RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8628
         (75 letters)



>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 589

 Score = 91.3 bits (226), Expect = 4e-24
 Identities = 40/70 (57%), Positives = 55/70 (78%)

Query: 5   ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSHIMTPE 64
           ARYGHWHK++A  + ++ PRLI+FI+GGVS +E+RCAYEVT     WEV+IGS+HI+TP+
Sbjct: 514 ARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 573

Query: 65  DFLNNLSNLS 74
             L+ L  L+
Sbjct: 574 KLLDTLKKLN 583


>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
           (Loligo pealei) [TaxId: 6621]}
          Length = 590

 Score = 90.1 bits (223), Expect = 1e-23
 Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 5   ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTNNVK-NWEVIIGSSHIMTP 63
            RYGHWHKD+ Q   K+ PRLI+F++GG+S+SE+R AYEVT   K NWEVI+GS+HI+TP
Sbjct: 518 VRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTP 577

Query: 64  EDFLNNLSNLS 74
           E  L +L  +S
Sbjct: 578 EGLLRDLRKIS 588


>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 82.8 bits (204), Expect = 4e-21
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 5   ARYGHWHKDRAQQQVKNVPRLIVFIIGGVSFSEIRCAYEVTN--NVKNWEVIIGSSHIMT 62
            R  H  K + Q    +  + +VF++GG ++ E +   E  +       +V+ GS+ I T
Sbjct: 581 TRGSHTRKPKRQ----SYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITT 636

Query: 63  PEDFLNNLSNLS 74
           P +FLN +S L 
Sbjct: 637 PAEFLNEISRLG 648


>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
           [TaxId: 11103]}
          Length = 530

 Score = 24.8 bits (54), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 23  PRLIVFIIGGVSFSEIRCAYEVTNNVKNWEVIIGSSH 59
            RLIVF   GV   E    Y+V + +   +V++GSS+
Sbjct: 157 ARLIVFPDLGVRVCEKMALYDVVSTL--PQVVMGSSY 191


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 309,985
Number of extensions: 11735
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 6
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)