RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8623
(68 letters)
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 73.3 bits (181), Expect = 4e-19
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNH-FYMKSVSGEICIAQDLDFESRSSYEFPVVA 60
L++ A+D D GVN + Y G + + SG + + +D E + F V+A
Sbjct: 34 LQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMA 93
Query: 61 TDRG 64
DRG
Sbjct: 94 RDRG 97
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 70.6 bits (174), Expect = 4e-18
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 LRVSASDPDCGVNAMVNYTLGE--SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVV 59
+++ A+D D G NA + Y G +P+ F + + +G I + + LD E + ++ V+
Sbjct: 34 IQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVL 93
Query: 60 ATDRG 64
A+D
Sbjct: 94 ASDGS 98
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 65.7 bits (161), Expect = 2e-15
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
V+A+DPD G V Y+ + F + S G + + Q+LD+E +Y+ V AT
Sbjct: 129 FIVNATDPDLGAGGSVLYSFQPP---SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNAT 185
Query: 62 DRGK 65
D+ K
Sbjct: 186 DQDK 189
Score = 58.4 bits (142), Expect = 1e-12
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
++ A D D N + + + + F ++ +G + + Q LD E++S + +
Sbjct: 30 TQLLARDMD---NDPLVFGV-SGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVS 85
Query: 62 DRGK 65
D
Sbjct: 86 DHQG 89
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on
PAIR of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 61.2 bits (149), Expect = 1e-14
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+V SD G + + + F + +G + + + LD E+ ++Y+ V T
Sbjct: 23 GKVVDSDRPEGSKFRLTGKGVDQDPK-GTFRINENTGSVSVTRTLDRETIATYQLYVETT 81
Query: 62 DRG 64
D
Sbjct: 82 DAS 84
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 63.8 bits (155), Expect = 2e-14
Identities = 15/63 (23%), Positives = 16/63 (25%), Gaps = 2/63 (3%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
V Y L E F S E+ LD E R YE V T
Sbjct: 159 QFRLLPVQFLCPQISVAYRLLEGEG--LPFRSAPDSLEVSTRWALDREQREKYELVAVCT 216
Query: 62 DRG 64
Sbjct: 217 VHA 219
Score = 39.9 bits (93), Expect = 9e-06
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 2 LRVSA--SDPDCGVNAMVNYTL----GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYE 55
L V A P+ + + L N ++ +G + + + LD S
Sbjct: 23 LYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLS 82
Query: 56 F 56
Sbjct: 83 V 83
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 60.1 bits (146), Expect = 3e-14
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
RV SD G + + + F + SGE+ + + LD E+ SY+ V T
Sbjct: 22 GRVVVSDRIPGSKIKLYGKGVDQEPK-GIFKINENSGEVSVTKALDREAIPSYQLQVETT 80
Query: 62 DRG 64
D
Sbjct: 81 DEN 83
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 63.1 bits (154), Expect = 6e-14
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+ A DPD N + F + SG + F+ Y V A
Sbjct: 133 FTLQARDPDTDHNIHYFIVRDRT---GGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAE 189
Query: 62 DRG 64
D+
Sbjct: 190 DQN 192
Score = 57.7 bits (140), Expect = 5e-12
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-RSSYEFPVVA 60
LRV A D D G NA + Y + + HF + S +G I + LD ++ + YEF V A
Sbjct: 345 LRVKAMDSDSGSNAEIEYLVSDD-----HFAVDS-NGIIVNNKQLDADNNNAYYEFIVTA 398
Query: 61 TDRG 64
D+G
Sbjct: 399 KDKG 402
Score = 49.2 bits (118), Expect = 5e-09
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSS---YEFPV 58
+ + A + + YTL F + SG + +A++LDFE Y V
Sbjct: 239 ISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 295
Query: 59 VATDRG 64
AT+
Sbjct: 296 TATEDS 301
Score = 44.6 bits (106), Expect = 2e-07
Identities = 7/76 (9%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 3 RVSASDPDCGVNAMVNYTLGESPSR-------TNHFYMKSVSGEICIAQDLDFESRSS-- 53
