Query psy8623
Match_columns 68
No_of_seqs 117 out of 1228
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 23:32:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvn_A Mn-cadherin; strand dim 99.8 1.4E-20 5E-25 95.7 7.0 64 1-67 22-86 (99)
2 1zxk_A Cadherin-8; strand dime 99.8 3E-20 1E-24 94.3 7.1 61 2-65 22-82 (98)
3 2ee0_A Protocadherin-9; Ca dom 99.8 3.2E-20 1.1E-24 96.3 4.6 67 1-67 33-101 (114)
4 2yst_A Protocadherin-7; BH-PCD 99.8 1.9E-20 6.6E-25 97.6 3.5 67 1-67 33-100 (119)
5 3k6i_A T-cadherin; cell adhesi 99.8 1E-18 3.6E-23 88.7 6.5 63 1-67 21-86 (99)
6 3k6f_A T-cadherin; cell adhesi 99.8 1E-18 3.5E-23 88.9 5.3 63 1-67 22-87 (100)
7 2omz_B Epithelial-cadherin; le 99.8 1.7E-18 5.8E-23 88.8 5.7 64 1-67 25-91 (105)
8 3k6d_A T-cadherin; cell adhesi 99.7 2E-18 6.8E-23 87.7 4.9 63 1-67 21-86 (99)
9 3mvs_A Cadherin-23, otocadheri 99.7 2E-17 6.9E-22 93.0 7.3 63 1-66 128-190 (210)
10 2yqg_A Desmoglein-2, HDGC; cad 99.7 2.2E-18 7.6E-23 90.4 1.4 65 2-67 32-99 (123)
11 1ncg_A N-cadherin; cell adhesi 99.7 6.4E-17 2.2E-21 83.4 6.3 64 4-67 23-89 (110)
12 2a4e_A Cadherin-11; dimer, cal 99.7 7.4E-17 2.5E-21 91.2 6.5 63 1-66 126-192 (215)
13 3qrb_A Cadherin-1; cell adhesi 99.7 6.8E-17 2.3E-21 90.9 5.2 67 1-67 127-200 (213)
14 2x2u_A Proto-oncogene tyrosine 99.7 9.9E-18 3.4E-22 96.2 1.8 65 1-67 158-223 (246)
15 4apx_B Protocadherin-15, otoca 99.7 8E-17 2.7E-21 92.4 4.9 64 4-67 154-221 (242)
16 3lnd_A CDH6 protein, cadherin 99.7 1.1E-16 3.9E-21 89.8 5.2 63 1-66 125-191 (207)
17 3ppe_A Vascular endothelial ca 99.7 5.4E-16 1.9E-20 86.9 7.5 63 1-67 123-190 (203)
18 2qvi_A Cadherin-2; beta barrel 99.6 8.2E-17 2.8E-21 90.9 3.8 66 1-66 127-198 (215)
19 2a62_A Cadherin-8; extracellul 99.6 1.5E-16 5E-21 94.3 4.5 67 1-68 234-304 (322)
20 3q2w_A Cadherin-2; cell adhesi 99.6 9.6E-16 3.3E-20 95.8 8.1 66 1-68 357-426 (559)
21 3k5r_A Cadherin 13; mouse, str 99.6 3.2E-16 1.1E-20 88.5 5.1 64 1-64 127-200 (218)
22 2qvi_A Cadherin-2; beta barrel 99.6 2.2E-15 7.5E-20 85.0 8.4 66 2-67 19-87 (215)
23 3q2v_A Cadherin-1; cell adhesi 99.6 1.1E-15 3.9E-20 95.3 7.2 65 1-67 351-420 (550)
24 2a4e_A Cadherin-11; dimer, cal 99.6 2.4E-15 8.3E-20 84.9 7.1 59 5-65 25-83 (215)
25 1l3w_A EP-cadherin, C-cadherin 99.6 2.5E-15 8.4E-20 93.8 7.2 65 1-67 357-425 (546)
26 3ubh_A Neural-cadherin; cell a 99.6 4.5E-15 1.5E-19 90.2 6.9 62 1-68 344-406 (419)
27 2a62_A Cadherin-8; extracellul 99.6 2.6E-15 8.9E-20 88.9 5.4 64 1-67 125-192 (322)
28 1q55_A EP-cadherin, C-cadherin 99.6 8.9E-15 3.1E-19 95.3 7.2 65 1-67 506-574 (880)
29 3ubf_A Neural-cadherin; cell a 99.6 1.1E-14 3.7E-19 85.9 6.9 63 1-66 127-189 (316)
30 3lnd_A CDH6 protein, cadherin 99.5 9.1E-16 3.1E-20 86.1 1.6 61 2-65 22-82 (207)
31 3qrb_A Cadherin-1; cell adhesi 99.5 2.2E-14 7.5E-19 80.7 5.8 63 2-67 22-87 (213)
32 1l3w_A EP-cadherin, C-cadherin 99.5 9.8E-15 3.3E-19 91.1 4.7 67 1-67 133-206 (546)
33 3ppe_A Vascular endothelial ca 99.5 5.8E-14 2E-18 78.6 7.0 60 2-66 22-81 (203)
34 3ubh_A Neural-cadherin; cell a 99.5 7E-14 2.4E-18 85.0 6.6 65 1-66 11-86 (419)
35 3q2v_A Cadherin-1; cell adhesi 99.5 2.4E-14 8.1E-19 89.4 4.2 67 1-67 127-200 (550)
36 1q55_A EP-cadherin, C-cadherin 99.5 4E-14 1.4E-18 92.3 4.7 67 1-67 282-355 (880)
37 3ubf_A Neural-cadherin; cell a 99.5 2.1E-13 7.3E-18 80.4 7.2 61 1-64 233-296 (316)
38 3q2w_A Cadherin-2; cell adhesi 99.5 3.9E-14 1.3E-18 88.6 3.7 65 1-65 127-197 (559)
39 3k5r_A Cadherin 13; mouse, str 99.5 7.6E-14 2.6E-18 78.7 4.6 62 2-67 23-87 (218)
40 3mvs_A Cadherin-23, otocadheri 99.4 4.6E-14 1.6E-18 79.3 2.8 62 1-66 29-90 (210)
41 2x2u_A Proto-oncogene tyrosine 99.4 2.5E-14 8.6E-19 82.1 -1.4 64 1-66 22-105 (246)
42 1wyj_A Protocadherin beta 14; 99.3 1.6E-13 5.5E-18 72.1 -0.7 59 1-62 27-92 (125)
43 1wuz_A Pcdha4 protein, CNR-EC1 99.0 3.6E-12 1.2E-16 64.9 -2.9 58 1-60 19-84 (103)
44 4apx_B Protocadherin-15, otoca 98.4 2E-07 6.8E-12 53.4 3.8 55 6-62 42-99 (242)
45 2jtd_A Myomesin-1, skelemin; i 78.2 5.8 0.0002 20.9 6.3 31 29-59 85-116 (142)
46 2yhg_A SDE_182CT, cellulose-bi 74.9 13 0.00044 23.3 7.0 57 7-67 365-425 (437)
47 1op4_A Neural-cadherin; beta s 61.8 17 0.00058 19.6 6.4 31 30-62 78-108 (159)
48 1row_A SSP-19, MSP-domain prot 48.1 25 0.00086 17.5 5.2 24 15-40 29-52 (109)
49 1m1s_A WR4; structural genomic 40.5 37 0.0013 17.2 5.8 25 14-40 36-60 (116)
50 1msp_A MSP, major sperm protei 38.5 40 0.0014 17.0 5.4 25 14-40 38-62 (126)
51 1z9l_A Vesicle-associated memb 37.6 41 0.0014 16.9 5.5 24 15-40 41-64 (128)
52 2kpn_A Bacillolysin; solution 33.2 46 0.0016 16.4 2.6 34 32-65 35-72 (103)
53 2cri_A Vesicle-associated memb 32.6 56 0.0019 16.9 5.3 23 15-39 45-67 (147)
54 3enb_A PRE-mRNA-processing-spl 30.6 36 0.0012 19.3 2.1 15 29-43 38-52 (222)
55 3nqz_A MCP-02, secreted metall 29.9 52 0.0018 17.7 2.7 30 14-43 141-174 (180)
56 2dkm_A Collagen alpha-1(XX) ch 29.3 50 0.0017 15.4 2.9 17 49-65 69-85 (104)
57 1wic_A Hypothetical protein ri 26.8 76 0.0026 16.6 5.4 24 15-40 49-72 (152)
58 3e9l_A PRE-mRNA-processing-spl 26.2 47 0.0016 19.3 2.1 15 29-43 47-61 (257)
59 1j8k_A Fibronectin; EDA, TYPEI 25.9 55 0.0019 14.7 2.7 17 49-65 63-79 (94)
60 3kvp_A Uncharacterized protein 25.5 60 0.0021 15.1 3.0 19 28-46 40-58 (72)
61 3sbt_A PRE-mRNA-splicing facto 25.5 50 0.0017 19.2 2.1 15 29-43 46-60 (260)
62 1u2c_A Dystroglycan; IG-like d 23.8 1.1E+02 0.0039 17.7 7.0 45 17-63 33-79 (246)
63 2hc5_A ORF 99, hypothetical pr 22.6 65 0.0022 16.3 2.1 27 14-40 55-81 (117)
64 1k85_A Chitinase A1; fibronect 21.4 68 0.0023 14.2 3.4 17 49-65 59-75 (88)
65 2y72_A Collagenase, collagenas 20.2 80 0.0027 14.5 3.1 19 47-65 54-72 (85)
66 2fhz_B Colicin-E5; protein-pro 20.1 83 0.0028 15.7 2.1 15 29-43 72-86 (108)
No 1
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.83 E-value=1.4e-20 Score=95.71 Aligned_cols=64 Identities=30% Similarity=0.421 Sum_probs=56.6
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECC-cCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG-KET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g-~~~ 67 (68)
|++|. +|+|.| |+.|+|+|...... +.|.|++.+|.|++.++||||....|++.|.|+|.| +|+
T Consensus 22 v~~v~-~D~D~g-Ng~v~Ysi~~~~~~-~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~~p~ 86 (99)
T 1zvn_A 22 VGKLH-SDMDRG-DGSIKYILSGEGAG-IVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRP 86 (99)
T ss_dssp EEECC-BTTCCS-SSCEEEEEEETTBT-TTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCB
T ss_pred EEEEE-ECCCCC-CCEEEEEEeCCCCC-ceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCCCCC
Confidence 35777 999999 99999999875432 689999999999999999999999999999999998 464
No 2
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.83 E-value=3e-20 Score=94.35 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=52.8
Q ss_pred EEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCc
Q psy8623 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGK 65 (68)
Q Consensus 2 ~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~ 65 (68)
+++. +|+|.| |+.|+|+|.+... .++|.||+.||.|++.++||||....|++.|.|+|.|.
T Consensus 22 ~~v~-~D~D~g-N~~v~Ysi~~~~~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~ 82 (98)
T 1zxk_A 22 GRLH-TDLDPG-SKKIKYILSGDGA-GTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET 82 (98)
T ss_dssp EECC-BCCCCC---CEEEEEEETTB-TTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred EEEE-ECCCCC-CCEEEEEEeCCCC-CCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCC
Confidence 4565 999999 9999999987543 25899999999999999999999999999999999987
No 3
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=96.27 Aligned_cols=67 Identities=25% Similarity=0.452 Sum_probs=59.3
