4 2.6 9E-05 21.5 -0.7 45 37-84 9-59 (62)
193 2l3k_A Rhombotin-2, linker, LI 46.3 6.1 0.00021 22.5 0.7 45 38-85 35-79 (123)
194 3kv5_D JMJC domain-containing 45.2 18 0.00062 26.0 3.1 49 36-85 34-88 (488)
195 2cup_A Skeletal muscle LIM-pro 44.8 15 0.00052 19.8 2.2 46 39-88 33-78 (101)
196 3kqi_A GRC5, PHD finger protei 43.2 29 0.001 17.9 3.1 46 40-86 11-62 (75)
197 2ehe_A Four and A half LIM dom 41.7 11 0.00038 19.5 1.3 39 40-87 16-54 (82)
198 2jmi_A Protein YNG1, ING1 homo 41.4 9.3 0.00032 21.0 0.9 48 34-84 21-75 (90)
199 1wg2_A Zinc finger (AN1-like) 40.5 38 0.0013 17.4 3.2 27 38-66 14-40 (64)
200 2kpi_A Uncharacterized protein 39.7 15 0.00052 18.2 1.5 13 38-50 9-21 (56)
201 2rgt_A Fusion of LIM/homeobox 39.4 37 0.0013 20.2 3.5 44 39-87 33-76 (169)
202 2iyb_E Testin, TESS, TES; LIM 36.5 13 0.00045 18.4 1.0 40 40-88 3-44 (65)
203 2rsd_A E3 SUMO-protein ligase 35.9 12 0.00041 19.1 0.8 46 37-84 8-64 (68)
204 1j2o_A FLIN2, fusion of rhombo 35.6 22 0.00076 19.8 2.0 36 39-75 30-66 (114)
205 2csz_A Synaptotagmin-like prot 35.0 53 0.0018 17.4 3.5 34 36-69 22-57 (76)
206 1l8d_A DNA double-strand break 34.2 9.8 0.00034 21.3 0.3 13 76-88 47-59 (112)
207 1wfh_A Zinc finger (AN1-like) 32.4 55 0.0019 16.8 3.4 27 38-66 14-40 (64)
208 2fiy_A Protein FDHE homolog; F 30.8 4 0.00014 27.6 -2.0 47 37-85 180-231 (309)
209 1lv3_A Hypothetical protein YA 30.6 21 0.00073 18.6 1.2 9 78-86 11-19 (68)
210 4gut_A Lysine-specific histone 28.6 48 0.0016 25.1 3.2 37 39-75 13-56 (776)
211 2apo_B Ribosome biogenesis pro 28.1 46 0.0016 16.8 2.2 21 76-96 18-38 (60)
212 1loi_A Cyclic 3',5'-AMP specif 26.2 2.9 9.8E-05 17.1 -2.1 11 63-73 6-16 (26)
213 3vhs_A ATPase wrnip1; zinc fin 25.9 17 0.00059 15.1 0.2 10 78-87 8-17 (29)
214 2pk7_A Uncharacterized protein 24.5 14 0.00047 19.3 -0.2 12 76-87 8-19 (69)
215 1x61_A Thyroid receptor intera 24.3 74 0.0025 15.6 4.0 13 61-73 53-65 (72)
216 2hf1_A Tetraacyldisaccharide-1 23.7 23 0.0008 18.3 0.6 13 77-89 9-21 (68)
217 2jr6_A UPF0434 protein NMA0874 23.6 24 0.00081 18.3 0.6 14 76-89 8-21 (68)
218 2lcq_A Putative toxin VAPC6; P 23.5 16 0.00056 21.9 -0.1 22 59-86 137-158 (165)
219 2vrw_B P95VAV, VAV1, proto-onc 22.7 64 0.0022 22.0 2.8 37 35-71 353-391 (406)
220 1wff_A Riken cDNA 2810002D23 p 22.5 1E+02 0.0035 16.7 4.5 29 37-66 23-51 (85)
221 2ctu_A Zinc finger protein 483 22.4 31 0.001 16.5 0.9 15 38-52 17-31 (73)
222 2jny_A Uncharacterized BCR; st 22.2 13 0.00045 19.2 -0.6 11 77-87 11-21 (67)
223 3epz_A DNA (cytosine-5)-methyl 21.7 61 0.0021 21.5 2.3 17 75-91 17-33 (268)
224 2js4_A UPF0434 protein BB2007; 21.7 25 0.00086 18.3 0.4 14 76-89 8-21 (70)
225 1b8t_A Protein (CRP1); LIM dom 21.6 1.3E+02 0.0044 18.2 3.8 35 38-74 33-67 (192)
226 1wfp_A Zinc finger (AN1-like) 21.3 1E+02 0.0035 16.2 4.4 29 36-66 22-50 (74)
227 1x6a_A LIMK-2, LIM domain kina 20.2 99 0.0034 15.6 4.0 10 41-50 17-26 (81)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=4.7e-19 Score=98.37 Aligned_cols=65 Identities=42% Similarity=1.019 Sum_probs=54.4
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcccCCCCCC
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGA 99 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 99 (101)
.......|+||++.+..+..+..++|+|.||..||.+|+..+..||+||..+...+.....+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 75 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLT 75 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCSSCT
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCCCCC
Confidence 34556789999999987777788899999999999999999999999999998777665554443
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=95.86 Aligned_cols=58 Identities=26% Similarity=0.736 Sum_probs=49.8
Q ss_pred cCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCc
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 91 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 91 (101)
........|+||++.+..+..+..++|+|.||..||.+|+..+.+||+||..+.....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3445577899999999877777888999999999999999998999999999965443
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=92.10 Aligned_cols=55 Identities=35% Similarity=0.971 Sum_probs=48.2
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
..+....|+||++.+..+..+..++|+|.||..||..|+..+.+||+||..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 4455678999999997777788899999999999999999999999999998654
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=94.64 Aligned_cols=54 Identities=35% Similarity=0.889 Sum_probs=48.0
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
..+...|+||++.+..++.+..++|+|.||..||.+|+..+.+||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 445678999999998777788899999999999999999999999999988654
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.71 E-value=3.9e-18 Score=88.71 Aligned_cols=51 Identities=41% Similarity=1.003 Sum_probs=45.3
Q ss_pred CCccccccccccccCCCceEEeC-CCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
++...|+||++.+..++.+..++ |+|.||..|+.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999998777778887 9999999999999999999999998874
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-18 Score=95.90 Aligned_cols=53 Identities=34% Similarity=1.025 Sum_probs=47.2
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
......|+||++.+..++.+..++|+|.||..||..|+..+.+||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567899999999877778889999999999999999999999999998854
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=89.19 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=48.2
Q ss_pred ccCCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcCCcccccccccccCCcccC
Q psy8622 33 VRTDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESL 94 (101)
Q Consensus 33 ~~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 94 (101)
....++...|+||++.+..+ +.+ +|+|.||..||..|+.....||+||..+...+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 34456678999999998643 555 999999999999999988999999999977655543
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=91.30 Aligned_cols=57 Identities=23% Similarity=0.512 Sum_probs=47.2
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcccCC
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLG 95 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~ 95 (101)
..+...|+||++.+..+ +.++|+|.||..||..|+.....||+||..+.......+.
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p~ 68 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGP 68 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCSC
T ss_pred CCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCCC
Confidence 44567899999998543 7789999999999999999889999999999766544433
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.68 E-value=3.2e-17 Score=89.24 Aligned_cols=58 Identities=19% Similarity=0.608 Sum_probs=48.0
Q ss_pred CCCCccccccccccccCC----CceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcc
Q psy8622 35 TDDSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 92 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~----~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 92 (101)
..++...|+||++.+..+ ...+.++|||.||..|+.+|+..+..||+||..+...+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 345577899999998542 3447789999999999999999999999999999866544
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-17 Score=87.65 Aligned_cols=54 Identities=28% Similarity=0.723 Sum_probs=46.0
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 92 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 92 (101)
...+...|+||++.+.. +.++|+|.||..|+.+|+.....||+||..+...+..
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 44557789999999853 7789999999999999999999999999999765543
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.66 E-value=6.9e-17 Score=83.88 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=43.4
Q ss_pred CCccccccccccccCC-CceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLD-EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~-~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
.....|+||++.+... ..+..++|+|.||..|+.+|+.....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3467899999998543 35678899999999999999998899999999874
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.7e-17 Score=86.93 Aligned_cols=54 Identities=20% Similarity=0.658 Sum_probs=44.9
Q ss_pred CCCCccccccccccccCC----CceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~----~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
...+...|+||++.+..+ ..++.++|+|.||..||..|+..+..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 445677899999998643 234778999999999999999999999999998753
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=87.16 Aligned_cols=56 Identities=30% Similarity=0.509 Sum_probs=45.4
Q ss_pred cCCCCccccccccccccCCCceEEeC-CCCcccHhHHHHHHhcC--CcccccccccccCCcc
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLHSESAE 92 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~~~~~~~ 92 (101)
....+...|+||++.+..+ +.++ |+|.||..||..|+... ..||+||+.+...+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred ccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 3445678999999998644 7799 99999999999999765 6899999987655443
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=87.97 Aligned_cols=59 Identities=27% Similarity=0.570 Sum_probs=47.7
Q ss_pred ccCCCCccccccccccccCCCc-eEEeCCCCcccHhHHHHHHhcC---CcccccccccccCCc
Q psy8622 33 VRTDDSNLQCSVCWEQFTLDEA-VRKLPCDHFYHTPCIEPWLQLH---GTCPICRQTLHSESA 91 (101)
Q Consensus 33 ~~~~~~~~~C~IC~~~~~~~~~-~~~l~C~H~f~~~Ci~~w~~~~---~~CP~Cr~~~~~~~~ 91 (101)
.....+...|+||++.+...+. ++.++|||.||..|+..|+... ..||+||..+...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 3445567889999999875442 6788999999999999999875 789999998876543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.64 E-value=8e-17 Score=85.88 Aligned_cols=55 Identities=20% Similarity=0.631 Sum_probs=46.1
Q ss_pred CccccccccccccCC----CceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcc
Q psy8622 38 SNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 92 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~----~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 92 (101)
+...|+||++.+..+ ..+..++|||.||..|+.+|+..+..||+||..+...+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 356899999998542 3447789999999999999999999999999999876544
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.64 E-value=2.9e-16 Score=92.71 Aligned_cols=52 Identities=21% Similarity=0.554 Sum_probs=41.8
Q ss_pred CccccccccccccCCC---------------ceEEeCCCCcccHhHHHHHH-----hcCCcccccccccccC
Q psy8622 38 SNLQCSVCWEQFTLDE---------------AVRKLPCDHFYHTPCIEPWL-----QLHGTCPICRQTLHSE 89 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~---------------~~~~l~C~H~f~~~Ci~~w~-----~~~~~CP~Cr~~~~~~ 89 (101)
.+..|+||++.|..+. ....++|+|.||..||..|+ ....+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999985432 23468899999999999999 4467999999988654
No 17
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=88.48 Aligned_cols=52 Identities=25% Similarity=0.704 Sum_probs=41.1
Q ss_pred CccccccccccccC-----------CCceEEeC-CCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 38 SNLQCSVCWEQFTL-----------DEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 38 ~~~~C~IC~~~~~~-----------~~~~~~l~-C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
++..|+||++.+.. ++.++.++ |+|.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45568888887743 33345554 999999999999999999999999988654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.64 E-value=1.9e-16 Score=85.55 Aligned_cols=50 Identities=30% Similarity=0.777 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
+....|+||++.+. +....++|+|.||..|+.+|+..+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 34568999999985 335778999999999999999988999999998864
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=84.03 Aligned_cols=53 Identities=17% Similarity=0.540 Sum_probs=44.0
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHh-cCCcccccccccccCC
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSES 90 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~~~~ 90 (101)
...+...|+||++.+..+ +.++|||.||..|+.+|+. ....||+||..+..++
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 345578999999998644 5589999999999999994 5678999999987654
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=83.57 Aligned_cols=54 Identities=17% Similarity=0.512 Sum_probs=44.4
Q ss_pred cCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHh---cCCcccccccccccCC
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPICRQTLHSES 90 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~---~~~~CP~Cr~~~~~~~ 90 (101)
....+...|+||++.+.. ++.++|||.||..|+..|+. ....||+||..+..++
T Consensus 15 ~~~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345567899999999853 36789999999999999996 4568999999987654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.3e-16 Score=85.74 Aligned_cols=50 Identities=20% Similarity=0.553 Sum_probs=43.4
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
.......|+||++.+.. +++++|+|.||..|+..|+.....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34456789999999854 367999999999999999998999999999985
No 22
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.60 E-value=1.1e-15 Score=89.48 Aligned_cols=52 Identities=23% Similarity=0.487 Sum_probs=43.3
Q ss_pred CCccccccccccccCCC---------------ceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDE---------------AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~---------------~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
.++..|+||++.|...- .++.++|+|.||..||..|+..+.+||+||+.+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 35678999999986431 35668999999999999999999999999998643
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.59 E-value=5e-16 Score=94.67 Aligned_cols=49 Identities=37% Similarity=0.875 Sum_probs=42.7
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
++..|+||++.+.. ++.++|||.||..||..|+..+.+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35689999999854 37899999999999999999999999999998643
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.58 E-value=2e-15 Score=83.50 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=45.3
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc-CCcccccccccccCCcc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESAE 92 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~~~~~ 92 (101)
..+...|+||++.+..+ +.++|||.||..||.+|+.. ..+||+||..+...+..
