Query psy8628
Match_columns 75
No_of_seqs 132 out of 686
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 23:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300|consensus 99.8 3E-20 6.6E-25 145.4 7.6 68 3-71 514-582 (593)
2 PF00995 Sec1: Sec1 family; I 99.7 1.3E-16 2.8E-21 120.8 6.1 52 19-70 512-564 (564)
3 COG5158 SEC1 Proteins involved 99.5 2.5E-14 5.5E-19 112.5 6.8 63 9-73 515-577 (582)
4 KOG1299|consensus 99.4 1.9E-13 4.2E-18 105.9 6.7 56 18-73 493-548 (549)
5 KOG1301|consensus 99.2 8.8E-12 1.9E-16 97.8 5.2 57 18-74 558-615 (621)
6 KOG1302|consensus 99.0 7E-10 1.5E-14 87.8 6.7 49 21-70 551-599 (600)
7 PRK05581 ribulose-phosphate 3- 88.0 0.94 2E-05 30.6 3.9 42 25-71 171-212 (220)
8 PRK08883 ribulose-phosphate 3- 83.7 1.9 4.2E-05 30.3 3.8 43 23-70 166-208 (220)
9 KOG0148|consensus 83.1 2.1 4.6E-05 32.2 4.0 53 3-70 132-184 (321)
10 PLN02334 ribulose-phosphate 3- 82.9 1.6 3.5E-05 30.3 3.2 41 25-70 175-215 (229)
11 cd00564 TMP_TenI Thiamine mono 82.9 2 4.4E-05 27.8 3.5 43 24-71 150-192 (196)
12 TIGR01163 rpe ribulose-phospha 79.6 3.8 8.2E-05 27.3 4.0 44 25-73 166-209 (210)
13 PRK00043 thiE thiamine-phospha 78.8 2.8 6.1E-05 28.0 3.2 38 24-66 160-197 (212)
14 PRK10039 hypothetical protein; 77.7 7.2 0.00016 25.9 4.7 50 22-71 68-125 (127)
15 cd00429 RPE Ribulose-5-phospha 77.6 5.1 0.00011 26.6 4.1 43 25-72 167-209 (211)
16 PF12327 FtsZ_C: FtsZ family, 76.7 9 0.0002 23.5 4.8 38 21-58 35-76 (95)
17 cd04726 KGPDC_HPS 3-Keto-L-gul 76.0 6 0.00013 26.3 4.1 45 23-72 157-201 (202)
18 TIGR03128 RuMP_HxlA 3-hexulose 75.4 4.5 9.7E-05 27.2 3.4 43 24-71 158-203 (206)
19 TIGR00693 thiE thiamine-phosph 74.1 6 0.00013 26.3 3.8 42 25-71 153-194 (196)
20 PRK08745 ribulose-phosphate 3- 73.8 6.2 0.00013 28.0 3.9 42 22-68 169-210 (223)
21 PTZ00170 D-ribulose-5-phosphat 72.6 4.7 0.0001 28.3 3.1 42 24-70 173-214 (228)
22 TIGR01957 nuoB_fam NADH-quinon 68.3 14 0.00031 24.8 4.6 32 24-55 58-89 (145)
23 PF10856 DUF2678: Protein of u 68.2 3.2 7E-05 27.3 1.3 33 4-36 6-40 (118)
24 COG1237 Metal-dependent hydrol 63.4 15 0.00033 27.1 4.2 47 28-74 169-222 (259)
25 PF02310 B12-binding: B12 bind 63.1 31 0.00067 20.8 5.2 49 21-69 50-101 (121)
26 KOG0097|consensus 62.9 12 0.00027 26.1 3.5 25 19-43 111-144 (215)
27 TIGR00696 wecB_tagA_cpsF bacte 60.7 33 0.00072 23.3 5.3 40 24-64 48-87 (177)
28 PRK13307 bifunctional formalde 60.6 9.4 0.0002 29.4 2.8 39 23-66 329-367 (391)
29 cd00331 IGPS Indole-3-glycerol 59.8 15 0.00031 25.0 3.4 46 23-73 171-217 (217)
30 PRK08091 ribulose-phosphate 3- 58.7 18 0.0004 25.9 3.9 40 22-66 177-216 (228)
31 PRK01130 N-acetylmannosamine-6 58.0 23 0.00049 24.2 4.1 43 25-72 174-217 (221)
32 TIGR01861 ANFD nitrogenase iro 57.5 14 0.00031 29.2 3.4 42 23-69 229-270 (513)
33 smart00612 Kelch Kelch domain. 56.4 7.5 0.00016 19.2 1.2 9 27-35 2-10 (47)
34 PF06122 TraH: Conjugative rel 55.9 6.8 0.00015 29.4 1.4 25 49-73 56-80 (361)
35 PF01344 Kelch_1: Kelch motif; 54.6 3.9 8.5E-05 20.9 -0.1 10 26-35 13-22 (47)
36 PRK14813 NADH dehydrogenase su 53.4 34 0.00074 24.1 4.4 31 24-54 68-98 (189)
37 PRK08005 epimerase; Validated 52.3 21 0.00046 25.1 3.3 43 26-73 165-207 (210)
38 PRK13306 ulaD 3-keto-L-gulonat 52.0 18 0.00039 25.2 2.9 39 27-70 166-204 (216)
39 PF03808 Glyco_tran_WecB: Glyc 51.1 32 0.00069 22.9 3.9 32 23-54 47-78 (172)
40 PF05990 DUF900: Alpha/beta hy 50.8 58 0.0013 22.8 5.3 30 19-48 14-45 (233)
41 cd01481 vWA_collagen_alpha3-VI 50.8 69 0.0015 21.0 6.7 43 21-64 105-147 (165)
42 PRK14057 epimerase; Provisiona 50.1 27 0.00059 25.5 3.7 42 21-67 190-231 (254)
43 PRK00278 trpC indole-3-glycero 49.6 27 0.00058 25.0 3.5 42 24-70 211-253 (260)
44 PF09176 Mpt_N: Methylene-tetr 49.3 13 0.00029 22.9 1.7 45 27-71 15-65 (81)
45 COG1077 MreB Actin-like ATPase 48.8 43 0.00093 25.7 4.6 37 20-56 99-135 (342)
46 cd06533 Glyco_transf_WecG_TagA 46.4 44 0.00095 22.2 4.0 29 25-54 47-76 (171)
47 PRK08945 putative oxoacyl-(acy 45.6 81 0.0018 21.0 5.3 43 26-70 14-56 (247)
48 KOG3339|consensus 45.5 77 0.0017 22.8 5.2 46 23-68 40-85 (211)
49 TIGR00282 metallophosphoestera 45.5 44 0.00095 24.4 4.2 39 22-63 144-183 (266)
50 cd04729 NanE N-acetylmannosami 45.3 41 0.00088 22.9 3.8 40 24-68 177-217 (219)
51 PRK06411 NADH dehydrogenase su 44.5 35 0.00075 23.9 3.3 35 21-55 72-106 (183)
52 TIGR01501 MthylAspMutase methy 43.7 89 0.0019 20.5 5.1 43 32-74 63-110 (134)
53 cd06259 YdcF-like YdcF-like. Y 43.5 82 0.0018 19.8 5.5 44 24-67 35-84 (150)
54 COG0371 GldA Glycerol dehydrog 42.6 43 0.00094 25.7 3.9 48 24-72 59-108 (360)
55 PF02401 LYTB: LytB protein; 41.9 99 0.0022 22.8 5.6 34 26-59 212-245 (281)
56 PF01743 PolyA_pol: Poly A pol 41.2 79 0.0017 20.0 4.5 37 27-72 1-37 (126)
57 PRK03868 glucose-6-phosphate i 40.8 90 0.002 24.0 5.4 46 26-73 60-108 (410)
58 cd02191 FtsZ FtsZ is a GTPase 40.7 93 0.002 22.8 5.3 38 20-57 244-285 (303)
59 PRK07890 short chain dehydroge 39.7 1E+02 0.0022 20.6 5.0 32 26-59 7-38 (258)
60 PF10138 vWA-TerF-like: vWA fo 39.7 1.1E+02 0.0024 21.6 5.3 50 20-73 102-155 (200)
61 PRK04180 pyridoxal biosynthesi 39.7 93 0.002 23.4 5.1 42 25-71 206-251 (293)
62 PRK07695 transcriptional regul 39.6 40 0.00088 22.6 3.1 33 25-62 150-182 (201)
63 PF01212 Beta_elim_lyase: Beta 38.9 30 0.00065 25.2 2.5 34 30-64 137-172 (290)
64 PRK09722 allulose-6-phosphate 38.9 61 0.0013 23.1 4.0 36 22-62 167-203 (229)
65 COG0513 SrmB Superfamily II DN 38.1 84 0.0018 24.6 5.0 29 25-58 130-158 (513)
66 COG0800 Eda 2-keto-3-deoxy-6-p 38.0 55 0.0012 23.4 3.6 31 38-70 52-82 (211)
67 PRK06512 thiamine-phosphate py 37.8 37 0.00081 23.8 2.7 20 25-44 165-184 (221)
68 PF13964 Kelch_6: Kelch motif 37.8 24 0.00052 18.3 1.4 10 27-36 14-23 (50)
69 PF01408 GFO_IDH_MocA: Oxidore 37.7 52 0.0011 19.6 3.1 25 31-56 95-119 (120)
70 PRK15452 putative protease; Pr 37.6 1.5E+02 0.0032 23.2 6.2 33 33-66 43-75 (443)
71 cd04727 pdxS PdxS is a subunit 37.4 89 0.0019 23.4 4.7 41 25-70 197-241 (283)
72 PTZ00005 phosphoglycerate kina 36.8 80 0.0017 24.7 4.6 35 21-57 203-238 (417)
73 PF11051 Mannosyl_trans3: Mann 36.8 97 0.0021 22.1 4.8 43 26-71 4-51 (271)
74 PF00162 PGK: Phosphoglycerate 36.6 55 0.0012 25.2 3.6 36 21-58 186-222 (384)
75 cd01840 SGNH_hydrolase_yrhL_li 36.5 78 0.0017 20.0 3.9 46 21-70 49-97 (150)
76 PRK14819 NADH dehydrogenase su 36.0 78 0.0017 23.5 4.2 32 24-55 72-103 (264)
77 PF02581 TMP-TENI: Thiamine mo 36.0 21 0.00045 23.7 1.2 19 25-43 150-168 (180)
78 TIGR00343 pyridoxal 5'-phospha 35.9 72 0.0016 23.9 4.1 41 25-70 200-244 (287)
79 PRK07035 short chain dehydroge 35.3 1.4E+02 0.003 19.9 5.5 43 26-70 10-52 (252)
80 cd00318 Phosphoglycerate_kinas 35.1 87 0.0019 24.3 4.5 35 21-57 186-221 (397)
81 TIGR01212 radical SAM protein, 35.1 1.8E+02 0.0038 21.1 6.6 50 23-72 77-131 (302)
82 PRK07028 bifunctional hexulose 35.0 56 0.0012 24.8 3.5 37 25-66 163-199 (430)
83 cd03821 GT1_Bme6_like This fam 34.6 1.4E+02 0.0031 19.9 6.1 39 22-60 201-244 (375)
84 PRK14335 (dimethylallyl)adenos 34.4 45 0.00098 25.7 2.9 42 27-70 73-114 (455)
85 PRK09444 pntB pyridine nucleot 34.4 45 0.00099 26.6 2.9 39 26-64 357-397 (462)
86 PF10087 DUF2325: Uncharacteri 33.7 1.1E+02 0.0023 18.3 5.5 50 20-72 46-95 (97)
87 PLN02896 cinnamyl-alcohol dehy 33.3 1.8E+02 0.0038 20.8 5.7 34 22-57 8-41 (353)
88 KOG3422|consensus 33.2 79 0.0017 22.9 3.8 21 26-46 143-164 (221)
89 KOG0333|consensus 32.6 65 0.0014 26.7 3.6 38 25-72 352-389 (673)
90 PRK08999 hypothetical protein; 32.1 55 0.0012 23.3 2.9 19 26-44 282-300 (312)
91 PRK00103 rRNA large subunit me 31.8 29 0.00063 23.4 1.3 10 24-33 98-107 (157)
92 PF00739 X: Trans-activation p 31.7 16 0.00034 24.7 0.0 15 21-35 125-139 (142)
93 PF13728 TraF: F plasmid trans 31.7 1.3E+02 0.0027 21.0 4.6 35 24-59 123-159 (215)
94 PLN03034 phosphoglycerate kina 31.6 1E+02 0.0023 24.7 4.5 36 20-57 263-299 (481)
95 PRK13723 conjugal transfer pil 31.6 25 0.00054 27.8 1.1 25 49-73 82-106 (451)
96 PRK07775 short chain dehydroge 31.5 1.7E+02 0.0038 20.0 5.3 32 26-59 12-43 (274)
97 PF05193 Peptidase_M16_C: Pept 31.4 52 0.0011 20.1 2.4 22 21-42 16-37 (184)
98 PF01762 Galactosyl_T: Galacto 31.2 63 0.0014 21.4 2.9 45 8-57 8-55 (195)
99 TIGR00246 tRNA_RlmH_YbeA rRNA 30.9 30 0.00065 23.2 1.3 9 25-33 96-104 (153)
100 PRK14816 NADH dehydrogenase su 30.8 1.1E+02 0.0024 21.4 4.1 32 23-54 81-112 (182)
101 PF07646 Kelch_2: Kelch motif; 30.6 34 0.00073 17.8 1.2 7 27-33 14-20 (49)
102 KOG2287|consensus 30.6 94 0.002 23.2 4.0 44 8-56 116-161 (349)
103 COG1901 Uncharacterized conser 30.4 86 0.0019 22.4 3.5 37 26-66 146-185 (197)
104 PRK05867 short chain dehydroge 30.3 1.7E+02 0.0037 19.6 5.6 32 26-59 11-42 (253)
105 PLN02282 phosphoglycerate kina 29.6 78 0.0017 24.7 3.5 36 20-57 188-224 (401)
106 TIGR02617 tnaA_trp_ase tryptop 29.6 1E+02 0.0022 24.7 4.1 46 23-69 189-236 (467)
107 COG0036 Rpe Pentose-5-phosphat 29.4 1.2E+02 0.0026 21.8 4.2 44 24-72 169-212 (220)
108 cd04951 GT1_WbdM_like This fam 29.4 1.9E+02 0.0041 19.7 5.8 37 23-59 187-228 (360)
109 cd01844 SGNH_hydrolase_like_6 29.3 1E+02 0.0023 19.7 3.7 14 24-37 33-46 (177)
110 PF13854 Kelch_5: Kelch motif 29.2 39 0.00084 17.2 1.3 9 27-35 17-25 (42)
111 PF10340 DUF2424: Protein of u 29.1 1.1E+02 0.0024 23.6 4.2 54 9-62 108-166 (374)
112 PRK03512 thiamine-phosphate py 28.9 68 0.0015 22.2 2.8 19 25-43 159-177 (211)
113 COG5039 Exopolysaccharide bios 28.8 1.2E+02 0.0025 23.4 4.2 36 21-56 84-124 (339)
114 COG0003 ArsA Predicted ATPase 28.7 1.3E+02 0.0028 22.5 4.5 32 26-59 4-39 (322)
115 TIGR00216 ispH_lytB (E)-4-hydr 28.5 1.3E+02 0.0028 22.3 4.3 24 25-48 210-233 (280)
116 KOG3079|consensus 28.4 35 0.00076 24.2 1.3 24 25-48 9-32 (195)
117 cd06219 DHOD_e_trans_like1 FAD 28.2 1.9E+02 0.0042 19.9 5.0 34 24-57 98-132 (248)
118 PRK00073 pgk phosphoglycerate 28.1 89 0.0019 24.2 3.6 36 20-57 181-217 (389)
119 PRK09330 cell division protein 28.0 1.9E+02 0.004 22.3 5.3 37 21-57 259-299 (384)
120 cd01482 vWA_collagen_alphaI-XI 27.8 1.7E+02 0.0036 18.6 6.2 50 21-72 102-151 (164)
121 COG0796 MurI Glutamate racemas 27.2 45 0.00098 24.6 1.8 33 23-60 6-40 (269)
122 TIGR01740 pyrF orotidine 5'-ph 27.2 29 0.00062 23.8 0.7 45 26-72 159-211 (213)
123 cd02067 B12-binding B12 bindin 27.0 1.5E+02 0.0033 17.9 6.0 42 21-62 50-93 (119)
124 PLN02645 phosphoglycolate phos 27.0 1.5E+02 0.0033 21.4 4.5 44 29-74 40-85 (311)
125 cd06201 SiR_like2 Cytochrome p 27.0 2.2E+02 0.0049 20.2 5.3 36 24-59 156-191 (289)
126 cd03822 GT1_ecORF704_like This 26.9 2E+02 0.0044 19.4 4.9 38 23-60 184-226 (366)
127 PRK09437 bcp thioredoxin-depen 26.8 1.7E+02 0.0036 18.3 5.1 46 21-68 29-80 (154)
128 PF02698 DUF218: DUF218 domain 26.8 90 0.002 19.7 3.0 20 27-46 41-64 (155)
129 COG0612 PqqL Predicted Zn-depe 26.7 99 0.0021 23.0 3.5 23 21-43 195-217 (438)
130 PRK14325 (dimethylallyl)adenos 25.5 1.5E+02 0.0033 22.5 4.4 14 46-59 71-84 (444)
131 PRK12384 sorbitol-6-phosphate 25.5 2.1E+02 0.0046 19.1 5.6 32 26-59 4-35 (259)
132 cd03807 GT1_WbnK_like This fam 25.4 2E+02 0.0043 19.1 4.6 37 23-59 192-233 (365)
133 COG2242 CobL Precorrin-6B meth 25.0 2.4E+02 0.0052 19.8 5.0 48 26-74 105-152 (187)
134 PF02590 SPOUT_MTase: Predicte 24.9 53 0.0012 22.0 1.7 13 21-33 95-107 (155)
135 cd01568 QPRTase_NadC Quinolina 24.7 1.1E+02 0.0024 22.0 3.4 20 23-42 226-245 (269)
136 PRK13394 3-hydroxybutyrate deh 24.6 2.2E+02 0.0047 18.9 5.7 31 26-58 9-39 (262)
137 cd07361 MEMO_like Memo (mediat 24.5 2.6E+02 0.0056 19.7 5.4 40 22-61 140-181 (266)
138 PTZ00348 tyrosyl-tRNA syntheta 24.4 87 0.0019 26.0 3.1 51 21-71 406-473 (682)
139 PF13344 Hydrolase_6: Haloacid 24.3 87 0.0019 19.0 2.4 24 50-73 30-54 (101)
140 cd02072 Glm_B12_BD B12 binding 24.1 2.1E+02 0.0046 18.6 6.6 44 23-66 52-97 (128)
141 COG1282 PntB NAD/NADP transhyd 23.7 88 0.0019 24.8 2.8 34 32-65 365-400 (463)
142 PRK02083 imidazole glycerol ph 23.6 2.4E+02 0.0053 19.6 4.9 40 25-68 75-115 (253)
143 TIGR00065 ftsZ cell division p 23.3 2.6E+02 0.0057 21.0 5.3 37 21-57 265-305 (349)
144 PRK11150 rfaD ADP-L-glycero-D- 23.2 2.3E+02 0.005 19.6 4.7 32 26-59 1-32 (308)
145 PRK07152 nadD putative nicotin 23.0 1.3E+02 0.0029 22.1 3.6 31 31-62 79-111 (342)
146 PRK08887 nicotinic acid mononu 23.0 1.1E+02 0.0025 20.4 3.0 35 31-66 80-116 (174)
147 TIGR03471 HpnJ hopanoid biosyn 22.9 3.3E+02 0.0071 20.8 5.8 47 23-69 69-117 (472)
148 PF02702 KdpD: Osmosensitive K 22.8 1.3E+02 0.0028 21.6 3.4 38 32-71 17-54 (211)
149 PRK08305 spoVFB dipicolinate s 22.8 1.6E+02 0.0034 20.6 3.8 33 21-55 4-38 (196)
150 PF06723 MreB_Mbl: MreB/Mbl pr 22.6 2.3E+02 0.0051 21.2 4.8 37 20-56 91-127 (326)
151 PF13415 Kelch_3: Galactose ox 22.5 61 0.0013 16.8 1.3 9 27-35 4-12 (49)
152 cd03012 TlpA_like_DipZ_like Tl 22.4 1.9E+02 0.0042 17.5 6.0 43 8-50 7-54 (126)
153 PF09318 DUF1975: Domain of un 22.4 1E+02 0.0022 20.3 2.7 18 30-47 13-30 (203)
154 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.4 2E+02 0.0043 17.6 4.9 37 20-56 59-96 (153)
155 PF06506 PrpR_N: Propionate ca 22.1 1.4E+02 0.003 19.7 3.3 34 24-60 102-135 (176)
156 PRK13962 bifunctional phosphog 22.1 1.9E+02 0.0042 23.9 4.6 35 21-57 185-220 (645)
157 cd02065 B12-binding_like B12 b 22.1 1.9E+02 0.004 17.2 4.6 27 38-64 67-94 (125)
158 PLN02572 UDP-sulfoquinovose sy 21.9 2.6E+02 0.0057 21.3 5.1 29 26-56 49-77 (442)
159 PRK06197 short chain dehydroge 21.9 2.7E+02 0.0058 19.4 4.9 32 26-59 18-49 (306)
160 PRK04452 acetyl-CoA decarbonyl 21.9 1.7E+02 0.0037 22.0 4.0 44 29-73 155-199 (319)
161 PRK05854 short chain dehydroge 21.8 3E+02 0.0065 19.5 5.8 43 26-70 16-58 (313)
162 PRK14814 NADH dehydrogenase su 21.8 2.1E+02 0.0047 20.0 4.2 33 23-55 73-105 (186)