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCC--CCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPS--RTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~--~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|.|.|+.|+|+|....+ ...+|.|++.||.|++.++||||....|.+.|.|+|.|.|+
T Consensus 33 v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~~~ 101 (114)
T 2ee0_A 33 VIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP 101 (114)
T ss_dssp EEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEEESSSSSC
T ss_pred EEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCCcccCcEEEEEEEEEECCCCc
Confidence 46889999999999999999976432 23789999999999999999999999999999999999875
No 4
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-20 Score=97.62 Aligned_cols=67 Identities=28% Similarity=0.529 Sum_probs=60.0
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCC-CCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSR-TNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~-~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|.|.|+.|+|+|...... ..+|.|++.||.|++.+.||||....|.+.|.|+|.|.|+
T Consensus 33 v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~p~ 100 (119)
T 2yst_A 33 ILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP 100 (119)
T ss_dssp EEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEECCSBTTB
T ss_pred EEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCcccCCEEEEEEEEEECCCCC
Confidence 468899999999999999999876532 3689999999999999999999999999999999998875
No 5
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.77 E-value=1e-18 Score=88.71 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=55.1
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCC---CCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~---~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|++|.|+|+|. .|+|+|.+.. ...+.|.|++.||.|++.++||||....|.+.|.|+|.|+|+
T Consensus 21 v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~ 86 (99)
T 3k6i_A 21 VGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKI 86 (99)
T ss_dssp EEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEETTSCE
T ss_pred EEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEECCCCc
Confidence 46899999998 6999997531 223789999999999999999999999999999999999875
No 6
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.76 E-value=1e-18 Score=88.90 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=54.8
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCC---CCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~---~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|++|.|+|+|. .|+|+|.+.. .....|.|++.||.|++.++||||....|++.|.|+|.|+|+
T Consensus 22 v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~ 87 (100)
T 3k6f_A 22 VGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT 87 (100)
T ss_dssp EEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTCCE
T ss_pred EEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEECCCCc
Confidence 46899999998 5899997532 224789999999999999999999999999999999999875
No 7
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.76 E-value=1.7e-18 Score=88.78 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=54.2
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCC---CCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPS---RTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.| |.|.|+.|+|+|..... ..++|.||+.||.|++.++||||....|++.|.|+|.|.|+
T Consensus 25 v~~v~A---d~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g~p~ 91 (105)
T 2omz_B 25 LVQIKS---NKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNA 91 (105)
T ss_dssp EEECEE---GGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCB
T ss_pred EEEEEC---CCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECCCCc
Confidence 356777 34679999999987542 13689999999999999999999999999999999999875
No 8
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.75 E-value=2e-18 Score=87.69 Aligned_cols=63 Identities=29% Similarity=0.303 Sum_probs=54.7
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccC---CCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGES---PSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~---~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|++|.|+|+|. .|+|+|.+. ....+.|.|++.||.|++.++||||....|++.|.|+|.|+|+
T Consensus 21 v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~ 86 (99)
T 3k6d_A 21 VGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKT 86 (99)
T ss_dssp EEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTCCE
T ss_pred EEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEECCCCc
Confidence 46889999997 689999752 1224789999999999999999999999999999999998875
No 9
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=99.72 E-value=2e-17 Score=92.99 Aligned_cols=63 Identities=33% Similarity=0.586 Sum_probs=57.7
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKE 66 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~ 66 (68)
|+++.|+|+|.|.|+.++|+|.... ++|.|++.+|.|++.++||||....|.+.|.|+|.|++
T Consensus 128 v~~v~A~D~D~g~n~~v~Y~i~~~~---~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~ 190 (210)
T 3mvs_A 128 IFIVNATDPDLGAGGSVLYSFQPPS---PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKT 190 (210)
T ss_dssp EEECCEECCSSGGGGCEEEEESSCC---SSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSS
T ss_pred EEEEEEEeCCCCCCceEEEEEeCCC---CCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCC
Confidence 4688999999999999999998654 68999999999999999999999999999999999853
No 10
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-18 Score=90.39 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=56.3
Q ss_pred EEEEEEeCCCCCCeEEEEEeccCC---CCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 2 LRVSASDPDCGVNAMVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 2 ~~v~A~D~D~g~~~~i~y~i~~~~---~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
++|. +|+|.|.|+.|+|+|.... ....+|.|++.||.|++.+.||||....|.+.|.|+|.|.|+
T Consensus 32 ~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~ 99 (123)
T 2yqg_A 32 AKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNN 99 (123)
T ss_dssp BCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTBSEEEEEEEEECTTCCE
T ss_pred EEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccCceEEEEEEEEECCCCc
Confidence 4566 5999999999999998752 223789999999999999999999999999999999998764
No 11
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.69 E-value=6.4e-17 Score=83.39 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=55.2
Q ss_pred EEEEeCCCCCCeEEEEEeccCC---CCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 4 VSASDPDCGVNAMVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 4 v~A~D~D~g~~~~i~y~i~~~~---~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|.+.|.|.|.|+.|+|+|.... ...++|.|++.||.|++.++||||....|++.|.|+|.|.|+
T Consensus 23 v~~vd~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~ 89 (110)
T 1ncg_A 23 LVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ 89 (110)
T ss_dssp EEECCCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCB
T ss_pred EEEEeCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEEECCCCc
Confidence 4555888889999999998632 223789999999999999999999999999999999998764
No 12
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=99.69 E-value=7.4e-17 Score=91.15 Aligned_cols=63 Identities=30% Similarity=0.458 Sum_probs=57.6
Q ss_pred CEEEEEEeCCC---CCCeEEEEEeccCCCCCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcC
Q psy8623 1 MLRVSASDPDC---GVNAMVNYTLGESPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKE 66 (68)
Q Consensus 1 v~~v~A~D~D~---g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~ 66 (68)
