RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8628
         (75 letters)



>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex,
           multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1
           PDB: 3puj_A 3c98_A
          Length = 594

 Score = 83.8 bits (206), Expect = 5e-21
 Identities = 40/70 (57%), Positives = 55/70 (78%)

Query: 5   ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
           ARYGHWHK++A  + ++ PRLI+FI+GGVS +E+RCAYEVT     WEV+IGS+HI+TP+
Sbjct: 517 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576

Query: 65  DFLNNLSNLS 74
             L+ L  L+
Sbjct: 577 KLLDTLKKLN 586


>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare
           proteins, binding protein, endocytosis-exocytosis
           complex; 3.05A {Mus musculus} PDB: 2pjx_A
          Length = 592

 Score = 80.3 bits (197), Expect = 9e-20
 Identities = 30/67 (44%), Positives = 46/67 (68%)

Query: 8   GHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFL 67
                +  +   KN  RLI+F+IGG+++SE+RCAYEV+   K+ EVIIGS+HI+TP   L
Sbjct: 515 QKPRTNYLELDRKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLL 574

Query: 68  NNLSNLS 74
           +++  L+
Sbjct: 575 DDIKMLN 581


>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical
           BUN endocytosis-exocytosis complex; 2.40A {Loligo
           pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
          Length = 591

 Score = 78.8 bits (193), Expect = 3e-19
 Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 5   ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTP 63
            RYGHWHKD+ Q   K+ PRLI+F++GG+S+SE+R AYEVT   K NWEVI+GS+HI+TP
Sbjct: 519 VRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTP 578

Query: 64  EDFLNNLSNLS 74
           E  L +L  +S
Sbjct: 579 EGLLRDLRKIS 589


>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT
           choanoflagellates; 2.80A {Monosiga brevicollis}
          Length = 650

 Score = 68.5 bits (166), Expect = 1e-15
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 20  KNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLSNLS 74
              P+L VFI G VS++EIRCAYEV+ +   +EV IG+ +I TP +F+  +S L 
Sbjct: 563 SAKPKLFVFINGTVSYNEIRCAYEVSQS-SGYEVYIGAHNIATPAEFVELVSLLD 616


>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin,
           endocytosis/exocytosis complex; 3.00A {Saccharomyces
           cerevisiae} SCOP: e.25.1.1
          Length = 671

 Score = 65.8 bits (159), Expect = 1e-14
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 3   HIARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTN--NVKNWEVIIGSSHI 60
            I R  H  K + Q    +  + +VF++GG ++ E +   E  +       +V+ GS+ I
Sbjct: 593 KITRGSHTRKPKRQ----SYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAI 648

Query: 61  MTPEDFLNNLSNLS 74
            TP +FLN +S L 
Sbjct: 649 TTPAEFLNEISRLG 662


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.061
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 17/83 (20%)

Query: 2   LHIARYGHWHKDR-AQQQVKNVPRLIVFIIGG----------VSFSEIRCAYEVTNNVKN 50
            +++R   + K R A  +++    +++  + G              +++C  +    +  
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKI-F 185

Query: 51  WEVIIGSSHIMTPEDFLNNLSNL 73
           W   +   +  +PE  L  L  L
Sbjct: 186 W---LNLKNCNSPETVLEMLQKL 205



 Score = 23.7 bits (50), Expect = 8.4
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 12  KDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPEDFLNNLS 71
           +D  ++ +   PR +  I    S  +    ++      NW+ +         E  LN L 
Sbjct: 316 QDLPREVLTTNPRRLSII--AESIRDGLATWD------NWKHVNCDKLTTIIESSLNVLE 367


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 0.74
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 27/84 (32%)

Query: 10   WHKDRA------------QQQVKNVPRLIVFIIGGVSFSEIRCAY-----EVTNNVKNW- 51
            W  +RA               V N P  +    GG     IR  Y     E   + K   
Sbjct: 1646 W--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703

Query: 52   -----EVIIGSSHIM--TPEDFLN 68
                 E+   S+     + +  L+
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLS 1727


>1s5d_A Cholera enterotoxin, A chain; heat-labIle enterotoxin, ADP ribose
           transfera toxins, transferase,toxin; HET: GAL; 1.75A
           {Vibrio cholerae} SCOP: d.166.1.1 PDB: 1s5c_A 1s5b_A*
           1s5e_A* 1s5f_A* 1lt3_A* 1lt4_A* 1xtc_A 2a5d_B* 2a5f_B*
           2a5g_B* 1lti_A* 1ltg_A 1htl_A 1lta_A* 1lts_A 1ltb_A
           1ltt_A* 1xtc_C
          Length = 240

 Score = 24.4 bits (52), Expect = 4.5
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 7   YGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVI 54
            G +     +Q+V          +GG+ +S+I   Y V   V + ++ 
Sbjct: 101 LGAYSPHPDEQEV--------SALGGIPYSQIYGWYRVHFGVLDEQLH 140


>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
           RNA-binding helicase, innate immunity, IFIH1, S
           genomics; 1.60A {Homo sapiens}
          Length = 216

 Score = 24.0 bits (52), Expect = 6.2
 Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 49  KNWEVIIGSSHI--MTPEDFLNNLSN 72
            ++  ++ S  I   T +   N+L N
Sbjct: 124 ISFPEVVKSCDIIISTAQILENSLLN 149


>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A
          {Arthrobacter globiformis} SCOP: d.96.1.4 d.96.1.4 PDB:
          2yzb_A* 2yzd_A* 2yze_A 1vax_A 1vay_A*
          Length = 302

 Score = 23.2 bits (50), Expect = 9.3
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 45 TNNVKNWEVIIGSSHIMTPEDFLNNLSN 72
          T+  KN           T E+FL  L  
Sbjct: 67 TDTQKNTVYAFARDGFATTEEFLLRLGK 94


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,226,706
Number of extensions: 58918
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 12
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.1 bits)