RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8629
(483 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 98.9 bits (247), Expect = 4e-25
Identities = 43/91 (47%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPV 412
A PGT V +SA D D G N +TYS+ +D F ID +G IT +D E
Sbjct: 10 APPGTVVLTVSATDPDSGENGEVTYSIVSGNEDG--LFSIDPSTGEITTAKPLDREEQSS 67
Query: 413 PKLTVIATDNGVPALSSSATVLVTIHDVNDN 443
LTV ATD G P LSS+ATV +T+ DVNDN
Sbjct: 68 YTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 87.4 bits (217), Expect = 4e-21
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQ 216
+ PEN P +A D D G Y+IVSGN + F + G +
Sbjct: 3 EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPS---TGEITT--- 56
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDN 259
LDRE Y+L + A DGG PPL + V +T+ DVNDN
Sbjct: 57 -AKPLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 85.1 bits (211), Expect = 3e-20
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
Y +VPENA GT + V ATD D+G NGEV YSI ++DGLF+ID +G I K
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSI--VSGNEDGLFSIDPSTGEITTAKP 59
Query: 328 LDFETKEVHDLV 339
LD E + + L
Sbjct: 60 LDREEQSSYTLT 71
Score = 50.4 bits (121), Expect = 5e-08
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 43/132 (32%)
Query: 22 LEISEGVPVGTRVGFIG--DGFVGDSGPP----YLIVPVPGSAVDTDLSIEQNTGEIRTK 75
+ + E P GT V + D DSG Y IV + SI+ +TGEI T
Sbjct: 4 VSVPENAPPGTVVLTVSATDP---DSGENGEVTYSIVSGNEDGL---FSIDPSTGEITTA 57
Query: 76 VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
PLDRE +SSY+L V P PLS
Sbjct: 58 KPLDREEQSSYTLT--------VTATDGGGP----------------------PLSST-A 86
Query: 136 RVVVRVIDENDN 147
V + V+D NDN
Sbjct: 87 TVTITVLDVNDN 98
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 87.4 bits (217), Expect = 3e-21
Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 363 SAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDN 422
SA D D G N +TYS+ + + F ID ++G IT +D E P LTV ATD
Sbjct: 1 SATDADSGENGKVTYSI--LSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDG 58
Query: 423 GVPALSSSATVLVTIHDVNDNEP 445
G P LSS+ATV +T+ DVNDN P
Sbjct: 59 GGPPLSSTATVTITVLDVNDNAP 81
Score = 78.9 bits (195), Expect = 3e-18
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 175 AKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIE 234
A D D G Y+I+SGN + F + G + LDRE PEY+L +E
Sbjct: 2 ATDADSGENGKVTYSILSGNDDGLFSIDPE---TGEITT----TKPLDREEQPEYTLTVE 54
Query: 235 ALDGGSPPLRGSMIVNVTIQDVNDNQP 261
A DGG PPL + V +T+ DVNDN P
Sbjct: 55 ATDGGGPPLSSTATVTITVLDVNDNAP 81
Score = 58.5 bits (142), Expect = 4e-11
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 287 ATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
ATDAD+G NG+V YSI + DGLF+ID ++G I K LD E + + L
Sbjct: 2 ATDADSGENGKVTYSIL--SGNDDGLFSIDPETGEITTTKPLDREEQPEYTLT 52
Score = 49.7 bits (119), Expect = 5e-08
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 105 EPGEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAP 149
E GEI T PLDRE + Y+L PLS V + V+D NDNAP
Sbjct: 31 ETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSST-ATVTITVLDVNDNAP 81
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 72.3 bits (178), Expect = 8e-16
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDC 407
S E A GT V ++A D D G N I YS+ WF+ID +G ++ +D
Sbjct: 4 SVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGG--WFRIDPDTGDLSTTKPLDR 61
Query: 408 ETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
E+ +LTV+ATD+G P LSS+ TV +T+
Sbjct: 62 ESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 69.6 bits (171), Expect = 7e-15
Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIVSGNTNNAFRLSSHREKDGVLYLDL 215
S PEN P + A D DLG N + Y+I+ G FR+ G L
Sbjct: 2 SASVPENAPVGTEVLTVTATDADLG-PNGRIFYSILGGGPGGWFRID---PDTGDLST-- 55
Query: 216 QINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ 254
LDRE+I EY L + A D G PPL + V +T+
Sbjct: 56 --TKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 66.6 bits (163), Expect = 8e-14
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
Y A+VPENA VGT + V ATDAD G NG + YSI G F ID +G + K
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSI--LGGGPGGWFRIDPDTGDLSTTKP 58
Query: 328 LDFETKEVHDLV 339
LD E+ ++L
Sbjct: 59 LDRESIGEYELT 70
Score = 41.5 bits (98), Expect = 6e-05
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 23 EISEGVPVGTRVGFIGDGFVGD------SGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKV 76
+ E PVGT V + D Y I+ I+ +TG++ T
Sbjct: 4 SVPENAPVGTEVLTVT---ATDADLGPNGRIFYSILGGG---PGGWFRIDPDTGDLSTTK 57
Query: 77 PLDRETRSSYSLVAI 91
PLDRE+ Y L +
Sbjct: 58 PLDRESIGEYELTVL 72
Score = 33.0 bits (76), Expect = 0.053
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 105 EPGEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVI 142
+ G++ T PLDRE+ Y L + PLS V + V+
Sbjct: 49 DTGDLSTTKPLDRESIGEYELTVLATDSGGPPLSST-TTVTITVL 92
>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain. Cadherins are
glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers. This
family also includes the cadherin-like repeats of
extracellular alpha-dystroglycan.