163 PF00834 Ribul_P_3_epim: Ribul 21.7 52 0.0011 22.8 1.2 37 21-62 163-199 (201)
164 PRK07067 sorbitol dehydrogenas 21.7 2.6E+02 0.0056 18.7 5.3 31 26-58 8-38 (257)
165 TIGR01860 VNFD nitrogenase van 21.6 1.2E+02 0.0026 23.5 3.2 19 24-42 229-247 (461)
166 PRK05718 keto-hydroxyglutarate 21.6 1.5E+02 0.0032 20.8 3.4 30 38-69 54-83 (212)
167 PRK12360 4-hydroxy-3-methylbut 21.6 1.5E+02 0.0033 21.9 3.6 24 25-48 211-234 (281)
168 cd08173 Gro1PDH Sn-glycerol-1- 21.4 3.3E+02 0.0072 19.8 5.7 47 24-71 53-101 (339)
169 smart00854 PGA_cap Bacterial c 21.2 1.4E+02 0.003 20.6 3.2 37 21-59 172-214 (239)
170 PRK08643 acetoin reductase; Va 21.2 2.6E+02 0.0057 18.6 5.6 30 26-57 4-33 (256)
171 cd00016 alkPPc Alkaline phosph 21.2 2E+02 0.0042 21.9 4.3 26 21-46 5-30 (384)
172 COG1087 GalE UDP-glucose 4-epi 21.1 1.9E+02 0.004 22.2 4.1 34 27-63 3-36 (329)
173 cd06220 DHOD_e_trans_like2 FAD 21.1 2.8E+02 0.006 18.8 4.8 36 23-58 88-123 (233)
174 cd02812 PcrB_like PcrB_like pr 21.1 2.8E+02 0.006 19.7 4.8 42 24-70 175-217 (219)
175 PRK07062 short chain dehydroge 21.1 2.7E+02 0.0059 18.7 5.4 32 26-59 10-41 (265)
176 COG0826 Collagenase and relate 21.0 2.7E+02 0.0059 21.0 4.9 41 33-74 46-92 (347)
177 COG1576 Uncharacterized conser 21.0 57 0.0012 22.3 1.2 12 21-33 95-106 (155)
178 PRK13237 tyrosine phenol-lyase 21.0 1.5E+02 0.0033 23.5 3.7 37 31-68 191-229 (460)
179 cd02801 DUS_like_FMN Dihydrour 20.9 1.7E+02 0.0037 19.6 3.6 44 23-71 182-227 (231)
180 PRK07523 gluconate 5-dehydroge 20.8 2.7E+02 0.0058 18.6 5.1 30 27-58 13-42 (255)
181 TIGR02700 flavo_MJ0208 archaeo 20.4 2.2E+02 0.0048 19.8 4.2 42 24-65 1-48 (234)
182 PRK11192 ATP-dependent RNA hel 20.4 3.4E+02 0.0075 20.1 5.4 36 25-70 103-138 (434)
183 PF00578 AhpC-TSA: AhpC/TSA fa 20.4 2E+02 0.0043 16.8 3.5 38 21-58 24-67 (124)
184 cd07409 MPP_CD73_N CD73 ecto-5 20.4 2.1E+02 0.0045 20.3 4.1 33 22-59 183-215 (281)
185 TIGR01753 flav_short flavodoxi 20.2 2.2E+02 0.0047 17.2 4.4 16 20-35 78-93 (140)
186 PRK07231 fabG 3-ketoacyl-(acyl 20.1 2.7E+02 0.0058 18.3 5.2 33 26-60 7-39 (251)
No 1
>KOG1300|consensus
Probab=99.82 E-value=3e-20 Score=145.35 Aligned_cols=68 Identities=54% Similarity=0.871 Sum_probs=64.0
Q ss_pred cccccCCCcCCCcc-cccCCCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHh
Q psy8628 3 HIARYGHWHKDRAQ-QQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 3 ~s~~~~~w~~~~~~-~~~~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~ 71 (75)
.|||+|+|.+++.+ ....++|++||||+||+||+|+|++|++++++ +++|+||||+|++|.+|++.|.
T Consensus 514 ~Sar~~~~~~~k~~~~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~-~~EViiGS~~iltP~~fL~~lk 582 (593)
T KOG1300|consen 514 TSARYGHPLSNKTPSAFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKL-NREVIIGSDHILTPTKFLDDLK 582 (593)
T ss_pred ccccccCcccccCcchhhccCceEEEEEeCCccHHHHHHHHHHHHhh-CceEEECCcccCCHHHHHHHHh
Confidence 48999999998887 67889999999999999999999999999998 6999999999999999999997
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=99.66 E-value=1.3e-16 Score=120.79 Aligned_cols=52 Identities=46% Similarity=0.810 Sum_probs=45.3
Q ss_pred cCCCCeEEEEEECCCCHHHHHHHHHHHhhc-CCceEEEecccccChHHHHHHH
Q psy8628 19 VKNVPRLIVFIIGGVSFSEIRCAYEVTNNV-KNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 19 ~~~~~~iiVFvvGGiTy~E~~~i~~l~~~~-~~~~iiiGst~il~~~~fl~~l 70 (75)
..+++++|||||||+||+|++++++++++. ++++|+||||+|+||++|+++|
T Consensus 512 ~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 512 NKPRKRVIVFFVGGVTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp -S-SSEEEEEEETEBEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred cCCCCEEEEEEEcCCcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 456688999999999999999999999987 2499999999999999999986
No 3
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=99.52 E-value=2.5e-14 Score=112.53 Aligned_cols=63 Identities=33% Similarity=0.704 Sum_probs=55.5
Q ss_pred CCcCCCcccccCCCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhcC
Q psy8628 9 HWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 9 ~w~~~~~~~~~~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~l 73 (75)
.| +.+.. ...++++++|||+||+||+|++.+++++.+.++++|++|||.|++|.+||+++..+
T Consensus 515 k~-~~~~~-~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~~~~~ii~Gst~iltp~e~l~~v~~~ 577 (582)
T COG5158 515 KG-RSRSN-KKIPQQRILVFVIGGVTYEELRVLYELNESQNSVRIIYGSTEILTPAEFLDEVKRL 577 (582)
T ss_pred cc-ccccc-cccccceEEEEEECCeehHHHHHHHHHHhhcCCeeEEEcCCceecHHHHHHHHHHh
Confidence 46 54554 67788999999999999999999999999875589999999999999999999765
No 4
>KOG1299|consensus
Probab=99.44 E-value=1.9e-13 Score=105.91 Aligned_cols=56 Identities=21% Similarity=0.516 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhcC
Q psy8628 18 QVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 18 ~~~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~l 73 (75)
...++|.|||||+||+||||++.+++++..+++.+|++|||.|+|...|++++...
T Consensus 493 s~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvvLgGttvlntk~f~~di~~a 548 (549)
T KOG1299|consen 493 SRDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVVLGGTTVLNTKSFIDEIMAA 548 (549)
T ss_pred ccCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEEEcceEEechHHHHHHHhcc
Confidence 45678999999999999999999999998889999999999999999999998754
No 5
>KOG1301|consensus
Probab=99.24 E-value=8.8e-12 Score=97.81 Aligned_cols=57 Identities=26% Similarity=0.506 Sum_probs=51.4
Q ss_pred ccCCCCeEEEEEECCCCHHHHHHHHHHHhhcC-CceEEEecccccChHHHHHHHhcCC
Q psy8628 18 QVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTPEDFLNNLSNLS 74 (75)
Q Consensus 18 ~~~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~-~~~iiiGst~il~~~~fl~~l~~l~ 74 (75)
.+.+.++.|||||||.+|-|+..+.++.+... .++||+|+|.|+||.+|++++..|+
T Consensus 558 ~r~~f~eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg 615 (621)
T KOG1301|consen 558 KRQPFQEAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLG 615 (621)
T ss_pred cccchhheEEEEEcCcCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhc
Confidence 45677999999999999999999999998653 4799999999999999999999876
No 6
>KOG1302|consensus
Probab=99.02 E-value=7e-10 Score=87.77 Aligned_cols=49 Identities=16% Similarity=0.425 Sum_probs=45.3
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
..+.++|||+||+||+|+++++++++.. +.+++|.+|.++|+.++|+.+
T Consensus 551 ~~R~~lVff~GG~T~~EIAalr~l~~~~-~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 551 ALRVTLVFFLGGCTYAEIAALRFLAKLE-GYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred CcceEEEEEECCccHHHHHHHHHHHhhc-CceEEEEeccccchHHHHHhh
Confidence 4677999999999999999999999876 699999999999999999876
No 7
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=87.99 E-value=0.94 Score=30.63 Aligned_cols=42 Identities=17% Similarity=0.401 Sum_probs=30.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHh
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~ 71 (75)
..|.+.||+|-+.++.+.+ . +.++++.|+.|.+.++..+.+.
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~-GaD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----A-GADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----c-CCCEEEEChhhhCCCCHHHHHH
Confidence 5678899999977766654 2 5788888899987666544443
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=83.70 E-value=1.9 Score=30.34 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
..+-|.+.||++-+.+..+.+ . +.++++.|+.|.+.+++.+.+
T Consensus 166 ~~~~I~vdGGI~~eni~~l~~---a--GAd~vVvGSaIf~~~d~~~~i 208 (220)
T PRK08883 166 RDIRLEIDGGVKVDNIREIAE---A--GADMFVAGSAIFGQPDYKAVI 208 (220)
T ss_pred CCeeEEEECCCCHHHHHHHHH---c--CCCEEEEeHHHhCCCCHHHHH
Confidence 357888999999877776643 2 567788788888655544433
No 9
>KOG0148|consensus
Probab=83.12 E-value=2.1 Score=32.19 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=34.5
Q ss_pred cccccCCCcCCCcccccCCCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 3 HIARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 3 ~s~~~~~w~~~~~~~~~~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
|+-|+ +||..|+...+..+ .||+|+-. -++ -.++.|+.|+-.=-..++.|.+.
T Consensus 132 R~IRT-NWATRKp~e~n~~~----------ltfdeV~N---Qss-p~NtsVY~G~I~~~lte~~mr~~ 184 (321)
T KOG0148|consen 132 RTIRT-NWATRKPSEMNGKP----------LTFDEVYN---QSS-PDNTSVYVGNIASGLTEDLMRQT 184 (321)
T ss_pred ceeec-cccccCccccCCCC----------ccHHHHhc---cCC-CCCceEEeCCcCccccHHHHHHh
Confidence 67787 99999985555544 89998643 222 23789999986654445555443
No 10
>PLN02334 ribulose-phosphate 3-epimerase
Probab=82.90 E-value=1.6 Score=30.30 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=28.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
+-|.++||+|-+.+..+.+ . +.++++.|+.|...++..+.+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~----a-Gad~vvvgsai~~~~d~~~~~ 215 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAE----A-GANVIVAGSAVFGAPDYAEVI 215 (229)
T ss_pred CcEEEeCCCCHHHHHHHHH----c-CCCEEEEChHHhCCCCHHHHH
Confidence 4699999999987777653 2 557777777788665544333
No 11
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=82.85 E-value=2 Score=27.85 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=28.2
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHh
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~ 71 (75)
.+-|++.||++-+.+..+.+ . +.+.+..|+.+....+..+.+.
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~-Ga~~i~~g~~i~~~~~~~~~~~ 192 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----A-GADGVAVISAITGADDPAAAAR 192 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----c-CCCEEEEehHhhcCCCHHHHHH
Confidence 46689999999876666543 2 4566766777776555544443
No 12
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=79.59 E-value=3.8 Score=27.31 Aligned_cols=44 Identities=18% Similarity=0.395 Sum_probs=30.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhcC
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~l 73 (75)
+-|++.||+|-+.++.+ .+ . +.+.++-|+.|.++.+.-+.+.++
T Consensus 166 ~~i~v~GGI~~env~~l---~~-~-gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDNAREL---AE-A-GADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHHHHHH---HH-c-CCCEEEEChHHhCCCCHHHHHHHh
Confidence 56889999997655444 33 2 567788888888877766655543
No 13
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=78.84 E-value=2.8 Score=28.00 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=26.1
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHH
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDF 66 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~f 66 (75)
.+-|++.||++-+.++.+.. . +.+.+..++.|.+..+.
T Consensus 160 ~~~v~a~GGI~~~~i~~~~~----~-Ga~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 160 DIPIVAIGGITPENAPEVLE----A-GADGVAVVSAITGAEDP 197 (212)
T ss_pred CCCEEEECCcCHHHHHHHHH----c-CCCEEEEeHHhhcCCCH
Confidence 37789999999876665543 2 56777777778754443
No 14
>PRK10039 hypothetical protein; Provisional
Probab=77.73 E-value=7.2 Score=25.95 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCeEEEEE----ECCCCHHHHHHHHHHHhhcCC---ceEEEe-cccccChHHHHHHHh
Q psy8628 22 VPRLIVFI----IGGVSFSEIRCAYEVTNNVKN---WEVIIG-SSHIMTPEDFLNNLS 71 (75)
Q Consensus 22 ~~~iiVFv----vGGiTy~E~~~i~~l~~~~~~---~~iiiG-st~il~~~~fl~~l~ 71 (75)
.+++||=- =||.|--|.|+++|++..-.. +++++. ...-++-++.++.+.
T Consensus 68 ~p~viIh~le~~EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 68 RTHIIIHALEMNEGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCEEEEEecccCCCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 34566543 389999999999999865332 344443 344466666666554
No 15
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=77.64 E-value=5.1 Score=26.59 Aligned_cols=43 Identities=16% Similarity=0.441 Sum_probs=29.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
+-|++.||++-+.++.+ .+. +.+.++-|+.|.+..+..+.+.+
T Consensus 167 ~pi~v~GGI~~env~~~---~~~--gad~iivgsai~~~~~~~~~~~~ 209 (211)
T cd00429 167 LLIEVDGGINLETIPLL---AEA--GADVLVAGSALFGSDDYAEAIKE 209 (211)
T ss_pred eEEEEECCCCHHHHHHH---HHc--CCCEEEECHHHhCCCCHHHHHHH
Confidence 56889999998655554 332 45777777888877776655544
No 16
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=76.72 E-value=9 Score=23.51 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=26.3
Q ss_pred CCCeEEEEEECC--CCHHHHHHHHHHHhh-c-CCceEEEecc
Q psy8628 21 NVPRLIVFIIGG--VSFSEIRCAYEVTNN-V-KNWEVIIGSS 58 (75)
Q Consensus 21 ~~~~iiVFvvGG--iTy~E~~~i~~l~~~-~-~~~~iiiGst 58 (75)
.-+.++|.|.|| +|+.|+..+-+.-++ . ++.+|+.|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 347899999997 779998888765433 2 5678888854
No 17
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=76.00 E-value=6 Score=26.29 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=30.2
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
..+-|.+.||++.+-+..+ .+. +.+.++.|+.|...++.-+.+.+
T Consensus 157 ~~~~i~~~GGI~~~~i~~~---~~~--Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 157 LGVKVAVAGGITPDTLPEF---KKA--GADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred cCCCEEEECCcCHHHHHHH---Hhc--CCCEEEEeehhcCCCCHHHHHhc
Confidence 4578999999996554443 332 56777777778877666555543
No 18
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.45 E-value=4.5 Score=27.20 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=26.7
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccCh---HHHHHHHh
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTP---EDFLNNLS 71 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~---~~fl~~l~ 71 (75)
.+.|.+.||++.+.+..+. + . +.+.++.|+.|.++ .+.++.+.