R+ ++ D + L + + N + +G + + + D+E
Sbjct: 13 RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEK 72
Query: 54 ----YEFPVVATDRGK 65
+
Sbjct: 73 TIDFWVIITNMGHNAG 88
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 59.2 bits (144), Expect = 1e-13
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
+ N + Y++ G T F + +SG++ + + LD E + +
Sbjct: 21 QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 80
Query: 59 VATDRG 64
A D
Sbjct: 81 HAVDIN 86
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 57.0 bits (138), Expect = 5e-13
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVA 60
+ SD D G + + Y L F + +G+I Q LD E RS Y A
Sbjct: 21 YVGKLHSDMDRG-DGSIKYIL-SGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQA 78
Query: 61 TDRG 64
DR
Sbjct: 79 LDRR 82
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 60.0 bits (146), Expect = 7e-13
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYEFP 57
RV A+D D G NA +Y + T F + ++ G I + + LDFE++ SY
Sbjct: 235 GRVKANDQDIGENAQSSYDI-IDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLK 293
Query: 58 VVATDRGKETQ 68
V A + + +
Sbjct: 294 VEAANIHIDPR 304
Score = 56.1 bits (136), Expect = 2e-11
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+ +D D G + + Y L F + ++G+I + LD E ++ Y A
Sbjct: 21 VGRLHTDLDPG-SKKIKYIL-SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAV 78
Query: 62 DRG 64
D
Sbjct: 79 DFE 81
Score = 51.5 bits (124), Expect = 8e-10
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 2 LRVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQ-DLDFESRSSYEFP 57
V+A+D D G +A + Y++ +F ++ + I A ++D E++ Y
Sbjct: 126 TNVTATDADDPVYGNSAKLVYSI---LEGQPYFSIEPETAIIKTALPNMDREAKEEYLVV 182
Query: 58 VVATDRGKET 67
+ A D G +
Sbjct: 183 IQAKDMGGHS 192
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 57.0 bits (138), Expect = 7e-13
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+V S+ G ++ + + F + +SG++ + + LD E+ ++YE V T
Sbjct: 22 GKVIRSEGTEGAKFRLSGKGVDQDPK-GIFRINEISGDVSVTRPLDREAIANYELEVEVT 80
Query: 62 DRG 64
D
Sbjct: 81 DLS 83
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 58.9 bits (143), Expect = 1e-12
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
+ D N + Y++ G T F + +SG++ + + LD E + +
Sbjct: 19 QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 78
Query: 59 VATDRG 64
A D
Sbjct: 79 HAVDIN 84
Score = 54.7 bits (132), Expect = 3e-11
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 2 LRVSASDPD--CGVNAMVNYTL---GESPSRTNHFYMKSVSGEIC-IAQDLDFESRSSYE 55
+ V+A D D +N M+ Y + S N F + + +G+I +A LD E Y
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 56 FPVVATDRG 64
+ ATD
Sbjct: 188 LIIQATDME 196
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 59.7 bits (145), Expect = 1e-12
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES----RSSYEFP 57
++A DPD + + YT P+ N + V+G+I LD ES + Y
Sbjct: 358 TTLTAQDPDRYMQQNIRYTKLSDPA--NWLKIDPVNGQITTIAVLDRESPNVKNNIYNAT 415
Query: 58 VVATDRG 64
+A+D G
Sbjct: 416 FLASDNG 422
Score = 57.4 bits (139), Expect = 7e-12
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
+ D N + Y++ G T F + +SG++ + + LD E + +
Sbjct: 19 QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 78
Query: 59 VATDRGKE 66
A D
Sbjct: 79 HAVDINGN 86
Score = 57.4 bits (139), Expect = 7e-12
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 2 LRVSASDPD--CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEI-CIAQDLDFESRSSYE 55
+ V+A D D +N M+ Y + S N F + + +G+I +A LD E Y
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 56 FPVVATDRG 64
+ ATD
Sbjct: 188 LIIQATDME 196
Score = 46.9 bits (112), Expect = 3e-08
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 2 LRVSASDPDCGVNAM--VNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYE 55
++ +D D Y + F + S G + + + +DFE+ +