|+++.|+|+|. |.|+.++|+|..+. .+|.|++.+|.|++. +.||||....|.+.|.|+|.|.|
T Consensus 126 v~~v~A~D~D~~~~G~n~~i~Y~i~~~~---~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~ 192 (215)
T 2a4e_A 126 VIQVTASDADDPTYGNSAKLVYSILEGQ---PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGH 192 (215)
T ss_dssp EEECCEECSSCTTTCSSSCCEEEEEEST---TTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTC
T ss_pred EEEEEEEECCCCCCCCceEEEEEEeCCC---CcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCC
Confidence 46889999997 88999999998765 589999999999998 89999999999999999999876
No 13
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.67 E-value=6.8e-17 Score=90.94 Aligned_cols=67 Identities=33% Similarity=0.436 Sum_probs=58.5
Q ss_pred CEEEEEEeCCCC---CCeEEEEEeccCCC---CCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCG---VNAMVNYTLGESPS---RTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g---~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|.| .|+.++|+|....+ ...+|.|++.+|.|.+. +.||||....|.+.|.|+|.|.|+
T Consensus 127 v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~ 200 (213)
T 3qrb_A 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG 200 (213)
T ss_dssp EEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTS
T ss_pred EEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCC
Confidence 468999999998 88999999976532 23689999999999987 789999999999999999998775
No 14
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=99.67 E-value=9.9e-18 Score=96.24 Aligned_cols=65 Identities=25% Similarity=0.112 Sum_probs=56.1
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEE-CCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATD-RGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d-~g~~~ 67 (68)
|++|.|+|+|.|.|+.|+|+|..+.. .+|.|++.+|.|++.+.||||....|.+.|.|+| .|+|+
T Consensus 158 v~~v~A~D~D~g~n~~i~Y~i~~~~~--~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~ 223 (246)
T 2x2u_A 158 HQFRLLPVQFLCPQISVAYRLLEGEG--LPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGARE 223 (246)
T ss_dssp EECSCHHHHHHCTTSCEEEEEESCTT--SSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CC
T ss_pred EEEEEEEcCCCCCCcEEEEEEccCCC--CCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCc
Confidence 35678999999999999999987752 7899999999999999999999999999999998 55554
No 15
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.66 E-value=8e-17 Score=92.45 Aligned_cols=64 Identities=23% Similarity=0.493 Sum_probs=56.4
Q ss_pred EEEEeCCCCCCeEEEEEeccCCCC---CCcEEEeC-CccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 4 VSASDPDCGVNAMVNYTLGESPSR---TNHFYMKS-VSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 4 v~A~D~D~g~~~~i~y~i~~~~~~---~~~f~id~-~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
+.|+|+|.|.|+.|+|+|..+... ...|.|+. .||.|++.+.||||....|.|.|.|+|+|.|+
T Consensus 154 v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~ 221 (242)
T 4apx_B 154 NGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNL 221 (242)
T ss_dssp TSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSG
T ss_pred cccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCc
Confidence 569999999999999999876532 25799995 59999999999999999999999999999875
No 16
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.66 E-value=1.1e-16 Score=89.77 Aligned_cols=63 Identities=32% Similarity=0.463 Sum_probs=55.6
Q ss_pred CEEEEEEeCCC---CCCeEEEEEeccCCCCCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcC
Q psy8623 1 MLRVSASDPDC---GVNAMVNYTLGESPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKE 66 (68)
Q Consensus 1 v~~v~A~D~D~---g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~ 66 (68)
|+++.|+|+|. |.|+.++|+|..+. .+|.|++.+|.|++. +.||||....|.+.|.|+|.|.|
T Consensus 125 v~~v~A~D~D~~~~g~n~~i~Y~i~~~~---~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~ 191 (207)
T 3lnd_A 125 VVQVTATDADDPTYGNSAKVVYSILQGQ---PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQ 191 (207)
T ss_dssp EEECCEECSSCTTSSSTTCCEEEEEESG---GGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGC
T ss_pred EEEEEEEeCCCCCCCCCcEEEEEEcCCC---CCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCC
Confidence 46889999998 88899999998765 589999999999998 89999999999999999999876
No 17
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.65 E-value=5.4e-16 Score=86.86 Aligned_cols=63 Identities=38% Similarity=0.467 Sum_probs=56.0
Q ss_pred CEEEEEEeCC---CCCCeEEEEEeccCCCCCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEEC-CcCC
Q psy8623 1 MLRVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDR-GKET 67 (68)
Q Consensus 1 v~~v~A~D~D---~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~-g~~~ 67 (68)
|+++.|+|+| .|.|+.+.|+|..+. .+|.|+ .+|.|++. +.||||....|.+.|.|+|. |.|+
T Consensus 123 v~~v~A~D~D~~~~g~n~~i~Y~i~~~~---~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~ 190 (203)
T 3ppe_A 123 VTKVTAEDADDPTVAGHATVTYQIIKGN---EYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTG 190 (203)
T ss_dssp EEECCEECCSCTTSSSTTCEEEEEEEST---TTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCC
T ss_pred EEEEEEEcCCCcCCCCceEEEEEEeCCC---CcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCC
Confidence 4689999999 478999999998775 589999 99999998 99999999999999999998 5543
No 18
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.65 E-value=8.2e-17 Score=90.89 Aligned_cols=66 Identities=27% Similarity=0.417 Sum_probs=58.2
Q ss_pred CEEEEEEeCCC--CCCeEEEEEeccCCC---CCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcC
Q psy8623 1 MLRVSASDPDC--GVNAMVNYTLGESPS---RTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKE 66 (68)
Q Consensus 1 v~~v~A~D~D~--g~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~ 66 (68)
|+++.|+|+|. |.|+.++|+|..+.+ ...+|.|++.+|.|++. ++||||....|.+.|.|+|.|+|
T Consensus 127 v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~ 198 (215)
T 2qvi_A 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGN 198 (215)
T ss_dssp EEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTC
T ss_pred EEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCC
Confidence 46889999998 789999999987652 23789999999999986 78999999999999999999877
No 19
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=99.64 E-value=1.5e-16 Score=94.28 Aligned_cols=67 Identities=31% Similarity=0.465 Sum_probs=57.5
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEe----CCccEEEEeecCCCCCCceEEEEEEEEECCcCCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMK----SVSGEICIAQDLDFESRSSYEFPVVATDRGKETQ 68 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id----~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~~ 68 (68)
|++|.|+|+|.|.|+.++|+|..+.. .++|.|+ ..+|.|++.++||||....|++.|.|+|.|.|++
T Consensus 234 v~~v~A~D~D~g~n~~i~Y~i~~g~~-~~~F~I~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~g~pp~ 304 (322)
T 2a62_A 234 IGRVKANDQDIGENAQSSYDIIDGDG-TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPR 304 (322)
T ss_dssp EEEEECCCSSCGGGTCCEEEEC---C-CSSBCCBCCTTTSEEEEEBCSCCCCSSCCEEEEEEEEECCCSSCT
T ss_pred EEEEEEEeCCCCCCceEEEEEECCCC-CCcEEEeccCCCceEEEEECCcCCcccCCeEEEEEEEEECCCCCc
Confidence 46899999999999999999976543 2789998 4689999999999999999999999999998763
No 20
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=99.64 E-value=9.6e-16 Score=95.79 Aligned_cols=66 Identities=29% Similarity=0.417 Sum_probs=59.6
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCC----ceEEEEEEEEECCcCCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRGKETQ 68 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~----~~~~~~v~a~d~g~~~~ 68 (68)
|++|.|+|+|.|.|+.++|+|..... .+|.|++.+|.|++.+.||||.. ..|++.|.|+|.|.|+.
