BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8629
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 172/395 (43%), Gaps = 62/395 (15%)
Query: 104 YEPGEIRTKVPLDRETRSSYSLVAIPLSG------ENVRVVVRVIDENDNAPTFPSPFMS 157
+E G + PLDRE Y L + +S E + + + VID+NDN P F
Sbjct: 210 WETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR 269
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIVSGNTNNAF-RLSSHREKDGVLYL 213
E + +A D D I + Y+I+ + L + + GV+ L
Sbjct: 270 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISL 329
Query: 214 DLQINGVLDRETIPEYSLVIEA--LDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFAT 271
I LDRE PEY+L ++A L+G + G I+ +T D NDN PIF+ Y A
Sbjct: 330 ---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT--DANDNAPIFDPKTYTAL 384
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVNKA 327
VPEN +G + ++ TD D + ++ + + ++ G FNI +S G++ K
Sbjct: 385 VPENE-IGFEVQRLSVTDLDMPGTPAWQ-AVYKIRVNEGGFFNITTDPESNQGILTTAKG 442
Query: 328 LDFETKEVHDL------------------------------VPRFAVEISSFD--EIAEP 355
LDFE ++ + L P F +S D E
Sbjct: 443 LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSR 502
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
G + + A D D+ ++Y + +D W ++ +G++T N+D E++ V
Sbjct: 503 GEKIISLVAQDPDKQQIQKLSYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNN 559
Query: 416 T----VIATDNGVPALSSSATVLVTIHDVNDNEPI 446
T ++ TD+GV + + T+++ + DVNDN P+
Sbjct: 560 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 594
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 38/202 (18%)
Query: 297 EVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALDFETKEVH------------------ 336
+V YSI + +D G+F I+ ++G + V + LD E + +
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 247
Query: 337 ----------DLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
D P+F ++ S E +PGT V +SA D+D+ I N V++YS+ +
Sbjct: 248 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 307
Query: 382 NTDDHP--SWFQIDSKSGLITM-KSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ P + F I+ ++G+I++ + +D E P LTV ATD LS ++ I
Sbjct: 308 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 367
Query: 439 DVNDNEPIFDQSFYNVTIPENK 460
D NDN PIFD Y +PEN+
Sbjct: 368 DANDNAPIFDPKTYTALVPENE 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 131/300 (43%), Gaps = 54/300 (18%)
Query: 221 LDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGT 280
LDRE +Y L A+ P+ M + + + D NDN+P F Q + +V E GT
Sbjct: 221 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 280
Query: 281 SIFQVFATDADA---GSNGEVEYSINRRQSDKD--GLFNIDSKSGLI-FVNKALDFETKE 334
+ V ATD D NG + YSI ++ ++ LF I+ ++G+I + LD E
Sbjct: 281 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK-- 338
Query: 335 VHDLVPRFAVEISSFD----EIAEPGTSVFQISAFDQDEGINSVITYS--LREN------ 382
P + + + + D ++ G ++ QI+ + + I TY+ + EN
Sbjct: 339 ----FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEV 394
Query: 383 -----TD----DHPSW-------------FQI----DSKSGLITMKSNVDCETDP--VPK 414
TD P+W F I +S G++T +D E V +
Sbjct: 395 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQ 454
Query: 415 LTVI-ATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
+TV A VP +S+ATV VT+ DVN+ P F + V + E+ +G I+ + D
Sbjct: 455 ITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 513
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 172/395 (43%), Gaps = 62/395 (15%)
Query: 104 YEPGEIRTKVPLDRETRSSYSLVAIPLSG------ENVRVVVRVIDENDNAPTFPSPFMS 157
+E G + PLDRE Y L + +S E + + + VID+NDN P F
Sbjct: 61 WETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR 120
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIVSGNTNNAF-RLSSHREKDGVLYL 213
E + +A D D I + Y+I+ + L + + GV+ L
Sbjct: 121 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISL 180
Query: 214 DLQINGVLDRETIPEYSLVIEA--LDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFAT 271
I LDRE PEY+L ++A L+G + G I+ +T D NDN PIF+ Y A
Sbjct: 181 ---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT--DANDNAPIFDPKTYTAL 235
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVNKA 327
VPEN +G + ++ TD D + ++ + + ++ G FNI +S G++ K
Sbjct: 236 VPENE-IGFEVQRLSVTDLDMPGTPAWQ-AVYKIRVNEGGFFNITTDPESNQGILTTAKG 293
Query: 328 LDFETKEVHDL------------------------------VPRFAVEISSFD--EIAEP 355
LDFE ++ + L P F +S D E
Sbjct: 294 LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSR 353
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
G + + A D D+ ++Y + +D W ++ +G++T N+D E++ V
Sbjct: 354 GEKIISLVAQDPDKQQIQKLSYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNN 410
Query: 416 T----VIATDNGVPALSSSATVLVTIHDVNDNEPI 446
T ++ TD+GV + + T+++ + DVNDN P+
Sbjct: 411 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 445
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 38/202 (18%)
Query: 297 EVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALDFETKEVH------------------ 336
+V YSI + +D G+F I+ ++G + V + LD E + +
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 98
Query: 337 ----------DLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
D P+F ++ S E +PGT V +SA D+D+ I N V++YS+ +
Sbjct: 99 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 158
Query: 382 NTDDHP--SWFQIDSKSGLITM-KSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ P + F I+ ++G+I++ + +D E P LTV ATD LS ++ I
Sbjct: 159 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 218
Query: 439 DVNDNEPIFDQSFYNVTIPENK 460
D NDN PIFD Y +PEN+
Sbjct: 219 DANDNAPIFDPKTYTALVPENE 240
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 131/300 (43%), Gaps = 54/300 (18%)
Query: 221 LDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGT 280
LDRE +Y L A+ P+ M + + + D NDN+P F Q + +V E GT
Sbjct: 72 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 131
Query: 281 SIFQVFATDADA---GSNGEVEYSINRRQSDKD--GLFNIDSKSGLI-FVNKALDFETKE 334
+ V ATD D NG + YSI ++ ++ LF I+ ++G+I + LD E
Sbjct: 132 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK-- 189
Query: 335 VHDLVPRFAVEISSFD----EIAEPGTSVFQISAFDQDEGINSVITYS--LREN------ 382
P + + + + D ++ G ++ QI+ + + I TY+ + EN
Sbjct: 190 ----FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEV 245
Query: 383 -----TD----DHPSW-------------FQI----DSKSGLITMKSNVDCETDP--VPK 414
TD P+W F I +S G++T +D E V +
Sbjct: 246 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQ 305
Query: 415 LTVI-ATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
+TV A VP +S+ATV VT+ DVN+ P F + V + E+ +G I+ + D
Sbjct: 306 ITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 364
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 178/425 (41%), Gaps = 68/425 (16%)
Query: 107 GEIRTKVPLDRETRSSYSLVA--IPLSGENVR----VVVRVIDENDNAPTFPSPFMSIEF 160
G++ PLDRE + + L A + ++G V +V+ VID NDN P F +
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 161 PENT-PRDVKRTLNAAKDRDLGIYNTQ-RYNIVSG--NTNNAFRLSSHREKDGVLYLDLQ 216
PE + P T+ A D N RY I+S +T + + + E ++
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII----T 173
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRG---SMIVNVTIQDVNDNQPIFNQSRYFATVP 273
+ LDRE + +Y+L+I+A D P G + +T+ DVNDN P F ++ VP
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVP 233
Query: 274 ENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVNKALD 329
EN V + + TD D + D G F I +S GL+ V K +D
Sbjct: 234 ENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPID 292
Query: 330 FETKEVHDLV---------------------------------PRFA--VEISSFDEIAE 354
FET + L P FA +I +E
Sbjct: 293 FETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQEEGLH 352
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVP- 413
GT + ++A D D + I Y+ D +W +ID +G IT + +D E+ V
Sbjct: 353 AGTMLTTLTAQDPDRYMQQNIRYT---KLSDPANWLKIDPVNGQITTIAVLDRESPNVKN 409
Query: 414 ---KLTVIATDNGVPALSSSATVLVTIHDVNDNEP-IFDQSFYNVTIPENKPKGSCILKS 469
T +A+DNG+P +S + T+ + + D+NDN P + Q PE S + +
Sbjct: 410 NIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPE---PNSINITA 466