T Consensus 158 ~~~i~v~GGI~~~n~~~~~---~-~-Ga~~v~vGsai~~~~d~~~~~~~l~ 203 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVI---K-L-GPDIVIVGGAITKAADPAEAARQIR 203 (206)
T ss_pred CCcEEEECCcCHHHHHHHH---H-c-CCCEEEEeehhcCCCCHHHHHHHHH
Confidence 3456779999998877653 2 2 45666666667764 44444443
No 19
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=74.14 E-value=6 Score=26.30 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=28.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHh
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~ 71 (75)
+=|+..||+|-+.++.+. + . +.+.+..++.|.+.++-.+.+.
T Consensus 153 ~pv~a~GGI~~~~~~~~~---~-~-G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVL---A-A-GADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHHH---H-c-CCCEEEEhHHhhCCCCHHHHHH
Confidence 459999999987766553 2 2 5677777788877665544443
No 20
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=73.83 E-value=6.2 Score=27.98 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHH
Q psy8628 22 VPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLN 68 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~ 68 (75)
...+.|-|=||++-+.++.+.+ . +.++++.|+.|.+..+.-+
T Consensus 169 ~~~~~IeVDGGI~~eti~~l~~---a--GaDi~V~GSaiF~~~d~~~ 210 (223)
T PRK08745 169 GKPIRLEIDGGVKADNIGAIAA---A--GADTFVAGSAIFNAPDYAQ 210 (223)
T ss_pred CCCeeEEEECCCCHHHHHHHHH---c--CCCEEEEChhhhCCCCHHH
Confidence 4468899999999988776643 2 5788888888986544433
No 21
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=72.62 E-value=4.7 Score=28.29 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=29.8
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
.+.|-|-||++-+.+..+.+ . +.++++.|+.|...++..+.+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----a-Gad~iVvGsaI~~a~d~~~~~ 214 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD----A-GANVIVAGSSIFKAKDRKQAI 214 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH----c-CCCEEEEchHHhCCCCHHHHH
Confidence 46788999999997776643 2 567788788888655544433
No 22
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=68.32 E-value=14 Score=24.78 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=24.8
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEE
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVII 55 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iii 55 (75)
-=|.+|-|.+|..+...++++-++.++-+++|
T Consensus 58 aDvllVtG~vt~~~~~~l~~~~e~~p~pk~VI 89 (145)
T TIGR01957 58 ADVMIVAGTVTKKMAPALRRLYDQMPEPKWVI 89 (145)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhccCCceEE
Confidence 45889999999999999998877755444444
No 23
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=68.24 E-value=3.2 Score=27.33 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=25.1
Q ss_pred ccccCCCcCCCcc--cccCCCCeEEEEEECCCCHH
Q psy8628 4 IARYGHWHKDRAQ--QQVKNVPRLIVFIIGGVSFS 36 (75)
Q Consensus 4 s~~~~~w~~~~~~--~~~~~~~~iiVFvvGGiTy~ 36 (75)
++.+|+-.+.+.+ ++..++++++..++|++|.-
T Consensus 6 ~~~~g~~g~~~rPLFGE~~~r~riinliiG~vT~l 40 (118)
T PF10856_consen 6 TRTYGTSGKDNRPLFGETSARDRIINLIIGAVTSL 40 (118)
T ss_pred ccccCCCCcCCCcccCCCCcccEEEEeehHHHHHH
Confidence 3344766665555 78888899999999999973
No 24
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=63.37 E-value=15 Score=27.08 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=36.2
Q ss_pred EEECCCCHHHHHHHHHHHhhcCC--ceEEEecccccChHH-----HHHHHhcCC
Q psy8628 28 FIIGGVSFSEIRCAYEVTNNVKN--WEVIIGSSHIMTPED-----FLNNLSNLS 74 (75)
Q Consensus 28 FvvGGiTy~E~~~i~~l~~~~~~--~~iiiGst~il~~~~-----fl~~l~~l~ 74 (75)
.|+=||+.+.+..+.+.+++..+ ..-+|||.|+.-..+ -++.|.+++
T Consensus 169 vvItGCsH~GI~niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~ 222 (259)
T COG1237 169 VVITGCSHPGIVNIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYLKELG 222 (259)
T ss_pred EEEEcCCcccHHHHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHHHhcC
Confidence 56779999999999988877655 778899999998884 344555554
No 25
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.14 E-value=31 Score=20.77 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=33.4
Q ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHhh-cCCceEEEeccc-ccChHHHHHH
Q psy8628 21 NVPRLIVFII-GGVSFSEIRCAYEVTNN-VKNWEVIIGSSH-IMTPEDFLNN 69 (75)
Q Consensus 21 ~~~~iiVFvv-GGiTy~E~~~i~~l~~~-~~~~~iiiGst~-il~~~~fl~~ 69 (75)
..+++|.+=+ =+-++.++..+.+..++ .++..|++||.+ -..|+++++.
T Consensus 50 ~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~ 101 (121)
T PF02310_consen 50 ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILRE 101 (121)
T ss_dssp TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHH
T ss_pred CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhcc
Confidence 3455554444 57778887777766554 467899999988 5667777764
No 26
>KOG0097|consensus
Probab=62.89 E-value=12 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=20.3
Q ss_pred cCCCCeEEEEEEC---------CCCHHHHHHHHH
Q psy8628 19 VKNVPRLIVFIIG---------GVSFSEIRCAYE 43 (75)
Q Consensus 19 ~~~~~~iiVFvvG---------GiTy~E~~~i~~ 43 (75)
+-..+..+||.+| -+||+|++...+
T Consensus 111 ~ltnpnt~i~lignkadle~qrdv~yeeak~fae 144 (215)
T KOG0097|consen 111 NLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAE 144 (215)
T ss_pred ccCCCceEEEEecchhhhhhcccCcHHHHHHHHh
Confidence 4566788999999 699999988754
No 27
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.67 E-value=33 Score=23.33 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=27.2
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChH
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~ 64 (75)
..=||++||---.=.++...+.+.+|+.+|. |...-.+++
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~-g~~g~f~~~ 87 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIV-GAFGPLEPE 87 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEE-EECCCCChH
Confidence 3557888777666566677788888887765 555555554
No 28
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=60.55 E-value=9.4 Score=29.41 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=27.7
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHH
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDF 66 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~f 66 (75)
..+.|-+.||++.+.+..+. + . +.++++.|+.|....+.
T Consensus 329 ~~~~I~VdGGI~~eti~~l~---~-a-GADivVVGsaIf~a~Dp 367 (391)
T PRK13307 329 GKILVAVAGGVRVENVEEAL---K-A-GADILVVGRAITKSKDV 367 (391)
T ss_pred CCCcEEEECCcCHHHHHHHH---H-c-CCCEEEEeHHHhCCCCH
Confidence 45789999999977755543 3 2 56778878888755443
No 29
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=59.81 E-value=15 Score=25.04 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=30.3
Q ss_pred CeEEEEEECCCCH-HHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhcC
Q psy8628 23 PRLIVFIIGGVSF-SEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 23 ~~iiVFvvGGiTy-~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~l 73 (75)
..+.|+..||++- ++++.+.++ +.+-++-|+.|..+.+..+.+.+|
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~-----Ga~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEA-----GADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc-----CCCEEEECHHHcCCCCHHHHHHhC
Confidence 3567888899965 777776543 345566667777777766665543
No 30
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=58.73 E-value=18 Score=25.86 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=30.4
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHH
Q psy8628 22 VPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDF 66 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~f 66 (75)
.-.+.|-|=||++-+.++.+.+ . +.++++.|+.+.+.+++
T Consensus 177 ~~~~~IeVDGGI~~~ti~~l~~---a--GaD~~V~GSalF~~~d~ 216 (228)
T PRK08091 177 RVEKLISIDGSMTLELASYLKQ---H--QIDWVVSGSALFSQGEL 216 (228)
T ss_pred CCCceEEEECCCCHHHHHHHHH---C--CCCEEEEChhhhCCCCH
Confidence 4468899999999988876643 2 67889999999854444
No 31
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=58.02 E-value=23 Score=24.21 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=30.5
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 25 LIVFIIGGV-SFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 25 iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
+-|+..||+ |-+++..+.+. +.+.++-|+.|..+.+..+.+.+
T Consensus 174 iPvia~GGI~t~~~~~~~l~~-----GadgV~iGsai~~~~~~~~~~~~ 217 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALEL-----GAHAVVVGGAITRPEEITKWFVD 217 (221)
T ss_pred CCEEEECCCCCHHHHHHHHHC-----CCCEEEEchHhcCCHHHHHHHHH
Confidence 557789999 67777776542 35667777889988877666543
No 32
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=57.54 E-value=14 Score=29.23 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=28.8
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHH
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNN 69 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~ 69 (75)
=+++..+.||.||+|++.+.+ . ..+|++++.......++|++
T Consensus 229 l~v~~~~~gg~t~~ei~~~~~---A--~lniv~~~~~~~~~A~~Lee 270 (513)
T TIGR01861 229 IQVLSTFTGNGSYDDLRGMHR---A--HLNVLECARSAEYICNELRK 270 (513)
T ss_pred CeEEEEeCCCCCHHHHHhhcc---C--CEEEEECHHHHHHHHHHHHH
Confidence 355667789999999888753 1 34677777666666666664
No 33
>smart00612 Kelch Kelch domain.
Probab=56.36 E-value=7.5 Score=19.19 Aligned_cols=9 Identities=22% Similarity=0.851 Sum_probs=7.3
Q ss_pred EEEECCCCH
Q psy8628 27 VFIIGGVSF 35 (75)
Q Consensus 27 VFvvGGiTy 35 (75)
||++||.+.
T Consensus 2 iyv~GG~~~ 10 (47)
T smart00612 2 IYVVGGFDG 10 (47)
T ss_pred EEEEeCCCC
Confidence 799999763
No 34
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=55.85 E-value=6.8 Score=29.40 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCceEEEecccccChHHHHHHHhcC
Q psy8628 49 KNWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 49 ~~~~iiiGst~il~~~~fl~~l~~l 73 (75)
++++++.||-+++|+++|++.++.+
T Consensus 56 GGID~f~GsFSfIn~dqlVq~lr~I 80 (361)
T PF06122_consen 56 GGIDLFMGSFSFINSDQLVQMLRNI 80 (361)
T ss_pred CceeccccccccCCHHHHHHHHHHH
Confidence 4789999999999999999988754
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=54.62 E-value=3.9 Score=20.93 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=7.8
Q ss_pred EEEEECCCCH
Q psy8628 26 IVFIIGGVSF 35 (75)
Q Consensus 26 iVFvvGGiTy 35 (75)
-||++||.+-
T Consensus 13 ~iyv~GG~~~ 22 (47)
T PF01344_consen 13 KIYVIGGYDG 22 (47)
T ss_dssp EEEEEEEBES
T ss_pred EEEEEeeecc
Confidence 3799999765
No 36
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=53.40 E-value=34 Score=24.14 Aligned_cols=31 Identities=6% Similarity=0.123 Sum_probs=24.0
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEE
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVI 54 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~ii 54 (75)
-=|++|.|.+|..+...+.++-++.+.-+++
T Consensus 68 ADvllVtG~Vt~km~~~l~~~y~qmPePK~V 98 (189)
T PRK14813 68 SDLMIVAGTVTMKMAERVVRLYEQMPEPRYV 98 (189)
T ss_pred ceEEEEeccCchhhHHHHHHHHHhCCCCCEE
Confidence 4588899999999999999888775443443
No 37
>PRK08005 epimerase; Validated
Probab=52.34 E-value=21 Score=25.12 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=32.6
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhcC
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~l 73 (75)
-|-|=||++-+.+..+.+ . +.++++.|+.+.+.+++-+.+..|
T Consensus 165 ~I~VDGGI~~~~i~~l~~----a-Gad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 165 ECWADGGITLRAARLLAA----A-GAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred CEEEECCCCHHHHHHHHH----C-CCCEEEEChHhhCCCCHHHHHHHH
Confidence 389999999998877653 2 678899999999766666655544
No 38
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=52.02 E-value=18 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=27.3
Q ss_pred EEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 27 VFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 27 VFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
+.|.||++.+.+..+. +. +.++++-|.-|....+..+..
T Consensus 166 i~V~gGI~~~~~~~~~----~~-~ad~~VvGr~I~~a~dp~~a~ 204 (216)
T PRK13306 166 VSVTGGLVVEDLKLFK----GI-PVKTFIAGRAIRGAADPAAAA 204 (216)
T ss_pred EEEcCCCCHhhHHHHh----cC-CCCEEEECCcccCCCCHHHHH
Confidence 8999999999887742 22 356666667788766654443
No 39
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.08 E-value=32 Score=22.92 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=20.1
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEE
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVI 54 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~ii 54 (75)
+..=||++||--=.=.++...|.+.+|+.+|+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEE
Confidence 34468888887533345556677777765544
No 40
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=50.79 E-value=58 Score=22.76 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=21.5
Q ss_pred cCCCCeEEEEEEC-CCCHHHH-HHHHHHHhhc
Q psy8628 19 VKNVPRLIVFIIG-GVSFSEI-RCAYEVTNNV 48 (75)
Q Consensus 19 ~~~~~~iiVFvvG-GiTy~E~-~~i~~l~~~~ 48 (75)
..+.++++|||-| ..+|++. +.+.++....
T Consensus 14 ~~~~~~vlvfVHGyn~~f~~a~~r~aql~~~~ 45 (233)
T PF05990_consen 14 KSPDKEVLVFVHGYNNSFEDALRRAAQLAHDL 45 (233)
T ss_pred hCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3467899999999 8999984 4445555443
No 41
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=50.79 E-value=69 Score=20.99 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=27.0
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChH
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~ 64 (75)
..++++|.|..|-+..++.......+.. +..++--|..-.+.+
T Consensus 105 ~~~kv~vviTdG~s~d~~~~~a~~lr~~-gv~i~~vG~~~~~~~ 147 (165)
T cd01481 105 GVPQFLVLITGGKSQDDVERPAVALKRA-GIVPFAIGARNADLA 147 (165)
T ss_pred CCCeEEEEEeCCCCcchHHHHHHHHHHC-CcEEEEEeCCcCCHH
Confidence 4578999999999988765544433444 566654444423443
No 42
>PRK14057 epimerase; Provisional
Probab=50.10 E-value=27 Score=25.49 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHH
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFL 67 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl 67 (75)
.+..+.|-|=||++-+.+..+.+ . +.++++.|+.+....++-
T Consensus 190 ~~~~~~IeVDGGI~~~ti~~l~~----a-Gad~~V~GSalF~~~d~~ 231 (254)
T PRK14057 190 KREGKIIVIDGSLTQDQLPSLIA----Q-GIDRVVSGSALFRDDRLV 231 (254)
T ss_pred cCCCceEEEECCCCHHHHHHHHH----C-CCCEEEEChHhhCCCCHH
Confidence 34468999999999998877653 2 678899999998554443
No 43
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=49.60 E-value=27 Score=25.01 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=26.4
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 24 RLIVFIIGGV-SFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 24 ~iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
...++-.||+ |-++++.+.+. +.+.++-|+.|..+.+--+.+
T Consensus 211 ~~~vIaegGI~t~ed~~~~~~~-----Gad~vlVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 211 DRLVVSESGIFTPEDLKRLAKA-----GADAVLVGESLMRADDPGAAL 253 (260)
T ss_pred CCEEEEEeCCCCHHHHHHHHHc-----CCCEEEECHHHcCCCCHHHHH
Confidence 3455556666 78888887643 446666677777765554433
No 44
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=49.26 E-value=13 Score=22.92 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=29.4
Q ss_pred EEEECCCCHHHHHHHHHHH------hhcCCceEEEecccccChHHHHHHHh
Q psy8628 27 VFIIGGVSFSEIRCAYEVT------NNVKNWEVIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 27 VFvvGGiTy~E~~~i~~l~------~~~~~~~iiiGst~il~~~~fl~~l~ 71 (75)
|+=-||+|-+|+..+-.=+ +..++.-|+|||.++.-..++++..+
T Consensus 15 v~py~~V~~~~V~~LvqdaIFsR~P~~~~~TaiFIGG~d~~~a~dml~~ak 65 (81)
T PF09176_consen 15 VIPYGGVTPDEVRGLVQDAIFSRGPKDLKRTAIFIGGRDVALAEDMLEAAK 65 (81)
T ss_dssp EEEESS--TTTHHHHHHHHHSSS-GGGGGGEEEEEE-S-HHHHHHHHHHHH
T ss_pred EeccCCcCHHHhhhhhcceeEccCCcCCceeEEEECCccHHHHHHHHHHHH
Confidence 3445899999988875422 11235689999999999999998765
No 45
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=48.77 E-value=43 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=31.9
Q ss_pred CCCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEe
Q psy8628 20 KNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIG 56 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiG 56 (75)
...++++|++=.|+|=-|-|++.|-..+...++|++.
T Consensus 99 ~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~li 135 (342)
T COG1077 99 FPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLI 135 (342)
T ss_pred CCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEe
Confidence 5667899999999999999999998877666777765
No 46
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=46.38 E-value=44 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=17.6
Q ss_pred EEEEEECCCCHHHHHH-HHHHHhhcCCceEE
Q psy8628 25 LIVFIIGGVSFSEIRC-AYEVTNNVKNWEVI 54 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~-i~~l~~~~~~~~ii 54 (75)
.=||++|| +-+++.. ...+.+.+|+.+|+
T Consensus 47 ~~v~llG~-~~~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 47 LRVFLLGA-KPEVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred CeEEEECC-CHHHHHHHHHHHHHHCCCcEEE
Confidence 34667755 4555444 44677778877655
No 47
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=45.58 E-value=81 Score=21.03 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=27.1
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
.|+|.||..+-=...++.|.+. +.+|++-+.+--...++.+++
T Consensus 14 ~vlItG~~g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 14 IILVTGAGDGIGREAALTYARH--GATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHH
Confidence 5888998888777777777764 567766554433333344433
No 48
>KOG3339|consensus
Probab=45.52 E-value=77 Score=22.78 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=35.4
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHH
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLN 68 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~ 68 (75)
+.++|+=-||=|=|=++-+..+.+.+..+..++|.|+=.+.++|=.