T Consensus 357 v~~v~A~D~D~g~n~~i~Ysi~~~~~--~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p~~ 426 (559)
T 3q2w_A 357 LTTLTAQDPDRYMQQNIRYTKLSDPA--NWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPM 426 (559)
T ss_dssp EEECCEECSCSSSCCCEEEEEEECTT--CCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSSCC
T ss_pred EEEEEEECCCCCCCCceEEEEccCCc--cceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCCCcc
Confidence 46899999999999999999987654 79999999999999999999975 89999999999998863
No 21
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.63 E-value=3.2e-16 Score=88.46 Aligned_cols=64 Identities=30% Similarity=0.493 Sum_probs=55.6
Q ss_pred CEEEEEEeCCC--CCCeEEEEEeccCCCC---CCcEEEeCCccEEEEe---ecCCCCC--CceEEEEEEEEECC
Q psy8623 1 MLRVSASDPDC--GVNAMVNYTLGESPSR---TNHFYMKSVSGEICIA---QDLDFES--RSSYEFPVVATDRG 64 (68)
Q Consensus 1 v~~v~A~D~D~--g~~~~i~y~i~~~~~~---~~~f~id~~tG~i~~~---~~ld~e~--~~~~~~~v~a~d~g 64 (68)
|++|.|+|+|. |.|+.++|+|....+. .++|.|++.+|.|.+. +.||||. ...|.+.|.|+|.|
T Consensus 127 v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~g 200 (218)
T 3k5r_A 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMA 200 (218)
T ss_dssp EEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECS
T ss_pred EEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECC
Confidence 46889999999 7899999999875532 2679999999999887 6899999 66999999999998
No 22
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.63 E-value=2.2e-15 Score=85.04 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=58.4
Q ss_pred EEEEEEeCCCCCCeEEEEEeccCCC---CCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 2 LRVSASDPDCGVNAMVNYTLGESPS---RTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 2 ~~v~A~D~D~g~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
.++.|.|.|.+.|+.++|+|.+... ..++|.|++.+|.|++.++||||....|.+.|.|+|.|+|+
T Consensus 19 ~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~ 87 (215)
T 2qvi_A 19 QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ 87 (215)
T ss_dssp EEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCC
T ss_pred EEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECCCCc
Confidence 5788899999999999999986531 23789999999999999999999999999999999999875
No 23
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=95.33 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=59.4
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCC-----ceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR-----SSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~-----~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|.|.|+.++|+|..... .+|.|++.+|.|++.+.||||.. ..|++.|.|+|.|.|+
T Consensus 351 v~~v~A~D~D~g~n~~i~y~i~~~~~--~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g~p~ 420 (550)
T 3q2v_A 351 ITSYTAREPDTFMDQKITYRIWRDTA--NWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPI 420 (550)
T ss_dssp EEECCEECCCCSTTCCCEEEEEECTT--CCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEEEECCSSSC
T ss_pred EEEEeCCCCCCCCCCCEEEEEecCCC--CcEEEeCCCcEEEECCccCcccccccCCCEEEEEEEEEeCCCCc
Confidence 46789999999999999999977644 78999999999999999999988 8999999999999886
No 24
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=99.61 E-value=2.4e-15 Score=84.93 Aligned_cols=59 Identities=31% Similarity=0.450 Sum_probs=52.5
Q ss_pred EEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCc
Q psy8623 5 SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGK 65 (68)
Q Consensus 5 ~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~ 65 (68)
.|+|+|.| ++.++|+|.+... ..+|.|++.+|.|++.+.||||....|.+.|.|+|.+.
T Consensus 25 va~D~D~g-n~~i~Y~l~~~~~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~ 83 (215)
T 2a4e_A 25 LHSDIDSG-DGNIKYILSGEGA-GTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDT 83 (215)
T ss_dssp CCCTTCCS-SSCEEEEEEETTB-TTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred EEECCCCC-CCeEEEEEECCCC-CCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCC
Confidence 38999998 7889999987642 26899999999999999999999999999999999875
No 25
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=99.60 E-value=2.5e-15 Score=93.80 Aligned_cols=65 Identities=25% Similarity=0.419 Sum_probs=59.0
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCC----ceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~----~~~~~~v~a~d~g~~~ 67 (68)
|++|.|+|+|.|.|+.++|+|..+.. ++|.|++.+|.|++.+.||||.. ..|++.|.|+|.|.|+
T Consensus 357 v~~v~A~D~D~g~n~~i~ysi~~~~~--~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~p~ 425 (546)
T 1l3w_A 357 IISLVAQDPDKQQIQKLSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV 425 (546)
T ss_dssp EEECCEECCCTTCCCCEEEEECCCSS--CCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSC
T ss_pred EEEEEEECCCCCCCceEEEEECCCCC--CcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEECCCCC
Confidence 46789999999999999999987643 78999999999999999999987 8999999999999775
No 26
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=99.58 E-value=4.5e-15 Score=90.20 Aligned_cols=62 Identities=39% Similarity=0.665 Sum_probs=56.0
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCC-CceEEEEEEEEECCcCCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-RSSYEFPVVATDRGKETQ 68 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~-~~~~~~~v~a~d~g~~~~ 68 (68)
|++|.|+|+|.|.|+.++|+|.. ++|.|++ +|.|++.+.||+|. ...|++.|.|+|.|.|+.
T Consensus 344 v~~v~A~D~D~g~n~~v~Y~i~~-----~~F~Id~-~G~i~~~~~ld~E~~~~~y~l~V~a~D~G~p~~ 406 (419)
T 3ubh_A 344 ILRVKAMDSDSGSNAEIEYLVSD-----DHFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPK 406 (419)
T ss_dssp EEECCEECSSCGGGGCEEEEESC-----TTEEECT-TCEEEECSCSSSSCTTCEEEEEEEEEECCSSCC
T ss_pred EEEEEEEeCCCCCCCEEEEEEcC-----CcEEECC-CeEEEECcccCcccCCceEEEEEEEEECCcCCc
Confidence 46899999999999999999963 4699998 89999999999998 688999999999999874
No 27
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=99.58 E-value=2.6e-15 Score=88.92 Aligned_cols=64 Identities=27% Similarity=0.375 Sum_probs=57.4
Q ss_pred CEEEEEEeCCC---CCCeEEEEEeccCCCCCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDC---GVNAMVNYTLGESPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~---g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|. |.|+.++|+|..+. .+|.|++.+|.|++. +.||||....|.+.|.|+|.|.|+
T Consensus 125 v~~v~A~D~D~~~~G~n~~i~Y~i~~~~---~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~ 192 (322)
T 2a62_A 125 VTNVTATDADDPVYGNSAKLVYSILEGQ---PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHS 192 (322)
T ss_dssp CCCCCCCBCSCSSSTTSSCEEEEEEECT---TTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSS
T ss_pred EEEEEEEeCCCCCCCccEEEEEEEccCC---CCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCC
Confidence 45788999996 88899999998765 689999999999998 889999999999999999999774
No 28
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=99.56 E-value=8.9e-15 Score=95.28 Aligned_cols=65 Identities=25% Similarity=0.419 Sum_probs=59.0
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCC----ceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~----~~~~~~v~a~d~g~~~ 67 (68)
|++|.|+|+|.|.|+.++|+|..+.. ++|.|++.+|.|++.+.||||.. ..|++.|.|+|.|.|+
T Consensus 506 V~~v~A~D~D~g~n~~v~Ysi~~~~~--~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~p~ 574 (880)
T 1q55_A 506 IISLVAQDPDKQQIQKLSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV 574 (880)
T ss_dssp EEECCEECCCTTCCCCEEEEECCCSS--CCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSC
T ss_pred EEEEEEEeCCCCCCCcEEEEECCCCC--CCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEECCCCC
Confidence 46889999999999999999987653 79999999999999999999986 8999999999998775
No 29
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=99.56 E-value=1.1e-14 Score=85.87 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=55.0
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKE 66 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~ 66 (68)
|+++.|+|+|.|.| ++|+|..+.. .++|.|++.+|.|++.++||+|....|.+.|.|+|.|++
T Consensus 127 v~~v~A~D~D~g~n--i~Y~i~~~~~-~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~ 189 (316)
T 3ubf_A 127 VFTLQARDPDTDHN--IHYFIVRDRT-GGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGK 189 (316)
T ss_dssp EEECCEECSSTTCC--EEEEEEEEES-SSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-
T ss_pred EEEEEEECCCCCCc--eEEEEEeCCC-CCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCC
Confidence 46889999999877 9999976432 278999999999999999999999999999999999853
No 30
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.55 E-value=9.1e-16 Score=86.07 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=49.2
Q ss_pred EEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCc
Q psy8623 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGK 65 (68)
Q Consensus 2 ~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~ 65 (68)
+++ |+|+|.| ++.++|+|..... ..+|.|++.+|.|++.+.||||....|.+.|.|+|.|.