Query: 470 IFYDI 474
+ YDI
Sbjct: 467 LDYDI 471
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 147/344 (42%), Gaps = 73/344 (21%)
Query: 158 IEFPENT----PRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYL 213
I PEN+ P+++ R + + +D++L + RY++ + + G+ +
Sbjct: 7 INLPENSRGPFPQELVR-IRSDRDKNLSL----RYSVTGP--------GADQPPTGIFII 53
Query: 214 D-----LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRY 268
+ L + LDRE I + L A+D + + + + + D+NDN+P F +
Sbjct: 54 NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113
Query: 269 FATVPENATVGTSIFQVFATDAD--AGSNGEVEYSINRR--QSDKDGLFNIDSKSG-LIF 323
+VPE + GT + V A DAD NG + Y I + + +F I++++G +I
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIIT 173
Query: 324 VNKALDFETKEVHDLV-------------------------------PRFAVEISSFDEI 352
V LD E + + L+ P F ++ + E+
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTA-MTFYGEV 232
Query: 353 AEPGTSVF--QISAFDQDEGINSVITYSLRENTDDHPSWFQI----DSKSGLITMKSNVD 406
E V ++ D+D+ + R + D F I +S GL+T+ +D
Sbjct: 233 PENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPID 292
Query: 407 CETDPVPKLTVIATDNGVPAL-------SSSATVLVTIHDVNDN 443
ET+ + LTV A +N VP S+ATV VT+ DVN+N
Sbjct: 293 FETNRMFVLTV-AAENQVPLAKGIQHPPQSTATVSVTVIDVNEN 335
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 40/211 (18%)
Query: 290 ADAGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALDFE---------------- 331
+D N + YS+ +D+ G+F I+ SG + V K LD E
Sbjct: 26 SDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING 85
Query: 332 ------------TKEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDE--GINSVI 375
+++D P F ++ S E ++PGT V ++A D D+ +N ++
Sbjct: 86 NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML 145
Query: 376 TYSLRENTDDHPS--WFQIDSKSG-LITMKSNVDCETDPVPKLTVIATD---NGVPALSS 429
Y + PS F I++++G +IT+ + +D E L + ATD N LS+
Sbjct: 146 RYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSN 205
Query: 430 SATVLVTIHDVNDNEPIFDQSFYNVTIPENK 460
+AT ++T+ DVNDN P F + +PEN+
Sbjct: 206 TATAVITVTDVNDNPPEFTAMTFYGEVPENR 236
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 368 DEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVP 425
D N + YS+ D P F I+ SG +++ +D E L A D
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN 86
Query: 426 ALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
+ + +++ + D+NDN P F +N ++PE G+ ++
Sbjct: 87 QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVM 128
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 172/406 (42%), Gaps = 60/406 (14%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGNTNNAFRLSSHREKD-GVLYLDLQINGVLDRETIPEYSLVIEALDGGS 240
YN Y IVS + + +D GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV---LTSGLDRESYPTYTLVVQAADLQG 198
Query: 241 PPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEY 300
L + +T++D+NDN P+FN S Y VPEN V I + TD DA N
Sbjct: 199 EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDA-PNTPAWK 256
Query: 301 SINRRQSDKDGLFNI----DSKSGLIFVNKALDFETKEVH--------------DLVPRF 342
++ +D D F + + G++ K LDFE K+ + LVP
Sbjct: 257 AVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPST 316
Query: 343 AVEISSFDEIAEP------------------GTSVFQISAFDQDEGINSVITYSLRENTD 384
A ++ E G + +A + D ++ ITY + +T
Sbjct: 317 ATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDT- 375
Query: 385 DHPSWFQIDSKSGLITMKSNVDCE-TDPVPKLT----VIATDNGVP 425
+W +I+ ++G I ++ +D E + V T +IATD+G P
Sbjct: 376 --ANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSP 419
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 38/202 (18%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGIN---SVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ +N + I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 DVNDNEPIFDQSFYNVTIPENK 460
D+NDN P+F+ S Y +PEN+
Sbjct: 213 DINDNAPVFNPSTYQGQVPENE 234
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 117/248 (47%), Gaps = 26/248 (10%)
Query: 107 GEIRTKVPLDRETRSSYSLVAIPLSGENVR-------VVVRVIDENDNAPTFPSPFMSIE 159
G+I LDRE ++ Y+L A + E + +++V D NDNAP F +
Sbjct: 55 GDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHAT 114
Query: 160 FPENTPRDVKRTLNAAKDRDLGIYNTQR---YNIVSGNTNNAFRLSSHREKDGVLYLDLQ 216
PE + T A D D +Y Y+I+ G + + K + +D
Sbjct: 115 VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMD-- 172
Query: 217 INGVLDRETIPEYSLVIEALD--GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
RE EY +VI+A D G S L G+ + VT+ DVNDN P F QS Y +VPE
Sbjct: 173 ------REAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPE 226
Query: 275 NATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS----KSGLIFVNKALDF 330
+ +GT+I +V A D D G N + Y I D LF I S + G+I + K LDF
Sbjct: 227 DVVLGTAIGRVKANDQDIGENAQSSYDI--IDGDGTALFEITSDAQAQDGVIRLRKPLDF 284
Query: 331 ETKEVHDL 338
ETK+ + L
Sbjct: 285 ETKKSYTL 292
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 39/238 (16%)
Query: 221 LDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVG 279
LDRE EY+L +A+D + PL + +QD+NDN P F Y ATVPE + +G
Sbjct: 63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122
Query: 280 TSIFQVFATDAD---AGSNGEVEYSINRRQSD----------KDGLFNID--SKSGLIFV 324
TS+ V ATDAD G++ ++ YSI Q K L N+D +K + V
Sbjct: 123 TSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVV 182
Query: 325 NKALDF---------------ETKEVHDLVPRFAVEISSFD--EIAEPGTSVFQISAFDQ 367
+A D +V+D P+FA + F E GT++ ++ A DQ
Sbjct: 183 IQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQ 242
Query: 368 DEGINSVITYSLRENTDDHPSWFQIDS----KSGLITMKSNVDCETDPVPKLTVIATD 421
D G N+ +Y + + D + F+I S + G+I ++ +D ET L V A +
Sbjct: 243 DIGENAQSSYDIIDG--DGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAAN 298
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 28/199 (14%)
Query: 292 AGSNGEVEYSINRRQSDKDGLFNID--SKSGLIFVNKALDFET--------------KEV 335
+G + IN D + +D K+ +A+DFET +++
Sbjct: 40 SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDI 99
Query: 336 HDLVPRF--AVEISSFDEIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWF 390
+D P F ++ E++ GTSV ++A D D+ G ++ + YS+ E +F
Sbjct: 100 NDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ----PYF 155
Query: 391 QIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNG--VPALSSSATVLVTIHDVNDNEPIF 447
I+ ++ +I T N+D E + + A D G LS + T+ VT+ DVNDN P F
Sbjct: 156 SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKF 215
Query: 448 DQSFYNVTIPENKPKGSCI 466
QS Y+ ++PE+ G+ I
Sbjct: 216 AQSLYHFSVPEDVVLGTAI 234
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL 221
E+TP T A+D D N VSG A R + GV++L L
Sbjct: 22 EDTPVGSSVTQLLARDMD----NDPLVFGVSGE--EASRFFAVEPDTGVVWL----RQPL 71
Query: 222 DRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTS 281
DRET E+++ D R VN+ + DVNDN P F+ Y +PEN VGT
Sbjct: 72 DRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 282 IFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL 338
IF V ATD D G+ G V YS F IDS G++ V + LD+E + + L
Sbjct: 129 IFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDSARGIVTVIQELDYEVTQAYQL 181
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 42/210 (20%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
F + +F T + E+ VG+S+ Q+ A D D N + + ++ ++ + F ++ +
Sbjct: 8 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFAVEPDT 62
Query: 320 GLIFVNKALDFETK-------------------------EVHDLVPRFAVEISS--FDEI 352
G++++ + LD ETK +V+D P F + S E
Sbjct: 63 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 122
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
GT +F ++A D D G + YS + PS +F IDS G++T+ +D E
Sbjct: 123 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 177
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDV 440
+LTV ATD + LS+ A + + I D+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 93 LSGENVRVVSFYEP--GEIRTKVPLDRETRSSYSLVAIPLSGENV---RVVVRVIDENDN 147
+SGE EP G + + PLDRET+S +++ + V +V ++V D NDN