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~ 85 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARS 85 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEEEecCchhhHHHHHh
Confidence 4566666788887777777778888878899999998888776643
No 49
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=45.51 E-value=44 Score=24.38 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=26.6
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecc-cccCh
Q psy8628 22 VPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSS-HIMTP 63 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst-~il~~ 63 (75)
.+-+||.+-.|.|++ -+++..+-+ .+.++++|+. |+.|.
T Consensus 144 ~d~IIVd~HaeatsE-K~a~~~~ld--g~vsaVvGtHtHV~Ta 183 (266)
T TIGR00282 144 CDLIFVDFHAETTSE-KNAFGMAFD--GYVTAVVGTHTHVPTA 183 (266)
T ss_pred CCEEEEEeCCCCHHH-HHHHHHHhC--CCccEEEeCCCCCCCC
Confidence 457999999999986 444444443 3678999974 45444
No 50
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=45.26 E-value=41 Score=22.94 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=28.6
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhhcCCceEEEecccccChHHHHH
Q psy8628 24 RLIVFIIGGV-SFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLN 68 (75)
Q Consensus 24 ~iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~ 68 (75)
.+-|+..||+ |.++++.+.+ . +.+.++-|+.|..++++..
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~----~-GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALE----L-GADAVVVGSAITRPEHITG 217 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHH----C-CCCEEEEchHHhChHhHhh
Confidence 3667889999 5766666543 2 3567777788998888764
No 51
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=44.48 E-value=35 Score=23.89 Aligned_cols=35 Identities=6% Similarity=0.054 Sum_probs=25.6
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEE
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVII 55 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iii 55 (75)
+.+-=|++|-|.+|..+...+.++-++.++-+++|
T Consensus 72 Pr~aDvllV~G~vt~~~~~~l~~~~e~mp~pk~VI 106 (183)
T PRK06411 72 PRQADLMIVAGTLTNKMAPALRRLYDQMPEPKWVI 106 (183)
T ss_pred CCceeEEEEEeCCCccchHHHHHHHHHcCcCCeEE
Confidence 33456889999999999888888777654444444
No 52
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.74 E-value=89 Score=20.54 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHhhc--CCceEEEecccccChHHHHH---HHhcCC
Q psy8628 32 GVSFSEIRCAYEVTNNV--KNWEVIIGSSHIMTPEDFLN---NLSNLS 74 (75)
Q Consensus 32 GiTy~E~~~i~~l~~~~--~~~~iiiGst~il~~~~fl~---~l~~l~ 74 (75)
|-|...++.+.+.-++. ....|++||.-.+.++++-+ .|.+++
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~G 110 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMG 110 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcC
Confidence 67777777766554433 24567778877777666542 354443
No 53
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=43.47 E-value=82 Score=19.75 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=26.0
Q ss_pred eEEEEEECCCC----HHHHHHHHHHHhhc--CCceEEEecccccChHHHH
Q psy8628 24 RLIVFIIGGVS----FSEIRCAYEVTNNV--KNWEVIIGSSHIMTPEDFL 67 (75)
Q Consensus 24 ~iiVFvvGGiT----y~E~~~i~~l~~~~--~~~~iiiGst~il~~~~fl 67 (75)
.-.|++.||.+ ++|...++++..+. +..+|++-....-|-+...
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~ 84 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENAR 84 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHH
Confidence 44556678774 56888877776654 2346666555555544443
No 54
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=42.58 E-value=43 Score=25.66 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=33.3
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEE--EecccccChHHHHHHHhc
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVI--IGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~ii--iGst~il~~~~fl~~l~~ 72 (75)
...+.++|.+|++|+..+....... +.+++ |||=.++...+++.....
T Consensus 59 ~~~~~~~~~a~~~ev~~~~~~~~~~-~~d~vIGVGGGk~iD~aK~~A~~~~ 108 (360)
T COG0371 59 VVHVVFVGEASEEEVERLAAEAGED-GADVVIGVGGGKTIDTAKAAAYRLG 108 (360)
T ss_pred ceeeeecCccCHHHHHHHHHHhccc-CCCEEEEecCcHHHHHHHHHHHHcC
Confidence 5678899999999999988766532 34566 456666666666555443
No 55
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=41.86 E-value=99 Score=22.76 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=23.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
+++||||-.=+--+.|++++++....-+.|-+-.
T Consensus 212 ~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~ 245 (281)
T PF02401_consen 212 AMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETAD 245 (281)
T ss_dssp EEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGG
T ss_pred EEEEecCCCCccHHHHHHHHHHhCCCEEEeCCcc
Confidence 7889999999999999999998633344444433
No 56
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=41.20 E-value=79 Score=19.95 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=19.2
Q ss_pred EEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 27 VFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 27 VFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
+|+|||+ +|++--..+..++=|..+ .+|.+|.+.+.+
T Consensus 1 ~ylVGG~-------VRD~Llg~~~~DiDi~~~--~~~~~~~~~l~~ 37 (126)
T PF01743_consen 1 AYLVGGA-------VRDLLLGRPPKDIDIVTN--ADPEEFAKLLAK 37 (126)
T ss_dssp EEEETHH-------HHHHHHTS--SEEEEEES--S-HHHHHHHHCT
T ss_pred CEEecHH-------HHHHHcCCCCCCeEEEEe--CCHHHHHHHHHh
Confidence 5888884 444432222234433333 677787777754
No 57
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=40.78 E-value=90 Score=24.05 Aligned_cols=46 Identities=24% Similarity=0.324 Sum_probs=30.1
Q ss_pred EEEEEC-CCCHHHHHHHHHHHhhcC--CceEEEecccccChHHHHHHHhcC
Q psy8628 26 IVFIIG-GVSFSEIRCAYEVTNNVK--NWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 26 iVFvvG-GiTy~E~~~i~~l~~~~~--~~~iiiGst~il~~~~fl~~l~~l 73 (75)
-|+++| |.||-..+.+++...... ..++.+.. + ++|.+|...+..+
T Consensus 60 ~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~-n-~dp~~~~~~l~~~ 108 (410)
T PRK03868 60 NIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLE-N-TDPISINKTLSKI 108 (410)
T ss_pred EEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEe-c-CCHHHHHHHHhcC
Confidence 466778 999999999999654221 34565442 2 2588887776543
No 58
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=40.65 E-value=93 Score=22.84 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=28.3
Q ss_pred CCCCeEEEEEECC--CCHHHHHHHHHHHhh-c-CCceEEEec
Q psy8628 20 KNVPRLIVFIIGG--VSFSEIRCAYEVTNN-V-KNWEVIIGS 57 (75)
Q Consensus 20 ~~~~~iiVFvvGG--iTy~E~~~i~~l~~~-~-~~~~iiiGs 57 (75)
..-++++|.|.|| ++..|+..+.++-++ . ++.+|+.|-
T Consensus 244 ~~A~~~Lv~i~g~~~l~~~e~~~~~~~i~~~~~~~~~i~~G~ 285 (303)
T cd02191 244 EGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGD 285 (303)
T ss_pred ccCCEEEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEee
Confidence 3447899999998 889999998887443 3 356777773
No 59
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.74 E-value=1e+02 Score=20.57 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=21.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
.|||.||.++-=...+..+.++ +.+|++.+-+
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~--G~~V~~~~r~ 38 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARA--GADVVLAART 38 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHc--CCEEEEEeCC
Confidence 3788998887666666666653 5677776543
No 60
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=39.67 E-value=1.1e+02 Score=21.61 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=33.3
Q ss_pred CCCCeEEEEEECCCCHHHHHHHHHHHhhc--C-CceEE-EecccccChHHHHHHHhcC
Q psy8628 20 KNVPRLIVFIIGGVSFSEIRCAYEVTNNV--K-NWEVI-IGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy~E~~~i~~l~~~~--~-~~~ii-iGst~il~~~~fl~~l~~l 73 (75)
...|.+|+||--|..+.+-..-+.|.+.. | -++++ ||..+ -.||+.|..|
T Consensus 102 ~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~----f~fL~kLD~l 155 (200)
T PF10138_consen 102 SDAPALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSN----FGFLEKLDDL 155 (200)
T ss_pred CCCCeEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCc----chHHHHhhcc
Confidence 34588999999999998854444444432 1 13333 67776 7788888776
No 61
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=39.66 E-value=93 Score=23.40 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=27.4
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhhcCCceEEEeccccc---ChHHHHHHHh
Q psy8628 25 LIVFIIGGV-SFSEIRCAYEVTNNVKNWEVIIGSSHIM---TPEDFLNNLS 71 (75)
Q Consensus 25 iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~iiiGst~il---~~~~fl~~l~ 71 (75)
+|-|..||+ |.+.++.+.++ +.+=+.-++.|. +|....+.+.
T Consensus 206 VV~~AeGGI~TPedaa~vme~-----GAdgVaVGSaI~ks~dP~~~akafv 251 (293)
T PRK04180 206 VVNFAAGGIATPADAALMMQL-----GADGVFVGSGIFKSGDPEKRARAIV 251 (293)
T ss_pred EEEEEeCCCCCHHHHHHHHHh-----CCCEEEEcHHhhcCCCHHHHHHHHH
Confidence 444899999 99998888753 333344445664 6766655553
No 62
>PRK07695 transcriptional regulator TenI; Provisional
Probab=39.62 E-value=40 Score=22.64 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=23.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccC
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMT 62 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~ 62 (75)
+=|+.+||++-+.+..+. + . +.+.+..++.|.+
T Consensus 150 ipvia~GGI~~~~~~~~~---~-~-Ga~gvav~s~i~~ 182 (201)
T PRK07695 150 IPVIAIGGITPENTRDVL---A-A-GVSGIAVMSGIFS 182 (201)
T ss_pred CCEEEEcCCCHHHHHHHH---H-c-CCCEEEEEHHHhc
Confidence 568899999887766664 2 3 4566766666765
No 63
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=38.95 E-value=30 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=26.0
Q ss_pred ECC--CCHHHHHHHHHHHhhcCCceEEEecccccChH
Q psy8628 30 IGG--VSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64 (75)
Q Consensus 30 vGG--iTy~E~~~i~~l~~~~~~~~iiiGst~il~~~ 64 (75)
.|| .|.+|+++++++.+++ +..+.+=|.++.+..
T Consensus 137 ~GG~~~s~~el~ai~~~a~~~-gl~lhmDGARl~~a~ 172 (290)
T PF01212_consen 137 AGGTVYSLEELRAISELAREH-GLPLHMDGARLANAA 172 (290)
T ss_dssp TTSB---HHHHHHHHHHHHHH-T-EEEEEETTHHHHH
T ss_pred CCCeeCCHHHHHHHHHHHHhC-ceEEEEehhhHHHhh
Confidence 366 6778999999999988 789999888887654
No 64
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=38.87 E-value=61 Score=23.09 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=25.7
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecc-cccC
Q psy8628 22 VPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSS-HIMT 62 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst-~il~ 62 (75)
+..+.|-|=||++-+-+..+. +. +.++++.|+ .+..
T Consensus 167 ~~~~~IeVDGGI~~~~i~~~~---~a--Gad~~V~Gss~iF~ 203 (229)
T PRK09722 167 GLEYLIEVDGSCNQKTYEKLM---EA--GADVFIVGTSGLFN 203 (229)
T ss_pred CCCeEEEEECCCCHHHHHHHH---Hc--CCCEEEEChHHHcC
Confidence 446899999999988776654 32 567777664 4765
No 65
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=38.10 E-value=84 Score=24.61 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecc
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSS 58 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst 58 (75)
-++.++||.++..-. ..|.+ +.+|+||+.
T Consensus 130 ~~~~i~GG~~~~~q~--~~l~~---~~~ivVaTP 158 (513)
T COG0513 130 RVAVVYGGVSIRKQI--EALKR---GVDIVVATP 158 (513)
T ss_pred cEEEEECCCCHHHHH--HHHhc---CCCEEEECc
Confidence 389999999997644 33433 479999943
No 66
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=37.99 E-value=55 Score=23.43 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 38 IRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 38 ~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
..+++.+.++++ +++||.=.++||+++-+..
T Consensus 52 ~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 52 LEAIRALAKEFP--EALIGAGTVLNPEQARQAI 82 (211)
T ss_pred HHHHHHHHHhCc--ccEEccccccCHHHHHHHH
Confidence 356777888886 8999999999999987654
No 67
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.82 E-value=37 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.6
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q psy8628 25 LIVFIIGGVSFSEIRCAYEV 44 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l 44 (75)
+=||-+||+|-+.+..+.+.
T Consensus 165 iPvvAIGGI~~~n~~~~~~~ 184 (221)
T PRK06512 165 IPCIVQAGSDLASAVEVAET 184 (221)
T ss_pred CCEEEEeCCCHHHHHHHHHh
Confidence 44899999999999888753
No 68
>PF13964 Kelch_6: Kelch motif
Probab=37.76 E-value=24 Score=18.33 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=8.3
Q ss_pred EEEECCCCHH
Q psy8628 27 VFIIGGVSFS 36 (75)
Q Consensus 27 VFvvGGiTy~ 36 (75)
|||+||-+..
T Consensus 14 iyv~GG~~~~ 23 (50)
T PF13964_consen 14 IYVFGGYDNS 23 (50)
T ss_pred EEEECCCCCC
Confidence 7999998774
No 69
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=37.66 E-value=52 Score=19.59 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCceEEEe
Q psy8628 31 GGVSFSEIRCAYEVTNNVKNWEVIIG 56 (75)
Q Consensus 31 GGiTy~E~~~i~~l~~~~~~~~iiiG 56 (75)
-+.|.+|++.+.++.++. +..+.+|
T Consensus 95 ~~~~~~~~~~l~~~a~~~-~~~~~Vg 119 (120)
T PF01408_consen 95 LALTLEEAEELVEAAKEK-GVKVMVG 119 (120)
T ss_dssp SSSSHHHHHHHHHHHHHH-TSCEEEE
T ss_pred CcCCHHHHHHHHHHHHHh-CCEEEEe
Confidence 377999999999998876 5566665
No 70
>PRK15452 putative protease; Provisional
Probab=37.61 E-value=1.5e+02 Score=23.15 Aligned_cols=33 Identities=0% Similarity=-0.019 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHhhcCCceEEEecccccChHHH
Q psy8628 33 VSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDF 66 (75)
Q Consensus 33 iTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~f 66 (75)
.+.+|++.+.++..+. +++|++.-..+...+++
T Consensus 43 f~~edl~eav~~ah~~-g~kvyvt~n~i~~e~el 75 (443)
T PRK15452 43 FNHENLALGINEAHAL-GKKFYVVVNIAPHNAKL 75 (443)
T ss_pred CCHHHHHHHHHHHHHc-CCEEEEEecCcCCHHHH
Confidence 4778899888888776 78999988888877665
No 71
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=37.38 E-value=89 Score=23.37 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=26.9
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhhcCCceEEEeccccc---ChHHHHHHH
Q psy8628 25 LIVFIIGGV-SFSEIRCAYEVTNNVKNWEVIIGSSHIM---TPEDFLNNL 70 (75)
Q Consensus 25 iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~iiiGst~il---~~~~fl~~l 70 (75)
+|+|-.||+ |.+.++.+.+. +.+-+.-++.|. +|....+.+
T Consensus 197 VV~iAeGGI~Tpena~~v~e~-----GAdgVaVGSAI~~a~dP~~~tk~f 241 (283)
T cd04727 197 VVNFAAGGVATPADAALMMQL-----GADGVFVGSGIFKSENPEKRARAI 241 (283)
T ss_pred eEEEEeCCCCCHHHHHHHHHc-----CCCEEEEcHHhhcCCCHHHHHHHH
Confidence 444899999 99999888753 334455556665 465555544
No 72
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=36.79 E-value=80 Score=24.72 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=23.7
Q ss_pred CCCeEEEEEECCCCHHH-HHHHHHHHhhcCCceEEEec
Q psy8628 21 NVPRLIVFIIGGVSFSE-IRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E-~~~i~~l~~~~~~~~iiiGs 57 (75)
++++=+|+|+||.-.++ +..+..|.++- -.|++||
T Consensus 203 ~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~--D~iligG 238 (417)
T PTZ00005 203 NPQRPFLAILGGAKVADKIQLIKNLLDKV--DEMIIGG 238 (417)
T ss_pred CCCCceEEEEcCccHHhHHHHHHHHHHhc--CEEEECc
Confidence 56677889999998877 66666665442 2556555
No 73
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=36.75 E-value=97 Score=22.14 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=26.0
Q ss_pred EEEEECCCCHHH-----HHHHHHHHhhcCCceEEEecccccChHHHHHHHh
Q psy8628 26 IVFIIGGVSFSE-----IRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 26 iVFvvGGiTy~E-----~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~ 71 (75)
||..+|+ .|.. ++.+|.+..++| ++|++-+.+=+ +.++.+.|.
