RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8622
(101 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 61.8 bits (150), Expect = 4e-15
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 37 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 86
D ++C+VC + E R LP C H +H C++ WL H TCP+CR T+
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 55.7 bits (134), Expect = 1e-12
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 41 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 88
+C +C E + LPC H + CI W++ + TCP+C+ + S
Sbjct: 7 RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 50.1 bits (119), Expect = 3e-10
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 8 FLVHHFSYSSLGSVHNTTRNPALVQVRTDDSNLQCSVCWEQF-TLDEAVRKLPCDHFYHT 66
F V ++ +L + N A+ + D ++C + + V C+H +H
Sbjct: 4 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 63
Query: 67 PCIEPWLQLHGTCPICRQ 84
CI WL+ CP+ +
Sbjct: 64 HCISRWLKTRQVCPLDNR 81
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 49.2 bits (117), Expect = 6e-10
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 31 VQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 88
+ + C +C E + V+ PC H T C+ W + G CP CR +
Sbjct: 15 LYCEMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 45.4 bits (107), Expect = 3e-08
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES 90
L+C +C E CDH + C+ L CP+C+ + S
Sbjct: 19 QKILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 42.8 bits (100), Expect = 1e-07
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 39 NLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQL-HGTCPICRQTLH 87
+ C C + +++ + C H C++ G CP C L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 41.8 bits (98), Expect = 2e-07
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 86
L+C C + + + LPC H + C+E CPIC+
Sbjct: 7 LRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 41.6 bits (97), Expect = 3e-07
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 40 LQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGT-CPICRQTLHSE 89
++C +C E +D+ C + C CP CR+ +
Sbjct: 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 41.4 bits (97), Expect = 7e-07
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 21 VHNTTRNPALVQVRTDDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TC 79
+H +T+ A+ ++ C +C + C H + CI L++ G C
Sbjct: 5 IHLSTKLLAVDFPAHFVKSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYC 61
Query: 80 PICRQTLHSESAES 93
P CR ES
Sbjct: 62 PSCRYPCFPTDLES 75
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 37.5 bits (86), Expect = 1e-05
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 36 DDSNLQCSVCWEQFTLDE--AVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQT 85
D+ C +C E+ + A H C+ WL + C IC
Sbjct: 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 38.2 bits (88), Expect = 1e-05
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 37 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 90
+ L+CS C + C+H + + C+ + CP+C +
Sbjct: 20 EKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDC--IGTGCPVCYTPAWIQD 69
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 37.7 bits (86), Expect = 3e-05
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 5/37 (13%)
Query: 52 DEAVRKLPCDHFYHTPCIEPWLQ-----LHGTCPICR 83
R C H +H C+ CP C+
Sbjct: 53 MVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 37.0 bits (85), Expect = 4e-05
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 41 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--------TCPICRQTLHS 88
C +C ++ +++ C + T C++ +++L +CP
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 30.5 bits (68), Expect = 0.006
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 40 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 90
+ C++ + V + +E +++ G PI + L E
Sbjct: 1 MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 27.7 bits (61), Expect = 0.086
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 38 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 90
+C + E + V + Y I+ WL TCP ++TL
Sbjct: 7 EYFRCPISLELMK--DPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia
pestis [TaxId: 632]}
Length = 141
Score = 27.3 bits (60), Expect = 0.21
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 20 SVHNTTRNPALVQVRTDDSN 39
SV NT P L+Q R D N
Sbjct: 27 SVKNTQDYPVLIQSRIYDEN 46
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella
typhimurium [TaxId: 90371]}
Length = 128
Score = 26.4 bits (58), Expect = 0.41
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 20 SVHNTTRNPALVQVRTDDSN 39
SV N P LVQ ++
Sbjct: 26 SVSNPQNYPILVQSSVKAAD 45
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.4 bits (52), Expect = 1.7
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 12/60 (20%)
Query: 36 DDSNLQCSVCWEQFTLDEAVRKLPCDH---FYHTPCIEPWLQLHGT--------CPICRQ 84
+ L C VC Q T+ + + C YH C +P + C C +
Sbjct: 13 MEMGLACVVC-RQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 23.0 bits (49), Expect = 4.6
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 36 DDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT----CPICRQTLHSESA 91
DDS C VC + + V C+ +H C P LQ C +C +
Sbjct: 4 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE 60
Query: 92 E 92
+
Sbjct: 61 D 61
>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,
terpredoxin [TaxId: 306]}
Length = 105
Score = 23.0 bits (49), Expect = 7.2
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 6/52 (11%)
Query: 50 TLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGE 101
+L E + C CR + E +G A E
Sbjct: 22 SLMEVATQNGVPGIVAECGG------SCVCATCRIEIEDAWVEIVGEANPDE 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.449
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,466
Number of extensions: 15038
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 38
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)