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 34578999999998644 77899999999999999986 77999999998765443
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=3.9e-15 Score=83.25 Aligned_cols=56 Identities=21% Similarity=0.553 Sum_probs=46.2
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc------CCcccccccccccCCccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL------HGTCPICRQTLHSESAES 93 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~~~~~~~ 93 (101)
...+...|+||++.+..+ +.++|+|.||..|+..|+.. ...||+||..+...+...
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEE
T ss_pred hCccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCc
Confidence 345577999999998654 67899999999999999987 668999999997665443
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.57 E-value=9.9e-16 Score=88.73 Aligned_cols=55 Identities=25% Similarity=0.607 Sum_probs=45.5
Q ss_pred CCCCccccccccccccCCCceEE-eCCCCcccHhHHHHHHhcC-CcccccccccccCCcc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSESAE 92 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~~~~~~ 92 (101)
...+...|+||++.+.. ++. ++|||.||..||..|+... ..||+||..+...+..
T Consensus 18 ~l~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHHHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred cCCCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 34457899999999863 366 8999999999999999877 6999999999765543
No 27
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=82.84 Aligned_cols=54 Identities=24% Similarity=0.685 Sum_probs=43.9
Q ss_pred CCCccccccccccccCCCceEEeCCC-----CcccHhHHHHHHhcC--CcccccccccccCC
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLH--GTCPICRQTLHSES 90 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~f~~~Ci~~w~~~~--~~CP~Cr~~~~~~~ 90 (101)
..+...|.||++++..++.+ ++||. |.||..||.+|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34456899999998655554 68996 999999999999764 59999999997654
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.56 E-value=1e-15 Score=88.35 Aligned_cols=52 Identities=31% Similarity=0.759 Sum_probs=43.8
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcCCcccccccccccCC
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 90 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~ 90 (101)
..+...|+||++.+..+ +.+ +|||.||..|+..|+..+..||+||..+...+
T Consensus 19 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 34567999999998643 555 89999999999999998899999999987543
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.3e-15 Score=82.68 Aligned_cols=56 Identities=23% Similarity=0.631 Sum_probs=46.1
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc------CCcccccccccccCCccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL------HGTCPICRQTLHSESAES 93 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~~~~~~~ 93 (101)
...+...|+||++.+..+ +.++|+|.||..|+..|+.. ...||+||..+...+...
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCC
T ss_pred HccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCc
Confidence 345578999999998644 66899999999999999976 779999999998665443
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=9.1e-16 Score=84.98 Aligned_cols=56 Identities=23% Similarity=0.523 Sum_probs=45.6
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc-------CCcccccccccccCCccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-------HGTCPICRQTLHSESAES 93 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~-------~~~CP~Cr~~~~~~~~~~ 93 (101)
...+...|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+...+...
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred hcccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 345578999999998644 66899999999999999976 568999999997654443
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=7.4e-15 Score=83.58 Aligned_cols=50 Identities=30% Similarity=0.560 Sum_probs=42.1
Q ss_pred CCCCccccccccccccCCCceEEeC-CCCcccHhHHHHHHhcC--Ccccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLH 87 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 87 (101)
...+...|+||++.+..+ +.++ |||.||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 445678999999998654 7889 99999999999999643 58999999874
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=77.15 Aligned_cols=46 Identities=20% Similarity=0.546 Sum_probs=38.4
Q ss_pred cCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHh---cCCccccc
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPIC 82 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~---~~~~CP~C 82 (101)
....+...|+||++.+..+ +.++|||.||..||.+|+. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3455678999999998644 7789999999999999997 45689998
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.53 E-value=5.9e-15 Score=88.60 Aligned_cols=57 Identities=19% Similarity=0.626 Sum_probs=47.3
Q ss_pred CCccccccccccccCC----CceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCccc
Q psy8622 37 DSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES 93 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~----~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 93 (101)
.+...|+||++.+..+ ..++.++|||.||..||.+|+..+.+||+||+.+.......
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 3467899999998543 34478899999999999999999999999999997665543
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=1.3e-14 Score=77.76 Aligned_cols=54 Identities=19% Similarity=0.476 Sum_probs=42.7
Q ss_pred ccccccccc-cccCCCc-eEEeCCCCcccHhHHHHHHhc-CCcccccccccccCCcc
Q psy8622 39 NLQCSVCWE-QFTLDEA-VRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESAE 92 (101)
Q Consensus 39 ~~~C~IC~~-~~~~~~~-~~~l~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~~~~~ 92 (101)
+..|+||++ .+..+.. ...++|||.||..|+.+|+.. ...||+||..+...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 568999999 7755432 246799999999999999754 56899999999766543
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.51 E-value=1.3e-14 Score=84.93 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=44.7
Q ss_pred cCCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
....+...|+||++.+..+ +.+ +|||.||..||..|+.....||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred hccCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3445678999999998633 555 9999999999999999889999999998754
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=87.20 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=41.9
Q ss_pred CCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCC-ccccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 88 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~ 88 (101)
.+...|+||++.+..+ +.++|||.||..||..|+.... .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567899999998643 7789999999999999998544 99999999976
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=75.45 Aligned_cols=45 Identities=29% Similarity=0.727 Sum_probs=37.1
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHh---cCCccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPIC 82 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~---~~~~CP~C 82 (101)
...+...|+||++.+..+ +.++|+|.||..||.+|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345567899999998654 6689999999999999954 56689987
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.49 E-value=3.2e-15 Score=88.81 Aligned_cols=52 Identities=25% Similarity=0.529 Sum_probs=1.5
Q ss_pred CCccccccccccccCC-------------C--ceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLD-------------E--AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~-------------~--~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
..+..|+||++.|... + .+..++|+|.||..||.+|+..+.+||+||+++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3457899999998542 1 22335899999999999999999999999998643
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.47 E-value=2.1e-14 Score=85.28 Aligned_cols=54 Identities=22% Similarity=0.545 Sum_probs=45.0
Q ss_pred cCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCC-cccccccccccCC
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 90 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~~~ 90 (101)
....+...|+||++.+..+ +.++|||.||..||..|+.... .||+||..+....
T Consensus 13 ~~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 13 PPLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 3456678999999998644 7789999999999999998654 9999999987654
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=76.97 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcC--CcccccccccccC
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH--GTCPICRQTLHSE 89 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~~~~ 89 (101)
+....|+||.+.+..+. .-..|+|.||..||.+|++.+ .+||+||..+...
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34568999999997552 222699999999999999877 7999999988644
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.46 E-value=4.9e-14 Score=84.57 Aligned_cols=60 Identities=18% Similarity=0.597 Sum_probs=48.8
Q ss_pred ccCCCCccccccccccccCC----CceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcc
Q psy8622 33 VRTDDSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 92 (101)
Q Consensus 33 ~~~~~~~~~C~IC~~~~~~~----~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 92 (101)
....++...|+||++.+... ...+.++|||.||..|+.+|+....+||+||..+...+..
T Consensus 66 l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 66 IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence 34456678999999988532 2347789999999999999999999999999999766543
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=3.7e-14 Score=83.19 Aligned_cols=53 Identities=25% Similarity=0.649 Sum_probs=43.6
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCC---cccccccccccCCccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSESAES 93 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~---~CP~Cr~~~~~~~~~~ 93 (101)
....|+||++.+..+ +.++|||.||..|+..|+.... .||+||..+...+...
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 456899999998644 5689999999999999998654 8999999987655443
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.45 E-value=4.1e-14 Score=88.34 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=41.9
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhc-CCccccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL-HGTCPICRQTLHS 88 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~ 88 (101)
......|+||++.+.. . +.+ +|||.||..||..|+.. ...||+||..+..
T Consensus 51 ~~~~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKN--T-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSS--E-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhC--c-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456799999999864 3 555 99999999999999987 7789999999854
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.45 E-value=1.1e-14 Score=86.12 Aligned_cols=51 Identities=31% Similarity=0.713 Sum_probs=43.1
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc-CCccccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHS 88 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~ 88 (101)
...++..|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 344578999999998644 77899999999999999976 6689999999864
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.45 E-value=4.2e-14 Score=83.64 Aligned_cols=52 Identities=21% Similarity=0.538 Sum_probs=43.9
Q ss_pred CCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc-CCcccccccccccCCc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA 91 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~~~~ 91 (101)
.+...|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+...+.
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 3467899999998543 66899999999999999986 7799999999876544
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.45 E-value=9.3e-14 Score=78.25 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=45.8
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 91 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 91 (101)
..+.+.|+||++.+..+ +.++|||+|+..||..|+....+||+||..+...+.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 45578999999999654 889999999999999999988999999999876543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.44 E-value=6e-14 Score=86.64 Aligned_cols=49 Identities=22% Similarity=0.514 Sum_probs=42.2
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCC-cccccccccccC
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 89 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~~ 89 (101)
+...|+||++.+..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999998543 6799999999999999998654 899999999765
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.44 E-value=1.7e-13 Score=76.05 Aligned_cols=56 Identities=21% Similarity=0.553 Sum_probs=42.7
Q ss_pred CCCccccccccccccCCCceEEe--CCCCcccHhHHHHHHh-cCCcccccccccccCCcc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSESAE 92 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l--~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~~~~~~ 92 (101)
.+++..|+||++.+...+. ..+ +|||.||..|+..++. ....||.||+.+...+..
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 4557789999998853322 334 4999999999999874 356899999999766544
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.43 E-value=2.2e-13 Score=78.87 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 92 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 92 (101)
...+.+.||||++.+..+ +.++|||+|+..||..|+....+||+||.++...+..
T Consensus 25 ~~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred cCcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 345678999999999655 8899999999999999999888999999998765433
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.42 E-value=3.8e-13 Score=77.63 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=45.9
Q ss_pred CCCccccccccccccCCCceEEeCCC-CcccHhHHHHHHhcCCcccccccccccCCc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCD-HFYHTPCIEPWLQLHGTCPICRQTLHSESA 91 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~-H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 91 (101)
..+.+.|+||++.|..+ ++++|| |+|+..||..|+....+||+||.++...+.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 35578999999999654 789999 999999999999988899999999876544
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=83.76 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=43.2
Q ss_pred cCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCC-cccccccccc
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLH 87 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~ 87 (101)
...++...|+||++.+..+ +.++|||.||..||..|+.... .||+||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4556788999999998644 6789999999999999998654 8999999764
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=7.5e-14 Score=72.81 Aligned_cols=48 Identities=27% Similarity=0.568 Sum_probs=39.7
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
..+...|+||++.+..+ +.++|+|.||..|+.. ....||+||+.+...