T Consensus 22 ~~~-a~D~D~g-~~~i~Y~l~~~~~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~ 82 (207)
T 3lnd_A 22 GKL-HSDQDRG-DGSLKYILSGDGA-GDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRT 82 (207)
T ss_dssp EEC-CCTTCCS-STTBCCCCCSSSB-TTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSS
T ss_pred EEE-EeCCCCC-CceEEEEEECCCC-CCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCC
Confidence 344 8999998 6779999986553 25899999999999999999999999999999999874
No 31
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.52 E-value=2.2e-14 Score=80.68 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=51.9
Q ss_pred EEEEEEeCCCCCCeEEEEEeccCCC---CCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 2 LRVSASDPDCGVNAMVNYTLGESPS---RTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 2 ~~v~A~D~D~g~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
+++.| |+| .|+.++|+|.+... ..++|.|++.||.|++.++||||....|.+.|.|+|.|+|+
T Consensus 22 ~~v~a-D~d--~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~ 87 (213)
T 3qrb_A 22 VQIKS-NRD--KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA 87 (213)
T ss_dssp EECCC-GGG--GTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCB
T ss_pred EEEEE-CCC--CCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEeCCCCc
Confidence 34555 555 48889999987432 23689999999999999999999999999999999998764
No 32
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=99.52 E-value=9.8e-15 Score=91.11 Aligned_cols=67 Identities=28% Similarity=0.397 Sum_probs=58.1
Q ss_pred CEEEEEEeCCCC---CCeEEEEEeccCCC---CCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCG---VNAMVNYTLGESPS---RTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g---~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|.| .|+.++|+|....+ ...+|.|++.||.|++. +.||||....|.+.|+|+|+|+|+
T Consensus 133 v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~ 206 (546)
T 1l3w_A 133 VMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG 206 (546)
T ss_dssp EEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTS
T ss_pred EEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCC
Confidence 467899999998 68999999987653 23789999999999986 789999999999999999988764
No 33
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.51 E-value=5.8e-14 Score=78.60 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=52.0
Q ss_pred EEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcC
Q psy8623 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKE 66 (68)
Q Consensus 2 ~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~ 66 (68)
+++. +|+|.|.+ +|+|...... .+|.|++.||.|++.+.||||....|.+.|.|+|.|.|
T Consensus 22 ~~v~-~D~D~g~~---~Y~i~~~~~~-~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~ 81 (203)
T 3ppe_A 22 GKLT-SSVGNKNA---MYIIEGESAN-TIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNN 81 (203)
T ss_dssp EECC-BCCCCTTE---EEEEEETTBT-TTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTT
T ss_pred EEEE-ecCCCCCc---EEEEecCCCC-CeEEEECCcCEEEECccccccccceEEEEEEEEECCCC
Confidence 3444 89999866 8999876542 68999999999999999999999999999999999875
No 34
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=99.49 E-value=7e-14 Score=84.97 Aligned_cols=65 Identities=17% Similarity=0.399 Sum_probs=55.0
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeC--------CccEEEEeecCCCCCC---ceEEEEEEEEECCcC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKS--------VSGEICIAQDLDFESR---SSYEFPVVATDRGKE 66 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~--------~tG~i~~~~~ld~e~~---~~~~~~v~a~d~g~~ 66 (68)
+.+|.|+|+|.|.|+.+.|+|...... ..|.|++ .+|.|++.+.||||.. ..|.+.|.|+|.|.|
T Consensus 11 v~~v~AtD~D~g~n~~v~Ysi~~~~~~-~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~ 86 (419)
T 3ubh_A 11 TKRIEFTEADGDTEGKSVFQLEKETDK-ETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHN 86 (419)
T ss_dssp EEEEEEEGGGGCSTTCEEEECCCSSTT-CEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEEEEEEEEC--CC
T ss_pred eEEEEEEcccCCCCceEEEEEecCCCC-ceEEEcCCCccEEECCCcEEEECCccCccccCccceEEEEEEEEeCCCC
Confidence 468999999999999999999776543 6788887 8999999999999986 689999999998754
No 35
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=99.48 E-value=2.4e-14 Score=89.42 Aligned_cols=67 Identities=33% Similarity=0.436 Sum_probs=57.6
Q ss_pred CEEEEEEeCCCC---CCeEEEEEeccCCC---CCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCG---VNAMVNYTLGESPS---RTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g---~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|.| .|+.++|+|..+.+ ...+|.|++.+|.|++. +.||||....|++.|+|+|+|+|+
T Consensus 127 v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~ 200 (550)
T 3q2v_A 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG 200 (550)
T ss_dssp EEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTS
T ss_pred EEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCC
Confidence 467899999998 78999999976532 23689999999999885 789999999999999999987764
No 36
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=99.47 E-value=4e-14 Score=92.27 Aligned_cols=67 Identities=28% Similarity=0.397 Sum_probs=58.1
Q ss_pred CEEEEEEeCCCC---CCeEEEEEeccCCC---CCCcEEEeCCccEEEEe-ecCCCCCCceEEEEEEEEECCcCC
Q psy8623 1 MLRVSASDPDCG---VNAMVNYTLGESPS---RTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 1 v~~v~A~D~D~g---~~~~i~y~i~~~~~---~~~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
|+++.|+|+|.| .|+.++|+|....+ ...+|.|++.||.|++. +.||||....|++.|+|+|+|+|+
T Consensus 282 V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~~~y~l~V~A~D~g~~~ 355 (880)
T 1q55_A 282 VMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG 355 (880)
T ss_dssp EEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTS
T ss_pred eEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHcceeEEEEEEEECCCCC
Confidence 468899999998 68999999987653 23789999999999986 789999999999999999988654
No 37
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=99.46 E-value=2.1e-13 Score=80.35 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=50.9
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCC---ceEEEEEEEEECC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR---SSYEFPVVATDRG 64 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~---~~~~~~v~a~d~g 64 (68)
|+++.|+|+| ++.++|+|.......++|.|++.+|.|++.+.||||.. ..|++.|.|+|.+
T Consensus 233 v~~v~A~D~D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~A~dd~ 296 (316)
T 3ubf_A 233 IISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS 296 (316)
T ss_dssp EEECCEECTT---CCCEEEEEEEESSCTTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEEEEESS
T ss_pred EEEEEEEeCC---CCEEEEEEEcCCCCCCeEEEECCeEEEEECCcCCccccCCCceEEEEEEEEECC
Confidence 4688999998 57899999732222378999999999999999999987 7999999999533
No 38
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=99.45 E-value=3.9e-14 Score=88.60 Aligned_cols=65 Identities=28% Similarity=0.408 Sum_probs=56.0
Q ss_pred CEEEEEEeCCCC--CCeEEEEEeccCCCC---CCcEEEeCCccEEEEee-cCCCCCCceEEEEEEEEECCc
Q psy8623 1 MLRVSASDPDCG--VNAMVNYTLGESPSR---TNHFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRGK 65 (68)
Q Consensus 1 v~~v~A~D~D~g--~~~~i~y~i~~~~~~---~~~f~id~~tG~i~~~~-~ld~e~~~~~~~~v~a~d~g~ 65 (68)
|+++.|+|+|.| .|+.++|+|....+. .++|.|++.+|.|.+.+ .||||....|.+.|+|+|+|+
T Consensus 127 v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g 197 (559)