Sbjct: 242 ANLTVTDKDQPHTPAWNAAYRISGGDPT-GRFAILTDPNSNDGLVTVVKPIDFETNRMFV 300
Query: 56 FPVVATDRG 64
V A ++
Sbjct: 301 LTVAAENQV 309
Score = 45.0 bits (107), Expect = 1e-07
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 2 LRVSASDPDCGVNAM-VNYTL-GESPSRTNHFYMKSVSGEIC-IAQDLDFESRSSYEFPV 58
+ ++A D D NA + L + ++ + ++G+ + + F YE P+
Sbjct: 462 INITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPI 521
Query: 59 VATDRG 64
+ TD G
Sbjct: 522 IITDSG 527
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 58.5 bits (142), Expect = 1e-12
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 LRVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQ-DLDFESRSSYEFP 57
++V+A+D D G +A V Y++ + +F ++S +G I A ++D E+R Y+
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQG---QPYFSVESETGIIKTALLNMDRENREQYQVV 182
Query: 58 VVATDRG 64
+ A D G
Sbjct: 183 IQAKDMG 189
Score = 51.9 bits (125), Expect = 3e-10
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+ SD D G + + Y L + F + +G+I + LD E + Y A
Sbjct: 21 VGKLHSDQDRG-DGSLKYIL-SGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAV 78
Query: 62 DRG 64
+R
Sbjct: 79 NRR 81
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 58.1 bits (141), Expect = 1e-12
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 2 LRVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
+V+A D D +A V Y + + +F + DLD ES+S+YE V
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQIIKG---NEYFTVDDSGVIFTARADLDRESQSAYEIIV 180
Query: 59 VATDRG 64
A D
Sbjct: 181 KAKDAL 186
Score = 45.8 bits (109), Expect = 7e-08
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
++++S N Y + E S F ++ G+I + LD E ++ YE
Sbjct: 22 GKLTSSVG----NKNAMYII-EGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHII 76
Query: 62 DRG 64
DR
Sbjct: 77 DRR 79
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A
3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 58.1 bits (141), Expect = 1e-12
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
+ + V Y++ G F ++ +G + + Q LD E+ + Y
Sbjct: 19 KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYS 78
Query: 59 VATDRG 64
A
Sbjct: 79 HAVSSN 84
Score = 57.0 bits (138), Expect = 5e-12
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 2 LRVSASDPDCGV---NAMVNYTLGE---SPSRTNHFYMKSVSGEICIA-QDLDFESRSSY 54
++VSA+D D V NA + YT+ N F + +G I + LD ES +Y
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTY 187
Query: 55 EFPVVATDRG 64
V A D
Sbjct: 188 TLVVQAADLQ 197
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 59.1 bits (143), Expect = 2e-12
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFP 57
+ + A DPD ++Y +G P+ + +G + +LD ES ++Y
Sbjct: 507 ISLVAQDPDKQQIQKLSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVI 564
Query: 58 VVATDRG 64
++ TD G
Sbjct: 565 MLVTDDG 571
Score = 56.4 bits (136), Expect = 1e-11
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 2 LRVSASDPD---CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEICIA-QDLDFESRSSY 54
+ VSA+D D +N +++Y++ + N F + +G I + LD E Y
Sbjct: 283 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEY 342
Query: 55 EFPVVATDRG 64
V ATD
Sbjct: 343 TLTVQATDLE 352
Score = 53.0 bits (127), Expect = 3e-10
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
R+ + V Y++ G F ++ +G + + + LD E Y
Sbjct: 174 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 233
Query: 59 VATDRGKE 66
A
Sbjct: 234 HAVSENGS 241
Score = 46.4 bits (110), Expect = 5e-08
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 4 VSASDPDCGVNAM-VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATD 62
++ SD D N +L G + + Y V+ +D
Sbjct: 612 LTISDADIPPNTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 670
Query: 63 RG 64
Sbjct: 671 AQ 672
Score = 42.9 bits (101), Expect = 1e-06
