BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8628
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q07327|ROP_DROME Protein ROP OS=Drosophila melanogaster GN=Rop PE=2 SV=2
Length = 597
Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats.
Identities = 53/70 (75%), Positives = 64/70 (91%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHKD+ Q QVKNVPRLIVFI+GGVS SE+RCAYEVTN V+NWEV++GSSHI++PE
Sbjct: 525 ARYGHWHKDKGQAQVKNVPRLIVFIVGGVSMSEMRCAYEVTNAVRNWEVLVGSSHILSPE 584
Query: 65 DFLNNLSNLS 74
FL++L +LS
Sbjct: 585 IFLSDLGSLS 594
>sp|P61765|STXB1_RAT Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1
Length = 594
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 577 KLLDTLKKLN 586
>sp|Q5R6D2|STXB1_PONAB Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1
Length = 594
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 577 KLLDTLKKLN 586
>sp|O08599|STXB1_MOUSE Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2
Length = 594
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 577 KLLDTLKKLN 586
>sp|P61764|STXB1_HUMAN Syntaxin-binding protein 1 OS=Homo sapiens GN=STXBP1 PE=1 SV=1
Length = 594
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 577 KLLDTLKKLN 586
>sp|Q6R748|STXB1_CHICK Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1
Length = 594
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 577 KLLDTLKKLN 586
>sp|P61763|STXB1_BOVIN Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1 PE=1 SV=1
Length = 594
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 55/70 (78%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
ARYGHWHK++A + ++ PRLI+FI+GGVS +E+RCAYEVT WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576
Query: 65 DFLNNLSNLS 74
L+ L L+
Sbjct: 577 KLLDTLKKLN 586
>sp|P34815|UNC18_CAEEL Putative acetylcholine regulator unc-18 OS=Caenorhabditis elegans
GN=unc-18 PE=2 SV=3
Length = 673
Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 5 ARYGHWHKDRAQQ-QVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTP 63
ARYG WHK+R QQ ++ PRLI++IIGGV+FSE+R YEVT K WEV+IGS I+TP
Sbjct: 598 ARYGQWHKERGQQSNYRSGPRLIIYIIGGVTFSEMRACYEVTAARKPWEVVIGSDRIITP 657
Query: 64 EDFLNNLSNLS 74
+ FL NL +L+
Sbjct: 658 DKFLTNLRDLN 668
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1
Length = 593
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTP 63
AR+GHWHK++A + + PRLIV+I+GGV+ SE+R AYEVT + WEV+IGSSHI+TP
Sbjct: 514 ARFGHWHKNKAGVEARAGPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTP 573
Query: 64 EDFLNNLSNL 73
FL++L L
Sbjct: 574 TRFLDDLKTL 583
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1
Length = 593
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTP 63
AR+GHWHK++A +++ PRLI++++GGV+ SE+R AYEVT WEV+IGSSHI+TP
Sbjct: 514 ARFGHWHKNKAGVEMRAGPRLIIYVMGGVAMSEMRAAYEVTRATDGKWEVLIGSSHILTP 573
Query: 64 EDFLNNLSNL 73
FL++L L
Sbjct: 574 TRFLDDLKTL 583
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2
Length = 593
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 5 ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTP 63
AR+GHWHK++A + + PRLIV+++GGV+ SE+R AYEVT + WEV+IGSSHI+TP
Sbjct: 514 ARFGHWHKNKAGIEARAGPRLIVYVMGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTP 573
Query: 64 EDFLNNLSNL 73
FL++L L
Sbjct: 574 TRFLDDLKAL 583
>sp|Q62753|STXB2_RAT Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1
Length = 594
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 6 RYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTPE 64
R+GHWHK++A + + PRLIV+I+GGV+ SE+R AYEVT + WEV+IGSSHI+TP
Sbjct: 516 RFGHWHKNKAGIEARAGPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPT 575
Query: 65 DFLNNLSNL 73
FL++L L
Sbjct: 576 RFLDDLRTL 584