T 3q2w_A 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEG 197 (559)
T ss_dssp EEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHH
T ss_pred EEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCC
Confidence 468899999997 689999999765431 26899999999999987 899999999999999999865
No 39
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.45 E-value=7.6e-14 Score=78.72 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=51.5
Q ss_pred EEEEEEeCCCCCCeEEEEEeccCC---CCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 2 LRVSASDPDCGVNAMVNYTLGESP---SRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 2 ~~v~A~D~D~g~~~~i~y~i~~~~---~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
+++.|.|+|. .++|+|.... ...++|.|++.+|.|++.+.||||....|.+.|.|+|.|+|+
T Consensus 23 ~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~ 87 (218)
T 3k5r_A 23 GKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT 87 (218)
T ss_dssp EECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSSCE
T ss_pred EEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCCCc
Confidence 4667777765 6899997532 223789999999999999999999999999999999988764
No 40
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=99.43 E-value=4.6e-14 Score=79.27 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=52.8
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEECCcC
Q psy8623 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGKE 66 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~ 66 (68)
|+++.|+|+|.+ .+.|+|..... .++|.|++.+|.|++.+.||||....|.+.|.|+|.+++
T Consensus 29 v~~v~A~D~D~~---~~~y~i~~~~~-~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~D~~~~ 90 (210)
T 3mvs_A 29 VTQLLARDMDND---PLVFGVSGEEA-SRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 90 (210)
T ss_dssp EEECCEECTTCC---CCEEEEESHHH-HHHEEECTTTCEEEESSCCCTTTCCEEEEEEEEECSSCE
T ss_pred EEEEEEEeCCCC---cEEEEEeCCCC-CCcEEEeCCCCEEEECCccCCcccceEEEEEEEEeCCCC
Confidence 468899999964 57899976432 268999999999999999999999999999999998653
No 41
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=99.36 E-value=2.5e-14 Score=82.09 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=48.5
Q ss_pred CEEEEEEeCCCCC--CeEEE------EEeccCCCCCCcEEEeCCccEEEEeecCCCCCCceE------------EEEEEE
Q psy8623 1 MLRVSASDPDCGV--NAMVN------YTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSY------------EFPVVA 60 (68)
Q Consensus 1 v~~v~A~D~D~g~--~~~i~------y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~------------~~~v~a 60 (68)
|++|.|+|+|.|. +..|. |++.... ..+|.|++.||.|++.++||||....| .+.|.|
T Consensus 22 v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~--~~~F~Id~~tG~i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a 99 (246)
T 2x2u_A 22 LLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHE--NNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFL 99 (246)
T ss_dssp EEECCEECSSTTCCCCCEECSEEECGGGCEEEE--CCSEEECTTTCEEEESSCBCHHHHHHHHHTSTTSCCCEEEEEEEC
T ss_pred EEEEEEEcCCCCCcceEEEeeccccceeccCCC--CCEEEECCCcEEEEECCcCChhHhhhhccccCCCcccceEEEEEE
Confidence 4689999999964 44554 5554432 278999999999999999999999999 999999
Q ss_pred EECCcC
Q psy8623 61 TDRGKE 66 (68)
Q Consensus 61 ~d~g~~ 66 (68)
+|.|.|
T Consensus 100 ~D~g~~ 105 (246)
T 2x2u_A 100 SPTSLR 105 (246)
T ss_dssp C-----
T ss_pred EcCCCC
Confidence 999876
No 42
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=1.6e-13 Score=72.07 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=48.5
Q ss_pred CEEEEEEeCCCCCCeEE---EEEeccCCCCCCcEEEeCCccEEEEeecCCCCCC----ceEEEEEEEEE
Q psy8623 1 MLRVSASDPDCGVNAMV---NYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATD 62 (68)
Q Consensus 1 v~~v~A~D~D~g~~~~i---~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~----~~~~~~v~a~d 62 (68)
|++| |+|+|.+. +.+ +|+|..+.. .++|.||+.||.|++.+.||||.. ..|.+.+.|.+
T Consensus 27 V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~-~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v~a~~ 92 (125)
T 1wyj_A 27 VGNL-AKDLGLSL-RELITRGAQILSKGN-KQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLL 92 (125)
T ss_dssp EEES-TTTTTCCH-HHHHHTTCEEECSSS-SCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCCEEEE
T ss_pred EEEE-EecCCCCC-CceeeEEEEEecCCC-CCeEEEECCccEEEECccccchhhcccCCcEEEEEEEEE
Confidence 3567 88888764 334 899976543 378999999999999999999998 89999999986
No 43
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.04 E-value=3.6e-12 Score=64.89 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=42.1
Q ss_pred CEEEEEEeCCCCCC--eEEEEEeccCCCCCCcEEEeCCccEEEEeecCCCCCCc------eEEEEEEE
Q psy8623 1 MLRVSASDPDCGVN--AMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRS------SYEFPVVA 60 (68)
Q Consensus 1 v~~v~A~D~D~g~~--~~i~y~i~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~------~~~~~v~a 60 (68)
|++| |.|+|.+.+ +.++|+|..+.. .++|.|++.||.|++.+.||||... .|.+.+.+
T Consensus 19 Vg~v-a~D~~~~~~~~~~~~y~i~~~~~-~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~ 84 (103)
T 1wuz_A 19 VGRI-AQDLGLELTELVPRLFRVASKDR-GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV 84 (103)
T ss_dssp CCCH-HHHHTCCHHHHTTTTBCCBCSSC-SCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEE
T ss_pred EEEE-EeccCCCCcccccEEEEEEeCCC-ccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEE
Confidence 3456 788876422 357899976543 3899999999999999999999742 45555544
No 44
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=98.44 E-value=2e-07 Score=53.44 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=42.1
Q ss_pred EEeCCCCCCeEEEEEeccCCCCCCcEEEeCCccEEEEe---ecCCCCCCceEEEEEEEEE
Q psy8623 6 ASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIA---QDLDFESRSSYEFPVVATD 62 (68)
Q Consensus 6 A~D~D~g~~~~i~y~i~~~~~~~~~f~id~~tG~i~~~---~~ld~e~~~~~~~~v~a~d 62 (68)
+.|.|.+.++.++|++..... .+|.+++.+|.+.+. +.||||....|.+.+.+.+
T Consensus 42 ~~~~d~~~n~~i~ysl~~~~~--~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~ 99 (242)
T 4apx_B 42 IKGTAGGPDPTIELSLKDNVD--YWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQ 99 (242)
T ss_dssp BSSCBSSSSCSEEEEEESCGG--GCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEE
T ss_pred ecCCCCCCCCEEEEEEecCCC--ceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEE
Confidence 345666788999999976554 689999999999874 6699998777665555544
No 45
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=78.17 E-value=5.8 Score=20.93 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=23.8
Q ss_pred CcEEEeCCccEEEEe-ecCCCCCCceEEEEEE
Q psy8623 29 NHFYMKSVSGEICIA-QDLDFESRSSYEFPVV 59 (68)
Q Consensus 29 ~~f~id~~tG~i~~~-~~ld~e~~~~~~~~v~ 59 (68)
.....|..+|.|.+. ..|..+....|++.++
T Consensus 85 ~ki~fD~~tGiIEmime~~~~edeGTyT~Qlq 116 (142)
T 2jtd_A 85 YKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQ 116 (142)
T ss_dssp CCEEECSSSCCEEEEECCCCTTTCCEEEEEEE
T ss_pred eeEeecccCChhhhhHhhcccccCceEEEEEe
Confidence 446778999998775 7788888888887763
No 46
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=74.88 E-value=13 Score=23.33 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=32.3
Q ss_pred EeCCCCCCeEEEEEe--ccCCC-CCCcEEEe-CCccEEEEeecCCCCCCceEEEEEEEEECCcCC
Q psy8623 7 SDPDCGVNAMVNYTL--GESPS-RTNHFYMK-SVSGEICIAQDLDFESRSSYEFPVVATDRGKET 67 (68)
Q Consensus 7 ~D~D~g~~~~i~y~i--~~~~~-~~~~f~id-~~tG~i~~~~~ld~e~~~~~~~~v~a~d~g~~~ 67 (68)
+|||. ..++|+= ..+.. ...-..|. ..+..+....+-. .....+.|+++++|.+.|.