T Consensus 3 e~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCCe---EEcCCCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 35577899999998654 7789999999999977 356899999988654
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.36 E-value=2.9e-13 Score=72.40 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCccccccccccccCCCceEEe--CCCCc-ccHhHHHHHHhcCCcccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL--PCDHF-YHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
.++..|+||++.... ...+ ||||. ||..|+..|...+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 346689999998642 2445 99999 899999999988889999999885
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.35 E-value=5.3e-13 Score=92.92 Aligned_cols=56 Identities=27% Similarity=0.676 Sum_probs=46.3
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHh-cCCcccccccccccCCcccCCC
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSESAESLGP 96 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~~~~~~~~~~ 96 (101)
....|+||++.+. .++.++|||.||..|+..|+. ....||+||..+.........+
T Consensus 331 ~~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~p 387 (389)
T 2y1n_A 331 TFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 387 (389)
T ss_dssp SSSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCCT
T ss_pred CCCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEecCC
Confidence 3468999999874 347899999999999999998 6889999999998765554443
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=1.5e-13 Score=81.43 Aligned_cols=51 Identities=22% Similarity=0.552 Sum_probs=42.2
Q ss_pred CCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcCCcccccccccccCC
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 90 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~ 90 (101)
...+...|+||++.+..+ +.+ +|||.||..||..|+. ..||+||..+...+
T Consensus 18 ~l~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHHHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hchhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 335578999999998644 666 8999999999999987 78999999985443
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.33 E-value=5.9e-13 Score=70.98 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=39.5
Q ss_pred CCccccccccccccCCCceEEe--CCCCc-ccHhHHHHHHhcCCcccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL--PCDHF-YHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
+....|+||++.... ...+ ||||. ||..|+..|...+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345689999997642 2445 99998 999999999988889999999885
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.31 E-value=9.3e-13 Score=82.49 Aligned_cols=54 Identities=20% Similarity=0.496 Sum_probs=44.9
Q ss_pred cCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcC-CcccccccccccCC
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSES 90 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~~~~ 90 (101)
...++.+.|+||++.+..+ +.++|||.||..||.+|+... ..||+||..+...+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 3556678999999998644 668999999999999999764 49999999987653
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.30 E-value=1.3e-13 Score=75.66 Aligned_cols=47 Identities=21% Similarity=0.605 Sum_probs=39.0
Q ss_pred CCCCccccccccccccCCCceEEeCCCCc-ccHhHHHHHHhcCCccccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
...+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 20 ~~~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 33456789999998743 477899999 999999988 789999998864
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=73.03 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=40.4
Q ss_pred CCccccccccccccCCCceEEeC-CCCcccHhHHHHHHhcC------Ccccc--cccc-cccC
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH------GTCPI--CRQT-LHSE 89 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~f~~~Ci~~w~~~~------~~CP~--Cr~~-~~~~ 89 (101)
...+.||||++.|..+ +.++ |||+|+..||..|+... .+||+ |+.. +...
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 4568899999999644 7786 99999999999999753 48999 9866 5443
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.24 E-value=4.5e-12 Score=84.19 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc-CCcccccccccccCCc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA 91 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~~~~ 91 (101)
......|+||++.+..+ ++++|||+||..||..|+.. ..+||+||.++...+.
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 34578999999999654 78999999999999999976 4459999999965443
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.7e-12 Score=70.53 Aligned_cols=46 Identities=22% Similarity=0.624 Sum_probs=37.5
Q ss_pred CCCccccccccccccCCCceEEeCCCCc-ccHhHHHHHHhcCCccccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
..+...|+||++.+.. ++.+||||. ||..|+.. ...||+||..+..
T Consensus 22 ~~~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3456789999998754 367899999 99999964 3789999998865
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.9e-11 Score=65.30 Aligned_cols=48 Identities=27% Similarity=0.680 Sum_probs=38.5
Q ss_pred CCCCccccccccccccCCCceEEeCCCCc-ccHhHHHHHHhcCCcccccccccccC
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
...+...|.||++... .++.+||+|. ||..|+.. ...||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3445678999999864 3488999999 99999984 47899999988653
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.15 E-value=2.6e-11 Score=76.70 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=44.3
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcC-CcccccccccccCCc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSESA 91 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~~~~~ 91 (101)
....+.||||++.+..+ ++++|||+|+..||..|+... .+||+|+.++...+.
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 45678999999999654 788999999999999999763 479999999876543
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=4.8e-11 Score=68.02 Aligned_cols=52 Identities=19% Similarity=0.662 Sum_probs=39.4
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhc--------CCcccc--cccc--cccC
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--------HGTCPI--CRQT--LHSE 89 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~--~~~~ 89 (101)
....|+||++.+..+......+|+|.||..|+..++.. ...||. |+.. +...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 46789999999865433333479999999999999853 237999 9988 6543
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.3e-10 Score=77.08 Aligned_cols=57 Identities=19% Similarity=0.479 Sum_probs=44.7
Q ss_pred ccCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcC--Ccccc--cccccccCCc
Q psy8622 33 VRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH--GTCPI--CRQTLHSESA 91 (101)
Q Consensus 33 ~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~--~~CP~--Cr~~~~~~~~ 91 (101)
+........||||++.|.. ++..+.|||+||..||..|+... ..||+ ||..+...+.
T Consensus 175 v~~~~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ecCCceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 3445667899999999963 34445899999999999999754 47999 9998865543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.05 E-value=2.9e-11 Score=67.09 Aligned_cols=46 Identities=26% Similarity=0.655 Sum_probs=37.6
Q ss_pred CCccccccccccccCCCceEEeCCCCc-ccHhHHHHHHhcCCcccccccccccC
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
.+...|+||++.+. .++.+||||. ||..|+..| ..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 34568999999874 3478999999 999999876 3899999988643
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.05 E-value=3.9e-11 Score=82.29 Aligned_cols=57 Identities=28% Similarity=0.702 Sum_probs=42.4
Q ss_pred CCCCccccccccccccCCCceE-----EeCCCCcccHhHHHHHHhcC-----------CcccccccccccCCc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVR-----KLPCDHFYHTPCIEPWLQLH-----------GTCPICRQTLHSESA 91 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~-----~l~C~H~f~~~Ci~~w~~~~-----------~~CP~Cr~~~~~~~~ 91 (101)
..+....|+||++.+..+..+- ...|+|.||..|+.+|++.. ..||+||+++..+-.
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 3456789999999886522111 23699999999999999742 469999999875543
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.04 E-value=1.6e-10 Score=60.92 Aligned_cols=49 Identities=27% Similarity=0.692 Sum_probs=38.1
Q ss_pred CCCccccccccccccCCCceEEeCCC--C---cccHhHHHHHHhc--CCcccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCD--H---FYHTPCIEPWLQL--HGTCPICRQTLH 87 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~--H---~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 87 (101)
+++...|.||++... +. .++||. + .||..||.+|+.. +.+||+|+..+.
T Consensus 3 ~~~~~~CrIC~~~~~--~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECS--CC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCC--Cc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456678999999743 33 468854 4 8999999999964 678999999875
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.98 E-value=3.2e-10 Score=59.93 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=45.5
Q ss_pred ccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcCCcccccccccccCCcccCC
Q psy8622 39 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLG 95 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~ 95 (101)
.+.|+|+++.+.++ +.+ ++||+|...||.+|+..+.+||+.+.++...+...+.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 46799999998644 667 8999999999999998888899999999877766544
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.91 E-value=2.1e-10 Score=79.09 Aligned_cols=46 Identities=28% Similarity=0.690 Sum_probs=38.6
Q ss_pred CCCccccccccccccCCCceEEeCCCCc-ccHhHHHHHHhcCCccccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
..+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 292 l~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3456799999998853 477899999 999999987 689999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.75 E-value=8.9e-09 Score=58.84 Aligned_cols=46 Identities=22% Similarity=0.483 Sum_probs=37.8
Q ss_pred ccccccccccCCCceEEeCCCCcccHhHHHHHHh-cCCccccccccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHS 88 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~~ 88 (101)
.|++|--.+. ...+.+||.|+||.+|+..|.+ ..+.||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4778876654 4568899999999999999974 57899999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.42 E-value=4.1e-07 Score=59.79 Aligned_cols=49 Identities=22% Similarity=0.606 Sum_probs=40.2
Q ss_pred CccccccccccccCCCceEEeC-CCCcccHhHHHHHHhcCC--cccccccccccC
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQTLHSE 89 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~-C~H~f~~~Ci~~w~~~~~--~CP~Cr~~~~~~ 89 (101)
....|.||.+.+..+ ...+ |+|.||..|+..|++... .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999988755 4444 999999999999997644 899999987655
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.32 E-value=0.0013 Score=37.02 Aligned_cols=62 Identities=23% Similarity=0.456 Sum_probs=44.6
Q ss_pred ccccCCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcccCCC
Q psy8622 31 VQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGP 96 (101)
Q Consensus 31 ~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~~ 96 (101)
......-+...|-.|+-... ..+.-..|.+|..|+...+.....||+|..++.-.-..+..|
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~P 81 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENK----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAP 81 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCS----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSC
T ss_pred cCCccccCcccChhhccccC----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCC
Confidence 33445556788999997642 132334799999999999999999999999987554444333
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.91 E-value=0.00077 Score=38.15 Aligned_cols=35 Identities=17% Similarity=0.447 Sum_probs=25.3
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHH
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPW 72 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w 72 (101)
++..|+||.+.+..+....-+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35789999986432222233889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.06 E-value=0.0067 Score=31.98 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=31.1
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcCC----cccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQT 85 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~~----~CP~Cr~~ 85 (101)
......|.||.+. ..++.- .|...||..|+...+.... .||.|...
T Consensus 9 ~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3345679999763 222322 3899999999987665432 69999654
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.82 E-value=0.032 Score=30.78 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=23.4
Q ss_pred CCCccccccccccccCCCceEEeC---CCCcccHhHHHHH
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPW 72 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~---C~H~f~~~Ci~~w 72 (101)
...+..|.||-.. ... ..+| |+.+||..|+.+.
T Consensus 12 ~~~D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-ccc---ceeccccccccccHhhcccc
Confidence 3456789999643 222 3344 8999999999996
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.39 E-value=0.019 Score=30.74 Aligned_cols=53 Identities=21% Similarity=0.474 Sum_probs=33.7
Q ss_pred cCCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhc----CCcccccccccc
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL----HGTCPICRQTLH 87 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 87 (101)
....+...|.||..... ++.++.- .|...||..|+..-... .-.||.|+..+.
T Consensus 13 ~~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred ccCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 33445667999987642 2223322 38899999999653322 236999987654
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.86 E-value=0.048 Score=28.06 Aligned_cols=46 Identities=26% Similarity=0.660 Sum_probs=30.1
Q ss_pred CCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhc----CCccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL----HGTCPICRQ 84 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~----~~~CP~Cr~ 84 (101)
....+..|.+|... ..++.- .|...||..|+..-+.. .=.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34556789999873 222222 38889999999864332 226999965
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.75 E-value=0.074 Score=41.18 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCCCccccccccccccCCCceEEeCCC-CcccHhHHHHHHhcCCcccccccccccCCcc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCD-HFYHTPCIEPWLQLHGTCPICRQTLHSESAE 92 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 92 (101)
...+...|||-++.+.++ +++|-| ++|=+..|.+|+....+||.=|.++......
T Consensus 887 ~iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVT 942 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred CCcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccc
Confidence 345578899999998655 889987 5899999999999899999999998765443
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.80 E-value=0.072 Score=27.48 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=32.8
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHh-----cCCcccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ-----LHGTCPICRQT 85 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~ 85 (101)
.++...|+||...+......+.- .|...||..|+.--.. ..-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45667899999876433333333 4889999999853221 23369999763
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.03 E-value=0.14 Score=28.46 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=32.6
Q ss_pred ccCCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcCC----ccccccccc
Q psy8622 33 VRTDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQTL 86 (101)
Q Consensus 33 ~~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~~----~CP~Cr~~~ 86 (101)
......+..|.+|... ++ +..- .|...||..|+..-+.... .||.|+..-
T Consensus 19 ~~~d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CSSSSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred cccCCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 3445567789999874 22 2222 3888999999966443322 699997643
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.52 E-value=0.2 Score=26.06 Aligned_cols=35 Identities=20% Similarity=0.582 Sum_probs=23.7
Q ss_pred CCCccccccccccccCCCceEEe--CCCCcccHhHHH
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIE 70 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l--~C~H~f~~~Ci~ 70 (101)
.+....|++|...+......+.- .|...||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 44566899999987655444444 488999999983
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.39 E-value=1.1 Score=24.92 Aligned_cols=50 Identities=22% Similarity=0.441 Sum_probs=35.4
Q ss_pred CccccccccccccCCC--ceEEe--CCCCcccHhHHHHHH-hcCCcccccccccc
Q psy8622 38 SNLQCSVCWEQFTLDE--AVRKL--PCDHFYHTPCIEPWL-QLHGTCPICRQTLH 87 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~--~~~~l--~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 87 (101)
....|.||-+.+.... .+++. -|+-..|..|+.--. ..++.||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4568999999864332 22222 377788999996433 45789999999886
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.12 E-value=0.093 Score=25.77 Aligned_cols=43 Identities=26% Similarity=0.629 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEe-CCCCcccHhHHHHHHhc----CCccccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL----HGTCPICRQ 84 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~----~~~CP~Cr~ 84 (101)
.|.||...-.. ..++.- .|...||..|+..=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888765322 222222 38899999999643322 125888854
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.70 E-value=0.03 Score=28.86 Aligned_cols=48 Identities=29% Similarity=0.543 Sum_probs=29.8
Q ss_pred CCCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhc----CCcccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL----HGTCPICRQT 85 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 85 (101)
.+..+..|.+|... ++-+.--.|...||..|+..-+.. .=.||.|+..
