RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8623
         (68 letters)



>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 104

 Score = 43.6 bits (102), Expect = 6e-08
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 2  LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
            +     +      V Y++   G        F ++  +G + + + LD E  ++Y    
Sbjct: 22 KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFS 81

Query: 59 VATDRG 64
           A    
Sbjct: 82 HAVSSN 87


>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
          frog (Xenopus laevis) [TaxId: 8355]}
          Length = 100

 Score = 42.8 bits (100), Expect = 8e-08
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 2  LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
           R+     +      V Y++   G        F ++  +G + + + LD E    Y    
Sbjct: 19 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 78

Query: 59 VATDRG 64
           A    
Sbjct: 79 HAVSEN 84


>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 102

 Score = 41.4 bits (96), Expect = 4e-07
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 2  LRVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPV 58
            +         N  + Y++   G     T  F +  +SG++ + + LD E  + +    
Sbjct: 21 QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 80

Query: 59 VATDRG 64
           A D  
Sbjct: 81 HAVDIN 86


>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
          frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 29.6 bits (65), Expect = 0.015
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 2  LRVSASDPDCGVNAMVNYTLGESPSRTNHF----YMKSVSGEICIAQDLDFESRSSYEFP 57
           R+S +D D               +    F      +S  G +  A+ LDFE R  Y   
Sbjct: 27 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQ 86

Query: 58 VVATDRG 64
          +   +  
Sbjct: 87 ITVENAE 93


>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
          frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 26.6 bits (57), Expect = 0.16
 Identities = 9/24 (37%), Positives = 9/24 (37%)

Query: 41 CIAQDLDFESRSSYEFPVVATDRG 64
           I   LD E    Y   V ATD  
Sbjct: 74 LIGTGLDREKFPEYTLTVQATDLE 97


>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 114

 Score = 23.1 bits (48), Expect = 3.3
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 48 FESRSSYEFPVVATDRG 64
           E    Y   + ATD  
Sbjct: 79 REKVQQYTLIIQATDME 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 229,947
Number of extensions: 7596
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 7
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)