Sbjct: 47 VSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDN 106
Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREK 207
APTF + S+ PENTP + A D DLG + Y+ + F + S R
Sbjct: 107 APTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAIDSAR-- 162
Query: 208 DGVLYLDLQINGVLDRETIPEYSLVIEALD 237
G++ + + LD E Y L + A D
Sbjct: 163 -GIVTVIQE----LDYEVTQAYQLTVNATD 187
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
G+SV Q+ A D D N + + + + ++ +F ++ +G++ ++ +D ET +
Sbjct: 27 GSSVTQLLARDMD---NDPLVFGV--SGEEASRFFAVEPDTGVVWLRQPLDRETKS--EF 79
Query: 416 TV---IATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
TV ++ GV + V + + DVNDN P F Y+V IPEN P G+ I
Sbjct: 80 TVEFSVSDHQGV----ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF 130
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 198 AFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVN 257
A R + GV++L LDRET E+++ D R VN+ + DVN
Sbjct: 52 ASRFFAVEPDTGVVWL----RQPLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVN 104
Query: 258 DNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS 317
DN P F+ Y +PEN VGT IF V ATD D G+ G V YS F IDS
Sbjct: 105 DNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDS 160
Query: 318 KSGLIFVNKALDFETKEVHDL 338
G++ V + LD+E + + L
Sbjct: 161 ARGIVTVIQELDYEVTQAYQL 181
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 42/210 (20%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
F + +F T + E+ VG+S+ Q+ A D D N + + + ++ + F ++ +
Sbjct: 8 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASR--FFAVEPDT 62
Query: 320 GLIFVNKALDFETK-------------------------EVHDLVPRFAVEISS--FDEI 352
G++++ + LD ETK +V+D P F + S E
Sbjct: 63 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 122
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
GT +F ++A D D G + YS + PS +F IDS G++T+ +D E
Sbjct: 123 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 177
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDV 440
+LTV ATD + LS+ A + + I D+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 87/216 (40%), Gaps = 46/216 (21%)
Query: 22 LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
L ISE PVG+ V + D L+ VPG ++E +TG + + PLDRE
Sbjct: 18 LLISEDTPVGSSVTQL---LARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 82 TRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
T+S ++ V +S G I KV ++V
Sbjct: 75 TKSEFT-VEFSVSDHQ---------GVITRKVN------------------------IQV 100
Query: 142 IDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRL 201
D NDNAPTF + S+ PENTP + A D DLG + Y+ + F +
Sbjct: 101 GDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAI 158
Query: 202 SSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
S R G++ + + LD E Y L + A D
Sbjct: 159 DSAR---GIVTVIQE----LDYEVTQAYQLTVNATD 187
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
G+SV Q+ A D D N + + + ++ +F ++ +G++ ++ +D ET +
Sbjct: 27 GSSVTQLLARDMD---NDPLVFGVP--GEEASRFFAVEPDTGVVWLRQPLDRETKS--EF 79
Query: 416 TV---IATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
TV ++ GV + V + + DVNDN P F Y+V IPEN P G+ I
Sbjct: 80 TVEFSVSDHQGV----ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF 130
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL 221
E+TP T A+D D N VSG A R + GV++L L
Sbjct: 21 EDTPVGSSVTQLLARDMD----NDPLVFGVSGE--EASRFFAVEPDTGVVWL----RQPL 70
Query: 222 DRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTS 281
DRET E+++ D R VN+ + DVNDN P F+ Y +PEN VGT
Sbjct: 71 DRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 127
Query: 282 IFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL 338
IF V ATD D G+ G V YS F IDS G++ V + LD+E + + L
Sbjct: 128 IFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDSARGIVTVIQELDYEVTQAYQL 180
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 42/212 (19%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
F + +F T + E+ VG+S+ Q+ A D D N + + ++ ++ + F ++ +
Sbjct: 7 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFAVEPDT 61
Query: 320 GLIFVNKALDFETK-------------------------EVHDLVPRFAVEISS--FDEI 352
G++++ + LD ETK +V+D P F + S E
Sbjct: 62 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 121
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
GT +F ++A D D G + YS + PS +F IDS G++T+ +D E
Sbjct: 122 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 176
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDVND 442
+LTV ATD + LS+ A + + I D+ D
Sbjct: 177 AYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 15/172 (8%)
Query: 93 LSGENVRVVSFYEP--GEIRTKVPLDRETRSSYSLVAIPLSGENV---RVVVRVIDENDN 147
+SGE EP G + + PLDRET+S +++ + V +V ++V D NDN
Sbjct: 46 VSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDN 105
Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREK 207
APTF + S+ PENTP + A D DLG + Y+ + F + S R
Sbjct: 106 APTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAIDSAR-- 161
Query: 208 DGVLYLDLQINGVLDRETIPEYSLVIEALDG-GSPPLRGSMIVNVTIQDVND 258
G++ + + LD E Y L + A D + PL + + I D+ D
Sbjct: 162 -GIVTVIQE----LDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
G+SV Q+ A D D N + + + + ++ +F ++ +G++ ++ +D ET +
Sbjct: 26 GSSVTQLLARDMD---NDPLVFGV--SGEEASRFFAVEPDTGVVWLRQPLDRETKS--EF 78
Query: 416 TV---IATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
TV ++ GV + V + + DVNDN P F Y+V IPEN P G+ I
Sbjct: 79 TVEFSVSDHQGV----ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF 129
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL 221
E+TP T A+D D N VSG A R + GV++L L
Sbjct: 22 EDTPVGSSVTQLLARDMD----NDPLVFGVSGE--EASRFFAVEPDTGVVWL----RQPL 71
Query: 222 DRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTS 281
DRET E+++ D R VN+ + VNDN P F+ Y +PEN VGT
Sbjct: 72 DRETKSEFTVEFSVSDHQGVITRK---VNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 282 IFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL 338
IF V ATD D G+ G V YS F IDS G++ V + LD+E + + L
Sbjct: 129 IFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDSARGIVTVIQELDYEVTQAYQL 181
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 42/210 (20%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
F + +F T + E+ VG+S+ Q+ A D D N + + ++ ++ + F ++ +
Sbjct: 8 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFAVEPDT 62
Query: 320 GLIFVNKALDFETKE-------------------------VHDLVPRFAVEISS--FDEI 352
G++++ + LD ETK V+D P F + S E
Sbjct: 63 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPEN 122
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
GT +F ++A D D G + YS + PS +F IDS G++T+ +D E
Sbjct: 123 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 177
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDV 440
+LTV ATD + LS+ A + + I D+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 93 LSGENVRVVSFYEP--GEIRTKVPLDRETRSSYSLVAIPLSGENV---RVVVRVIDENDN 147
+SGE EP G + + PLDRET+S +++ + V +V ++V NDN
Sbjct: 47 VSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGGVNDN 106
Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREK 207
APTF + S+ PENTP + A D DLG + Y+ + F + S R
Sbjct: 107 APTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAIDSAR-- 162
Query: 208 DGVLYLDLQINGVLDRETIPEYSLVIEALD 237
G++ + + LD E Y L + A D
Sbjct: 163 -GIVTVIQE----LDYEVTQAYQLTVNATD 187
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
G+SV Q+ A D D N + + + + ++ +F ++ +G++ ++ +D ET +
Sbjct: 27 GSSVTQLLARDMD---NDPLVFGV--SGEEASRFFAVEPDTGVVWLRQPLDRETKS--EF 79
Query: 416 TV---IATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
TV ++ GV + V + + VNDN P F Y+V IPEN P G+ I
Sbjct: 80 TVEFSVSDHQGV----ITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIF 130
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 78/134 (58%), Gaps = 15/134 (11%)
Query: 214 DLQINGVLDRETIPEYSLVIEALD--GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFAT 271
D+Q LDRE P Y L +A++ G P S + + I D+NDN+PIF + Y AT