T Consensus 5 ~d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 34556789999863 221111138889999999753332 1259999654
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.40 E-value=0.048 Score=34.72 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=31.3
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcC----Ccccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH----GTCPICRQTLH 87 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~~ 87 (101)
+..+..|.+|... + .+... .|...||..|+..-+... =.||.|+..-.
T Consensus 4 d~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 4456779999853 2 22222 388999999997644332 26999987543
No 87
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=90.27 E-value=0.23 Score=27.39 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCCCccccccccccccCCC-ceEEe-CCCCcccHhHHHHHHhc--CCccccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDE-AVRKL-PCDHFYHTPCIEPWLQL--HGTCPICRQTLHS 88 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~-~~~~l-~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~~ 88 (101)
..+.+..|.||...-.... .++.- .|.-.||..|+..-... .=.||.|......
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3455678999987531111 22222 38889999999742211 2269999765433
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.05 E-value=0.28 Score=26.38 Aligned_cols=50 Identities=16% Similarity=0.494 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHh-----cCCccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ-----LHGTCPICRQTL 86 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~ 86 (101)
+.....| ||..........+.- .|...||..|+.--.. ..-.||.|+...
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4445567 898876423333333 3889999999942111 234799998754
No 89
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.97 E-value=0.46 Score=25.80 Aligned_cols=42 Identities=14% Similarity=0.360 Sum_probs=28.9
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
......|+.|-+.+. ++ .+..-+..||..|+ .|-.|+..|..
T Consensus 22 ~~~~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIR-GP--FLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCC-SC--EEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCCccCCCEec-ce--EEEECCccccccCC--------ccCCCCCCCCC
Confidence 344668999998874 22 33345788888876 48888877764
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.40 E-value=0.085 Score=32.89 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=30.5
Q ss_pred CccccccccccccCCCceEEe-CCCCcccHhHHHHHHhc----CCcccccccccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL----HGTCPICRQTLH 87 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 87 (101)
.+..|.+|... ++ +..- .|...||..|+..-+.. .=.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999854 22 2222 38899999998664433 226999987553
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=89.27 E-value=0.69 Score=25.11 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=33.4
Q ss_pred CCCCccccccccccccCCCceEE-eCCCCcccHhHHHHHH--------hcCCccccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWL--------QLHGTCPICRQTLHS 88 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~w~--------~~~~~CP~Cr~~~~~ 88 (101)
.+.+...|.+|...|..-..--. ..||.+||..|..... ...+.|-.|-..+..
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 34456689999999854322122 2499999999976532 112357777655543
No 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.21 E-value=0.84 Score=24.90 Aligned_cols=39 Identities=21% Similarity=0.500 Sum_probs=28.8
Q ss_pred CCCccccccccccccCCCceEEeC--CCCcccHhHHHHHHhc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLP--CDHFYHTPCIEPWLQL 75 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~--C~H~f~~~Ci~~w~~~ 75 (101)
......|.+|.+.++... .+..| =.|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 355788999999986443 33344 3799999999988764
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.09 E-value=0.05 Score=27.83 Aligned_cols=46 Identities=28% Similarity=0.675 Sum_probs=29.6
Q ss_pred CCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhc----CCccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL----HGTCPICRQTL 86 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 86 (101)
..+..|.+|... ++ ++.- .|...||..|+..-+.. .=.||.|....
T Consensus 3 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 346689999874 22 2222 48899999999753332 22599997654
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=88.07 E-value=0.1 Score=27.21 Aligned_cols=46 Identities=26% Similarity=0.601 Sum_probs=29.7
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhc----CCcccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL----HGTCPICRQT 85 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 85 (101)
...+..|.||... ++ ++.- .|...||..|+..-+.. .=.||.|...
T Consensus 5 ~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3456789999864 22 2222 38889999999753322 2269999653
No 95
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.68 E-value=0.06 Score=27.12 Aligned_cols=45 Identities=29% Similarity=0.695 Sum_probs=28.0
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcC----Cccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH----GTCPICRQ 84 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 84 (101)
...+..|.+|... ++ ++.- .|...||..|+..-+... =.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456689999874 22 2222 488899999997533221 15887753
No 96
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=87.26 E-value=0.085 Score=30.98 Aligned_cols=50 Identities=16% Similarity=0.375 Sum_probs=29.7
Q ss_pred CCCccccccccccccCCCceEE-eCCCCcccHhHHHHHHhcCCcccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGTCPICRQT 85 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 85 (101)
+.....|..|...|..-..--. ..||.+||..|........+.|-.|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3344689999998853321122 3499999999987655556678888543
No 97
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=87.23 E-value=0.57 Score=23.02 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=25.9
Q ss_pred ccccccccccCCCceEEe--CCCCcccHhHHHHH----HhcCCcccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPW----LQLHGTCPICR 83 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l--~C~H~f~~~Ci~~w----~~~~~~CP~Cr 83 (101)
.|.+|...+..+...+.- .|...||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467888776433333333 37889999998421 12345788774
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.73 E-value=0.19 Score=28.23 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=28.0
Q ss_pred CCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhc---CCccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL---HGTCPICRQ 84 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~---~~~CP~Cr~ 84 (101)
++...| ||......+ .++.- .|...||..|+..-... .-.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 344667 887764333 22222 38899999998642221 237999974
No 99
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=86.70 E-value=0.49 Score=25.61 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=31.6
Q ss_pred CCCccccccccccccCCCceEE-eCCCCcccHhHHHHHHh------cCCcccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQ------LHGTCPICRQTLH 87 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~~~ 87 (101)
+.+...|.+|...|.....--. ..||.+||..|....+. ....|-.|-..+.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 3445689999998853321112 24999999999764321 1235666655443
No 100
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.48 E-value=0.77 Score=31.95 Aligned_cols=50 Identities=18% Similarity=0.510 Sum_probs=31.8
Q ss_pred ccccccccccccCCCceEEeCCCCc--ccHhHHHHHHhc--CCcccccccccccCC
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHF--YHTPCIEPWLQL--HGTCPICRQTLHSES 90 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~--f~~~Ci~~w~~~--~~~CP~Cr~~~~~~~ 90 (101)
.+.|||=...+. .+++...|.|. |-..-+..+... .-.||+|.+.+...+
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 468998877765 45566779998 433333333222 337999998875443
No 101
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=86.26 E-value=0.45 Score=27.92 Aligned_cols=34 Identities=15% Similarity=0.456 Sum_probs=23.3
Q ss_pred CccccccccccccCCCceEE-eCCCCcccHhHHHH
Q psy8622 38 SNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEP 71 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~ 71 (101)
....|.+|...|.....--. -.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34579999998853321122 24999999999754
No 102
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.23 E-value=0.56 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=24.1
Q ss_pred CCCccccccccccccCCCceEE-eCCCCcccHhHHHH
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEP 71 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~ 71 (101)
+.+...|.+|...|..-..--. ..||.+||..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4445689999998853321111 24999999999754
No 103
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.12 E-value=0.82 Score=31.68 Aligned_cols=50 Identities=22% Similarity=0.456 Sum_probs=32.2
Q ss_pred ccccccccccccCCCceEEeCCCCc--ccHhHHHHHHhc--CCcccccccccccCC
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHF--YHTPCIEPWLQL--HGTCPICRQTLHSES 90 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~--f~~~Ci~~w~~~--~~~CP~Cr~~~~~~~ 90 (101)
.+.|||=...+. .+.+...|.|. |-..-+..+... .-.||+|.+.+..++
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 467998877765 44566779998 444333333332 337999999886543
No 104
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=86.01 E-value=0.57 Score=24.50 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=25.6
Q ss_pred CCCCccccccccccccCCCceEEeCC-CCcccHhHHHHH
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLPC-DHFYHTPCIEPW 72 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~C-~H~f~~~Ci~~w 72 (101)
..++..-|.||.++ ..++-+.| +-.||..|+...
T Consensus 4 ~~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 34556679999987 34566678 779999998775
No 105
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=85.90 E-value=0.83 Score=25.17 Aligned_cols=51 Identities=18% Similarity=0.454 Sum_probs=32.1
Q ss_pred CCccccccccccccCCCceEE-eCCCCcccHhHHHHHHh------cCCcccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQ------LHGTCPICRQTLH 87 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~~~ 87 (101)
.+...|.+|...|..-..--. ..||.+||..|...... ..+.|-.|-..+.
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 345679999998853322122 24999999999865431 2335777765553
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=85.90 E-value=0.46 Score=24.43 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=30.9
Q ss_pred CCccccccccccccCCCceEEe--CCCCcccHhHHHHHHh-------cCCccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQ-------LHGTCPICRQTL 86 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~f~~~Ci~~w~~-------~~~~CP~Cr~~~ 86 (101)
..+..|.||...........++ .|...||..|+..-+. ..=.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4567899999764322222222 3889999999875221 223688886543
No 107
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=85.76 E-value=0.28 Score=25.13 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=27.9
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPIC 82 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~C 82 (101)
..|..|+..+.......-..|++.||.+|=.-.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999988432112222499999999965433444578887
No 108
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.44 E-value=0.14 Score=28.34 Aligned_cols=56 Identities=21% Similarity=0.492 Sum_probs=35.2
Q ss_pred CccccccccccccCCCceEEe--CCCCcccHhHHHHHHh--------cCCcccccccccccCCccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQ--------LHGTCPICRQTLHSESAES 93 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l--~C~H~f~~~Ci~~w~~--------~~~~CP~Cr~~~~~~~~~~ 93 (101)
....|.+|...-.......++ .|...||..|+..-+. ..=.|+.|+..........
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~ 80 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKN 80 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcccc
Confidence 466899999763221122333 3899999999975432 1227999987765544433
No 109
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.22 E-value=0.21 Score=28.53 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccHhHHHHHH
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 73 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~ 73 (101)
...+..|.||.+.-...+-+.--.|...||..|+...+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 34567899998753211112223489999999997654
No 110
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.15 E-value=1.5 Score=23.15 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=29.4
Q ss_pred CccccccccccccCCCceEEe-CCCCcccHhHHHHH---------HhcCCccccccccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPW---------LQLHGTCPICRQTL 86 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w---------~~~~~~CP~Cr~~~ 86 (101)
....| ||...... ..++.- .|...||..|+.-- ....-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 35667 89887542 222322 48999999998421 12355899997643
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.98 E-value=0.19 Score=27.97 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHhcC----Ccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH----GTCPICRQT 85 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~ 85 (101)
...+...|.||...-.. ..++.- .|...||..|+..-+... =.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 33445679999876321 222322 388999999997433221 259999764
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=84.92 E-value=0.53 Score=26.78 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=32.6
Q ss_pred ccccccccccccCCCceEEe--CCCCcccHhHHHHH------Hh----cCCcccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPW------LQ----LHGTCPICRQTLH 87 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l--~C~H~f~~~Ci~~w------~~----~~~~CP~Cr~~~~ 87 (101)
...|+||...+......+.- .|...||..|+.-- +. ..-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 35799999987554444444 48889999998421 10 2337999987654
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.88 E-value=1.8 Score=25.98 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=30.9
Q ss_pred CCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHh-----------cCCccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ-----------LHGTCPICRQ 84 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~-----------~~~~CP~Cr~ 84 (101)
.+..+..|.+|.+. ++ +..- .|...||..||.+-+. ..=.||.|+.