>sp|Q60770|STXB3_MOUSE Syntaxin-binding protein 3 OS=Mus musculus GN=Stxbp3 PE=1 SV=1
Length = 592
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 44/55 (80%)
Query: 20 KNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
KN RLI+F+IGG+++SE+RCAYEV+ K+ EVIIGS+HI+TP L+++ L+
Sbjct: 527 KNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLN 581
>sp|O00186|STXB3_HUMAN Syntaxin-binding protein 3 OS=Homo sapiens GN=STXBP3 PE=1 SV=2
Length = 592
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 20 KNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
KN +LIVF+IGG+++SE+RCAYEV+ K+ EVIIGS+H++TP+ L+++ L+
Sbjct: 526 KNGSKLIVFVIGGITYSEVRCAYEVSQAHKSCEVIIGSTHVLTPKKLLDDIKMLN 580
>sp|P30619|SEC1_YEAST Protein transport protein SEC1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC1 PE=1 SV=1
Length = 724
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 20 KNVPR--LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73
KN+PR ++IGG+S EI+ AY+ +N+KN ++ IGS I+TP FL+ + L
Sbjct: 585 KNIPRQRFFYYVIGGISIPEIKAAYD-QSNLKNRDIFIGSDEILTPTKFLDEVERL 639
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1
PE=3 SV=1
Length = 598
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73
+LI+F+IGG++FSE+R YE++++ K + IGS++I+ P+ +++ L L
Sbjct: 547 KLIIFVIGGMTFSEMRSIYELSSHYKK-NIYIGSTNILLPKKYIDQLLTL 595
>sp|O94590|SEC1_SCHPO Protein transport protein sec1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec1 PE=3 SV=1
Length = 693
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 14 RAQQQVKNVPR--LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71
R++ +PR ++VF+ GG +FSE+R YE+++ N ++ IGS+ +P ++L+ S
Sbjct: 531 RSRSMASKLPREKMLVFVAGGTTFSELRTCYELSDKY-NKDIYIGSTVCYSPNEWLDFFS 589
Query: 72 NL 73
Sbjct: 590 KF 591
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3
Length = 662
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
R+ VFI+GG + SE+R +++T + EVI+GSS + P FL + L+
Sbjct: 601 RIFVFIVGGATRSELRVCHKLTEKLDR-EVILGSSSFLDPLTFLTKMKQLN 650
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica
GN=Os06g0135900 PE=2 SV=1
Length = 659
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
R+ VF+IGG + SE+R +++T +K E+++GSS I P F++ L L+
Sbjct: 603 RIFVFMIGGATRSELRTVHKLTMKLKR-EIVLGSSSIDDPPQFISKLKMLT 652
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica
GN=Os04g0252400 PE=3 SV=2
Length = 665
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
RL VF+IGG + SE+ A+++++ +K E+I+GSS + P F+ L LS
Sbjct: 605 RLFVFVIGGATRSELCAAHKLSSKLKR-EIILGSSSLDDPPQFITKLKMLS 654
>sp|P38932|VPS45_YEAST Vacuolar protein sorting-associated protein 45 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS45 PE=1
SV=2
Length = 577
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 11 HKDRAQQQVKNVPR-LIVFIIGGVSFSEIRCAYEVTNNVKN-WEVIIGSSHIMTPEDFLN 68
H+ QQ K++P+ +I+F+IGGV++ E R ++ + N V++G + I++ +++++
Sbjct: 512 HRVIGNQQSKDIPQDVILFVIGGVTYEEARLVHDFNGTMNNRMRVVLGGTSILSTKEYMD 571
Query: 69 NL 70
++
Sbjct: 572 SI 573
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3
Length = 673
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
R+ VFIIGG + SE+R +++T++++ EV++GS+ P ++ L LS
Sbjct: 607 RIFVFIIGGATRSELRVCHKLTSSLRR-EVVLGSTSFDDPPQYITKLKLLS 656
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1
SV=2
Length = 666
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
R+ VFI+GG + SE++ ++++ +K EVI+GS+ + P F+ L L+
Sbjct: 605 RIFVFIVGGATRSELKVCHKLSTKLKR-EVILGSTSLDDPPQFITKLKLLT 654
>sp|P22213|SLY1_YEAST Protein SLY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLY1 PE=1 SV=1
Length = 666
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 20/79 (25%)
Query: 4 IARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNW---------EVI 54