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFI-IKIHDINDNEPIFTKDVYTAT 114
Query: 272 VPENATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKDGLFNIDSKSGLI---FVN 325
VPE A VGT + QV ATDAD G++ +V YSI + Q F+++S++G+I +N
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP----YFSVESETGIIKTALLN 170
Query: 326 KALDFETKEVHDLV 339
+D E +E + +V
Sbjct: 171 --MDRENREQYQVV 182
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 366 DQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATD--NG 423
DQD G S + Y L + D F I+ +G I +D E PV L A + G
Sbjct: 27 DQDRGDGS-LKYIL--SGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTG 83
Query: 424 VPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
P + + ++ IHD+NDNEPIF + Y T+PE G+ +++
Sbjct: 84 RP-VEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQ 127
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 43/217 (19%)
Query: 44 DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSF 103
D G L + G I +NTG+I+ LDRE + Y L A ++
Sbjct: 29 DRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNR-------- 80
Query: 104 YEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPEN 163
RT P++ E+ ++++ D NDN P F + PE
Sbjct: 81 ------RTGRPVEPES----------------EFIIKIHDINDNEPIFTKDVYTATVPEM 118
Query: 164 TPRD---VKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGV 220
V+ T A D G Y+I+ G F + S + G++ L +N
Sbjct: 119 ADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVES---ETGIIKTAL-LN-- 170
Query: 221 LDRETIPEYSLVIEALDGGSP--PLRGSMIVNVTIQD 255
+DRE +Y +VI+A D G L G+ VN+T+ D
Sbjct: 171 MDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQS-DKDGLFNI 315
NDN+P+F + + +PENA VGTS+ Q+ ATDAD GSN E+ Y + + LF +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 316 DSKSGLIFVNKALDFETKEVHDL 338
++ +GLI V ++LD E +H +
Sbjct: 68 NNTTGLITVQRSLDREETAIHKV 90
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTD-DHPSWFQIDSKSGLITMKSNVDCET 409
E A GTSV Q+ A D D G N+ I Y F +++ +GLIT++ ++D E
Sbjct: 25 ENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREE 84
Query: 410 DPVPKLTVIATD-NGVPALSSSATVLVTIHDVN 441
+ K+TV+A+D + PA ATV + + DVN
Sbjct: 85 TAIHKVTVLASDGSSTPA---RATVTINVTDVN 114
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
NDN P F + + PEN P A D D+G RY + RL +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVN 257
G++ + LDRE + + + A DG S P R ++ +NVT DVN
Sbjct: 68 NNTTGLITVQRS----LDREETAIHKVTVLASDGSSTPARATVTINVT--DVN 114
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILK 468
NDN P+F + V IPEN P G+ +++
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQ 35
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 158 IEFPENT----PRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYL 213
I PEN PRDV + +++ DR G V + FR++ +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDS--DRPEGSKFRLTGKGVDQDPKGTFRINENTGS------ 59
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
+ + LDRETI Y L +E D L G + + V + D NDN+PIF + Y V
Sbjct: 60 -VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVM 118
Query: 274 ENATVGTSIFQVFATDAD--AGSNGEVEYSINRRQSDKDG--LFNIDSKSGLI--FVNKA 327
E + GT++ ++ A DAD A N + Y+I ++ DK +F ID + G I V+ A
Sbjct: 119 EGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPA 178
Query: 328 -LDFETKE 334
LD ET E
Sbjct: 179 LLDRETLE 186
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 385 DHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE 444
D F+I+ +G +++ +D ET +L V TD L + V + D NDN
Sbjct: 46 DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNR 105
Query: 445 PIFDQSFYNVTIPENKPKGSCILKSIFYD 473
PIF + Y + E P G+ +++ +D
Sbjct: 106 PIFREGPYIGHVMEGSPTGTTVMRMTAFD 134
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 41/174 (23%)
Query: 307 SDKDGLFNIDSKSGLIFVNKALDFETKEVHDL---------------VPRFAVEISSFD- 350
D G F I+ +G + V + LD ET + L VP + I D
Sbjct: 45 QDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDN 104
Query: 351 --------------EIAEPGTSVFQISAFDQDEGI--NSVITYSLRENTDDHPS--WFQI 392
E + GT+V +++AFD D+ N+++ Y++R+ T D PS F I
Sbjct: 105 RPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYI 164
Query: 393 DSKSG-LITMKSN--VDCETDPVPKLTVIATDNGVP----ALSSSATVLVTIHD 439
D + G ++T+ S +D ET PK +I + L+ +AT + I D
Sbjct: 165 DPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 107 GEIRTKVPLDRETRSSYSLV--AIPLSGEN----VRVVVRVIDENDNAPTF-PSPFMSIE 159
G + LDRET ++Y L SG+ V + V VID+NDN P F P++
Sbjct: 58 GSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIG-H 116
Query: 160 FPENTPRDVKRTLNAAKDRDLGIYNTQ--RYNIVSGNTNNAFRLSSHREKDGVLYLDLQI 217
E +P A D D + RYNI + + + + Y+D +
Sbjct: 117 VMEGSPTGTTVMRMTAFDADDPATDNALLRYNI--------RQQTPDKPSPNMFYIDPEK 168
Query: 218 N--------GVLDRETI--PEYSLVIEALD--GGSPPLRGSMIVNVTIQD 255
+LDRET+ P+Y L+IEA D G L G+ + I D
Sbjct: 169 GDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 17/162 (10%)
Query: 189 NIVSGNTNNAFRLSSHREKDGVLYL------DLQINGVLDRETIPEYSLVIEALDGGS-P 241
+I SG+ N + LS E G +++ ++ LDRE +Y+L+ +A+D +
Sbjct: 28 DIDSGDGNIKYILSG--EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNR 85
Query: 242 PLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDAD---AGSNGEV 298
PL V +QD+NDN P F Y A VPE + VGTS+ QV A+DAD G++ ++
Sbjct: 86 PLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKL 145
Query: 299 EYSINRRQSDKDGLFNIDSKSGLIFVN-KALDFETKEVHDLV 339
YSI Q F++++++G+I +D E KE + +V
Sbjct: 146 VYSILEGQP----YFSVEAQTGIIRTALPNMDREAKEEYHVV 183
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 71/177 (40%), Gaps = 22/177 (12%)
Query: 93 LSGENVRVVSFYE--PGEIRTKVPLDRETRSSYSLVAIPLSGENVR-------VVVRVID 143
LSGE + + G I LDRE R+ Y+L+A + + R +V+V D
Sbjct: 40 LSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQD 99
Query: 144 ENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQR---YNIVSGNTNNAFR 200
NDN P F PE + A D D Y Y+I+ G
Sbjct: 100 INDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP----- 154
Query: 201 LSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSP--PLRGSMIVNVTIQD 255
S + G++ L +DRE EY +VI+A D G L G+ V +T+ D
Sbjct: 155 YFSVEAQTGIIRTALP---NMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 44/191 (23%)
Query: 286 FATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV------ 339
+D D+G +G ++Y ++ + +F ID KSG I K LD E + + L+
Sbjct: 25 LHSDIDSG-DGNIKYILSGEGAGT--IFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR 81
Query: 340 -----------------------PRFAVEI--SSFDEIAEPGTSVFQISAFDQDE---GI 371
P F EI ++ E + GTSV Q++A D D+ G
Sbjct: 82 DTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGN 141
Query: 372 NSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNG--VPALS 428
++ + YS+ E +F +++++G+I T N+D E + + A D G + LS
Sbjct: 142 SAKLVYSILEGQ----PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLS 197
Query: 429 SSATVLVTIHD 439
+ V +T+ D
Sbjct: 198 GTTKVTITLTD 208
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 390 FQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGV-PALSSSATVLVTIHDVNDNEPIFD 448
F ID KSG I +D E L A D L + +V + D+NDN P F
Sbjct: 49 FVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFL 108
Query: 449 QSFYNVTIPENKPKGSCILK 468
Y+ +PE G+ +++
Sbjct: 109 HEIYHANVPERSNVGTSVIQ 128
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 143/353 (40%), Gaps = 81/353 (22%)
Query: 133 ENVRVVVRVIDENDNAPTF---PSPFMSI---EFPENTPRDVKRTLNAAKDRDLGIYNTQ 186
+N RV++ V D ND P F P P ++ P NTP TL A RD +
Sbjct: 93 DNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP---VFTLQA---RDPDTDHNI 146
Query: 187 RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG-------- 238
Y IV T F + E+ GV+ + G + EY L ++A D
Sbjct: 147 HYFIVRDRTGGRFEVD---ERSGVV----RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 199
Query: 239 --GSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNG 296
+P R S++ P F Y A +PEN + I + A + ++
Sbjct: 200 FQSTPEERLSIVGG-------KRAPQFYMPSYEAEIPENQKKDSDIISI---KAKSFADR 249