T Consensus 59 ~Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 35557789999874 22 2222 4889999999986542 1226999964
No 114
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=84.79 E-value=0.83 Score=24.08 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=21.9
Q ss_pred cccccccccccCCCceEE-eCCCCcccHhHHHH
Q psy8622 40 LQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEP 71 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~ 71 (101)
..|.+|...|..-..--. ..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999998853321111 24999999999753
No 115
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.16 E-value=0.22 Score=28.61 Aligned_cols=44 Identities=32% Similarity=0.618 Sum_probs=25.5
Q ss_pred ccccccccccCCCceEEe-CCCCcccHhHHHHHHhcC----Cccccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH----GTCPICRQ 84 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 84 (101)
.|.||...-...+.+..- .|...||..|+..-+... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 566776532122222222 388999999986543321 26888864
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=82.99 E-value=0.94 Score=24.88 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=33.0
Q ss_pred CCccccccccccccCCCceEE-eCCCCcccHhHHHHHH-------hcCCccccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWL-------QLHGTCPICRQTLHS 88 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~w~-------~~~~~CP~Cr~~~~~ 88 (101)
.+...|.+|...|..-..--. ..||.+||..|....+ .....|-.|-..+..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 345589999998853321111 2499999999976432 123468888766543
No 117
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=82.64 E-value=1.3 Score=25.40 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=28.1
Q ss_pred CCCCccccccccccccCCCceEEeC---CCCcccHhHHHHHHhcCC----ccccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPWLQLHG----TCPICRQTL 86 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l~---C~H~f~~~Ci~~w~~~~~----~CP~Cr~~~ 86 (101)
....+..|.+|.+. ..++.-. |...||..|+. +.... .||.|.-.+
T Consensus 11 ~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 11 KQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred cCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34556789999842 2333333 77899999996 33221 477665443
No 118
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.88 E-value=1 Score=28.21 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=32.4
Q ss_pred ccccccccccccCCCc---eEEe-CCCCcccHhHHHH------HHh-----cCCccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEA---VRKL-PCDHFYHTPCIEP------WLQ-----LHGTCPICRQTL 86 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~---~~~l-~C~H~f~~~Ci~~------w~~-----~~~~CP~Cr~~~ 86 (101)
+..|+||...+..++. .+.- .|...||..|+.- -+. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3469999998876542 3333 3899999999832 111 145899998754
No 119
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.79 E-value=1.7 Score=27.90 Aligned_cols=48 Identities=19% Similarity=0.455 Sum_probs=29.9
Q ss_pred ccccccccccccCCCceEE-eCCCCcccHhHHHHHHh--------cCCccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQ--------LHGTCPICRQTL 86 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~-l~C~H~f~~~Ci~~w~~--------~~~~CP~Cr~~~ 86 (101)
...|.+|...|..-..--. ..||.+||..|...... ..+.|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 4589999998853322122 24999999999764321 123566665544
No 120
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.78 E-value=2.5 Score=22.20 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=29.6
Q ss_pred CCCcccccccccccc-CCCceEEe-CCCCcccHhHHHHHHhc--CCccccccc
Q psy8622 36 DDSNLQCSVCWEQFT-LDEAVRKL-PCDHFYHTPCIEPWLQL--HGTCPICRQ 84 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~-~~~~~~~l-~C~H~f~~~Ci~~w~~~--~~~CP~Cr~ 84 (101)
......|.||...-. ..+.++.- .|.-.||..|+..-... .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 445678999987531 12222222 38899999999642211 226888865
No 121
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=80.64 E-value=0.093 Score=26.92 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=28.7
Q ss_pred CCCcccccccccc-ccCCCceEEeCCCCcccHhHHHHHHhc-CC---ccccccc
Q psy8622 36 DDSNLQCSVCWEQ-FTLDEAVRKLPCDHFYHTPCIEPWLQL-HG---TCPICRQ 84 (101)
Q Consensus 36 ~~~~~~C~IC~~~-~~~~~~~~~l~C~H~f~~~Ci~~w~~~-~~---~CP~Cr~ 84 (101)
..+...|.||+.. |.++..-.-.-|.-.||..|-..|-.. ++ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3456789999974 433322222347777888877665422 22 4777764
No 122
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.25 E-value=1 Score=23.71 Aligned_cols=46 Identities=22% Similarity=0.564 Sum_probs=27.4
Q ss_pred CCCccccccccccccCCCceEEe-C--CC-CcccHhHHHHHHhc----CCccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQL----HGTCPICRQTL 86 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~--C~-H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 86 (101)
..+...| ||..... + .++.- . |. ..||..|+. +.. .-.||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3456678 8987532 2 22221 2 55 589999997 322 22699997643
No 123
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=80.14 E-value=1.9 Score=27.46 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=23.4
Q ss_pred CccccccccccccCCCceEEe-CCCCcccHhHHHH
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEP 71 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~ 71 (101)
++..|.+|...|..-..--.. .||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 346899999988533221222 4999999999754
No 124
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=80.07 E-value=0.62 Score=24.35 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=21.9
Q ss_pred ccccccccccccCCCceEEeCCCCcccH-hHHHHHHhcCCcccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHT-PCIEPWLQLHGTCPICR 83 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~-~Ci~~w~~~~~~CP~Cr 83 (101)
-..|..|...+.... ....=+..||. .|..+. ....|-.|.
T Consensus 27 CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcC
Confidence 356777776664332 22234556676 466542 344566664
No 125
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=79.99 E-value=0.45 Score=21.59 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=10.6
Q ss_pred CccccccccccccCC
Q psy8622 38 SNLQCSVCWEQFTLD 52 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~ 52 (101)
+...||||+..+...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 357889998877543
No 126
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.77 E-value=1.6 Score=23.25 Aligned_cols=42 Identities=29% Similarity=0.659 Sum_probs=27.9
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
....|+.|.+.+...+.+. .=+..||..|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 4567999998875444332 34678888885 477777766543
No 127
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.09 E-value=1.6 Score=22.93 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=26.7
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
....|+.|.+.+... .+..-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 356899999887642 33445778888886 4777777664
No 128
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=78.81 E-value=4.1 Score=24.06 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=29.3
Q ss_pred CCCCccccccccccccCCCceEEe-CCCCcccHhHHHHHH------h-----cCCccccccc
Q psy8622 35 TDDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL------Q-----LHGTCPICRQ 84 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~------~-----~~~~CP~Cr~ 84 (101)
.+..+..|.+|.+. ..+..- .|-..||..||.+-+ . ..=.|+.|+.
T Consensus 53 ~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34456679999874 222211 388999999998742 1 1126999954
No 129
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.22 E-value=1.6 Score=22.79 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=30.7
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHH----hcCCccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL----QLHGTCPICRQTL 86 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~----~~~~~CP~Cr~~~ 86 (101)
......| ||......+...+.- .|...||..|+.--. ...-.||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4456678 798765333333333 388899999985321 1233699997643
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=77.58 E-value=0.3 Score=25.76 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=24.2
Q ss_pred ccccccccccCCCceEEe-CCCCcccHhHHHHHHhc-----CCccccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL-----HGTCPICRQ 84 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~ 84 (101)
.|.||...-.. ..++.- .|...||..|+..=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677653211 222222 38899999999743322 226888864
No 131
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.43 E-value=1.2 Score=23.21 Aligned_cols=40 Identities=25% Similarity=0.559 Sum_probs=25.9
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
...|+.|.+.+...+.+. .-+..||..|+ .|..|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 357888888776444332 34667887775 47777777654
No 132
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.42 E-value=3.6 Score=22.75 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=26.8
Q ss_pred CCccccccccccccCCCceEEe-C--CC-CcccHhHHHHHHhc----CCccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQL----HGTCPICRQTL 86 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l-~--C~-H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 86 (101)
.+...| ||..... + .++.- . |. ..||..|+. +.. .-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 445667 9988642 2 12211 2 54 589999996 222 22699997643
No 133
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=76.92 E-value=1.1 Score=25.41 Aligned_cols=12 Identities=17% Similarity=0.744 Sum_probs=10.7
Q ss_pred cccHhHHHHHHh
Q psy8622 63 FYHTPCIEPWLQ 74 (101)
Q Consensus 63 ~f~~~Ci~~w~~ 74 (101)
.||..||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 134
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=76.87 E-value=1.1 Score=25.36 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=10.7
Q ss_pred cccHhHHHHHHh
Q psy8622 63 FYHTPCIEPWLQ 74 (101)
Q Consensus 63 ~f~~~Ci~~w~~ 74 (101)
.||..||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 135
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=76.14 E-value=2.4 Score=24.29 Aligned_cols=54 Identities=11% Similarity=-0.024 Sum_probs=35.4
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccCCcc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 92 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 92 (101)
-+.|..|...+..........=+..||..|..+.+.....|-.|...|......
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 357888877774211112234567889999888665555899999988754443
No 136
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.07 E-value=0.37 Score=30.24 Aligned_cols=45 Identities=27% Similarity=0.545 Sum_probs=28.3
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhc----CCccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL----HGTCPICRQTL 86 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 86 (101)
+..|.+|... ++-+.--.|...||..|+..-+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3579999864 221121238889999999653322 22699998654
No 137
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.58 E-value=0.38 Score=25.86 Aligned_cols=43 Identities=28% Similarity=0.593 Sum_probs=25.5
Q ss_pred ccccccccccCCCceEEe-CCCCcccHhHHHHHHhc-----CCccccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL-----HGTCPICRQ 84 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~ 84 (101)
.|.||...-.. ..++.- .|...||..|+..-+.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888864222 222222 48899999999743321 125887753
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.63 E-value=5.4 Score=21.12 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=29.9
Q ss_pred CCCccccccccccccCCCceEEe---CCCCcccHhHHHHHHh---------cCCccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL---PCDHFYHTPCIEPWLQ---------LHGTCPICRQTL 86 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l---~C~H~f~~~Ci~~w~~---------~~~~CP~Cr~~~ 86 (101)
.+....| ||......+ .++.- .|...||..|+.---. ..-.||.|+..-
T Consensus 13 ~~~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 13 PEIKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3456678 798863222 22332 4888999999953111 133799997644
No 139
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.50 E-value=2.6 Score=22.28 Aligned_cols=40 Identities=23% Similarity=0.587 Sum_probs=27.3
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
....|+-|-+.+..++.+.. =+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 35679999988765544333 4677888775 4778877765
No 140
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=74.25 E-value=1.4 Score=26.18 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=30.2
Q ss_pred CCccccccccccccC--CCceEEeCCCCcccHhHHHHHHhcC----Ccccccccc
Q psy8622 37 DSNLQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEPWLQLH----GTCPICRQT 85 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~--~~~~~~l~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~ 85 (101)
.....|.+|...|.. +....-..|.|.+|..|-....... =.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 456789999998842 2222334599999998865321111 147777653
No 141
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=73.49 E-value=0.33 Score=26.13 Aligned_cols=26 Identities=38% Similarity=0.884 Sum_probs=17.4
Q ss_pred CCCCcccHhHHHHHHhc----C-Cccccccc
Q psy8622 59 PCDHFYHTPCIEPWLQL----H-GTCPICRQ 84 (101)
Q Consensus 59 ~C~H~f~~~Ci~~w~~~----~-~~CP~Cr~ 84 (101)
.|...||..|+..-+.. . =.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 38889999999754332 1 25888864
No 142
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.53 E-value=2.7 Score=25.58 Aligned_cols=50 Identities=24% Similarity=0.509 Sum_probs=30.4
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHH-----hcCCccccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL-----QLHGTCPICRQTL 86 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~-----~~~~~CP~Cr~~~ 86 (101)
.++...| +|..........+.- .|...||..|+.--. ...-.||.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3456788 998865323323332 388999999994211 1234799998643
No 143
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=72.41 E-value=7.3 Score=20.75 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=28.2
Q ss_pred CCccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
.....|..|.+.+.. . .+..-+..||..|+ .|-.|+..|..
T Consensus 23 ~~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-A--VVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-C--CEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-c--EEEECCceECccCC--------EecCCCCCCCC
Confidence 345689999998764 2 23346778888885 47788777754
No 144
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.27 E-value=0.27 Score=28.36 Aligned_cols=46 Identities=26% Similarity=0.532 Sum_probs=27.1
Q ss_pred ccccccccccCCCceEEe-CCCCcccHhHHHHHHhcC----Ccccccccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH----GTCPICRQTLH 87 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~~ 87 (101)
.|.||...-..+ .++.- .|...||..|+..=+... =.||.|+..+.