I R H K + Q K+ +VF++GG ++ E + N++ W +V+
Sbjct: 589 ITRGSHTRKPKRQSYNKS----LVFVVGGGNYLEYQ-------NLQEWAHSQLHNPKKVM 637
Query: 55 IGSSHIMTPEDFLNNLSNL 73
GS+ I TP +FLN +S L
Sbjct: 638 YGSTAITTPAEFLNEISRL 656
>sp|Q54IJ1|SCFD1_DICDI Sec1 family domain-containing protein 1 homolog OS=Dictyostelium
discoideum GN=scfd1 PE=3 SV=2
Length = 673
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 13 DRAQQQVKNVPR-------LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPED 65
D Q NVP+ IVF +GG ++ E + + + N ++I GS+ ++T ++
Sbjct: 604 DPKIQNKSNVPKRTTPFKEAIVFTVGGGNYVEYQNLQDFSKK-HNKKIIYGSNELLTSKE 662
Query: 66 FLNNLSNLS 74
FLN + NL+
Sbjct: 663 FLNQIKNLN 671
>sp|Q54GE3|VPS45_DICDI Vacuolar protein sorting-associated protein 45 OS=Dictyostelium
discoideum GN=vps45 PE=1 SV=1
Length = 563
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 18 QVKNVPR-LIVFIIGGVSFSEIRCAYEVTN-NVKNWEVIIGSSHIMTPEDFLNNLSNLSV 75
Q + P+ +I+F++GG+++ E Y + N V++G + I+ E FL +LS+ +
Sbjct: 494 QSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQI 553
>sp|Q851W1|SLY1_ORYSJ SEC1 family transport protein SLY1 OS=Oryza sativa subsp. japonica
GN=SLY1 PE=2 SV=1
Length = 623
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 26 IVFIIGGVSFSEIRCAYEVTNNVKNW-EVIIGSSHIMTPEDFLNNLSNL 73
IVF+IGG ++ E R E+T + +VI G++ I+ +F+ LS L
Sbjct: 559 IVFMIGGGNYIEYRSLTELTQRSQTTKQVIYGATEILNGVEFIQQLSEL 607
>sp|Q8WU76|SCFD2_HUMAN Sec1 family domain-containing protein 2 OS=Homo sapiens GN=SCFD2
PE=1 SV=2
Length = 684
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTP 63
+ P LI+F++GGV+ SE++ ++ ++K +VI+ S+ ++ P
Sbjct: 622 DYPLLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLLKP 665
>sp|P97390|VPS45_MOUSE Vacuolar protein sorting-associated protein 45 OS=Mus musculus
GN=Vps45 PE=1 SV=1
Length = 570
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 12 KDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70
+DR Q +IVFIIGG ++ E Y + +++G + I + FL +
Sbjct: 496 RDRPQD-------IIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEV 547
>sp|P34260|VP33A_CAEEL Vacuolar protein sorting-associated protein 33A OS=Caenorhabditis
elegans GN=vps-33.1 PE=1 SV=4
Length = 603
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 27 VFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73
VF+IGG++ SE+ E NV +I +S ++T + LNN++N+
Sbjct: 561 VFVIGGLTRSELAIIRENLPNV----ALITTSALITGDKLLNNITNI 603
>sp|O08700|VPS45_RAT Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus
GN=Vps45 PE=2 SV=1
Length = 570
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 12 KDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70
+DR Q +IVF+IGG ++ E Y + +++G + I + FL +
Sbjct: 496 RDRPQD-------IIVFVIGGATYEEALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEV 547
>sp|Q9NRW7|VPS45_HUMAN Vacuolar protein sorting-associated protein 45 OS=Homo sapiens
GN=VPS45 PE=1 SV=1
Length = 570
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 12 KDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70
+DR Q +IVF+IGG ++ E Y + +++G + + + FL +
Sbjct: 496 RDRPQD-------IIVFVIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEV 547
>sp|Q5F477|CB043_CHICK UPF0554 protein C2orf43 homolog OS=Gallus gallus GN=RCJMB04_2g19
PE=2 SV=2
Length = 324
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 3 HIARYGHWHKDRAQQQVKNVPRLIVFIIGG 32
H+ + G W KD ++ + KN+PRL+ II G
Sbjct: 24 HVLKCGPW-KDLSKDESKNLPRLLFMIIPG 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,822,348
Number of Sequences: 539616
Number of extensions: 923717
Number of successful extensions: 1844
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1809
Number of HSP's gapped (non-prelim): 33
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)