Query: 297 EVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFE------------------------- 331
E+ Y++ + Q G FNI SG++ + K LDFE
Sbjct: 250 EIRYTL-KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSV 308
Query: 332 -----TKEVHDLVPRFAV---EISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENT 383
+V+D P+F + + + DE GTS+ ++ A D D G N+ I Y + +
Sbjct: 309 DLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV---S 365
Query: 384 DDHPSWFQIDSKSGLITMKSNVDCE-TDPVPKLTVIATDNGVPALSSSATVLV 435
DDH F +DS +G+I +D + + + V A D G P S ATV V
Sbjct: 366 DDH---FAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 42/256 (16%)
Query: 249 VNVTIQDVNDNQPIF-NQSRYF-ATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQ 306
V + ++DVND P F N+ A V NA T +F + A D D N + Y I R +
Sbjct: 97 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR 154
Query: 307 SDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRF-----AVEISSFDEIAEPGTSV-- 359
+ G F +D +SG++ F+ + L + V+ F E S+
Sbjct: 155 TG--GRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG 212
Query: 360 ------FQISAFD--------QDEGINSV---------ITYSLRENTDDHPSWFQIDSKS 396
F + +++ +D I S+ I Y+L+ + F I S
Sbjct: 213 GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGT-FNIGPTS 271
Query: 397 GLITMKSNVDCETDPVPK---LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYN 453
G++ + +D E P L V AT++ S+S + + + DVNDN P F+ Y
Sbjct: 272 GIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQ 330
Query: 454 V-TIPENKPKGSCILK 468
+ E+ P G+ IL+
Sbjct: 331 AHNVDEDIPLGTSILR 346
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 340 PRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLI 399
P +E + D E G SVFQ+ E T+ +R DD+P W +++ +G +
Sbjct: 10 PTKRIEFTEADGDTE-GKSVFQLEKETDKE------TFKIR---DDNP-WVTVET-NGAV 57
Query: 400 TMKSNVDCET---DPVPKLTVIATDNGVPA---LSSSATVLVTIHDVNDNEPIF 447
+K D E + VI T+ G A + + V++ + DVND P F
Sbjct: 58 RVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF 111
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 14/206 (6%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 24 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 83
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 84 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 143
Query: 183 YNTQ-RYNIVSGNTNNAFRLSSHREKD-GVLYLDLQINGVLDRETIPEYSLVIEALDGGS 240
YN Y IVS + + +D GV+ + + LDRE+ P Y+LV++A D
Sbjct: 144 YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV---LTSGLDRESYPTYTLVVQAADLQG 200
Query: 241 PPLRGSMIVNVTIQDVNDNQPIFNQS 266
L + +T++D+NDN P+FN S
Sbjct: 201 EGLSTTAKAVITVKDINDNAPVFNPS 226
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 38/192 (19%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGIN---SVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ +N + I Y++
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 214
Query: 439 DVNDNEPIFDQS 450
D+NDN P+F+ S
Sbjct: 215 DINDNAPVFNPS 226
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 122 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 181
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 182 DRESYPTYTLVVQAA 196
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 38 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 97
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 131
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFVNKA-L 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V+ + L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ +D LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISVD---TSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLITM-KSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I++ S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 336 HDLVPRFAVEISSFD--EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQID 393
+D PRF + D E + PGT + Q+ A D D G+N I Y T+ ++D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 394 SKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEP 445
SG +++ +D E + TV+A D G P + ATV++ I D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNID 316
NDN P F +S Y A + EN+ GT I Q+ A D D G NG++EY L +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 317 SKSGLIFVNKALDFETKEVHDLVPRFAV 344
SG + V +D E EV+ L RF V
Sbjct: 68 ETSGWLSVLHRIDRE--EVNQL--RFTV 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
NDN+P F + EN+ A D D+G+ N Q + T + RL
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGV-NGQIEYVFGAATESVRRLLRL 66
Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQP 261
E G L + +I DRE + + + A D G PP V + I+D NDN P
Sbjct: 67 DETSGWLSVLHRI----DREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDI 474
NDN P F++S Y + EN G+ IL+ D+
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADL 41
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 59 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 118
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 119 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 178
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 179 DRESYPTYTLVVQAA 193
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 32 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 91
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 92 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 151
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 152 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 211
Query: 439 D 439
D
Sbjct: 212 D 212
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 21 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 80
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 81 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 140
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 141 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 194
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 195 LQGEGLSTTAKAVITVKD 212
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 35 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 94
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 95 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 128
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 122 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 181
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 182 DRESYPTYTLVVQAA 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 214
Query: 439 D 439
D
Sbjct: 215 D 215
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 24 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 83
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 84 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 143
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 144 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 197
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 198 LQGEGLSTTAKAVITVKD 215
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 38 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 97
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 131
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 61 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 120
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 121 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 180
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 181 DRESYPTYTLVVQAA 195
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 20/202 (9%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 23 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 82
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 83 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 142
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 143 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 196
Query: 238 GGSPPLRGSMIVNVTIQDVNDN 259
L + +T++D+NDN
Sbjct: 197 LQGEGLSTTAKAVITVKDINDN 218
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 38/185 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 34 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 93