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 466776643222 22222 488999999997533221 15888876554
No 145
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=71.85 E-value=4.7 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=24.3
Q ss_pred CCCccccccccccccCCCceEEe---CCCCcccHhHHHHHHh
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL---PCDHFYHTPCIEPWLQ 74 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l---~C~H~f~~~Ci~~w~~ 74 (101)
+..+..|.||-+. ..++.- .|...||..||..++.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3346678888764 233333 3888999999998864
No 146
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.66 E-value=3.8 Score=20.69 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=18.7
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|..|.+.+... .+..-+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG---GVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS---EEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeeccc---eEEECccccCCCCC--------ccCCCCCcCC
Confidence 3566666655422 22234556666554 3555655553
No 147
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=71.07 E-value=0.84 Score=31.69 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCccccccccccccCCCc-eEEeCCCCcccHhHHHHHHh-------cCCccccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEA-VRKLPCDHFYHTPCIEPWLQ-------LHGTCPICRQTL 86 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~-~~~l~C~H~f~~~Ci~~w~~-------~~~~CP~Cr~~~ 86 (101)
.....|.+|...|..... ..-..||++||..|....+. ..+.|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 445689999998753211 11124999999999876531 134677775544
No 148
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=70.98 E-value=5.1 Score=22.93 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=26.3
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
-+.|..|...+..........=+..||..|..+-+.....|..|...|..
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 35666666665321111222345567777766644333367777766643
No 149
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=69.65 E-value=2.5 Score=21.16 Aligned_cols=38 Identities=13% Similarity=0.379 Sum_probs=23.6
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
..|+.|.+.+. ++ .+..=+..||..|+ .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 46777877765 22 23334667777775 47777776653
No 150
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.89 E-value=7.3 Score=20.84 Aligned_cols=40 Identities=23% Similarity=0.528 Sum_probs=21.9
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
...|.-|.+.+...+. +..-+..||..|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCC
Confidence 4467777776654332 2334566666664 35555555543
No 151
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.88 E-value=3.2 Score=21.81 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=22.9
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
...|+-|.+.+. +.. +..-+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC--------EeCCCCCccCC
Confidence 456888877765 222 2234566776664 46667666653
No 152
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=67.25 E-value=2.5 Score=23.84 Aligned_cols=42 Identities=29% Similarity=0.627 Sum_probs=25.1
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
.+..||+|..++.... ++.+|..|-.. +.....||-|..++.
T Consensus 31 M~~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 4478999998774321 12224444332 244557999988774
No 153
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=67.12 E-value=2.9 Score=25.42 Aligned_cols=46 Identities=20% Similarity=0.502 Sum_probs=28.8
Q ss_pred CccccccccccccC--CCceEEeCCCCcccHhHHHHHHhcCC--ccccccc
Q psy8622 38 SNLQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQ 84 (101)
Q Consensus 38 ~~~~C~IC~~~~~~--~~~~~~l~C~H~f~~~Ci~~w~~~~~--~CP~Cr~ 84 (101)
....|.+|...|.. +....-..|.|.+|..|-. |..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 57799999998632 2233334599999999972 222211 4666654
No 154
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=66.53 E-value=1.5 Score=19.08 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=17.1
Q ss_pred cccccccccccCCCceEEeCCCCcccHhH
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPC 68 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~C 68 (101)
..|+.|...+...+.+. .=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 46888887765444322 3467788777
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.05 E-value=4.1 Score=21.28 Aligned_cols=40 Identities=20% Similarity=0.556 Sum_probs=23.3
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
..|+.|.+.+...+.. +..=+..||..|+ .|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCC
Confidence 4677777776543322 2234667777665 36666666643
No 156
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.28 E-value=3.3 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=12.1
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHH
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCI 69 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci 69 (101)
..|..|.+.+.. .. +..-+..||..|+
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF 32 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RV--IKAMNNSWHPECF 32 (70)
T ss_dssp SBCSSSCCBCCS-CC--EEETTEEECTTTS
T ss_pred CcCccCCCEecc-eE--EEECcccccccCC
Confidence 346666555532 11 1223445555553
No 157
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.11 E-value=0.37 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.511 Sum_probs=21.2
Q ss_pred cccccccccccCCCc---eEEeC--CCCcccHhHHHHHHh
Q psy8622 40 LQCSVCWEQFTLDEA---VRKLP--CDHFYHTPCIEPWLQ 74 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~---~~~l~--C~H~f~~~Ci~~w~~ 74 (101)
..||-|...++-.+. +.-.. |++.||..|+..|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 468888776643331 11112 778888888877754
No 158
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.13 E-value=3.6 Score=20.74 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy8622 41 QCSVCWEQFT 50 (101)
Q Consensus 41 ~C~IC~~~~~ 50 (101)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 4555555543
No 159
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.59 E-value=4.6 Score=20.46 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=19.2
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|..|.+.+...+. .+..-+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCC
Confidence 356666666543211 22234556666554 3555555553
No 160
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=63.48 E-value=1.3 Score=28.66 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=23.4
Q ss_pred ccccccccccCCCceEEe-CCCCcccHhHHHHHHhc-----CCccccccc
Q psy8622 41 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL-----HGTCPICRQ 84 (101)
Q Consensus 41 ~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~ 84 (101)
.|.+|...-.. ..+..- .|...||..|+..=+.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888764211 222222 38899999999853322 125999964
No 161
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.07 E-value=5.9 Score=20.31 Aligned_cols=41 Identities=24% Similarity=0.578 Sum_probs=24.5
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
...|+.|.+.+...+.++ ..-+..||..|+ .|-.|+..+..
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCC
Confidence 457888888775433322 224667777765 36677666654
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.83 E-value=4.1 Score=21.04 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=23.5
Q ss_pred cccccccccccC--CCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~--~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|+.|.+.+.. ... .+..-+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 468888887753 112 22334667887775 3666666654
No 163
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=62.77 E-value=12 Score=21.21 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=30.4
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
-..|..|...+... .....=+..||..|..+ .....|..|...|..
T Consensus 30 CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE--IYVMVNDKPVCKPCYVK--NHAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS--EEEEETTEEEEHHHHHH--HSCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC--EEEeECCEEechHHhCc--CcCccCcccCCcCCc
Confidence 46777787776432 23334567788888765 345678888888864
No 164
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.09 E-value=5.8 Score=20.04 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=19.4
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|+.|.+.+...+.. +..=+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccC
Confidence 3566666665433221 1223555666554 3555555553
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.60 E-value=6.2 Score=20.02 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=22.2
Q ss_pred cccccccccccC--CCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~--~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|+-|.+.+.. .+. .+..-+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCC
Confidence 467777777653 112 22234666777665 4666666664
No 166
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=60.03 E-value=5.5 Score=21.71 Aligned_cols=36 Identities=17% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCCccccccccccccCCCceEE--eCCCCcccHhHHHHH
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRK--LPCDHFYHTPCIEPW 72 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~--l~C~H~f~~~Ci~~w 72 (101)
....+.|.||...- .+..+.- -.|.-.||..|..+-
T Consensus 14 ~R~~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 14 ARWKLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred HHhcCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 34467899997531 1211111 138889999999764
No 167
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.80 E-value=1.7 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=17.6
Q ss_pred CcccHhHHHHHHh--cCCccccccccccc
Q psy8622 62 HFYHTPCIEPWLQ--LHGTCPICRQTLHS 88 (101)
Q Consensus 62 H~f~~~Ci~~w~~--~~~~CP~Cr~~~~~ 88 (101)
..||..|+.--.. ..-.||.|+.....
T Consensus 30 ~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 30 EWFHYGCVGLTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CCEEHHHHTCSSCCSSCCCCHHHHHHHHH
T ss_pred cCCcccccccCcCCCCCEECCCCCccccc
Confidence 6899999962111 12269999876643
No 168
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.85 E-value=4.9 Score=20.84 Aligned_cols=37 Identities=24% Similarity=0.560 Sum_probs=18.8
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|+.|.+.+... .+..=+..||..|+ .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCC
Confidence 3566666655432 22234556666554 3555655553
No 169
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=58.22 E-value=2.6 Score=18.15 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=7.4
Q ss_pred ccccccccccc
Q psy8622 78 TCPICRQTLHS 88 (101)
Q Consensus 78 ~CP~Cr~~~~~ 88 (101)
.||+|+..+++
T Consensus 5 ~CpvCk~q~Pd 15 (28)
T 2jvx_A 5 CCPKCQYQAPD 15 (28)
T ss_dssp ECTTSSCEESS
T ss_pred cCccccccCcC
Confidence 58888776543
No 170
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=57.91 E-value=3.2 Score=22.41 Aligned_cols=43 Identities=19% Similarity=0.546 Sum_probs=24.2
Q ss_pred cccccccccC--CCceEEeC-CCCcccHhHHHHHHhc--CCccccccc
Q psy8622 42 CSVCWEQFTL--DEAVRKLP-CDHFYHTPCIEPWLQL--HGTCPICRQ 84 (101)
Q Consensus 42 C~IC~~~~~~--~~~~~~l~-C~H~f~~~Ci~~w~~~--~~~CP~Cr~ 84 (101)
||-|-..+.. +...+.-+ |++.||..|-..|-.. ..+|..-+.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 6655543321 12234455 9999999998887222 235655433
No 171
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.79 E-value=3.7 Score=21.48 Aligned_cols=37 Identities=24% Similarity=0.610 Sum_probs=22.0
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|+.|.+.+. +.. +..-+..||..|+ .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~-~~~--v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEV--VSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCC--EEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cce--EEECCceeCccCC--------ccccCCCCCC
Confidence 36888888775 222 2234667777775 3555555553
No 172
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=57.71 E-value=4.8 Score=20.83 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=28.3
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHh---cCCccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ---LHGTCPICRQ 84 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~---~~~~CP~Cr~ 84 (101)
..+...| ||..... +...+.- .|...||..|+.--.. ..-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3445678 8987653 2223332 3889999999853211 1236888864
No 173
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=57.55 E-value=2.9 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=13.5
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHH
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCI 69 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci 69 (101)
..|..|.+.+...+.+ ..-+..||..|+
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~CF 35 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCCF 35 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSSE
T ss_pred CcCcCcCccccCceeE--EeCCcccccccC
Confidence 3566666655433322 223455555553
No 174
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.19 E-value=4.6 Score=20.79 Aligned_cols=9 Identities=22% Similarity=0.656 Sum_probs=4.1
Q ss_pred ccccccccc
Q psy8622 41 QCSVCWEQF 49 (101)
Q Consensus 41 ~C~IC~~~~ 49 (101)
.|+-|...+
T Consensus 7 ~C~~C~~~I 15 (73)
T 1wig_A 7 GCDSCEKYI 15 (73)
T ss_dssp SCSSSCCCC
T ss_pred CcccCCCEe
Confidence 344444444
No 175
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=57.02 E-value=20 Score=19.00 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=18.7
Q ss_pred CccccccccccccCCCceEEeCCCCcccH
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHT 66 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~ 66 (101)
....|..|...+.. ....-.|+..||.
T Consensus 24 ~~nRC~~CrKkvgL--~gf~CrCg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGL--TGFDCRCGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGG--GCEECTTSCEECS
T ss_pred cCCcChhhCCcccc--cCeecCCCCEech
Confidence 45689999886532 2355669999975
No 176
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=56.61 E-value=0.56 Score=25.27 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=12.2
Q ss_pred CCCCcccHhHHHHH
Q psy8622 59 PCDHFYHTPCIEPW 72 (101)
Q Consensus 59 ~C~H~f~~~Ci~~w 72 (101)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999998876
No 177
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.27 E-value=6 Score=21.46 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=5.5
Q ss_pred cccccccccc
Q psy8622 40 LQCSVCWEQF 49 (101)
Q Consensus 40 ~~C~IC~~~~ 49 (101)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 3566666554
No 178
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=55.81 E-value=2.1 Score=24.40 Aligned_cols=26 Identities=19% Similarity=0.645 Sum_probs=16.7
Q ss_pred CCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 59 PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 59 ~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
.||+.|. .-+.....||.|+..-...