T Consensus 4 IVi~~g~-~~~~~a~~lI~~LR~~g~~LP-IEI~~~~~~dl-~~~~~~~l~ 51 (271)
T PF11051_consen 4 IVITAGD-KYLWLALRLIRVLRRLGNTLP-IEIIYPGDDDL-SKEFCEKLL 51 (271)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHhCCCCC-EEEEeCCcccc-CHHHHHHHh
Confidence 6777777 4444 455555555564 89999883333 555555554
No 74
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=36.56 E-value=55 Score=25.24 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=24.6
Q ss_pred CCCeEEEEEECCCCHHH-HHHHHHHHhhcCCceEEEecc
Q psy8628 21 NVPRLIVFIIGGVSFSE-IRCAYEVTNNVKNWEVIIGSS 58 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E-~~~i~~l~~~~~~~~iiiGst 58 (75)
++++=+++|+||.-.++ +..+..|.++- -.++|||-
T Consensus 186 ~~~rP~vaIlGGaKvsdKi~vl~~Ll~kv--D~liigG~ 222 (384)
T PF00162_consen 186 NPKRPFVAILGGAKVSDKIGVLENLLDKV--DKLIIGGG 222 (384)
T ss_dssp S-SSSEEEEEESS-HHHHHHHHHHHTTTS--SEEEEETT
T ss_pred CCCCCeEEEEeCCchHhHHHHHHHHHHHH--HHHeeChh
Confidence 45666899999999987 66666666553 37888863
No 75
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=36.53 E-value=78 Score=20.00 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=26.4
Q ss_pred CCCeEEEEEECC--C-CHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 21 NVPRLIVFIIGG--V-SFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 21 ~~~~iiVFvvGG--i-Ty~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
..++++|+.+|+ . +-++++.+.+... ++.+|++.+.. .|..+.+++
T Consensus 49 ~~~d~vvi~lGtNd~~~~~nl~~ii~~~~--~~~~ivlv~~~--~~~~~~~~~ 97 (150)
T cd01840 49 KLRKTVVIGLGTNGPFTKDQLDELLDALG--PDRQVYLVNPH--VPRPWEPDV 97 (150)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHcC--CCCEEEEEECC--CCcchHHHH
Confidence 346788888884 2 3344555443332 35789888776 455554433
No 76
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=36.02 E-value=78 Score=23.53 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=24.1
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEE
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVII 55 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iii 55 (75)
-=|.+|-|.+|-.+...+.++-++.++.+++|
T Consensus 72 ADIlLVtG~VT~km~~~L~rlyeqmP~PK~VI 103 (264)
T PRK14819 72 ADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVI 103 (264)
T ss_pred ceEEEEecCCchhhHHHHHHHHHhccCCCeEE
Confidence 45889999999999888887777654444444
No 77
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=35.99 E-value=21 Score=23.74 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=13.9
Q ss_pred EEEEEECCCCHHHHHHHHH
Q psy8628 25 LIVFIIGGVSFSEIRCAYE 43 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~ 43 (75)
+=||.+||+|.+.+..+.+
T Consensus 150 ~pv~AlGGI~~~~i~~l~~ 168 (180)
T PF02581_consen 150 IPVYALGGITPENIPELRE 168 (180)
T ss_dssp SCEEEESS--TTTHHHHHH
T ss_pred CCEEEEcCCCHHHHHHHHH
Confidence 5589999999998887764
No 78
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=35.90 E-value=72 Score=23.91 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=26.4
Q ss_pred EEEEEECCC-CHHHHHHHHHHHhhcCCceEEEeccccc---ChHHHHHHH
Q psy8628 25 LIVFIIGGV-SFSEIRCAYEVTNNVKNWEVIIGSSHIM---TPEDFLNNL 70 (75)
Q Consensus 25 iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~iiiGst~il---~~~~fl~~l 70 (75)
+|-|-+||+ |.+.+..+.++ +.+=+.-++.|. +|......+
T Consensus 200 VV~fAiGGI~TPedAa~~mel-----GAdGVaVGSaI~ks~dP~~~akaf 244 (287)
T TIGR00343 200 VVNFAAGGVATPADAALMMQL-----GADGVFVGSGIFKSSNPEKLAKAI 244 (287)
T ss_pred EEEeccCCCCCHHHHHHHHHc-----CCCEEEEhHHhhcCCCHHHHHHHH
Confidence 444899999 99988888653 334344455665 566655444
No 79
>PRK07035 short chain dehydrogenase; Provisional
Probab=35.30 E-value=1.4e+02 Score=19.94 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=27.0
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
.|+|.||.+.-=...++.|.+. +.+|++-+.+.-..+++.+++
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQ--GAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH
Confidence 4788898888766677777664 567777765433333444443
No 80
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=35.08 E-value=87 Score=24.33 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=24.8
Q ss_pred CCCeEEEEEECCCCHHH-HHHHHHHHhhcCCceEEEec
Q psy8628 21 NVPRLIVFIIGGVSFSE-IRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E-~~~i~~l~~~~~~~~iiiGs 57 (75)
++++=+++|+||.-.+. +..+..|.++- -.++|||
T Consensus 186 ~p~rP~vaIlGGaKvsdKi~vl~~Ll~kv--D~liigG 221 (397)
T cd00318 186 NPERPFVAILGGAKVSDKIQVIENLLDKV--DYLIIGG 221 (397)
T ss_pred CCCCCeEEEEcCccHHhHHHHHHHHHHhc--CEEEECc
Confidence 56777899999999977 66666666543 2566665
No 81
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=35.06 E-value=1.8e+02 Score=21.14 Aligned_cols=50 Identities=14% Similarity=0.293 Sum_probs=29.5
Q ss_pred CeEEEEEECC----CCHHHHHHHHHHHhhcCC-ceEEEecccccChHHHHHHHhc
Q psy8628 23 PRLIVFIIGG----VSFSEIRCAYEVTNNVKN-WEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 23 ~~iiVFvvGG----iTy~E~~~i~~l~~~~~~-~~iiiGst~il~~~~fl~~l~~ 72 (75)
++.+|||-|| .+.++++.+.+...+.+. ..+.+++.-=.-+.+.++.|..
T Consensus 77 ~~~~iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~ 131 (302)
T TIGR01212 77 KKFIAYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAE 131 (302)
T ss_pred CEEEEEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHH
Confidence 5778899888 667788887776655532 3565654221123344555543
No 82
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=34.96 E-value=56 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=25.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHH
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDF 66 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~f 66 (75)
+=|++.||++-+.+..+.+ . +.+.++.++.|....+.
T Consensus 163 iPI~a~GGI~~~n~~~~l~----a-GAdgv~vGsaI~~~~d~ 199 (430)
T PRK07028 163 IPIAVAGGLDAETAAKAVA----A-GADIVIVGGNIIKSADV 199 (430)
T ss_pred CcEEEECCCCHHHHHHHHH----c-CCCEEEEChHHcCCCCH
Confidence 5588999999877665532 2 45667777778866443
No 83
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=34.61 E-value=1.4e+02 Score=19.94 Aligned_cols=39 Identities=13% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCeEEEEEECCCCHHH-----HHHHHHHHhhcCCceEEEecccc
Q psy8628 22 VPRLIVFIIGGVSFSE-----IRCAYEVTNNVKNWEVIIGSSHI 60 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E-----~~~i~~l~~~~~~~~iiiGst~i 60 (75)
.++..+.++|+..+.. +.++..+.++.++.++++-|..-
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~ 244 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE 244 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC
Confidence 3455677788876532 34444555544567777777643
No 84
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.41 E-value=45 Score=25.67 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 27 VFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 27 VFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
..|+||+ |++..- .++.+..|..++++|..+...-.++++++
T Consensus 73 ~ivv~GC-~a~~~~-~e~~~~~p~vd~v~g~~~~~~~~~~l~~~ 114 (455)
T PRK14335 73 FIILMGC-MAERLH-DEIQKEFPRIDYVVGTFAHARLESIFQEI 114 (455)
T ss_pred EEEEecc-cccchH-HHHHhhCCCCcEEECCCCHHHHHHHHHHH
Confidence 4566776 555433 45555567788899888877766666553
No 85
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=34.36 E-value=45 Score=26.56 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=31.1
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCC--ceEEEecccccChH
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKN--WEVIIGSSHIMTPE 64 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~--~~iiiGst~il~~~ 64 (75)
+..--.++-|+...++-|++.+.++ .-++||..+++||.
T Consensus 357 VLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPa 397 (462)
T PRK09444 357 VLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPA 397 (462)
T ss_pred eEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcc
Confidence 3344459999999999999887654 56789999999995
No 86
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.70 E-value=1.1e+02 Score=18.29 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=37.3
Q ss_pred CCCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 20 KNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
-...++||++.+=++..-+..+.+.+++. ++.+++-- --+...|.+.|.+
T Consensus 46 i~~aD~VIv~t~~vsH~~~~~vk~~akk~-~ip~~~~~--~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 46 IKKADLVIVFTDYVSHNAMWKVKKAAKKY-GIPIIYSR--SRGVSSLERALER 95 (97)
T ss_pred cCCCCEEEEEeCCcChHHHHHHHHHHHHc-CCcEEEEC--CCCHHHHHHHHHh
Confidence 34567999999999999999999999987 66777764 2234456555554
No 87
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=33.26 E-value=1.8e+02 Score=20.84 Aligned_cols=34 Identities=6% Similarity=-0.016 Sum_probs=24.6
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEec
Q psy8628 22 VPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGs 57 (75)
++..-|+|.||..|-=...++.|.+. +.+|++-.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~ 41 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQR--GYTVHATL 41 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe
Confidence 33334889999999888888888764 56776543
No 88
>KOG3422|consensus
Probab=33.25 E-value=79 Score=22.92 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.1
Q ss_pred EEEEECC-CCHHHHHHHHHHHh
Q psy8628 26 IVFIIGG-VSFSEIRCAYEVTN 46 (75)
Q Consensus 26 iVFvvGG-iTy~E~~~i~~l~~ 46 (75)
|+|=+|| ++++|++.....+.
T Consensus 143 Il~EmgG~~~~~~Ar~al~~aa 164 (221)
T KOG3422|consen 143 ILFEMGGDVEEEEARQALLQAA 164 (221)
T ss_pred EEEEeCCcccHHHHHHHHHHHH
Confidence 6788888 99999998776554
No 89
>KOG0333|consensus
Probab=32.64 E-value=65 Score=26.73 Aligned_cols=38 Identities=34% Similarity=0.653 Sum_probs=26.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
=+|-||||.+|+|..- .|+ . +++|+|+ +|-.+++.|.+
T Consensus 352 r~vsvigg~s~EEq~f--qls--~-gceivia-----tPgrLid~Len 389 (673)
T KOG0333|consen 352 RTVSVIGGLSFEEQGF--QLS--M-GCEIVIA-----TPGRLIDSLEN 389 (673)
T ss_pred eEEEEecccchhhhhh--hhh--c-cceeeec-----CchHHHHHHHH
Confidence 3688999999999632 122 2 6788877 67777776653
No 90
>PRK08999 hypothetical protein; Provisional
Probab=32.06 E-value=55 Score=23.34 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.1
Q ss_pred EEEEECCCCHHHHHHHHHH
Q psy8628 26 IVFIIGGVSFSEIRCAYEV 44 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l 44 (75)
=||.+||+|-+.+..+.+.
T Consensus 282 Pv~AiGGI~~~~~~~~~~~ 300 (312)
T PRK08999 282 PVYALGGLGPGDLEEAREH 300 (312)
T ss_pred CEEEECCCCHHHHHHHHHh
Confidence 3999999999998887654
No 91
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=31.79 E-value=29 Score=23.36 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=8.1
Q ss_pred eEEEEEECCC
Q psy8628 24 RLIVFIIGGV 33 (75)
Q Consensus 24 ~iiVFvvGGi 33 (75)
.=++|+|||.
T Consensus 98 ~~i~F~IGGa 107 (157)
T PRK00103 98 SDVAFVIGGA 107 (157)
T ss_pred ccEEEEEcCc
Confidence 3599999985
No 92
>PF00739 X: Trans-activation protein X; InterPro: IPR000236 The Hepatitis B virus (HBV) X gene shares sequences with both the polymerase and precore genes, carries several regulatory signals critical to the replicative cycle, and its product has a transactivating function []. The transactivating function is probably associated with a tumourigenic potential of HBx, since x gene sequences, encoding functional HBx, have been repeatedly found integrated into the genome of liver carcinoma cells [].; GO: 0019079 viral genome replication; PDB: 3I7H_B 3I7K_B.
Probab=31.73 E-value=16 Score=24.70 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=0.0
Q ss_pred CCCeEEEEEECCCCH
Q psy8628 21 NVPRLIVFIIGGVSF 35 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy 35 (75)
+-.++.|||.||+..
T Consensus 125 ee~RL~iFVLGGCRH 139 (142)
T PF00739_consen 125 EEIRLMIFVLGGCRH 139 (142)
T ss_dssp ---------------
T ss_pred ccceEEEEEecCccc
Confidence 446899999999864
No 93
>PF13728 TraF: F plasmid transfer operon protein
Probab=31.70 E-value=1.3e+02 Score=21.00 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=27.9
Q ss_pred eEEEEEECCCCHHH--HHHHHHHHhhcCCceEEEeccc
Q psy8628 24 RLIVFIIGGVSFSE--IRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 24 ~iiVFvvGGiTy~E--~~~i~~l~~~~~~~~iiiGst~ 59 (75)
-+|+|+-|.|.|.+ .-.++.+++++ +.+|+.-|.+
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~D 159 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLD 159 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecC
Confidence 48888889999976 55678888888 7888877764
No 94
>PLN03034 phosphoglycerate kinase; Provisional
Probab=31.64 E-value=1e+02 Score=24.66 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCCCeEEEEEECCCCHHH-HHHHHHHHhhcCCceEEEec
Q psy8628 20 KNVPRLIVFIIGGVSFSE-IRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy~E-~~~i~~l~~~~~~~~iiiGs 57 (75)
.++++=+++|+||.-.+. +..+..|-++- -.++|||
T Consensus 263 ~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kv--D~lliGG 299 (481)
T PLN03034 263 SNPKRPFAAIVGGSKVSSKIGVIESLLEKC--DILLLGG 299 (481)
T ss_pred cCCCCceEEEEcCccHHhHHHHHHHHHHhc--CEEEECc
Confidence 356777999999999987 56666665543 2566665
No 95
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=31.60 E-value=25 Score=27.80 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCceEEEecccccChHHHHHHHhcC
Q psy8628 49 KNWEVIIGSSHIMTPEDFLNNLSNL 73 (75)
Q Consensus 49 ~~~~iiiGst~il~~~~fl~~l~~l 73 (75)
++++++.||-+++|+++|++.++.+
T Consensus 82 gGID~f~G~fSfin~~~lv~~~k~i 106 (451)
T PRK13723 82 GGIDAYLGSFSFINGEQLQRFVKQI 106 (451)
T ss_pred CcccccccchhhcCHHHHHHHHHHH
Confidence 4789999999999999999887653
No 96
>PRK07775 short chain dehydrogenase; Provisional
Probab=31.49 E-value=1.7e+02 Score=20.00 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=22.4
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
.++|.||..+-=...++.|.++ +.+|++.+.+
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~--G~~V~~~~r~ 43 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAA--GFPVALGARR 43 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5788998888777777777654 5677665543
No 97
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=31.41 E-value=52 Score=20.12 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=18.0
Q ss_pred CCCeEEEEEECCCCHHHHHHHH
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAY 42 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~ 42 (75)
.+..+.++|+|.++.+|+..+.
T Consensus 16 ~p~n~~l~i~Gd~~~~~~~~~i 37 (184)
T PF05193_consen 16 RPSNMTLVIVGDIDPDELEKLI 37 (184)
T ss_dssp SGGGEEEEEEESSGHHHHHHHH
T ss_pred CccceEEEEEcCccHHHHHHHH
Confidence 4568899999999999877653
No 98
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=31.19 E-value=63 Score=21.43 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=25.2
Q ss_pred CCCcCCCcccccCCCCeEEEEEECCCC--HHHHHH-HHHHHhhcCCceEEEec
Q psy8628 8 GHWHKDRAQQQVKNVPRLIVFIIGGVS--FSEIRC-AYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 8 ~~w~~~~~~~~~~~~~~iiVFvvGGiT--y~E~~~-i~~l~~~~~~~~iiiGs 57 (75)
-+|++..... ..+--++|++|-.. =++++. +.+=++++ .+|+++.
T Consensus 8 ~TW~~~~~~~---~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y--~Dil~~d 55 (195)
T PF01762_consen 8 ETWGNQRNFK---GVRVKVVFVVGESPNSDSDLQEALQEEAEKY--GDILQGD 55 (195)
T ss_pred HHHhcccccC---CCcEEEEEEEecCCCCcHHHHHHhhhhhhhc--CceEeee
Confidence 4788854322 25567899998766 344443 33333333 3777753
No 99
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=30.95 E-value=30 Score=23.22 Aligned_cols=9 Identities=33% Similarity=0.715 Sum_probs=7.7
Q ss_pred EEEEEECCC
Q psy8628 25 LIVFIIGGV 33 (75)
Q Consensus 25 iiVFvvGGi 33 (75)
=++|+|||.
T Consensus 96 ~i~FvIGGa 104 (153)
T TIGR00246 96 DVTLLIGGP 104 (153)
T ss_pred eEEEEEcCC
Confidence 399999985
No 100
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=30.81 E-value=1.1e+02 Score=21.44 Aligned_cols=32 Identities=3% Similarity=0.099 Sum_probs=22.0
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEE
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVI 54 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~ii 54 (75)
+-=+++|-|-+|......+..+-+..++-+++
T Consensus 81 hADvllVtG~VT~~m~~~l~~~~e~~p~pK~V 112 (182)
T PRK14816 81 QADMIMVCGTITNKMAPVLKRLYDQMADPKYV 112 (182)
T ss_pred cceEEEEecCCcchhHHHHHHHHHhcCCCCEE
Confidence 34588999999999777777666544333333
No 101
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=30.64 E-value=34 Score=17.80 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=6.2
Q ss_pred EEEECCC
Q psy8628 27 VFIIGGV 33 (75)
Q Consensus 27 VFvvGGi 33 (75)
|||+||.