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGIN---SVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ +N + I Y++
Sbjct: 94 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 153
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 154 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 213
Query: 439 DVNDN 443
D+NDN
Sbjct: 214 DINDN 218
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 37 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 96
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 97 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 130
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENV----RVVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A++ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 193 GNTNNAFRLSSH---REKDGVLYL-----DLQINGVLDRETIPEYSLVIEALDGGSPPLR 244
G FRLS ++ G+ + D+ + LDRE I Y L +E D +
Sbjct: 29 GTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIID 88
Query: 245 GSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS--NGEVEYSI 302
G + +++++ D NDN+P+F + Y V E + GT++ ++ A DAD S N + Y+I
Sbjct: 89 GPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNI 148
Query: 303 NRRQSDKDG--LFNIDSKSGLIFVNKA---LDFETKEVHDLVPRFAVEISSFD 350
++ K +F ID + G I + LD ET E P++ + I + D
Sbjct: 149 LKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETME----TPKYELVIEAKD 197
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 107 GEIRTKVPLDRETRSSYSLVA--IPLSGE----NVRVVVRVIDENDNAPTFP-SPFMSIE 159
G++ PLDRE ++Y L LSG+ VR+ + VID+NDN P F P++
Sbjct: 57 GDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVG-H 115
Query: 160 FPENTPRDVKRTLNAAKDRDLGIYNTQ--RYNIVSGNTNNAFRLSSHREKDGVLYLDLQI 217
E +P A D D + RYNI + + + + Y+D +
Sbjct: 116 VMEGSPTGTTVMRMTAFDADDPSTDNALLRYNI--------LKQTPTKPSPNMFYIDPEK 167
Query: 218 NGV--------LDRETI--PEYSLVIEALDGGS 240
+ LDRET+ P+Y LVIEA D G
Sbjct: 168 GDIVTVVSPVLLDRETMETPKYELVIEAKDMGG 200
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 49/213 (23%)
Query: 272 VPENAT--VGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKA 327
+PEN S+ +V ++ G+ ++ ++ + D+D G+F I+ SG + V +
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGA----KFRLSGKGVDQDPKGIFRINEISGDVSVTRP 64
Query: 328 LDFET-------KEVHDLVPRF-----AVEISSFD------------------EIAEPGT 357
LD E EV DL + ++IS D E + GT
Sbjct: 65 LDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGT 124
Query: 358 SVFQISAFDQDEGI--NSVITYSLRENTDDHPS--WFQIDSKSG-LITMKSNV--DCETD 410
+V +++AFD D+ N+++ Y++ + T PS F ID + G ++T+ S V D ET
Sbjct: 125 TVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETM 184
Query: 411 PVPK--LTVIATDNGVP--ALSSSATVLVTIHD 439
PK L + A D G L+ +AT + I D
Sbjct: 185 ETPKYELVIEAKDMGGHDVGLTGTATATILIDD 217
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 385 DHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE 444
D F+I+ SG +++ +D E +L V TD + + +++ D NDN
Sbjct: 45 DPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNR 104
Query: 445 PIFDQSFYNVTIPENKPKGSCILKSIFYD 473
P+F + Y + E P G+ +++ +D
Sbjct: 105 PMFKEGPYVGHVMEGSPTGTTVMRMTAFD 133
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I Y+L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVME 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSI---NRRQSDKDGLFNIDSKSGLI-FVNKA 327
A GTS+ +V ATDAD N + Y+I + DK+ +F I+ +G+I V
Sbjct: 120 GALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKN-MFTINRNTGVISVVTTG 178
Query: 328 LDFETKEVHDLVPRFA 343
LD E+ + LV + A
Sbjct: 179 LDRESFPTYTLVVQAA 194
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 32/186 (17%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRVVSFY----EPGEIRTKVPLDRETRSSYSLVA 127
++ K D+E + YS+ G + V + E G ++ PLDRE ++Y+L +
Sbjct: 22 VQIKSNKDKEGKVFYSITG---QGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFS 78
Query: 128 IPLSGEN------VRVVVRVIDENDNAP-----TFPSPFMSIEFPENTPRDVKRTLNAAK 176
+S + +++ V D+NDN P F M P + +V T
Sbjct: 79 HAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTAT---DA 135
Query: 177 DRDLGIYNTQ-RYNIVSGNT----NNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSL 231
D D+ YN Y I+S + N F ++ + GV+ + + LDRE+ P Y+L
Sbjct: 136 DDDVNTYNAAIAYTILSQDPELPDKNMFTINRNT---GVISV---VTTGLDRESFPTYTL 189
Query: 232 VIEALD 237
V++A D
Sbjct: 190 VVQAAD 195
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 38/164 (23%)
Query: 296 GEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFETKEVHDLV-------------- 339
G+V YSI + +D G+F I+ ++G + V + LD E + L
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP 91
Query: 340 --------------PRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLR 380
P F E+ S E A PGTSV +++A D D+ + N+ I Y++
Sbjct: 92 MEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTIL 151
Query: 381 ENTDDHP--SWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATD 421
+ P + F I+ +G+I+ + + +D E+ P L V A D
Sbjct: 152 SQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 358 SVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKL 415
++ QI + EG + YS+ D P F I+ ++G + + +D E L
Sbjct: 20 NLVQIKSNKDKEG---KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTL 76
Query: 416 TVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
A + A+ +L+T+ D NDN+P F Q + ++ E G+ +++
Sbjct: 77 FSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVME 129
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A + M + +T+ D NDN+P F Q + +V E
Sbjct: 60 LKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
D E+ + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
+ +D P F E+ S E A PGTSV ++SA D D+ + N+ I Y++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
+ H + F ++ +G+I+ + S +D E+ P L V A D LS++A ++T+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
D
Sbjct: 213 D 213
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAD 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
+GE V +V+ V D+NDN P F E V + D D+
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD 237
YN Y IVS + N F ++ GV+ + + LDRE+ P Y+LV++A D
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISV---LTSGLDRESYPTYTLVVQAAD 195
Query: 238 GGSPPLRGSMIVNVTIQD 255
L + +T++D
Sbjct: 196 LQGEGLSTTAKAVITVKD 213
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 377 YSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
YS+ D P F I+ ++G + + +D E L A + A+ ++
Sbjct: 36 YSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIV 95
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 18/130 (13%)
Query: 221 LDRETIPEYSLVIEALDGGS-----PPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPEN 275
LDRE EY L +D + PP + I+ V+ D+NDN PIF Q + +VPE
Sbjct: 61 LDREKKAEYELTAHIIDRRNNRSLEPPSK--FIIKVS--DINDNAPIFVQKIFNGSVPEM 116
Query: 276 ATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA-LDFE 331
+ +GTS+ +V A DAD + V Y I + F +D SG+IF +A LD E
Sbjct: 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE----YFTVDD-SGVIFTARADLDRE 171
Query: 332 TKEVHDLVPR 341
++ ++++ +
Sbjct: 172 SQSAYEIIVK 181
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 107 GEIRTKVPLDRETRSSYSLVAIPLSGENVR-------VVVRVIDENDNAPTFPSPFMSIE 159
G+I LDRE ++ Y L A + N R +++V D NDNAP F +
Sbjct: 53 GDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGS 112
Query: 160 FPENTPRDVKRTLNAAKDRD---LGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQ 216
PE + T A+D D + + T Y I+ G N F + + GV++
Sbjct: 113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG--NEYFTV----DDSGVIF---T 163
Query: 217 INGVLDRETIPEYSLVIEALDG 238
LDRE+ Y ++++A D
Sbjct: 164 ARADLDRESQSAYEIIVKAKDA 185
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 334 EVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHPS 388
+++D P F +I S E++ GTSV +++A D D+ ++ +TY + + +
Sbjct: 96 DINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE---- 151
Query: 389 WFQIDSKSGLITMKSNVDCETDPVPKLTVIATDN-GVPALSSSATVLVTIHD 439