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 4899881 1123456899998866544
No 179
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=54.93 E-value=20 Score=20.17 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=17.7
Q ss_pred CCCcccHhHHH------HHHhc-----CCccccccccc
Q psy8622 60 CDHFYHTPCIE------PWLQL-----HGTCPICRQTL 86 (101)
Q Consensus 60 C~H~f~~~Ci~------~w~~~-----~~~CP~Cr~~~ 86 (101)
|+..||..|+. +.+.. ...||.|....
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 88899999962 22222 35799996544
No 180
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.68 E-value=4.5 Score=21.12 Aligned_cols=38 Identities=24% Similarity=0.546 Sum_probs=21.1
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
...|+.|...+.. . .+..-+..||..|+ .|..|+..+.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-R--ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-C--CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-e--eEEECCccccHHhc--------CcccCCCccC
Confidence 3467777766642 2 22224556666664 3666766664
No 181
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.42 E-value=4.7 Score=20.92 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=20.6
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
..|+.|...+.. +. +..-+..||..|+ .|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NY--LSAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SC--EEETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-ee--EEECCCeEecCcC--------ChhhCCCCCCC
Confidence 357777666643 22 2223556666664 36666666643
No 182
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=52.91 E-value=27 Score=21.12 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=17.1
Q ss_pred CCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 61 DHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 61 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
+..||..|..+ .....|..|...|...
T Consensus 106 g~~yC~~~y~~--~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 106 ESVYCKDDFFK--RFGTKCAACQLGIPPT 132 (182)
T ss_dssp TEEECHHHHHH--TTSCCCTTTCCCCCSS
T ss_pred CEeeecCcccc--ccccccccCCCccCCC
Confidence 44566666654 3456788888877653
No 183
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=52.47 E-value=6.8 Score=19.61 Aligned_cols=42 Identities=24% Similarity=0.558 Sum_probs=27.3
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
...|..|...+...+.++ ..=+..||..|+ .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE-EETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEE-EeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 457888988876544332 234667888776 477787777543
No 184
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.58 E-value=2.2 Score=21.52 Aligned_cols=43 Identities=23% Similarity=0.629 Sum_probs=25.0
Q ss_pred CCccccccccccccCCCceEEe-C--CC-CcccHhHHHHHHhc----CCccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQL----HGTCPICRQ 84 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l-~--C~-H~f~~~Ci~~w~~~----~~~CP~Cr~ 84 (101)
.+...| ||..... + .++.- . |. ..||..|+. +.. .-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345567 8987532 2 22222 2 55 589999997 222 226888864
No 185
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=50.43 E-value=24 Score=20.10 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=28.4
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
...|+-|-..+.... ++..-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc--------CcCcCCCccc
Confidence 468999999876432 22335778998885 5889988885
No 186
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.25 E-value=16 Score=25.62 Aligned_cols=34 Identities=24% Similarity=0.586 Sum_probs=23.2
Q ss_pred CCCccccccccccccCCCceEEe---CCCCcccHhHHHHHH
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL---PCDHFYHTPCIEPWL 73 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l---~C~H~f~~~Ci~~w~ 73 (101)
+-.+..|.+|-+. ..++.- .|...||..||..++
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhc
Confidence 3345678888764 222222 488999999999987
No 187
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.10 E-value=2.2 Score=21.58 Aligned_cols=43 Identities=23% Similarity=0.625 Sum_probs=24.5
Q ss_pred CCccccccccccccCCCceEEe-C--CC-CcccHhHHHHHHhc----CCccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQL----HGTCPICRQ 84 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l-~--C~-H~f~~~Ci~~w~~~----~~~CP~Cr~ 84 (101)
++...| ||..... + .++.- . |. ..||..|+. +.. .-.||.|+.
T Consensus 8 ~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345567 8987532 2 22221 2 44 689999997 332 226888854
No 188
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=49.74 E-value=2.1 Score=20.84 Aligned_cols=40 Identities=20% Similarity=0.502 Sum_probs=22.2
Q ss_pred cccccccCCCceEEe-CCCCcccHhHHHHHHh---cCCccccccc
Q psy8622 44 VCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ---LHGTCPICRQ 84 (101)
Q Consensus 44 IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~---~~~~CP~Cr~ 84 (101)
||..... +...+.- .|...||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5665432 2222222 3888999999853211 2236888864
No 189
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=49.49 E-value=7.5 Score=19.94 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=26.8
Q ss_pred cccccccccccC---CCceEEeCCCCcccHhHHHHHHhcCCcccccccccccC
Q psy8622 40 LQCSVCWEQFTL---DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 89 (101)
Q Consensus 40 ~~C~IC~~~~~~---~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 89 (101)
..|+-|...+.. ... .+..=+..||..|+ .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCCC
Confidence 578888888763 112 22334678888875 488888877543
No 190
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=48.47 E-value=10 Score=23.29 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=25.7
Q ss_pred ccccccccccccC-CCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTL-DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~-~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
-+.|..|...|.. +.. ....=+..||..|..+-+.....|..|...|..
T Consensus 32 CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GCBCTTTCCBHHHHCSE-EEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CcccCCCCcccccCCce-EEEeCCccccccccccccccCCccccCCCcccc
Confidence 3556666665542 111 222245667777766544332357777766653
No 191
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=47.67 E-value=17 Score=19.63 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=26.5
Q ss_pred ccccccccccccCCC---ceEEeCCCCcccHhHHHHHHhcCCcccc
Q psy8622 39 NLQCSVCWEQFTLDE---AVRKLPCDHFYHTPCIEPWLQLHGTCPI 81 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~---~~~~l~C~H~f~~~Ci~~w~~~~~~CP~ 81 (101)
...|.+|.+...... ..+-+-|+-.+|..|+... ...|++
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC---CSCBCC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc---cCcCCC
Confidence 468999988754322 2233349999999998874 444553
No 192
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.39 E-value=2.6 Score=21.47 Aligned_cols=45 Identities=20% Similarity=0.519 Sum_probs=25.1
Q ss_pred CCccccccccccccCCCceEEe-C--CC-CcccHhHHHHHHh--cCCccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQ--LHGTCPICRQ 84 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l-~--C~-H~f~~~Ci~~w~~--~~~~CP~Cr~ 84 (101)
++...| ||.... .+ .++.- . |. ..||..|+.--.. ..-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 345567 898753 22 22222 2 44 7999999962111 1226998865
No 193
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.31 E-value=6.1 Score=22.55 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=26.8
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccc
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 85 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 85 (101)
.-+.|..|...|..+.. ....=+..||..|..+.+. ..|..+...
T Consensus 35 ~CF~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~~~--~~~~~~~~~ 79 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDR-YLLINSDIVCEQDIYEWTK--INGGSGGSG 79 (123)
T ss_dssp TTCBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHHHH--HHTCCCCCC
T ss_pred ccCccccCCCCCCCCCc-EEeeCCEEEcHHHhHHHhc--cccCCCCCC
Confidence 34678888877743332 3333577888888877653 234455443
No 194
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=45.17 E-value=18 Score=25.99 Aligned_cols=49 Identities=18% Similarity=0.509 Sum_probs=30.0
Q ss_pred CCCccccccccccccCCCceEEe-CCCCcccHhHHHHHHh-----cCCcccccccc
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ-----LHGTCPICRQT 85 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~ 85 (101)
..+...| ||......+..++.. .|...||..|+.---. ..-.||.|+..
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 4445556 898765333333333 3899999999953211 12369999754
No 195
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=44.80 E-value=15 Score=19.76 Aligned_cols=46 Identities=11% Similarity=0.317 Sum_probs=29.8
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCccccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
-..|..|...+... . ....=+..||..|..+ .....|..|...|..
T Consensus 33 CF~C~~C~~~L~~~-~-~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANE-T-FVAKDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSS-C-CEEETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcC-e-eECcCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 46777887777422 1 2233466788888644 345689999888864
No 196
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=43.20 E-value=29 Score=17.94 Aligned_cols=46 Identities=22% Similarity=0.572 Sum_probs=27.6
Q ss_pred cccccccccccCCCceEEe-CCCCcccHhHHHHHHh-----cCCccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ-----LHGTCPICRQTL 86 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l-~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~ 86 (101)
..| ||...+..+..++.- .|.-.||..|+.--.. ..-.||.|+...
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 344 787765333333333 3889999999953211 234699997653
No 197
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.66 E-value=11 Score=19.52 Aligned_cols=39 Identities=23% Similarity=0.558 Sum_probs=22.3
Q ss_pred cccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
..|..|...+...+. ++..=+..||..|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR-ELFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCC-BCCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcE-EEEeCCccccccCC--------eecCCCCccC
Confidence 468888777653221 11123567777765 3667766664
No 198
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=41.44 E-value=9.3 Score=21.02 Aligned_cols=48 Identities=13% Similarity=0.353 Sum_probs=25.6
Q ss_pred cCCCCccccccccccccCCCceEEe-CCC---CcccHhHHHHHH--hcCCcccc-ccc
Q psy8622 34 RTDDSNLQCSVCWEQFTLDEAVRKL-PCD---HFYHTPCIEPWL--QLHGTCPI-CRQ 84 (101)
Q Consensus 34 ~~~~~~~~C~IC~~~~~~~~~~~~l-~C~---H~f~~~Ci~~w~--~~~~~CP~-Cr~ 84 (101)
...++...| ||..... + .++.- .|. ..||..|+.--. ...-.||. |+.
T Consensus 21 ~~~~~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp ---CCSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCCCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344556678 8987532 2 22222 244 689999995210 11236999 874
No 199
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.53 E-value=38 Score=17.38 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=18.4
Q ss_pred CccccccccccccCCCceEEeCCCCcccH
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHT 66 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~ 66 (101)
....|..|...+... ...-.|+..||.
T Consensus 14 ~~~rC~~C~kkvgl~--~f~CrCg~~FC~ 40 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM--GFKCKCGSTFCG 40 (64)
T ss_dssp CSCSCTTTCCCCTTS--CEECTTSCEECS
T ss_pred cCCcChhhCCccccc--CeEeecCCEecc
Confidence 356899998875421 244579999975
No 200
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=39.67 E-value=15 Score=18.20 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=9.4
Q ss_pred Ccccccccccccc
Q psy8622 38 SNLQCSVCWEQFT 50 (101)
Q Consensus 38 ~~~~C~IC~~~~~ 50 (101)
+-..||+|...+.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 3467999988764
No 201
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.40 E-value=37 Score=20.23 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=22.5
Q ss_pred ccccccccccccCCCceEEeCCCCcccHhHHHHHHhcCCcccccccccc
Q psy8622 39 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 87 (101)
Q Consensus 39 ~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 87 (101)
-+.|..|...|.... . ..=+..||..|..+- ....|..|...|.
T Consensus 33 CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~--f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC--F-SRGESVYCKDDFFKR--FGTKCAACQLGIP 76 (169)
T ss_dssp TSBCTTTCCBCCSCC--E-ESSSCEECHHHHHHH--HSCBCTTTCCBCC
T ss_pred cCccCCCCCcCCCCC--c-ccCCeeeeccccccc--ccccccccccccC
Confidence 355666666654321 2 223556666666543 2345666655554
No 202
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.49 E-value=13 Score=18.38 Aligned_cols=40 Identities=23% Similarity=0.535 Sum_probs=24.2
Q ss_pred cccccccccccCCCceEEeCCCCccc--HhHHHHHHhcCCccccccccccc
Q psy8622 40 LQCSVCWEQFTLDEAVRKLPCDHFYH--TPCIEPWLQLHGTCPICRQTLHS 88 (101)
Q Consensus 40 ~~C~IC~~~~~~~~~~~~l~C~H~f~--~~Ci~~w~~~~~~CP~Cr~~~~~ 88 (101)
..|+-|.+.+..++. .+..-+..|| ..|+ .|-.|+..+..
T Consensus 3 ~~C~~C~~~I~~~~~-~v~a~~~~wH~~~~CF--------~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQ-RVTYNNFSWHASTECF--------LCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSC-EEEETTEEEETTTTTS--------BCTTTCCBCTT
T ss_pred CCCcCCCCeeccCce-EEEECCCccCCCCCCE--------ECCCCCCcCCC
Confidence 357778777754222 2223467788 7775 47777777643
No 203
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=35.91 E-value=12 Score=19.13 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=26.7
Q ss_pred CCccccccccccccCCCceEEeC---CCCcccHhHHHHHH---h-----cCCccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPWL---Q-----LHGTCPICRQ 84 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~---C~H~f~~~Ci~~w~---~-----~~~~CP~Cr~ 84 (101)
++...| ||......+ .++.-. |...||..|+.--- . ..-.||.||.