T Consensus 14 iyv~GG~ 20 (49)
T PF07646_consen 14 IYVFGGY 20 (49)
T ss_pred EEEECCc
Confidence 7889998
No 102
>KOG2287|consensus
Probab=30.59 E-value=94 Score=23.20 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCCcCCCcccccCCCCeEEEEEECCCCHHH--HHHHHHHHhhcCCceEEEe
Q psy8628 8 GHWHKDRAQQQVKNVPRLIVFIIGGVSFSE--IRCAYEVTNNVKNWEVIIG 56 (75)
Q Consensus 8 ~~w~~~~~~~~~~~~~~iiVFvvGGiTy~E--~~~i~~l~~~~~~~~iiiG 56 (75)
.+|...+. -...+...+|++|-.+.++ -+.+.+=++.++ +||++
T Consensus 116 ~TW~~~~~---v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~yg--DIi~~ 161 (349)
T KOG2287|consen 116 KTWGNENN---VRGGRVRVLFLVGLPSNEDKLNKLLADEARLYG--DIIQV 161 (349)
T ss_pred HHhcCccc---cCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhC--CEEEE
Confidence 57777444 3456778899999999886 233333333332 55554
No 103
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=30.44 E-value=86 Score=22.36 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=29.0
Q ss_pred EEEEEC---CCCHHHHHHHHHHHhhcCCceEEEecccccChHHH
Q psy8628 26 IVFIIG---GVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDF 66 (75)
Q Consensus 26 iVFvvG---GiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~f 66 (75)
-+||+| |.|-++.+.+.+... +.|-+|-+.+++..-+
T Consensus 146 p~FIlGDH~g~t~e~~k~L~r~~~----~~ISlGP~~lha~hci 185 (197)
T COG1901 146 PVFILGDHIGLTEEDEKLLERHAA----KKISLGPLSLHADHCI 185 (197)
T ss_pred ceEEeeCCCCCCHHHHHHHHHhhC----ceeEeCchHHHHHHHH
Confidence 589999 999999999877654 3689998887765543
No 104
>PRK05867 short chain dehydrogenase; Provisional
Probab=30.28 E-value=1.7e+02 Score=19.56 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=19.1
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
.++|.||.+.-=...++.|.+. +.+|++.+.+
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~ 42 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEA--GAQVAIAARH 42 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEcCC
Confidence 4677887766555555555543 4567666543
No 105
>PLN02282 phosphoglycerate kinase
Probab=29.62 E-value=78 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCCCeEEEEEECCCCHHH-HHHHHHHHhhcCCceEEEec
Q psy8628 20 KNVPRLIVFIIGGVSFSE-IRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy~E-~~~i~~l~~~~~~~~iiiGs 57 (75)
.++++=+++|+||.-.+. +..+..|-++- -.+++||
T Consensus 188 ~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kv--D~lliGG 224 (401)
T PLN02282 188 ANPKKPFAAIVGGSKVSTKIGVIESLLEKV--DILLLGG 224 (401)
T ss_pred cCCCCCeEEEEcCCcHHhHHHHHHHHHHhh--hhheecc
Confidence 356677899999999988 55555555442 2566666
No 106
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=29.57 E-value=1e+02 Score=24.68 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=37.0
Q ss_pred CeEEEEEECC--CCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHH
Q psy8628 23 PRLIVFIIGG--VSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNN 69 (75)
Q Consensus 23 ~~iiVFvvGG--iTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~ 69 (75)
..+..--.|| ++.+.+++++++++++ +..+.+=+..+.|...|+++
T Consensus 189 ~tlt~N~~GGqpvslenlr~V~~la~~~-GIplhLDgARl~nNA~fIk~ 236 (467)
T TIGR02617 189 ATITCNSAGGQPVSLANLKAVYEIAKKY-DIPVVMDSARFAENAYFIKQ 236 (467)
T ss_pred eeEEEecCCCEEeCHHHHHHHHHHHHHc-CCcEEEEhHHHHHHhhhhhh
Confidence 3455555688 8999999999999998 78999999999986666543
No 107
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.42 E-value=1.2e+02 Score=21.83 Aligned_cols=44 Identities=14% Similarity=0.388 Sum_probs=34.8
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
.+.|-|=||++-+-++.+.+ . +.++++.|+.+.+..++.+.+..
T Consensus 169 ~~~IeVDGGI~~~t~~~~~~----A-Gad~~VaGSalF~~~d~~~~i~~ 212 (220)
T COG0036 169 DILIEVDGGINLETIKQLAA----A-GADVFVAGSALFGADDYKATIRE 212 (220)
T ss_pred CeEEEEeCCcCHHHHHHHHH----c-CCCEEEEEEEEeCCccHHHHHHH
Confidence 88999999999998888753 2 56888888899999776555543
No 108
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=29.38 E-value=1.9e+02 Score=19.74 Aligned_cols=37 Identities=5% Similarity=0.269 Sum_probs=21.4
Q ss_pred CeEEEEEECCCCHHH-----HHHHHHHHhhcCCceEEEeccc
Q psy8628 23 PRLIVFIIGGVSFSE-----IRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E-----~~~i~~l~~~~~~~~iiiGst~ 59 (75)
.+.++.++|..+... +.++..+.++.++.+++|-|..
T Consensus 187 ~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g 228 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG 228 (360)
T ss_pred CCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC
Confidence 455667778776533 4444455554456677766643
No 109
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.30 E-value=1e+02 Score=19.72 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=6.3
Q ss_pred eEEEEEECCCCHHH
Q psy8628 24 RLIVFIIGGVSFSE 37 (75)
Q Consensus 24 ~iiVFvvGGiTy~E 37 (75)
+++=.=+||-|..+
T Consensus 33 ~v~N~g~~G~~~~~ 46 (177)
T cd01844 33 EVINLGFSGNARLE 46 (177)
T ss_pred CeEEeeecccccch
Confidence 34444445554433
No 110
>PF13854 Kelch_5: Kelch motif
Probab=29.18 E-value=39 Score=17.23 Aligned_cols=9 Identities=44% Similarity=0.825 Sum_probs=7.6
Q ss_pred EEEECCCCH
Q psy8628 27 VFIIGGVSF 35 (75)
Q Consensus 27 VFvvGGiTy 35 (75)
+||.||.+.
T Consensus 17 iyi~GG~~~ 25 (42)
T PF13854_consen 17 IYIFGGYSG 25 (42)
T ss_pred EEEEcCccC
Confidence 788999984
No 111
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=29.14 E-value=1.1e+02 Score=23.62 Aligned_cols=54 Identities=9% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCcCCCcccccCCCCeEEEEEECCC-----CHHHHHHHHHHHhhcCCceEEEecccccC
Q psy8628 9 HWHKDRAQQQVKNVPRLIVFIIGGV-----SFSEIRCAYEVTNNVKNWEVIIGSSHIMT 62 (75)
Q Consensus 9 ~w~~~~~~~~~~~~~~iiVFvvGGi-----Ty~E~~~i~~l~~~~~~~~iiiGst~il~ 62 (75)
-|-...+...+.+...||||+-||. +..-+..+..+.+.++..-|++---.+..
T Consensus 108 ~Wlvk~P~~~~pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~SILvLDYsLt~ 166 (374)
T PF10340_consen 108 YWLVKAPNRFKPKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLPEVSILVLDYSLTS 166 (374)
T ss_pred EEEEeCCcccCCCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 4555433222334568999999975 55556666666666655555555444444
No 112
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=28.86 E-value=68 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.9
Q ss_pred EEEEEECCCCHHHHHHHHH
Q psy8628 25 LIVFIIGGVSFSEIRCAYE 43 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~ 43 (75)
+=||-+||+|-+-+..+..
T Consensus 159 ~PV~AiGGI~~~ni~~l~~ 177 (211)
T PRK03512 159 YPTVAIGGISLERAPAVLA 177 (211)
T ss_pred CCEEEECCCCHHHHHHHHH
Confidence 4589999999988888764
No 113
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.84 E-value=1.2e+02 Score=23.39 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=22.3
Q ss_pred CCCeEEEEEECCCCHHH----HHHHHHH-HhhcCCceEEEe
Q psy8628 21 NVPRLIVFIIGGVSFSE----IRCAYEV-TNNVKNWEVIIG 56 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E----~~~i~~l-~~~~~~~~iiiG 56 (75)
.++..+||+.||..+.. ....|+. -+.+++.+||+-
T Consensus 84 ~~~e~~i~~~GGGNlGDLypd~q~fRe~Iistf~d~~iI~l 124 (339)
T COG5039 84 DIPEDIIFFTGGGNLGDLYPDYQNFREKIISTFPDYKIIIL 124 (339)
T ss_pred CCccceEEEeCCCchhhcchhhHHHHHHHHHhCCCCceEec
Confidence 44578999999998765 3334432 234566666653
No 114
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.73 E-value=1.3e+02 Score=22.53 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEEC--CCCHHHHHHHH--HHHhhcCCceEEEeccc
Q psy8628 26 IVFIIG--GVSFSEIRCAY--EVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvG--GiTy~E~~~i~--~l~~~~~~~~iiiGst~ 59 (75)
||||.| |+-=..+.|.. .+++. +.++++.||+
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~~--g~kvLlvStD 39 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAES--GKKVLLVSTD 39 (322)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHc--CCcEEEEEeC
Confidence 677776 77776666663 34443 4568888775
No 115
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=28.52 E-value=1.3e+02 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhc
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNV 48 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~ 48 (75)
=+++||||-.=+--+.|++++++.
T Consensus 210 D~miVVGg~nSsNT~rL~ei~~~~ 233 (280)
T TIGR00216 210 DLMIVIGGKNSSNTTRLYEIAEEH 233 (280)
T ss_pred CEEEEECCCCCchHHHHHHHHHHh
Confidence 367899999999999999999875
No 116
>KOG3079|consensus
Probab=28.42 E-value=35 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=14.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhc
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNV 48 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~ 48 (75)
-||||+||=--.---.+..+.+++
T Consensus 9 ~IifVlGGPGsgKgTqC~kiv~ky 32 (195)
T KOG3079|consen 9 PIIFVLGGPGSGKGTQCEKIVEKY 32 (195)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHc
Confidence 489999975443333444555555
No 117
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=28.21 E-value=1.9e+02 Score=19.88 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=22.4
Q ss_pred eEEEEEECCCCHHHHHHHHH-HHhhcCCceEEEec
Q psy8628 24 RLIVFIIGGVSFSEIRCAYE-VTNNVKNWEVIIGS 57 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~-l~~~~~~~~iiiGs 57 (75)
+=+|||.||+-..=+.++.+ +.+......+++|.
T Consensus 98 ~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~~~ 132 (248)
T cd06219 98 GTVVFVGGGVGIAPIYPIAKALKEAGNRVITIIGA 132 (248)
T ss_pred CeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 34789999988888777544 33332356677775
No 118
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=28.12 E-value=89 Score=24.22 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=24.6
Q ss_pred CCCCeEEEEEECCCCHHH-HHHHHHHHhhcCCceEEEec
Q psy8628 20 KNVPRLIVFIIGGVSFSE-IRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy~E-~~~i~~l~~~~~~~~iiiGs 57 (75)
.++++=+++|+||.-.++ +..+..|.++- -.+++||
T Consensus 181 ~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~--D~liigG 217 (389)
T PRK00073 181 ENPERPFVAILGGAKVSDKIGVLENLLEKV--DKLIIGG 217 (389)
T ss_pred cCCCCCeEEEEcCccHHhHHHHHHHHHHhh--hhheeCh
Confidence 356777999999999977 66666665543 2556654
No 119
>PRK09330 cell division protein FtsZ; Validated
Probab=28.02 E-value=1.9e+02 Score=22.35 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=27.3
Q ss_pred CCCeEEEEEECC--CCHHHHHHHHHHHhh-c-CCceEEEec
Q psy8628 21 NVPRLIVFIIGG--VSFSEIRCAYEVTNN-V-KNWEVIIGS 57 (75)
Q Consensus 21 ~~~~iiVFvvGG--iTy~E~~~i~~l~~~-~-~~~~iiiGs 57 (75)
.-+.++|.|.|| ++..|+..+.+.-++ . +..+|+.|.
T Consensus 259 ~A~~vLv~I~g~~~l~l~e~~~~~~~i~~~~~~~a~Ii~G~ 299 (384)
T PRK09330 259 GAKGVLVNITGGPDLTLFEVEEAAEIIREAADPDANIIFGT 299 (384)
T ss_pred hcceEEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 346799999998 789999888876443 2 356777774
No 120
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.78 E-value=1.7e+02 Score=18.64 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
..+++||++.-|.+..++..+.+..++. +.+|+.-+..-.+ .+.|+++.+
T Consensus 102 ~~~k~iillTDG~~~~~~~~~a~~lk~~-gi~i~~ig~g~~~-~~~L~~ia~ 151 (164)
T cd01482 102 GVPKVVILITDGKSQDDVELPARVLRNL-GVNVFAVGVKDAD-ESELKMIAS 151 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHC-CCEEEEEecCcCC-HHHHHHHhC
Confidence 4577888889999876654333333333 5677655544344 444555543
No 121
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.22 E-value=45 Score=24.63 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=22.9
Q ss_pred CeEEEEE--ECCCCHHHHHHHHHHHhhcCCceEEEecccc
Q psy8628 23 PRLIVFI--IGGVSFSEIRCAYEVTNNVKNWEVIIGSSHI 60 (75)
Q Consensus 23 ~~iiVFv--vGGiTy~E~~~i~~l~~~~~~~~iiiGst~i 60 (75)
+.+.||= |||.|+ ++++.+.+|+.++++-+++-
T Consensus 6 ~~IgvFDSGVGGLsV-----lrei~~~LP~e~~iY~~D~a 40 (269)
T COG0796 6 PPIGVFDSGVGGLSV-----LREIRRQLPDEDIIYVGDTA 40 (269)
T ss_pred CeEEEEECCCCcHHH-----HHHHHHHCCCCcEEEEecCC
Confidence 4555554 678886 45566678888888887764
No 122
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=27.15 E-value=29 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=28.0
Q ss_pred EEEEECCCCHHHHHHH--------HHHHhhcCCceEEEecccccChHHHHHHHhc
Q psy8628 26 IVFIIGGVSFSEIRCA--------YEVTNNVKNWEVIIGSSHIMTPEDFLNNLSN 72 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i--------~~l~~~~~~~~iiiGst~il~~~~fl~~l~~ 72 (75)
++++++|+....-... .++.+ . +.++++.|..|..+++..+.+.+
T Consensus 159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~-~-Gad~iVvGr~I~~~~d~~~~~~~ 211 (213)
T TIGR01740 159 FLILTPGIRLQSKGADDQQRVVTLEDAKE-A-GADVIIVGRGIYAAEDPVEAAKR 211 (213)
T ss_pred ceEEeCCcCCCCCCcCCccccCCHHHHHH-c-CCCEEEEChhhcCCCCHHHHHHH
Confidence 7799999987642221 33332 2 56888888889866555554443
No 123
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.03 E-value=1.5e+02 Score=17.90 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=26.8
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhc-C-CceEEEecccccC
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNV-K-NWEVIIGSSHIMT 62 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~~~-~-~~~iiiGst~il~ 62 (75)
+++-+.+.+.-+-++..+..+.+.-++. + +..|++||.....
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 4444444444477777766665544443 4 6889999988776
No 124
>PLN02645 phosphoglycolate phosphatase
Probab=27.03 E-value=1.5e+02 Score=21.36 Aligned_cols=44 Identities=5% Similarity=0.070 Sum_probs=25.8
Q ss_pred EECCCCHHHHHH-HHHHHhhcCCceEEEecc-cccChHHHHHHHhcCC
Q psy8628 29 IIGGVSFSEIRC-AYEVTNNVKNWEVIIGSS-HIMTPEDFLNNLSNLS 74 (75)
Q Consensus 29 vvGGiTy~E~~~-i~~l~~~~~~~~iiiGst-~il~~~~fl~~l~~l~ 74 (75)
.-|+..|+.+.. +..+.+ . ++++++-+. .--++.++++.|.+|+
T Consensus 40 ~~~~~~~~ga~e~l~~lr~-~-g~~~~~~TN~~~~~~~~~~~~l~~lG 85 (311)
T PLN02645 40 WKGDKLIEGVPETLDMLRS-M-GKKLVFVTNNSTKSRAQYGKKFESLG 85 (311)
T ss_pred EeCCccCcCHHHHHHHHHH-C-CCEEEEEeCCCCCCHHHHHHHHHHCC
Confidence 445555554433 334433 3 567777765 5566788888777664
No 125
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=27.02 E-value=2.2e+02 Score=20.25 Aligned_cols=36 Identities=8% Similarity=0.161 Sum_probs=24.6
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
+=+|||.||+-..=++++-+-........++.|.-+
T Consensus 156 ~~lvlIAgGtGIaP~~s~l~~~~~~~~v~L~~g~r~ 191 (289)
T cd06201 156 APVILIGAGTGIAPLAGFIRANAARRPMHLYWGGRD 191 (289)
T ss_pred CCEEEEecCcCHHHHHHHHHhhhccCCEEEEEEecC
Confidence 348999999988888877653322335677888543
No 126
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=26.88 E-value=2e+02 Score=19.40 Aligned_cols=38 Identities=5% Similarity=0.090 Sum_probs=21.9
Q ss_pred CeEEEEEECCCCHHH-----HHHHHHHHhhcCCceEEEecccc
Q psy8628 23 PRLIVFIIGGVSFSE-----IRCAYEVTNNVKNWEVIIGSSHI 60 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E-----~~~i~~l~~~~~~~~iiiGst~i 60 (75)
++.+|.++|..+... +.++..+.++.++.++++-|..-
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~ 226 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETH 226 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCc
Confidence 445666778766433 44455555554566777766543
No 127
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.81 E-value=1.7e+02 Score=18.32 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=23.7
Q ss_pred CCCeEEEEEECC----CCHHHHHHHHHHHhhcC--CceEEEecccccChHHHHH
Q psy8628 21 NVPRLIVFIIGG----VSFSEIRCAYEVTNNVK--NWEVIIGSSHIMTPEDFLN 68 (75)
Q Consensus 21 ~~~~iiVFvvGG----iTy~E~~~i~~l~~~~~--~~~iiiGst~il~~~~fl~ 68 (75)
+++.++|+|..+ ..-.|+..+.++.+++. +.+++-- ++-++++.-+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I--s~d~~~~~~~ 80 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI--STDKPEKLSR 80 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE--cCCCHHHHHH
Confidence 445577777653 23456666666665542 3444333 3335555443
No 128
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.78 E-value=90 Score=19.67 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=8.2
Q ss_pred EEEECCCCH----HHHHHHHHHHh
Q psy8628 27 VFIIGGVSF----SEIRCAYEVTN 46 (75)
Q Consensus 27 VFvvGGiTy----~E~~~i~~l~~ 46 (75)
|++.||.+. +|...+++...