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYEFP 57
R+S +D D + F + +S G + A+ LDFE R Y
Sbjct: 395 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQ 454
Query: 58 VVATD 62
+ +
Sbjct: 455 ITVEN 459
Score = 31.0 bits (70), Expect = 0.017
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+V+ SD + Y +G+ + F + G + + + + + +
Sbjct: 58 GKVNFSDCTTRKH--GLYDVGD-----SRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDA 109
Query: 62 DRGKET 67
K +
Sbjct: 110 RGIKHS 115
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 58.9 bits (143), Expect = 2e-12
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFP 57
+ + A DPD ++Y +G P+ + +G + +LD ES ++Y
Sbjct: 358 ISLVAQDPDKQQIQKLSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVI 415
Query: 58 VVATDRG 64
++ TD G
Sbjct: 416 MLVTDDG 422
Score = 55.4 bits (134), Expect = 4e-11
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 2 LRVSASDPD---CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEICIA-QDLDFESRSSY 54
+ VSA+D D +N +++Y++ + N F + +G I + LD E Y
Sbjct: 134 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEY 193
Query: 55 EFPVVATDRG 64
V ATD
Sbjct: 194 TLTVQATDLE 203
Score = 50.8 bits (122), Expect = 1e-09
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
R+ + V Y++ G F ++ +G + + + LD E Y
Sbjct: 25 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 84
Query: 59 VATDRGKE 66
A
Sbjct: 85 HAVSENGS 92
Score = 49.2 bits (118), Expect = 5e-09
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 4 VSASDPDCGVNAMV-NYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATD 62
++ SD D N +L G + + Y V+ +D
Sbjct: 463 LTISDADIPPNTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 521
Query: 63 RG 64
Sbjct: 522 AQ 523
Score = 41.5 bits (98), Expect = 3e-06
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYEFP 57
R+S +D D + F + +S G + A+ LDFE R Y
Sbjct: 246 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQ 305
Query: 58 VVATD 62
+ +
Sbjct: 306 ITVEN 310
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 57.7 bits (140), Expect = 3e-12
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 2 LRVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQ-DLDFESRSSYEFP 57
++V+ASD D G +A + Y++ E +F +++ +G I A ++D E++ Y
Sbjct: 127 IQVTASDADDPTYGNSAKLVYSILEG---QPYFSVEAQTGIIRTALPNMDREAKEEYHVV 183
Query: 58 VVATDRGKET 67
+ A D G
Sbjct: 184 IQAKDMGGHM 193
Score = 53.8 bits (130), Expect = 8e-11
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+ SD D G + + Y L F + SG I + LD E R+ Y A
Sbjct: 22 VGRLHSDIDSG-DGNIKYIL-SGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV 79
Query: 62 DRG 64
DR
Sbjct: 80 DRD 82
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 58.2 bits (141), Expect = 3e-12
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSS---YEFPV 58
+ + A + + YTL F + SG + +A++LDFE Y V
Sbjct: 234 ISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 290
Query: 59 VATDRG 64
AT+
Sbjct: 291 TATEDS 296
Score = 58.2 bits (141), Expect = 4e-12
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+ A DPD N + F + SG + F+ Y V A
Sbjct: 128 FTLQARDPDTDHNIHYFIVRDRTG---GRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAE 184
Query: 62 DRG 64
D+
Sbjct: 185 DQN 187
Score = 48.5 bits (116), Expect = 8e-09
Identities = 7/76 (9%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSR-------TNHFYMKSVSGEICIAQDLDFESRSS- 53
R+ ++ D + L + + N + +G + + + D+E
Sbjct: 7 KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPE 66
Query: 54 -----YEFPVVATDRG 64
+
Sbjct: 67 KTIDFWVIITNMGHNA 82
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 57.4 bits (139), Expect = 3e-12
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVAT 61
+V SD G + + + F + +G + + + LD E+ ++Y+ V T
Sbjct: 23 GKVVDSDRPEGSKFRLTGKGVDQDPK-GTFRINENTGSVSVTRTLDRETIATYQLYVETT 81