T Consensus 8 e~~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344567 786654332 334443 88899999983210 0 1236999974
No 204
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.56 E-value=22 Score=19.79 Aligned_cols=36 Identities=8% Similarity=-0.062 Sum_probs=20.9
Q ss_pred ccccccccccccC-CCceEEeCCCCcccHhHHHHHHhc
Q psy8622 39 NLQCSVCWEQFTL-DEAVRKLPCDHFYHTPCIEPWLQL 75 (101)
Q Consensus 39 ~~~C~IC~~~~~~-~~~~~~l~C~H~f~~~Ci~~w~~~ 75 (101)
-+.|..|...+.. +.. ....=+..||..|..+-+..
T Consensus 30 CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TCCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHTS
T ss_pred cCcccccCCchhcCCCe-eEEECCeeechHHHHHHhCc
Confidence 4677778777642 111 22234667888887765543
No 205
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.99 E-value=53 Score=17.43 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=21.4
Q ss_pred CCCccccccccccccCC--CceEEeCCCCcccHhHH
Q psy8622 36 DDSNLQCSVCWEQFTLD--EAVRKLPCDHFYHTPCI 69 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~--~~~~~l~C~H~f~~~Ci 69 (101)
.+....|+.|.+.|..- ....--.|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 45677899999987411 12222348888777664
No 206
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.20 E-value=9.8 Score=21.27 Aligned_cols=13 Identities=38% Similarity=1.168 Sum_probs=9.7
Q ss_pred CCccccccccccc
Q psy8622 76 HGTCPICRQTLHS 88 (101)
Q Consensus 76 ~~~CP~Cr~~~~~ 88 (101)
...||+|.+++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4479999887754
No 207
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.35 E-value=55 Score=16.78 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=18.7
Q ss_pred CccccccccccccCCCceEEeCCCCcccH
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHT 66 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~ 66 (101)
....|..|...+... ...-.|+..||.
T Consensus 14 ~~~rC~~C~kkvgl~--~f~CrCg~~FC~ 40 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMCRCGTTFCG 40 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEECSSSCEECT
T ss_pred cCCcChhhCCccCcc--CEEeecCCEecc
Confidence 456899998875422 245579999975
No 208
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.77 E-value=4 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=29.6
Q ss_pred CCccccccccccccCCCceEEe---CCC--CcccHhHHHHHHhcCCcccccccc
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKL---PCD--HFYHTPCIEPWLQLHGTCPICRQT 85 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l---~C~--H~f~~~Ci~~w~~~~~~CP~Cr~~ 85 (101)
.....||+|-..-... ++.. .=| +.+|.-|-..|-.....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5577999998753211 1110 112 355667777887777889999764
No 209
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=30.59 E-value=21 Score=18.58 Aligned_cols=9 Identities=44% Similarity=1.305 Sum_probs=4.4
Q ss_pred ccccccccc
Q psy8622 78 TCPICRQTL 86 (101)
Q Consensus 78 ~CP~Cr~~~ 86 (101)
.||+|.+++
T Consensus 11 ~CP~Cgkp~ 19 (68)
T 1lv3_A 11 NCPTCGKTV 19 (68)
T ss_dssp ECTTTCCEE
T ss_pred cCCCCCCcc
Confidence 355555544
No 210
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=28.59 E-value=48 Score=25.14 Aligned_cols=37 Identities=16% Similarity=0.539 Sum_probs=26.0
Q ss_pred ccccccccccccC-------CCceEEeCCCCcccHhHHHHHHhc
Q psy8622 39 NLQCSVCWEQFTL-------DEAVRKLPCDHFYHTPCIEPWLQL 75 (101)
Q Consensus 39 ~~~C~IC~~~~~~-------~~~~~~l~C~H~f~~~Ci~~w~~~ 75 (101)
...||+|...... ......+.|+-.||..|+...++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 3467888766521 124677889999999999876554
No 211
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=28.05 E-value=46 Score=16.79 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=13.3
Q ss_pred CCcccccccccccCCcccCCC
Q psy8622 76 HGTCPICRQTLHSESAESLGP 96 (101)
Q Consensus 76 ~~~CP~Cr~~~~~~~~~~~~~ 96 (101)
+..||.|............+|
T Consensus 18 k~~CP~CG~~T~~~hParfSp 38 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKFSL 38 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCCCT
T ss_pred cccCcCCCCcCCCCCCCCCCC
Confidence 456888887776555544444
No 212
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=26.24 E-value=2.9 Score=17.06 Aligned_cols=11 Identities=45% Similarity=1.437 Sum_probs=6.7
Q ss_pred cccHhHHHHHH
Q psy8622 63 FYHTPCIEPWL 73 (101)
Q Consensus 63 ~f~~~Ci~~w~ 73 (101)
.||..|-..|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 36666666664
No 213
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=25.89 E-value=17 Score=15.14 Aligned_cols=10 Identities=40% Similarity=1.298 Sum_probs=6.0
Q ss_pred cccccccccc
Q psy8622 78 TCPICRQTLH 87 (101)
Q Consensus 78 ~CP~Cr~~~~ 87 (101)
.||+|.+.++
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4777765544
No 214
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.55 E-value=14 Score=19.26 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=7.1
Q ss_pred CCcccccccccc
Q psy8622 76 HGTCPICRQTLH 87 (101)
Q Consensus 76 ~~~CP~Cr~~~~ 87 (101)
--.||.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (69)
T 2pk7_A 8 ILACPICKGPLK 19 (69)
T ss_dssp TCCCTTTCCCCE
T ss_pred heeCCCCCCcCe
Confidence 335677766654
No 215
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.26 E-value=74 Score=15.63 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=6.2
Q ss_pred CCcccHhHHHHHH
Q psy8622 61 DHFYHTPCIEPWL 73 (101)
Q Consensus 61 ~H~f~~~Ci~~w~ 73 (101)
+..||..|..+.+
T Consensus 53 ~~~yC~~cy~~~~ 65 (72)
T 1x61_A 53 RRAYCEGCYVATL 65 (72)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CeEECHHHHHHHH
Confidence 4445555554433
No 216
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.73 E-value=23 Score=18.29 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=9.4
Q ss_pred CcccccccccccC
Q psy8622 77 GTCPICRQTLHSE 89 (101)
Q Consensus 77 ~~CP~Cr~~~~~~ 89 (101)
-.||.|+.++...
T Consensus 9 L~CP~ck~~L~~~ 21 (68)
T 2hf1_A 9 LVCPLCKGPLVFD 21 (68)
T ss_dssp CBCTTTCCBCEEE
T ss_pred eECCCCCCcCeEe
Confidence 3699998877543
No 217
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.63 E-value=24 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.9
Q ss_pred CCcccccccccccC
Q psy8622 76 HGTCPICRQTLHSE 89 (101)
Q Consensus 76 ~~~CP~Cr~~~~~~ 89 (101)
--.||.|+.++...
T Consensus 8 iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 8 ILVCPVTKGRLEYH 21 (68)
T ss_dssp CCBCSSSCCBCEEE
T ss_pred heECCCCCCcCeEe
Confidence 34699998877543
No 218
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.54 E-value=16 Score=21.86 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=13.8
Q ss_pred CCCCcccHhHHHHHHhcCCccccccccc
Q psy8622 59 PCDHFYHTPCIEPWLQLHGTCPICRQTL 86 (101)
Q Consensus 59 ~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 86 (101)
.|+|.|-.. .....||.|..++
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCcccCC------CCCCcCCCCCCcc
Confidence 478777321 2234799998775
No 219
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.68 E-value=64 Score=21.98 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCCCccccccccccccC--CCceEEeCCCCcccHhHHHH
Q psy8622 35 TDDSNLQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEP 71 (101)
Q Consensus 35 ~~~~~~~C~IC~~~~~~--~~~~~~l~C~H~f~~~Ci~~ 71 (101)
.......|..|...+.. .....-..|+..+|..|...
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 45567899999987731 22233335999999999764
No 220
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.47 E-value=1e+02 Score=16.67 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=19.8
Q ss_pred CCccccccccccccCCCceEEeCCCCcccH
Q psy8622 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHT 66 (101)
Q Consensus 37 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~ 66 (101)
.....|..|-..+... ....-.|+..||.
T Consensus 23 ~~~~rC~~C~kkvgl~-~~f~CrCg~~FC~ 51 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA-TSFECRCGNNFCA 51 (85)
T ss_dssp CCCCBCSSSCCBCSSS-SCEECTTCCEECT
T ss_pred ccCccchhhCCeeccc-CCeEcCCCCEecc
Confidence 3456899999876431 1255679999986
No 221
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=31 Score=16.53 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=10.1
Q ss_pred CccccccccccccCC
Q psy8622 38 SNLQCSVCWEQFTLD 52 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~ 52 (101)
....|.+|-..|...
T Consensus 17 ~~~~C~~C~k~f~~~ 31 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRR 31 (73)
T ss_dssp SEEECSSSCCEEECC
T ss_pred CCeeCCcccchhCCH
Confidence 356788887777543
No 222
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.17 E-value=13 Score=19.25 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=6.1
Q ss_pred Ccccccccccc
Q psy8622 77 GTCPICRQTLH 87 (101)
Q Consensus 77 ~~CP~Cr~~~~ 87 (101)
-.||+|+.++.
T Consensus 11 L~CP~ck~~L~ 21 (67)
T 2jny_A 11 LACPKDKGPLR 21 (67)
T ss_dssp CBCTTTCCBCE
T ss_pred hCCCCCCCcCe
Confidence 35666665554
No 223
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=21.69 E-value=61 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=12.2
Q ss_pred cCCcccccccccccCCc
Q psy8622 75 LHGTCPICRQTLHSESA 91 (101)
Q Consensus 75 ~~~~CP~Cr~~~~~~~~ 91 (101)
....|+.||+.+.+.+.
T Consensus 17 ~~~~c~~c~q~ld~p~l 33 (268)
T 3epz_A 17 QGPKCIQCGQYLDDPDL 33 (268)
T ss_dssp -CCBCTTTCCBTTCTTC
T ss_pred CCchhHHHHhhccCccc
Confidence 35579999998876553
No 224
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.68 E-value=25 Score=18.28 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=9.8
Q ss_pred CCcccccccccccC
Q psy8622 76 HGTCPICRQTLHSE 89 (101)
Q Consensus 76 ~~~CP~Cr~~~~~~ 89 (101)
--.||.|+.++...
T Consensus 8 iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 8 ILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCBCTTTCCBEEEE
T ss_pred heECCCCCCcCEEe
Confidence 34699998877543
No 225
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.57 E-value=1.3e+02 Score=18.19 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=22.8
Q ss_pred CccccccccccccCCCceEEeCCCCcccHhHHHHHHh
Q psy8622 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ 74 (101)
Q Consensus 38 ~~~~C~IC~~~~~~~~~~~~l~C~H~f~~~Ci~~w~~ 74 (101)
.-+.|..|...+.... ....=+..||..|..+.+.
T Consensus 33 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTT--VAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSS--EEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCe--eEecCCEeeChhhhHhhcC
Confidence 3567888888775432 2233467788888887654
No 226
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.29 E-value=1e+02 Score=16.22 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=19.7
Q ss_pred CCCccccccccccccCCCceEEeCCCCcccH
Q psy8622 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHT 66 (101)
Q Consensus 36 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f~~ 66 (101)
......|..|...+... ...-.|+..||.
T Consensus 22 k~~~~RC~~C~kkvgL~--~f~CrCg~~FCs 50 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT--GFKCRCGSTFCG 50 (74)
T ss_dssp TCCCCBCSSSCCBCTTT--CEECTTSCEECT
T ss_pred cccCccchhhcCccccc--ceEeccCCEecc
Confidence 34456899998775422 355579999975
No 227
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.19 E-value=99 Score=15.58 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=5.3
Q ss_pred cccccccccc
Q psy8622 41 QCSVCWEQFT 50 (101)
Q Consensus 41 ~C~IC~~~~~ 50 (101)
.|+.|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1x6a_A 17 FCHGCSLLMT 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCCcC
Confidence 4555555544
Done!