BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8628
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 101 bits (251), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 6 RYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTPE 64
RYGHWHKD+ Q K+ PRLI+F++GG+S+SE+R AYEVT K NWEVI+GS+HI+TPE
Sbjct: 520 RYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPE 579
Query: 65 DFLNNLSNLS 74
L +L +S
Sbjct: 580 GLLRDLRKIS 589
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 100 bits (249), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 6 RYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTPE 64
RYGHWHKD+ Q K+ PRLI+F++GG+S+SE R AYEVT K NWEVI+GS+HI+TPE
Sbjct: 520 RYGHWHKDKGQASYKSGPRLIIFVVGGISYSEXRSAYEVTQTAKNNWEVILGSTHILTPE 579
Query: 65 DFLNNLSNLS 74
L +L +S
Sbjct: 580 GLLRDLRKIS 589
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 98.6 bits (244), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 577 KLLDTLKKLN 586
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 98.6 bits (244), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 529 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 588
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 589 KLLDTLKKLN 598
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 44/55 (80%)
Query: 20 KNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
KN RLI+F+IGG+++SE+RCAYEV+ K+ EVIIGS+HI+TP L+++ L+
Sbjct: 527 KNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLN 581
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73
P+L VFI G VS++EIRCAYEV+ + +EV IG+ +I TP +F+ +S L
Sbjct: 566 PKLFVFINGTVSYNEIRCAYEVSQS-SGYEVYIGAHNIATPAEFVELVSLL 615
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 4 IARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNW---------EVI 54
I R H K + Q K+ +VF++GG ++ E + N++ W +V
Sbjct: 594 ITRGSHTRKPKRQSYNKS----LVFVVGGGNYLEYQ-------NLQEWAHSQLHNPKKVX 642
Query: 55 IGSSHIMTPEDFLNNLSNL 73
GS+ I TP +FLN +S L
Sbjct: 643 YGSTAITTPAEFLNEISRL 661
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,360,868
Number of Sequences: 62578
Number of extensions: 75775
Number of successful extensions: 185
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 8
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)