+F +D + T ++++D E+ ++ V A D G+ SS+ATV++ + D
Sbjct: 152 YFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 390 FQIDSKSGLITMKSNVDCETDPVPKLTVIATDN-GVPALSSSATVLVTIHDVNDNEPIFD 448
F++ G I +D E +LT D +L + ++ + D+NDN PIF
Sbjct: 46 FKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFV 105
Query: 449 QSFYNVTIPENKPKGSCILK 468
Q +N ++PE G+ + K
Sbjct: 106 QKIFNGSVPEMSRLGTSVTK 125
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L++ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 275 NATVGTSIFQVFATDAD 291
A GTS+ +V ATDAD
Sbjct: 122 GAVPGTSVMKVSATDAD 138
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
++ K D+ET+ YS+ V V + E G ++ PLDRE + Y L A+
Sbjct: 24 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 83
Query: 129 PLSGENVR----VVVRVIDENDNAPTF 151
+GE V +V+ V D+NDN P F
Sbjct: 84 SSNGEAVEDPMEIVITVTDQNDNRPEF 110
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 32/109 (29%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
+V YSI + +DK G+F I+ ++G + V + LD E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGINS 373
+ +D P F E+ S E A PGTSV ++SA D D+ +N+
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 143
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 375 ITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSAT 432
+ YS+ D P F I+ ++G + + +D E L A + A+
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 433 VLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+++T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 131
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 249 VNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVF-----ATDADAGSNGEVEYSIN 303
V + ++D NDN P F Y+ATV E VGT+IF F ATD D G NG++EY I
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 304 RRQSD--KDGLFNIDSK-SGLIFVNKALDFETK 333
D + F I +G + + K L++E K
Sbjct: 173 YNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDK 205
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L + LDRE I + L A+D + + + + + D+NDN+P F + +VPE
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Query: 275 NATVGTSIFQVFATDAD--AGSNGEVEYSINRR--QSDKDGLFNIDSKSG-LIFVNKALD 329
+ GT + V A DAD NG + Y I + + +F I++++G +I V LD
Sbjct: 120 GSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 330 FETKEVHDLV 339
E + + L+
Sbjct: 180 REKVQQYTLI 189
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALD 329
+PEN+ G ++ +D N + YS+ +D+ G+F I+ SG + V K LD
Sbjct: 9 LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 330 FE----------------------------TKEVHDLVPRFAVEI--SSFDEIAEPGTSV 359
E +++D P F ++ S E ++PGT V
Sbjct: 68 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 360 FQISAFDQDE--GINSVITYSLRENTDDHPS--WFQIDSKSG-LITMKSNVDCETDPVPK 414
++A D D+ +N ++ Y + PS F I++++G +IT+ + +D E
Sbjct: 128 MTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 415 LTVIATD---NGVPALSSSATVLVTIHD 439
L + ATD N LS++AT ++T+ D
Sbjct: 188 LIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 107 GEIRTKVPLDRETRSSYSLVA--IPLSGENVR----VVVRVIDENDNAPTFPSPFMSIEF 160
G++ PLDRE + + L A + ++G V +V+ VID NDN P F +
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 161 PENT-PRDVKRTLNAAKDRDLGIYNTQ-RYNIVSG--NTNNAFRLSSHREKDGVLYLDLQ 216
PE + P T+ A D N RY IVS +T + + + E ++
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDII----T 173
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRG 245
+ LDRE + +Y+L+I+A D P G
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYG 202
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 368 DEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVP 425
D N + YS+ D P F I+ SG +++ +D E L A D
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN 86
Query: 426 ALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
+ + +++ + D+NDN P F +N ++PE G+ ++
Sbjct: 87 QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVM 128
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
L + LDRE I + L A+D + + + + + D+NDN+P F + +VPE
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Query: 275 NATVGTSIFQVFATDAD--AGSNGEVEYSINRR--QSDKDGLFNIDSKSG-LIFVNKALD 329
+ GT + V A DAD NG + Y I + + +F I++++G +I V LD
Sbjct: 120 GSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 330 FETKEVHDLV 339
E + + L+
Sbjct: 180 REKVQQYTLI 189
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALD 329
+PEN+ G ++ +D N + YS+ +D+ G+F I+ SG + V K LD
Sbjct: 9 LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 330 FE----------------------------TKEVHDLVPRFAVEI--SSFDEIAEPGTSV 359
E +++D P F ++ S E ++PGT V
Sbjct: 68 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 360 FQISAFDQDE--GINSVITYSLRENTDDHPS--WFQIDSKSG-LITMKSNVDCETDPVPK 414
++A D D+ +N ++ Y + PS F I++++G +IT+ + +D E
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 415 LTVIATD---NGVPALSSSATVLVTIHD 439
L + ATD N LS++AT ++T+ D
Sbjct: 188 LIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 107 GEIRTKVPLDRETRSSYSLVA--IPLSGENVR----VVVRVIDENDNAPTFPSPFMSIEF 160
G++ PLDRE + + L A + ++G V +V+ VID NDN P F +
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 161 PENT-PRDVKRTLNAAKDRDLGIYNTQ-RYNIVSG--NTNNAFRLSSHREKDGVLYLDLQ 216
PE + P T+ A D N RY I+S +T + + + E ++
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII----T 173
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRG 245
+ LDRE + +Y+L+I+A D P G
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYG 202
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 368 DEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVP 425
D N + YS+ D P F I+ SG +++ +D E L A D
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN 86
Query: 426 ALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
+ + +++ + D+NDN P F +N ++PE G+ ++
Sbjct: 87 QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVM 128
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 40/215 (18%)
Query: 133 ENVRVVVRVIDENDNAPTF---PSPFMSI---EFPENTPRDVKRTLNAAKDRDLGIYNTQ 186
+N RV++ V D ND P F P P ++ P NTP TL A RD +
Sbjct: 88 DNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP---VFTLQA---RDPDTDHNI 141
Query: 187 RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG-------- 238
Y IV T F + E+ GV+ + G + EY L ++A D
Sbjct: 142 HYFIVRDRTGGRFEVD---ERSGVV----RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194
Query: 239 --GSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNG 296
+P R S++ P F Y A +PEN + I + A + ++
Sbjct: 195 FQSTPEERLSIVGG-------KRAPQFYMPSYEAEIPENQKKDSDIISI---KAKSFADR 244
Query: 297 EVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFE 331
E+ Y++ + Q G FNI SG++ + K LDFE
Sbjct: 245 EIRYTL-KAQGQGAGTFNIGPTSGIVKLAKELDFE 278
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 24/134 (17%)
Query: 340 PRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLI 399
P +E + D E G SVFQ+ E T+ +R DD+P W +++ +G +
Sbjct: 5 PTKRIEFTEADGDTE-GKSVFQLEKETDKE------TFKIR---DDNP-WVTVET-NGAV 52
Query: 400 TMKSNVDCET---DPVPKLTVIATDNGVPA---LSSSATVLVTIHDVND------NEPIF 447
+K D E + VI T+ G A + + V++ + DVND N P+
Sbjct: 53 RVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLP 112
Query: 448 DQSFYNVTIPENKP 461
Q+ + P N P
Sbjct: 113 MQAVVQLNAPPNTP 126
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQ 265
+L + +LDRE P + L ALD + + + + + D+NDN+P+F Q
Sbjct: 71 ELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 363 SAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDN 422
S ++ G+ Y+ + T+ F + +G + + S +D E P LT A D
Sbjct: 36 SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDA 95
Query: 423 GVPALSSSATVLVTIHDVNDNEPIFDQ 449
+ + + + D+NDNEP+F Q
Sbjct: 96 RGNNVEKPLELRIKVLDINDNEPVFTQ 122
>pdb|3EZ9|A Chain A, Partition Protein
pdb|3EZ9|B Chain B, Partition Protein
pdb|3EZF|A Chain A, Partition Protein
Length = 403
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 239 GSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEV 298