T Consensus 365 sDPDG---D~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~ 425 (437)
T 2yhg_A 365 SDPDG---DSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPN 425 (437)
T ss_dssp BCTTC---CCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSC
T ss_pred eCCCC---CeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCC
Confidence 47763 3456653 33331 11234554 3444555554433 4568899999999998653
No 47
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=61.84 E-value=17 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEeCCccEEEEeecCCCCCCceEEEEEEEEE
Q psy8623 30 HFYMKSVSGEICIAQDLDFESRSSYEFPVVATD 62 (68)
Q Consensus 30 ~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d 62 (68)
.|.|+. .|.|++.+.+..-. ..-.+.|.|.|
T Consensus 78 dFkV~~-DGtVya~r~v~L~~-~~~~F~V~a~D 108 (159)
T 1op4_A 78 DFKVDE-DGTVYAVRSFPLTA-EQAKFLIYAQD 108 (159)
T ss_dssp EEEEET-TTEEEEESCCSCSS-SCEEEEEEEEE
T ss_pred CeEEeC-CCcEEEecceeecC-CCcEEEEEEEc
Confidence 599985 59999988864322 22366777777
No 48
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=48.15 E-value=25 Score=17.49 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=17.3
Q ss_pred eEEEEEeccCCCCCCcEEEeCCccEE
Q psy8623 15 AMVNYTLGESPSRTNHFYMKSVSGEI 40 (68)
Q Consensus 15 ~~i~y~i~~~~~~~~~f~id~~tG~i 40 (68)
.++.|++-...+ ..|.+.+.+|.|
T Consensus 29 ~~vaFKVKtT~p--~~y~VrP~~G~I 52 (109)
T 1row_A 29 EKIVFKIKSSNN--NEYRIAPVFGFV 52 (109)
T ss_dssp SCEEEEEEESCS--SSEEEECSEEEE
T ss_pred CeEEEEEEeCCC--CceEEcCCceEE
Confidence 467788865544 678999888854
No 49
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=40.49 E-value=37 Score=17.21 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=17.3
Q ss_pred CeEEEEEeccCCCCCCcEEEeCCccEE
Q psy8623 14 NAMVNYTLGESPSRTNHFYMKSVSGEI 40 (68)
Q Consensus 14 ~~~i~y~i~~~~~~~~~f~id~~tG~i 40 (68)
..++.|++-...+ ..|.+.+..|.|
T Consensus 36 ~~~vAFKVKtT~p--~~YrVrP~~G~I 60 (116)
T 1m1s_A 36 DSRLAFKVKSSNN--EHYRVRPVYGFV 60 (116)
T ss_dssp SSEEEEEEEESCT--TTEEEECSEEEE
T ss_pred CCeEEEEEEecCC--CceEEcCCceEE
Confidence 3467788765543 678888888754
No 50
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=38.54 E-value=40 Score=17.05 Aligned_cols=25 Identities=4% Similarity=0.220 Sum_probs=17.1
Q ss_pred CeEEEEEeccCCCCCCcEEEeCCccEE
Q psy8623 14 NAMVNYTLGESPSRTNHFYMKSVSGEI 40 (68)
Q Consensus 14 ~~~i~y~i~~~~~~~~~f~id~~tG~i 40 (68)
..+|.|++-...+ ..|.+.+.+|.|
T Consensus 38 ~~~vaFKVKTT~p--~~y~VrP~~Gii 62 (126)
T 1msp_A 38 GRRIGWAIKTTNM--RRLSVDPPCGVL 62 (126)
T ss_dssp SSCEEEEEEESCT--TTEEEESCEEEE
T ss_pred CCeEEEEEEcCCC--CcEEEECCCeEE
Confidence 3467788865544 568888888843
No 51
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=37.62 E-value=41 Score=16.90 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=16.4
Q ss_pred eEEEEEeccCCCCCCcEEEeCCccEE
Q psy8623 15 AMVNYTLGESPSRTNHFYMKSVSGEI 40 (68)
Q Consensus 15 ~~i~y~i~~~~~~~~~f~id~~tG~i 40 (68)
.+|.|++-...+ ..|.+.+..|.|
T Consensus 41 ~~vaFKVKTT~p--~~y~VrP~~G~i 64 (128)
T 1z9l_A 41 RKVCFKVKTTAP--RRYCVRPNSGVI 64 (128)
T ss_dssp SCEEEEEEESCG--GGEEEESCEEEE
T ss_pred CeEEEEEECCCC--CceEEeCCCcEE
Confidence 457777765544 678888888843
No 52
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=33.19 E-value=46 Score=16.44 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=21.1
Q ss_pred EEeCCccEE----EEeecCCCCCCceEEEEEEEEECCc
Q psy8623 32 YMKSVSGEI----CIAQDLDFESRSSYEFPVVATDRGK 65 (68)
Q Consensus 32 ~id~~tG~i----~~~~~ld~e~~~~~~~~v~a~d~g~ 65 (68)
..|..-|.| .+....|-.+...|.++..++|..+
T Consensus 35 A~D~~DGDlT~~I~V~g~Vdt~k~G~Y~VtY~VtDs~G 72 (103)
T 2kpn_A 35 AIDKEDGDLTSKIKVDGEVDTTKAGTYVLTYTVTDSKG 72 (103)
T ss_dssp EECSSSCBCGGGCEEESCCCSSSCEEEEEEEEEECTTS
T ss_pred EEcCCCCCcceeEEEeCcccCCCceEEEEEEEEEcCCC
Confidence 444444433 3445567777778888888887543
No 53
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.60 E-value=56 Score=16.93 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=16.4
Q ss_pred eEEEEEeccCCCCCCcEEEeCCccE
Q psy8623 15 AMVNYTLGESPSRTNHFYMKSVSGE 39 (68)
Q Consensus 15 ~~i~y~i~~~~~~~~~f~id~~tG~ 39 (68)
..|.|++-...+ ..|.+.+..|.
T Consensus 45 ~~VaFKVKTT~p--~~y~VrP~~Gi 67 (147)
T 2cri_A 45 RKVCFKVKTTAP--RRYCVRPNSGI 67 (147)
T ss_dssp SCEEEEEEESCT--TSEEEESSEEE
T ss_pred CcEEEEEECCCC--ccEEEcCCCcE
Confidence 467888865544 67888888874
No 54
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A
Probab=30.62 E-value=36 Score=19.34 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=12.6
Q ss_pred CcEEEeCCccEEEEe
Q psy8623 29 NHFYMKSVSGEICIA 43 (68)
Q Consensus 29 ~~f~id~~tG~i~~~ 43 (68)
..|.++|.||.+.+.
T Consensus 38 ~ifIfnP~TGqLflK 52 (222)
T 3enb_A 38 AIFIFNPRTGQLFLK 52 (222)
T ss_dssp EEEEECTTTCEEEEE
T ss_pred eEEEEeCCCCcEEEE
Confidence 468889999999875
No 55
>3nqz_A MCP-02, secreted metalloprotease MCP02; autoprocessed complex, the thermolysin family, hydro; 2.05A {Pseudoalteromonas SP} PDB: 3nqy_A
Probab=29.89 E-value=52 Score=17.68 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=18.0
Q ss_pred CeEEEEEecc---CC-CCCCcEEEeCCccEEEEe
Q psy8623 14 NAMVNYTLGE---SP-SRTNHFYMKSVSGEICIA 43 (68)
Q Consensus 14 ~~~i~y~i~~---~~-~~~~~f~id~~tG~i~~~ 43 (68)
..++.|.+.- +. +...++.||..||+|.-.