T Consensus 41 il~SGg~~~~~~~~ea~~~~~~l~ 64 (155)
T PF02698_consen 41 ILFSGGYGHGDGRSEAEAMRDYLI 64 (155)
T ss_dssp EEEE--SSTTHTS-HHHHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHH
Confidence 555565432 45555555443
No 129
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=26.70 E-value=99 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.7
Q ss_pred CCCeEEEEEECCCCHHHHHHHHH
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYE 43 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~ 43 (75)
.+.++.|+|+|.+.-.|+...-+
T Consensus 195 ~p~n~~l~vvGdi~~~~v~~~~~ 217 (438)
T COG0612 195 QPDNMVLVVVGDVDAEEVVELIE 217 (438)
T ss_pred CcCceEEEEecCCCHHHHHHHHH
Confidence 56789999999999999887754
No 130
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.49 E-value=1.5e+02 Score=22.53 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=7.6
Q ss_pred hhcCCceEEEeccc
Q psy8628 46 NNVKNWEVIIGSSH 59 (75)
Q Consensus 46 ~~~~~~~iiiGst~ 59 (75)
+..|+..|++||-+
T Consensus 71 ~~~p~~~vvvgGc~ 84 (444)
T PRK14325 71 EKNPDLIIGVGGCV 84 (444)
T ss_pred HhCCCCEEEEECch
Confidence 33445566666654
No 131
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=25.46 E-value=2.1e+02 Score=19.07 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
.|+|.||.++-=...+..|.+. +.+|++.+.+
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~--g~~vi~~~r~ 35 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEE--GYRVAVADIN 35 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEECC
Confidence 3677777776555555666553 4566665544
No 132
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=25.37 E-value=2e+02 Score=19.13 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=22.5
Q ss_pred CeEEEEEECCCCHHH-----HHHHHHHHhhcCCceEEEeccc
Q psy8628 23 PRLIVFIIGGVSFSE-----IRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E-----~~~i~~l~~~~~~~~iiiGst~ 59 (75)
+..++.++|+.+... +.++..+.++.++.++++.|..
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~ 233 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDG 233 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 445677788877543 4555555555556677776653
No 133
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.04 E-value=2.4e+02 Score=19.80 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=33.6
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHhcCC
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~~l~ 74 (75)
-|||=||.+.+|+-....-.- .++-+++.=.-.+-|-...++.+.+++
T Consensus 105 aiFIGGg~~i~~ile~~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g 152 (187)
T COG2242 105 AIFIGGGGNIEEILEAAWERL-KPGGRLVANAITLETLAKALEALEQLG 152 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcC
Confidence 588999999988766554332 234588887777777777777777654
No 134
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=24.91 E-value=53 Score=21.99 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=8.1
Q ss_pred CCCeEEEEEECCC
Q psy8628 21 NVPRLIVFIIGGV 33 (75)
Q Consensus 21 ~~~~iiVFvvGGi 33 (75)
.+..=|+|+|||.
T Consensus 95 ~g~~~i~F~IGG~ 107 (155)
T PF02590_consen 95 QGKSDIVFIIGGA 107 (155)
T ss_dssp TTS-EEEEEE-BT
T ss_pred cCCceEEEEEecC
Confidence 4555799999965
No 135
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.72 E-value=1.1e+02 Score=22.04 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=16.5
Q ss_pred CeEEEEEECCCCHHHHHHHH
Q psy8628 23 PRLIVFIIGGVSFSEIRCAY 42 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~ 42 (75)
+++.|+.+||+|-+-+..+.
T Consensus 226 ~~i~i~asGGIt~~ni~~~a 245 (269)
T cd01568 226 PRVLLEASGGITLENIRAYA 245 (269)
T ss_pred CCeEEEEECCCCHHHHHHHH
Confidence 46889999999988777764
No 136
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.57 E-value=2.2e+02 Score=18.89 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=21.8
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSS 58 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst 58 (75)
.++|.||.++-=...+..|.+. +.+|++-+-
T Consensus 9 ~vlItGasg~iG~~la~~l~~~--G~~v~~~~r 39 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARA--GAAVAIADL 39 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCeEEEEeC
Confidence 5778898888777777777654 456665543
No 137
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=24.52 E-value=2.6e+02 Score=19.71 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.6
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhh--cCCceEEEeccccc
Q psy8628 22 VPRLIVFIIGGVSFSEIRCAYEVTNN--VKNWEVIIGSSHIM 61 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E~~~i~~l~~~--~~~~~iiiGst~il 61 (75)
.-++|-.++|..+++....+-+.-++ ....-++|+|+++-
T Consensus 140 ~~~iVPi~vg~~~~~~~~~~g~~l~~~~~~~~~~iV~SsDlS 181 (266)
T cd07361 140 DFKIVPILVGDQSPEAAEALAEALSKYLLDPDTLIVISSDFS 181 (266)
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 45677778899999987776665444 33457778887663
No 138
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=24.37 E-value=87 Score=26.03 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=37.3
Q ss_pred CCCeEEEEEEC---------CCCHHHHHHHHHHHhh----c---CCceEEEecccccC-hHHHHHHHh
Q psy8628 21 NVPRLIVFIIG---------GVSFSEIRCAYEVTNN----V---KNWEVIIGSSHIMT-PEDFLNNLS 71 (75)
Q Consensus 21 ~~~~iiVFvvG---------GiTy~E~~~i~~l~~~----~---~~~~iiiGst~il~-~~~fl~~l~ 71 (75)
.+-+++|++.= |.+.++++.+-+...+ . ...+++.||+-++. |+++...+.
T Consensus 406 ~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~v~fv~~sd~~~~~~~~Yw~~v~ 473 (682)
T PTZ00348 406 SDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSEVKIVRENEVILGNPNDFWVSVI 473 (682)
T ss_pred CCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEchHhhhcCchhHHHHHH
Confidence 45567777754 7999999999876654 1 12799999999888 756655544
No 139
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.30 E-value=87 Score=18.98 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=10.8
Q ss_pred CceEEEecccc-cChHHHHHHHhcC
Q psy8628 50 NWEVIIGSSHI-MTPEDFLNNLSNL 73 (75)
Q Consensus 50 ~~~iiiGst~i-l~~~~fl~~l~~l 73 (75)
++++++-|.+= .+++++.+.|..+
T Consensus 30 g~~~~~lTNns~~s~~~~~~~L~~~ 54 (101)
T PF13344_consen 30 GKPVVFLTNNSSRSREEYAKKLKKL 54 (101)
T ss_dssp TSEEEEEES-SSS-HHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHhc
Confidence 34555554443 3335555555544
No 140
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.08 E-value=2.1e+02 Score=18.62 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=30.3
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhc--CCceEEEecccccChHHH
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNV--KNWEVIIGSSHIMTPEDF 66 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~--~~~~iiiGst~il~~~~f 66 (75)
+-+-+-..=|-|+..++.+.++-++. ....|++||.-.+.++++
T Consensus 52 diVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~ 97 (128)
T cd02072 52 DAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDF 97 (128)
T ss_pred CEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhh
Confidence 33444455588888888887766554 257888998877777776
No 141
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=23.71 E-value=88 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcC--CceEEEecccccChHH
Q psy8628 32 GVSFSEIRCAYEVTNNVK--NWEVIIGSSHIMTPED 65 (75)
Q Consensus 32 GiTy~E~~~i~~l~~~~~--~~~iiiGst~il~~~~ 65 (75)
-+-|.+...+-|+++++. ..-++||..+..||.-
T Consensus 365 ~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA 400 (463)
T COG1282 365 KVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAA 400 (463)
T ss_pred cCCHHHHhhHHhhcchhccccEEEEEccCCCCChhh
Confidence 478999999999988765 4567899999999964
No 142
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.57 E-value=2.4e+02 Score=19.57 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEEEECCCC-HHHHHHHHHHHhhcCCceEEEecccccChHHHHH
Q psy8628 25 LIVFIIGGVS-FSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLN 68 (75)
Q Consensus 25 iiVFvvGGiT-y~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~ 68 (75)
+=|.+.||+. ++++..+.+ .+-..|++|+..+-+|+.+-+
T Consensus 75 ipv~~~GGi~s~~~~~~~l~----~Ga~~Viigt~~l~~p~~~~e 115 (253)
T PRK02083 75 IPLTVGGGIRSVEDARRLLR----AGADKVSINSAAVANPELISE 115 (253)
T ss_pred CCEEeeCCCCCHHHHHHHHH----cCCCEEEEChhHhhCcHHHHH
Confidence 4578889988 554555543 223468888888888865544
No 143
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=23.27 E-value=2.6e+02 Score=21.03 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCCeEEEEEECC--CCHHHHHHHHHHHh-hc-CCceEEEec
Q psy8628 21 NVPRLIVFIIGG--VSFSEIRCAYEVTN-NV-KNWEVIIGS 57 (75)
Q Consensus 21 ~~~~iiVFvvGG--iTy~E~~~i~~l~~-~~-~~~~iiiGs 57 (75)
.-+.++|.|.|| ++..|+..+.++-+ .. +..+|+.|.
T Consensus 265 ~A~~~Lv~i~~~~~l~l~ev~~~~~~i~~~~~~~~~Ii~G~ 305 (349)
T TIGR00065 265 GAKGALVHITGGADLTLLEAEEIQEIITSELDQDANIIWGA 305 (349)
T ss_pred cccEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 446799999997 68999888887643 33 356788773
No 144
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=23.24 E-value=2.3e+02 Score=19.58 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=22.6
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
+|+|.||.-|-=...++.|.+. +.++++..++
T Consensus 1 ~ilVtGa~GfiG~~l~~~L~~~--g~~~v~~~~~ 32 (308)
T PRK11150 1 MIIVTGGAGFIGSNIVKALNDK--GITDILVVDN 32 (308)
T ss_pred CEEEecCCcHHHHHHHHHHHhC--CCceEEEecC
Confidence 5899999999887777777764 4455554443
No 145
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=23.00 E-value=1.3e+02 Score=22.11 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHhhcCC--ceEEEecccccC
Q psy8628 31 GGVSFSEIRCAYEVTNNVKN--WEVIIGSSHIMT 62 (75)
Q Consensus 31 GGiTy~E~~~i~~l~~~~~~--~~iiiGst~il~ 62 (75)
+|.+|. +..+..+.+.+|+ .-+++|++.+.+
T Consensus 79 ~~~syt-~~tl~~l~~~~p~~~~~~iiG~D~~~~ 111 (342)
T PRK07152 79 QNVSYT-IDTIKYFKKKYPNDEIYFIIGSDNLEK 111 (342)
T ss_pred CCCCcH-HHHHHHHHHhCCCCcEEEEecHHHhhh
Confidence 567765 4555666666664 466899998877
No 146
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=22.97 E-value=1.1e+02 Score=20.40 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHhhcCC--ceEEEecccccChHHH
Q psy8628 31 GGVSFSEIRCAYEVTNNVKN--WEVIIGSSHIMTPEDF 66 (75)
Q Consensus 31 GGiTy~E~~~i~~l~~~~~~--~~iiiGst~il~~~~f 66 (75)
||-+|. +..+..+.+++++ .-+++|++.+.+=..+
T Consensus 80 ~~~~yT-~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W 116 (174)
T PRK08887 80 DESVTT-YALLTRLQELYPEADLTFVIGPDNFLKFAKF 116 (174)
T ss_pred CCCcch-HHHHHHHHHHCCCCeEEEEEccchHHHHHHh
Confidence 554442 3445555555543 4578888887654443
No 147
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.87 E-value=3.3e+02 Score=20.82 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=27.9
Q ss_pred CeEEEEEECCCCHHHHHHHHH-HHhhcCCceEEEeccccc-ChHHHHHH
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYE-VTNNVKNWEVIIGSSHIM-TPEDFLNN 69 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~-l~~~~~~~~iiiGst~il-~~~~fl~~ 69 (75)
+.+|.|-.=-.+|..+..+.+ +.+..|+..|++||.+.. .|+++++.
T Consensus 69 ~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~ 117 (472)
T TIGR03471 69 YDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQ 117 (472)
T ss_pred CCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhc
Confidence 455555443444544443333 334457889999998854 57777664
No 148
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=22.84 E-value=1.3e+02 Score=21.61 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHHh
Q psy8628 32 GVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 32 GiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l~ 71 (75)
|-||.=.++.+++.++ +.+|+||--+-....+-.+.+.
T Consensus 17 GKTy~ML~ea~~l~~~--G~DVViG~vethgR~et~~l~~ 54 (211)
T PF02702_consen 17 GKTYAMLQEAHRLKEQ--GVDVVIGYVETHGRPETEALLE 54 (211)
T ss_dssp SHHHHHHHHHHHHHHT--T--EEEEE---TT-HHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC--CCCEEEEEecCCCcHHHHHHHc
Confidence 7899999999888765 7999999665554444443333
No 149
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=22.81 E-value=1.6e+02 Score=20.63 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=21.2
Q ss_pred CCCeEEEEEECCCCHHH--HHHHHHHHhhcCCceEEE
Q psy8628 21 NVPRLIVFIIGGVSFSE--IRCAYEVTNNVKNWEVII 55 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E--~~~i~~l~~~~~~~~iii 55 (75)
.++++++-|-||+.--- .+.+++|.+. +.+|.+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~--G~~V~v 38 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE--GAEVTP 38 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC--cCEEEE
Confidence 45789999999765433 5666767553 455543
No 150
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=22.62 E-value=2.3e+02 Score=21.16 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEe
Q psy8628 20 KNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIG 56 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiG 56 (75)
...++++|.+=.++|--|-+++++.....+-++|++-
T Consensus 91 ~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li 127 (326)
T PF06723_consen 91 FFRPRVVICVPSGITEVERRALIDAARQAGARKVYLI 127 (326)
T ss_dssp SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEE
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3578999999999999999999999887655677664
No 151
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=22.47 E-value=61 Score=16.76 Aligned_cols=9 Identities=22% Similarity=0.707 Sum_probs=6.9
Q ss_pred EEEECCCCH
Q psy8628 27 VFIIGGVSF 35 (75)
Q Consensus 27 VFvvGGiTy 35 (75)
+||.||.+-
T Consensus 4 ~~vfGG~~~ 12 (49)
T PF13415_consen 4 LYVFGGYDD 12 (49)
T ss_pred EEEECCcCC
Confidence 688899773
No 152
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=22.38 E-value=1.9e+02 Score=17.47 Aligned_cols=43 Identities=5% Similarity=0.037 Sum_probs=23.9
Q ss_pred CCCcCCCccc--ccCCCCeEEEEEEC-CCC--HHHHHHHHHHHhhcCC
Q psy8628 8 GHWHKDRAQQ--QVKNVPRLIVFIIG-GVS--FSEIRCAYEVTNNVKN 50 (75)
Q Consensus 8 ~~w~~~~~~~--~~~~~~~iiVFvvG-GiT--y~E~~~i~~l~~~~~~ 50 (75)
++|.....+. +.-..+-++|+|.+ .+. -.|+..+.++.++++.
T Consensus 7 ~~w~~~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~ 54 (126)
T cd03012 7 LQWLNTDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD 54 (126)
T ss_pred hhhhcCCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc
Confidence 6788763221 12234445555544 333 2678888888887753
No 153
>PF09318 DUF1975: Domain of unknown function (DUF1975); InterPro: IPR015397 This domain is functionally uncharacterised and found predominantly in the N-terminal region of various prokaryotic alpha-glucosyltransferases.
Probab=22.37 E-value=1e+02 Score=20.28 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=15.4
Q ss_pred ECCCCHHHHHHHHHHHhh
Q psy8628 30 IGGVSFSEIRCAYEVTNN 47 (75)
Q Consensus 30 vGGiTy~E~~~i~~l~~~ 47 (75)
-||++++++..+..+.+.
T Consensus 13 ~sGie~A~~~R~~lF~~~ 30 (203)
T PF09318_consen 13 NSGIEHAQLKRLKLFKEN 30 (203)
T ss_pred cchhHHHHHHHHHHHHHC
Confidence 369999999999988874
No 154
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.35 E-value=2e+02 Score=17.64 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=21.7
Q ss_pred CCCCeEEEEEE-CCCCHHHHHHHHHHHhhcCCceEEEe
Q psy8628 20 KNVPRLIVFII-GGVSFSEIRCAYEVTNNVKNWEVIIG 56 (75)
Q Consensus 20 ~~~~~iiVFvv-GGiTy~E~~~i~~l~~~~~~~~iiiG 56 (75)
.+++.++|++. .|-|.+++..+.+..++.+..-|.|.
T Consensus 59 ~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it 96 (153)
T cd05009 59 VDEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVIT 96 (153)
T ss_pred ccCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEe
Confidence 35566777777 56667767766666655533333343
No 155
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.15 E-value=1.4e+02 Score=19.74 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=21.5
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccc
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHI 60 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~i 60 (75)
.+.+|.+ -+.+|+..+-+-.... +.++++||...
T Consensus 102 ~i~~~~~--~~~~e~~~~i~~~~~~-G~~viVGg~~~ 135 (176)
T PF06506_consen 102 DIKIYPY--DSEEEIEAAIKQAKAE-GVDVIVGGGVV 135 (176)
T ss_dssp EEEEEEE--SSHHHHHHHHHHHHHT-T--EEEESHHH
T ss_pred ceEEEEE--CCHHHHHHHHHHHHHc-CCcEEECCHHH
Confidence 4555555 4688887776655444 79999999754
No 156
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=22.10 E-value=1.9e+02 Score=23.91 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=25.3
Q ss_pred CCCeEEEEEECCCCHHH-HHHHHHHHhhcCCceEEEec
Q psy8628 21 NVPRLIVFIIGGVSFSE-IRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E-~~~i~~l~~~~~~~~iiiGs 57 (75)
++++=+|+|+||.-.+. +..+..|-++- -.++|||
T Consensus 185 ~p~rP~vaIlGGaKvsdKi~vl~~ll~~~--D~iligG 220 (645)
T PRK13962 185 NPQRPFVAILGGAKVSDKIGVIENLLEKV--DKLLIGG 220 (645)
T ss_pred CCCCceEEEEcCccHHhHHHHHHHHHHhC--CEEEECc
Confidence 56777999999999977 66666665543 2667774
No 157
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.06 E-value=1.9e+02 Score=17.20 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcC-CceEEEecccccChH
Q psy8628 38 IRCAYEVTNNVK-NWEVIIGSSHIMTPE 64 (75)
Q Consensus 38 ~~~i~~l~~~~~-~~~iiiGst~il~~~ 64 (75)
++.+..+.++.+ +..|++||.+.....