G+ LR S ++ QD+ D + FNQ+ Y+ T NA D E
Sbjct: 11 GTIALRASALLKAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEED 70
Query: 299 EYSINRRQ 306
Y N++Q
Sbjct: 71 GYQFNKKQ 78
>pdb|2X2U|A Chain A, First Two Cadherin-Like Domains From Human Ret
Length = 246
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 93 LSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPL--SGENVRVV-----VRVIDEN 145
L GE + S + E+ T+ LDRE R Y LVA+ +G VV V V DE+
Sbjct: 179 LEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDED 238
Query: 146 DNAPTF 151
D+AP F
Sbjct: 239 DSAPEF 244
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 313 FNIDSKS--GLIFVNKALDFETKEVHDLV------PRFAVEISSFDEIAEPGTSVFQISA 364
FN+DSKS G+ F + L+ E K + + R+ S++ A V+ IS
Sbjct: 38 FNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK 97
Query: 365 FDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKS 403
E N ++ LREN DD+ + I +KS L +++
Sbjct: 98 SSSYENCNHWLS-ELRENADDNVAVGLIGNKSDLAHLRA 135
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 22 LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
L ISE PVG+ V + D L+ V G ++E +TG + + PLDRE
Sbjct: 18 LLISEDTPVGSSVTQL---LARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 82 TRSSYSL 88
T+S +++
Sbjct: 75 TKSEFTV 81
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 259 NQPIFNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI 315
N+ F + +F T + E+ VG+S+ Q+ A D D N + + ++ ++ + F +
Sbjct: 4 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFAV 58
Query: 316 DSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDE 351
+ +G++++ + LD ETK F VE S D
Sbjct: 59 EPDTGVVWLRQPLDRETKS------EFTVEFSVSDH 88
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 197 NAFRLSSH---REKDGVLYLD-----LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMI 248
+ FRL+ +E G+ ++ + + LDRE I Y L +E D L G +
Sbjct: 33 SKFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVP 92
Query: 249 VNVTIQDVNDNQP 261
+ V + D NDN+P
Sbjct: 93 LEVIVIDQNDNRP 105
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 313 FNIDSKS--GLIFVNKALDFETKEVHDLV------PRFAVEISSFDEIAEPGTSVFQISA 364
FNI+SKS G+ F + ++ E K++ + R+ S++ A V+ IS
Sbjct: 35 FNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISK 94
Query: 365 FDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKS 403
E N +T LREN DD+ + I +KS L +++
Sbjct: 95 SSSYENCNHWLT-ELRENADDNVAVGLIGNKSDLAHLRA 132
>pdb|2J1R|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module
pdb|2J1R|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module
pdb|2J1S|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With Fucose
pdb|2J1S|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With Fucose
pdb|2J1T|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Lewis Y Antigen
pdb|2J1T|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Lewis Y Antigen
pdb|2J1U|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group A-Tetrasaccharide
pdb|2J1U|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group A-Tetrasaccharide
pdb|2J1V|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group H-Trisaccharide
pdb|2J1V|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group H-Trisaccharide
Length = 151
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 385 DHPSWFQIDSKS----GLITMKSNVDCETDPVPKLTVIATDN 422
D+PSW+++D K GL+ + + D ET + VI DN
Sbjct: 58 DNPSWWEVDLKKMDKVGLVKIYNRTDAETQRLSNFDVILYDN 99
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 293 GSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEI 352
GS G + S+ R +D S G+ F K ++ K++ R + ++ E
Sbjct: 33 GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-----RLQIWDTAGQER 87
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSK-----SGLITMKSNVDC 407
TS + SA +GI V + +E DD P W ++ K + L+ + + +DC
Sbjct: 88 FNSITSAYYRSA----KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 408 ETD 410
ETD
Sbjct: 144 ETD 146
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 107 GEIRTKVPLDRETRSSYSLVA--IPLSGENVR----VVVRVIDENDNAPTF 151
G++ PLDRE + + L A + ++G V +V+ VID NDN P F
Sbjct: 60 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|1HYR|C Chain C, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 275
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 166 RDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYL 213
+D++ TL KD+ G+++ Q + + +N+ R S H DG L+L
Sbjct: 72 KDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGELFL 119
>pdb|1B3J|A Chain A, Structure Of The Mhc Class I Homolog Mic-A, A Gammadelta T
Cell Ligand
Length = 274
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 166 RDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYL 213
+D++ TL KD+ G+++ Q + + +N+ R S H DG L+L
Sbjct: 71 KDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGELFL 118
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 44 DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVA 90
DSG + + G T I+ +G I LDRE R+ Y+L+A
Sbjct: 30 DSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMA 76
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 43 GDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPL 93
GD Y++ G +I+ TG+I LDRE RS Y+L A L
Sbjct: 32 GDGSIKYIL---SGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQAL 79
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 158 IEFPENT----PRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYL 213
I PEN PRDV + +++ DR G V + FR++ E G
Sbjct: 8 ILIPENQRQPFPRDVGKVVDS--DRPEGSKFRLTGKGVDQDPKGTFRIN---ENTG---- 58
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
+ + LDRETI Y L +E D L G + + V + D
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>pdb|2WY3|A Chain A, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
pdb|2WY3|C Chain C, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
Length = 319
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 166 RDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRET 225
+D++RTL KD+ G+++ Q + + +++ R S H +G L+L + T
Sbjct: 72 QDLRRTLTHIKDQKGGLHSLQEIRVCEIHEDSSTRGSRHFYYNGELFLSQNLE--TQEST 129
Query: 226 IPEYS 230
+P+ S
Sbjct: 130 VPQSS 134
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 72 IRTKVPLDRETRSSYSLVAIPLSGENVRVVSFY----EPGEIRTKVPLDRETRSSYSLVA 127
++ K D+E + YS+ G + V + E G ++ PLDRE ++Y+L +
Sbjct: 26 VQIKSNKDKEGKVFYSITG---QGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFS 82
Query: 128 IPLSGEN------VRVVVRVIDENDN 147
+S + +++ V D+NDN
Sbjct: 83 HAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 369 EGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVD 406
+G NSV+ + D+H WF+ D+ GL+++ VD
Sbjct: 14 QGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVD 51
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 369 EGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVD 406
+G NSV+ + D+H WF+ D+ GL+++ VD
Sbjct: 14 QGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVD 51
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 271 TVPENATVG--TSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
++PEN + + +V +D GS ++ Y Q K G+F I+ SG + V KAL
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKL-YGKGVDQEPK-GIFKINENSGEVSVTKAL 65
Query: 329 DFETKEVHDLVPRFAVEISSFDE 351
D E +P + +++ + DE
Sbjct: 66 DREA------IPSYQLQVETTDE 82
>pdb|1JE6|A Chain A, Structure Of The Mhc Class I Homolog Micb
Length = 275
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 166 RDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRET 225
+D++RTL KD+ G+++ Q + + +++ R S H +G L+L + T
Sbjct: 72 QDLRRTLTHIKDQKGGLHSLQEIRVCEIHEDSSTRGSRHFYYNGELFLSQNLE--TQEST 129
Query: 226 IPEYS 230
+P+ S
Sbjct: 130 VPQSS 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,234,387
Number of Sequences: 62578
Number of extensions: 627590
Number of successful extensions: 1316
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 224
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)