T Consensus 141 ~~~LaY~V~~~~~~~~p~~~~v~VDA~TG~vL~~ 174 (180)
T 3nqz_A 141 KAHLVYEVSYVTYGKSPSRPYLIIDANTGEVLLS 174 (180)
T ss_dssp CEEEEEEEEEEBCTTSCBCEEEEEETTTCCEEEE
T ss_pred CEEEEEEEEEEecCCCCcccEEEEECCCchhHhh
Confidence 4567776522 22 222456789999987544
No 56
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.32 E-value=50 Score=15.38 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=12.8
Q ss_pred CCCceEEEEEEEEECCc
Q psy8623 49 ESRSSYEFPVVATDRGK 65 (68)
Q Consensus 49 e~~~~~~~~v~a~d~g~ 65 (68)
+....|.|.|.|.+..+
T Consensus 69 ~p~t~Y~~~V~A~~~~~ 85 (104)
T 2dkm_A 69 EPGRDYEVSVQSLRGPE 85 (104)
T ss_dssp CTTCCEEEEEEEECSSS
T ss_pred CCCCEEEEEEEEECCCC
Confidence 35578999999987553
No 57
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=26.77 E-value=76 Score=16.61 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=17.2
Q ss_pred eEEEEEeccCCCCCCcEEEeCCccEE
Q psy8623 15 AMVNYTLGESPSRTNHFYMKSVSGEI 40 (68)
Q Consensus 15 ~~i~y~i~~~~~~~~~f~id~~tG~i 40 (68)
..|.|++-...+ ..|.+.+..|.|
T Consensus 49 ~~VaFKVKTT~p--~~y~VrP~~GiI 72 (152)
T 1wic_A 49 NIVAFKVRTTAP--EKYRVKPSNSSC 72 (152)
T ss_dssp SCEEEEEEESCT--TTEEEESSEEEE
T ss_pred CeEEEEEECCCC--CceeecCCCcEE
Confidence 467888865554 678899888854
No 58
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14
Probab=26.20 E-value=47 Score=19.27 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=12.7
Q ss_pred CcEEEeCCccEEEEe
Q psy8623 29 NHFYMKSVSGEICIA 43 (68)
Q Consensus 29 ~~f~id~~tG~i~~~ 43 (68)
..|.++|.||.+.+.
T Consensus 47 ~ifIfnP~TGqLflK 61 (257)
T 3e9l_A 47 AIFIFNPRTGQLFLK 61 (257)
T ss_dssp EEEEECTTTCEEEEE
T ss_pred eEEEEeCCCCcEEEE
Confidence 468889999999875
No 59
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=25.87 E-value=55 Score=14.71 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=13.1
Q ss_pred CCCceEEEEEEEEECCc
Q psy8623 49 ESRSSYEFPVVATDRGK 65 (68)
Q Consensus 49 e~~~~~~~~v~a~d~g~ 65 (68)
.....|.+.|.|...++
T Consensus 63 ~p~t~Y~~~V~A~~~~g 79 (94)
T 1j8k_A 63 RPGSEYTVSVVALHDDM 79 (94)
T ss_dssp CCCSEEEEEEEECSSSC
T ss_pred CCCCEEEEEEEEEcCCC
Confidence 45678999999987654
No 60
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=25.52 E-value=60 Score=15.06 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=14.7
Q ss_pred CCcEEEeCCccEEEEeecC
Q psy8623 28 TNHFYMKSVSGEICIAQDL 46 (68)
Q Consensus 28 ~~~f~id~~tG~i~~~~~l 46 (68)
...|..|+++++|.+.+.+
T Consensus 40 iKIykyde~tNeI~LkKE~ 58 (72)
T 3kvp_A 40 IKIYEYNESRNEVKLKKEY 58 (72)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEee
Confidence 3667889999999887653
No 61
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=25.51 E-value=50 Score=19.23 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=12.6
Q ss_pred CcEEEeCCccEEEEe
Q psy8623 29 NHFYMKSVSGEICIA 43 (68)
Q Consensus 29 ~~f~id~~tG~i~~~ 43 (68)
..|..+|.||.+.+.
T Consensus 46 ~ififnP~TGqLfLK 60 (260)
T 3sbt_A 46 CIFTLNPKTGHLFLK 60 (260)
T ss_dssp EEEEECTTTCEEEEE
T ss_pred eEEEEeCCCCcEEEE
Confidence 468889999999875
No 62
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=23.78 E-value=1.1e+02 Score=17.68 Aligned_cols=45 Identities=9% Similarity=-0.108 Sum_probs=28.1
Q ss_pred EEEEec--cCCCCCCcEEEeCCccEEEEeecCCCCCCceEEEEEEEEEC
Q psy8623 17 VNYTLG--ESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDR 63 (68)
Q Consensus 17 i~y~i~--~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~~~v~a~d~ 63 (68)
..|++. .+.....|+..|+.++.+.- -++ -.....|.+.|.|++.
T Consensus 33 ~~y~vt~a~g~~LPsWL~fd~~t~TfsG-~P~-~~D~G~~~i~VtA~~~ 79 (246)
T 1u2c_A 33 EIIKVSAAGKEALPSWLHWDPHSHILEG-LPL-DTDKGVHYISVSAARL 79 (246)
T ss_dssp EEEEEEETTSSSCCTTEEEETTTTEEEE-CCC-GGGCEEEEEEEEEEEE
T ss_pred cEEEEEecCCCCCCcceEEcCCCCeEEe-ccC-CCCcceEEEEEEEeec
Confidence 355553 34444589999999986422 222 2345678888888754
No 63
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=22.56 E-value=65 Score=16.33 Aligned_cols=27 Identities=7% Similarity=0.170 Sum_probs=13.6
Q ss_pred CeEEEEEeccCCCCCCcEEEeCCccEE
Q psy8623 14 NAMVNYTLGESPSRTNHFYMKSVSGEI 40 (68)
Q Consensus 14 ~~~i~y~i~~~~~~~~~f~id~~tG~i 40 (68)
|..+.|++.......-.=.+|..||++
T Consensus 55 n~~L~F~vdee~~~~vVkVvD~~TgEV 81 (117)
T 2hc5_A 55 QVHLKFELHDKLNEYYVKVIEDSTNEV 81 (117)
T ss_dssp SCCEEEEEEEETTEEEEEEEETTTTEE
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcE
Confidence 445666666554311112236677765
No 64
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1
Probab=21.43 E-value=68 Score=14.21 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.2
Q ss_pred CCCceEEEEEEEEECCc
Q psy8623 49 ESRSSYEFPVVATDRGK 65 (68)
Q Consensus 49 e~~~~~~~~v~a~d~g~ 65 (68)
+....|.+.|.|.|..+
T Consensus 59 ~~~t~Y~~~V~A~n~~G 75 (88)
T 1k85_A 59 AADTSYTFTVKAKDAAG 75 (88)
T ss_dssp CSSCEEEEEEEEEETTT
T ss_pred CCCCEEEEEEEEEeCCC
Confidence 34578999999998653
No 65
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=20.16 E-value=80 Score=14.47 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.6
Q ss_pred CCCCCceEEEEEEEEECCc
Q psy8623 47 DFESRSSYEFPVVATDRGK 65 (68)
Q Consensus 47 d~e~~~~~~~~v~a~d~g~ 65 (68)
-+.....|.+.+.++|..+
T Consensus 54 ty~~~G~Y~v~LtVtd~~G 72 (85)
T 2y72_A 54 AYKKAGTYNVTLKVTDDKG 72 (85)
T ss_dssp ECSSCEEEEEEEEEEETTS
T ss_pred EcCCCeEEEEEEEEEECCC
Confidence 3456688999999998754
No 66
>2fhz_B Colicin-E5; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.243.1.2 PDB: 2a8k_A 3ao9_A 2dfx_E 2djh_A* 3vj7_A*
Probab=20.08 E-value=83 Score=15.70 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=11.9
Q ss_pred CcEEEeCCccEEEEe
Q psy8623 29 NHFYMKSVSGEICIA 43 (68)
Q Consensus 29 ~~f~id~~tG~i~~~ 43 (68)
.|..++-.||+|...
T Consensus 72 ~YVVvndrtGeivQi 86 (108)
T 2fhz_B 72 KYVVVNDRTGEVTQI 86 (108)
T ss_dssp EEEEEETTTCBEEEE
T ss_pred CEEEEeCCCccEEEe
Confidence 688889999998543
Done!