Query: 62 DRG 64
D
Sbjct: 82 DAS 84
Score = 48.2 bits (115), Expect = 9e-09
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 2 LRVSASDPDC--GVNAMVNYTLGE---SPSRTNHFYMKSVSGEICIAQ---DLDFESR-- 51
+R++A D D NA++ Y + + N FY+ G+I LD E+
Sbjct: 128 MRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLEN 187
Query: 52 SSYEFPVVATDRG 64
YE + A D
Sbjct: 188 PKYELIIEAQDMA 200
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 57.0 bits (138), Expect = 9e-12
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 2 LRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-----RSSYEF 56
+A +PD ++ + Y + + N + +G I ++D E S+Y
Sbjct: 352 TSYTAREPDTFMDQKITYRIWRDTA--NWLEINPETGAIFTRAEMDREDAEHVKNSTYVA 409
Query: 57 PVVATDRG 64
++ATD G
Sbjct: 410 LIIATDDG 417
Score = 55.8 bits (135), Expect = 3e-11
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 2 LRVSASDPDCGV---NAMVNYTLGE---SPSRTNHFYMKSVSGEICIAQ-DLDFESRSSY 54
++VSA+D D V NA + YT+ N F + +G I + LD ES +Y
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTY 187
Query: 55 EFPVVATDRG 64
V A D
Sbjct: 188 TLVVQAADLQ 197
Score = 54.3 bits (131), Expect = 8e-11
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
+ + V Y++ G F ++ +G + + Q LD E+ + Y
Sbjct: 19 KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYS 78
Query: 59 VATDRGKE 66
A E
Sbjct: 79 HAVSSNGE 86
Score = 50.8 bits (122), Expect = 1e-09
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 4 VSASDPDCGVNAM-VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATD 62
++ DPD N L S + E I Q Y+ + D
Sbjct: 458 ITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLAD 517
Query: 63 RG 64
Sbjct: 518 NQ 519
Score = 48.1 bits (115), Expect = 1e-08
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 2 LRVSASDPDCGVNAM--VNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYE 55
+ +D D YT+ P F + + G + A+ LDFE++ Y
Sbjct: 240 ATLKVTDDDAPNTPAWKAVYTVVNDPD--QQFVVVTDPTTNDGILKTAKGLDFEAKQQYI 297
Query: 56 FPVVATDRG 64
V +
Sbjct: 298 LHVRVENEE 306
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 123
Score = 54.3 bits (131), Expect = 1e-11
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 6 ASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATD 62
SD + Y G + F +GE+ + LD E + A D
Sbjct: 35 HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALD 94
Query: 63 RG 64
Sbjct: 95 AR 96
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus}
PDB: 2a4c_A
Length = 98
Score = 53.2 bits (128), Expect = 2e-11
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 1 MLRVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVA 60
++ +D D G + + Y L F + ++G+I + LD E ++ Y A
Sbjct: 20 LVGRLHTDLDPG-SKKIKYIL-SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQA 77
Query: 61 TDRG 64
D
Sbjct: 78 VDFE 81
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein,
IG-like domain, adhesi protein, cell invasion-cell
adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1
PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A
3ff7_A 2omw_B
Length = 105
Score = 51.6 bits (124), Expect = 8e-11
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 2 LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
+ + V Y++ G F ++ +G + + + LD E ++Y
Sbjct: 23 KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFS 82
Query: 59 VATDRG 64
A
Sbjct: 83 HAVSSN 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 0.60
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 2 LRVSASD--PDCGVNAMV 17
L++ A D P + A +
Sbjct: 29 LKLYADDSAPALAIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.372
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 953,940
Number of extensions: 39722
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 58
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)