T Consensus 67 ~~~~~~~~~~~p~~~~ivvGG~~~t~~~ 94 (125)
T cd02065 67 MKLVIEALKELGIDIPVVVGGAHPTADP 94 (125)
T ss_pred HHHHHHHHHhcCCCCeEEEeCCcCCccc
Confidence 455555666666 799999997766544
No 158
>PLN02572 UDP-sulfoquinovose synthase
Probab=21.93 E-value=2.6e+02 Score=21.27 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=23.1
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEe
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIG 56 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiG 56 (75)
-|+|.||..|-=...++.|.++ +.+|++-
T Consensus 49 ~VLVTGatGfIGs~Lv~~L~~~--G~~V~~~ 77 (442)
T PLN02572 49 KVMVIGGDGYCGWATALHLSKR--GYEVAIV 77 (442)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCeEEEE
Confidence 3899999999888888888875 5677763
No 159
>PRK06197 short chain dehydrogenase; Provisional
Probab=21.91 E-value=2.7e+02 Score=19.38 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=20.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
.|+|.||...-=...++.|.+. +.+|++.+-+
T Consensus 18 ~vlItGas~gIG~~~a~~l~~~--G~~vi~~~r~ 49 (306)
T PRK06197 18 VAVVTGANTGLGYETAAALAAK--GAHVVLAVRN 49 (306)
T ss_pred EEEEcCCCCcHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5678887776655566666654 5677776544
No 160
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=21.87 E-value=1.7e+02 Score=22.02 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=29.5
Q ss_pred EECCCCHHHHHHHHHHHhhcCCceEEEec-ccccChHHHHHHHhcC
Q psy8628 29 IIGGVSFSEIRCAYEVTNNVKNWEVIIGS-SHIMTPEDFLNNLSNL 73 (75)
Q Consensus 29 vvGGiTy~E~~~i~~l~~~~~~~~iiiGs-t~il~~~~fl~~l~~l 73 (75)
+++++|.+-+..+-.+.+++ ++.|+.-+ .++--..+....+.++
T Consensus 155 LInSat~en~~~i~~lA~~y-~~~Vva~s~~Dln~ak~L~~~l~~~ 199 (319)
T PRK04452 155 LLGSAEEDNYKKIAAAAMAY-GHAVIAWSPLDINLAKQLNILLTEL 199 (319)
T ss_pred EEEECCHHHHHHHHHHHHHh-CCeEEEEcHHHHHHHHHHHHHHHHc
Confidence 67788988888888888888 56776666 5544444444444443
No 161
>PRK05854 short chain dehydrogenase; Provisional
Probab=21.78 E-value=3e+02 Score=19.49 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=26.0
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
.++|.||-+.-=...++.|.+. +.+|++.+-+.-..++.++++
T Consensus 16 ~~lITGas~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH
Confidence 4678887765555556666653 578888765444444455444
No 162
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=21.78 E-value=2.1e+02 Score=20.05 Aligned_cols=33 Identities=6% Similarity=0.290 Sum_probs=23.4
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEEE
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVII 55 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iii 55 (75)
+-=|++|-|-+|......+..+-++.+.-+++|
T Consensus 73 ~ADvllVtG~VT~~m~~~l~~~yeqmp~pk~VI 105 (186)
T PRK14814 73 QADMILVLGTITYKMAPVLRQIYDQMAEPKFVI 105 (186)
T ss_pred cceEEEEeccCchhhHHHHHHHHHhcCCCCeEE
Confidence 345889999999998777777766654444443
No 163
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.72 E-value=52 Score=22.81 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=27.3
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccC
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMT 62 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~ 62 (75)
.+..+.|-|=||+|.+.+..+.+. +.++++.|+.+.+
T Consensus 163 ~~~~~~I~vDGGI~~~~~~~~~~a-----Gad~~V~Gs~iF~ 199 (201)
T PF00834_consen 163 NGLDFEIEVDGGINEENIKQLVEA-----GADIFVAGSAIFK 199 (201)
T ss_dssp HTCGSEEEEESSESTTTHHHHHHH-----T--EEEESHHHHT
T ss_pred cCCceEEEEECCCCHHHHHHHHHc-----CCCEEEECHHHhC
Confidence 346789999999999988877642 5688888877654
No 164
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=21.66 E-value=2.6e+02 Score=18.68 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=20.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSS 58 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst 58 (75)
.++|.||.++-=...++.|.++ +.+|++...
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~--G~~v~~~~r 38 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAE--GARVVIADI 38 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHc--CCEEEEEcC
Confidence 4788998888666666666654 566666543
No 165
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=21.63 E-value=1.2e+02 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.655 Sum_probs=12.5
Q ss_pred eEEEEEECCCCHHHHHHHH
Q psy8628 24 RLIVFIIGGVSFSEIRCAY 42 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~ 42 (75)
+++.++-||.||+|++.+.
T Consensus 229 ~v~~~~~g~~t~~ei~~~~ 247 (461)
T TIGR01860 229 QVIAHFTGNGTYDDLRCMH 247 (461)
T ss_pred cEEEEeCCCCCHHHHHhcc
Confidence 4455666788888877653
No 166
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.62 E-value=1.5e+02 Score=20.83 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCCceEEEecccccChHHHHHH
Q psy8628 38 IRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNN 69 (75)
Q Consensus 38 ~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~ 69 (75)
..+++.+.++++ +++||...+++++++-..
T Consensus 54 ~~~I~~l~~~~p--~~~IGAGTVl~~~~a~~a 83 (212)
T PRK05718 54 LEAIRLIAKEVP--EALIGAGTVLNPEQLAQA 83 (212)
T ss_pred HHHHHHHHHHCC--CCEEEEeeccCHHHHHHH
Confidence 345566666665 688999999999776443
No 167
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.57 E-value=1.5e+02 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=19.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhc
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNV 48 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~ 48 (75)
=+++||||-.=+--+.|++++++.
T Consensus 211 D~miVVGg~~SsNT~rL~eia~~~ 234 (281)
T PRK12360 211 DVMIVIGGKHSSNTQKLVKICEKN 234 (281)
T ss_pred CEEEEecCCCCccHHHHHHHHHHH
Confidence 367888888888888888888765
No 168
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=21.40 E-value=3.3e+02 Score=19.82 Aligned_cols=47 Identities=9% Similarity=0.239 Sum_probs=33.7
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhhcCCceEE--EecccccChHHHHHHHh
Q psy8628 24 RLIVFIIGGVSFSEIRCAYEVTNNVKNWEVI--IGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 24 ~iiVFvvGGiTy~E~~~i~~l~~~~~~~~ii--iGst~il~~~~fl~~l~ 71 (75)
.+.+|+.+-.|++.+..+.+..++. +.+++ |||=.++.-..|+..+.
T Consensus 53 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~d~iIaiGGGs~~D~aK~~a~~~ 101 (339)
T cd08173 53 EVDVVIVEDATYEEVEKVESSARDI-GADFVIGVGGGRVIDVAKVAAYKL 101 (339)
T ss_pred CeEEEEeCCCCHHHHHHHHHHhhhc-CCCEEEEeCCchHHHHHHHHHHhc
Confidence 5566788888999999888877754 34444 67877777777776443
No 169
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=21.25 E-value=1.4e+02 Score=20.60 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCeEEEEEECCCCHHH------HHHHHHHHhhcCCceEEEeccc
Q psy8628 21 NVPRLIVFIIGGVSFSE------IRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E------~~~i~~l~~~~~~~~iiiGst~ 59 (75)
...-+||+.-.|.-|+. ...++++.+ .+.++|||+..
T Consensus 172 ~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~--~G~DvIiG~H~ 214 (239)
T smart00854 172 KADVVIVSLHWGVEYQYEPTDEQRELAHALID--AGADVVIGHHP 214 (239)
T ss_pred cCCEEEEEecCccccCCCCCHHHHHHHHHHHH--cCCCEEEcCCC
Confidence 34668888999987742 233344433 37899999753
No 170
>PRK08643 acetoin reductase; Validated
Probab=21.22 E-value=2.6e+02 Score=18.58 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=18.5
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEec
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGS 57 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGs 57 (75)
.++|.||.++-=...++.|.+. +.+|++.+
T Consensus 4 ~~lItGas~giG~~la~~l~~~--G~~v~~~~ 33 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVED--GFKVAIVD 33 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEe
Confidence 4667887777655555666553 45666554
No 171
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=21.20 E-value=2e+02 Score=21.95 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCCeEEEEEECCCCHHHHHHHHHHHh
Q psy8628 21 NVPRLIVFIIGGVSFSEIRCAYEVTN 46 (75)
Q Consensus 21 ~~~~iiVFvvGGiTy~E~~~i~~l~~ 46 (75)
+++.||+||.=|..++.+.+.+-+..
T Consensus 5 ~~kNVIl~igDGmg~~~~taar~~~~ 30 (384)
T cd00016 5 KAKNVILFIGDGMGVSTITAARIYKG 30 (384)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 46788888888999999999886654
No 172
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.13 E-value=1.9e+02 Score=22.23 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=25.9
Q ss_pred EEEECCCCHHHHHHHHHHHhhcCCceEEEecccccCh
Q psy8628 27 VFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTP 63 (75)
Q Consensus 27 VFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~ 63 (75)
|.|.||+-|-=...+.+|.+. +.+|++- +++-|+
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~--G~~vvV~-DNL~~g 36 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKT--GHEVVVL-DNLSNG 36 (329)
T ss_pred EEEecCcchhHHHHHHHHHHC--CCeEEEE-ecCCCC
Confidence 678999999999999998874 6677765 444443
No 173
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=21.10 E-value=2.8e+02 Score=18.80 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=24.4
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEecc
Q psy8628 23 PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSS 58 (75)
Q Consensus 23 ~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst 58 (75)
.+-+|||.||+-..=+.++-+-.....+..+++|..
T Consensus 88 ~~~~vliAgGtGitP~~sil~~~~~~~~i~l~~~~r 123 (233)
T cd06220 88 GGKVLLIGGGIGIAPLAPLAERLKKAADVTVLLGAR 123 (233)
T ss_pred CCeEEEEecCcChHHHHHHHHHHHhcCCEEEEEecC
Confidence 356899999999988777655332224567777753
No 174
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.09 E-value=2.8e+02 Score=19.69 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=21.8
Q ss_pred eEEEEEECCC-CHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 24 RLIVFIIGGV-SFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 24 ~iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
.+-+++=||+ |.+.++.+. +. +.+.++-||-+.+.-+++.++
T Consensus 175 ~~pl~vGGGIrs~e~a~~l~---~a--GAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 175 DTPLIVGGGIRSGEQAKEMA---EA--GADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHH---Hc--CCCEEEECchhhCCHHHHHHH
Confidence 3456677788 455555543 21 234444455555555555443
No 175
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.06 E-value=2.7e+02 Score=18.67 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=18.5
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
.++|.||-..-=...++.+.+. +.+|++.+.+
T Consensus 10 ~~lItGas~giG~~ia~~l~~~--G~~V~~~~r~ 41 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEA--GASVAICGRD 41 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCC
Confidence 5677887665444455555543 4566665443
No 176
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=2.7e+02 Score=21.04 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHhhcCCceEEEecccccChH------HHHHHHhcCC
Q psy8628 33 VSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE------DFLNNLSNLS 74 (75)
Q Consensus 33 iTy~E~~~i~~l~~~~~~~~iiiGst~il~~~------~fl~~l~~l~ 74 (75)
-|.+|++.+.+++.+. ++++++-.+.++.+. ++++.|.+++
T Consensus 46 fs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 46 FSVEDLAEAVELAHSA-GKKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred CCHHHHHHHHHHHHHc-CCeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 5888999999999887 677888777776654 3455555443
No 177
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=57 Score=22.34 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=9.0
Q ss_pred CCCeEEEEEECCC
Q psy8628 21 NVPRLIVFIIGGV 33 (75)
Q Consensus 21 ~~~~iiVFvvGGi 33 (75)
.+ +-|+|+|||.
T Consensus 95 ~G-~~i~f~IGG~ 106 (155)
T COG1576 95 DG-RDISFLIGGA 106 (155)
T ss_pred cC-CeEEEEEeCc
Confidence 44 6689999975
No 178
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=20.96 E-value=1.5e+02 Score=23.46 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=30.6
Q ss_pred CC--CCHHHHHHHHHHHhhcCCceEEEecccccChHHHHH
Q psy8628 31 GG--VSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLN 68 (75)
Q Consensus 31 GG--iTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~ 68 (75)
|| ++.++++.++++++++ +..+++=+.+.+....||+
T Consensus 191 GGqpvs~~~m~~I~elA~~~-Gl~Vi~DaAra~gna~fI~ 229 (460)
T PRK13237 191 GGQPVSMANMRAVRELCDKH-GIKVFFDATRCVENAYFIK 229 (460)
T ss_pred CCeeCCHHhHHHHHHHHHHc-CCEEEEECcchhcChhhhc
Confidence 67 4467999999999988 7899999999888776663
No 179
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.88 E-value=1.7e+02 Score=19.57 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=27.0
Q ss_pred CeEEEEEECCC-CHHHHHHHHHHHhhcCCce-EEEecccccChHHHHHHHh
Q psy8628 23 PRLIVFIIGGV-SFSEIRCAYEVTNNVKNWE-VIIGSSHIMTPEDFLNNLS 71 (75)
Q Consensus 23 ~~iiVFvvGGi-Ty~E~~~i~~l~~~~~~~~-iiiGst~il~~~~fl~~l~ 71 (75)
.++-|+..||+ |++++..+.+.. +.+ |.+|.--+.+|. ++..+.
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~----gad~V~igr~~l~~P~-~~~~~~ 227 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQT----GVDGVMIGRGALGNPW-LFREIK 227 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhc----CCCEEEEcHHhHhCCH-HHHhhh
Confidence 45778889999 688777665431 334 556666666665 444443
No 180
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.82 E-value=2.7e+02 Score=18.56 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=19.6
Q ss_pred EEEECCCCHHHHHHHHHHHhhcCCceEEEecc
Q psy8628 27 VFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSS 58 (75)
Q Consensus 27 VFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst 58 (75)
|+|.||...-=...++.+.++ +.+|++.+.
T Consensus 13 vlItGa~g~iG~~ia~~l~~~--G~~V~~~~r 42 (255)
T PRK07523 13 ALVTGSSQGIGYALAEGLAQA--GAEVILNGR 42 (255)
T ss_pred EEEECCcchHHHHHHHHHHHc--CCEEEEEeC
Confidence 678888777666666666553 567766543
No 181
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=20.42 E-value=2.2e+02 Score=19.83 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=26.1
Q ss_pred eEEEEEEC-CCC-HHHHHHHHHHHhhcCC--ceEEE--ecccccChHH
Q psy8628 24 RLIVFIIG-GVS-FSEIRCAYEVTNNVKN--WEVII--GSSHIMTPED 65 (75)
Q Consensus 24 ~iiVFvvG-GiT-y~E~~~i~~l~~~~~~--~~iii--Gst~il~~~~ 65 (75)
++++.|-| |+. |.=..-+++|.+..++ .++++ .+..+++|..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~ 48 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYG 48 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhh
Confidence 47788888 677 5667777777765333 44444 3445666654
No 182
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=20.41 E-value=3.4e+02 Score=20.15 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=21.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHhhcCCceEEEecccccChHHHHHHH
Q psy8628 25 LIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNL 70 (75)
Q Consensus 25 iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~il~~~~fl~~l 70 (75)
-+..+.||..|.+-..+. ..+.+|+||+ |..+++.+
T Consensus 103 ~v~~~~gg~~~~~~~~~l-----~~~~~IlV~T-----p~rl~~~~ 138 (434)
T PRK11192 103 DIATITGGVAYMNHAEVF-----SENQDIVVAT-----PGRLLQYI 138 (434)
T ss_pred EEEEEECCCCHHHHHHHh-----cCCCCEEEEC-----hHHHHHHH
Confidence 355678999987754332 1246888874 55555443
No 183
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.38 E-value=2e+02 Score=16.84 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=21.1
Q ss_pred CCCeEEEEEECC--C--CHHHHHHHHHHHhhcC--CceEEEecc
Q psy8628 21 NVPRLIVFIIGG--V--SFSEIRCAYEVTNNVK--NWEVIIGSS 58 (75)
Q Consensus 21 ~~~~iiVFvvGG--i--Ty~E~~~i~~l~~~~~--~~~iiiGst 58 (75)
.++.+||++..+ + ...|+..+.++.++++ +.+++.-++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~ 67 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST 67 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc
Confidence 445566666655 2 3445566666665543 567665554
No 184
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=20.37 E-value=2.1e+02 Score=20.32 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhhcCCceEEEeccc
Q psy8628 22 VPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59 (75)
Q Consensus 22 ~~~iiVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~ 59 (75)
..-+|+..-.|..+. .+++++.++.++||||..
T Consensus 183 ~D~II~l~H~G~~~d-----~~la~~~~giD~IiggH~ 215 (281)
T cd07409 183 VNKIIALSHSGYEVD-----KEIARKVPGVDVIVGGHS 215 (281)
T ss_pred CCEEEEEeccCchhH-----HHHHHcCCCCcEEEeCCc
Confidence 344555556675432 355666788999999853
No 185
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=20.22 E-value=2.2e+02 Score=17.23 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=13.0
Q ss_pred CCCCeEEEEEECCCCH
Q psy8628 20 KNVPRLIVFIIGGVSF 35 (75)
Q Consensus 20 ~~~~~iiVFvvGGiTy 35 (75)
.+.+++.||-.||-.|
T Consensus 78 ~~gk~~~vfgt~g~~~ 93 (140)
T TIGR01753 78 LGGKKVALFGSGDWGY 93 (140)
T ss_pred CCCCEEEEEecCCCCc
Confidence 3567899999998887
No 186
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.06 E-value=2.7e+02 Score=18.25 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=21.3
Q ss_pred EEEEECCCCHHHHHHHHHHHhhcCCceEEEecccc
Q psy8628 26 IVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHI 60 (75)
Q Consensus 26 iVFvvGGiTy~E~~~i~~l~~~~~~~~iiiGst~i 60 (75)
.|+|+||..+-=...+..|.+. +.+|++-+.+-
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~--G~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAE--GARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4778888777666666666654 56766655443
Done!