Length = 98
Score = 33.9 bits (77), Expect = 0.035
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 384 DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDN 443
+ PSW + SG++ +D E V ++V A G +S+ + ++D NDN
Sbjct: 39 EALPSWLHWEPHSGILEGLEKLDREDKGVHYISVSAASLGANVPQTSSVFSIEVYDENDN 98
Score = 28.5 bits (63), Expect = 2.4
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 271 TVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK-DGLFNIDSKSGLIFVNKALD 329
+ E + G+ + TD A S I+ + + + SG++ + LD
Sbjct: 5 SAVEGRSRGSFRVSI-PTDLIASSG--EIIKISAAGKEALPSWLHWEPHSGILEGLEKLD 61
Query: 330 FETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDE 369
E K VH +V +S +SVF I +D+++
Sbjct: 62 REDKGVH----YISVSAASLGANVPQTSSVFSIEVYDEND 97
>gnl|CDD|214795 smart00736, CADG, Dystroglycan-type cadherin-like domains.
Cadherin-homologous domains present in metazoan
dystroglycans and alpha/epsilon sarcoglycans, yeast
Axl2p and in a very large protein from magnetotactic
bacteria. Likely to bind calcium ions.
Length = 97
Score = 32.3 bits (74), Expect = 0.097
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 363 SAFDQDEGINSVITYS--LRENTDDHPSWFQIDSKSGLIT-MKSNVDCETDPVPKLT--V 417
+ D D +TYS L + + PSW DS +G ++ +N D V L+ V
Sbjct: 23 TFTDAD---GDTLTYSATLSDGSAL-PSWLSFDSDTGTLSGTPTNSD-----VGSLSLKV 73
Query: 418 IATDNGVPALSSSATVLVTIHDVNDN 443
ATD+ S+S T +T+ + ND
Sbjct: 74 TATDSS--GASASDTFTITVVNTNDA 97
>gnl|CDD|238749 cd01472, vWA_collagen, von Willebrand factor (vWF) type A domain;
equivalent to the I-domain of integrins. This domain
has a variety of functions including: intermolecular
adhesion, cell migration, signalling, transcription, and
DNA repair. In integrins these domains form heterodimers
while in vWF it forms homodimers and multimers. There
are different interaction surfaces of this domain as
seen by its complexes with collagen with either integrin
or human vWFA. In integrins collagen binding occurs via
the metal ion-dependent adhesion site (MIDAS) and
involves three surface loops located on the upper
surface of the molecule. In human vWFA, collagen binding
is thought to occur on the bottom of the molecule and
does not involve the vestigial MIDAS motif.
Length = 164
Score = 31.8 bits (73), Expect = 0.42
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 295 NGEVEYSINRRQSDKDGLFNIDS---KSGLIFVNKALDFETKE-------VHDLVPRFAV 344
+ E+ +N +S D L + + G KAL + + + VP+ V
Sbjct: 49 DPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLV 108
Query: 345 EIS---SFDEIAEP-------GTSVFQISAFDQDEGINSVITYS 378
I+ S D++ EP G VF + + DE I
Sbjct: 109 VITDGKSQDDVEEPAVELKQAGIEVFAVGVKNADEEELKQIASD 152
>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK
subunit. Phenylacetate-CoA oxygenase is comprised of a
five gene complex responsible for the hydroxylation of
phenylacetate-CoA (PA-CoA) as the second catabolic step
in phenylacetic acid (PA) degradation. Although the
exact function of this enzyme has not been determined,
it has been shown to be required for phenylacetic acid
degradation and has been proposed to function in a
multicomponent oxygenase acting on phenylacetate-CoA
[Energy metabolism, Other].
Length = 352
Score = 32.5 bits (74), Expect = 0.49
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 80 RETRSSYSL---VAIPLSGENVRVVSFYEPGEIRT-KVPLD-RETRSSYSLVAIPLSGEN 134
R T + ++ + L+ + + PG+ T + +D E R SYS+ + P GE
Sbjct: 11 RLTADAVAISFEIPDELAEDYR-----FAPGQHLTLRREVDGEELRRSYSICSAPAPGE- 64
Query: 135 VRVVVRVI 142
+RV V+ I
Sbjct: 65 IRVAVKKI 72
>gnl|CDD|227219 COG4882, COG4882, Predicted aminopeptidase, Iap family [General
function prediction only].
Length = 486
Score = 31.5 bits (71), Expect = 1.2
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 127 AIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ 186
A+ + R +V D + + P+P PEN R + D + T
Sbjct: 118 ALLFESRDPRRIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAEEAGRVRLWVDACVERTY 177
Query: 187 RYNIV--SGNTNNAFRLSSH 204
YN++ G N + +H
Sbjct: 178 DYNVIAVDGGENGVVLIGAH 197
>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
subunit; Provisional.
Length = 246
Score = 30.2 bits (68), Expect = 1.9
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 54 VPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKV 113
V G +DTD I + P + E SY+L+ +P R F EPGE++TK
Sbjct: 75 VVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPAF-YKTR---FVEPGEMKTKY 130
Query: 114 PL 115
+
Sbjct: 131 SI 132
>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13
(mammalian uncoordinated)-like proteins. C2-like
domains are thought to be involved in phospholipid
binding in a Ca2+ independent manner in both Unc13 and
Munc13. Caenorabditis elegans Unc13 has a central domain
with sequence similarity to PKC, which includes C1 and
C2-related domains. Unc13 binds phorbol esters and DAG
with high affinity in a phospholipid manner. Mutations
in Unc13 results in abnormal neuronal connections and
impairment in cholinergic neurotransmission in the
nematode. Munc13 is the mammalian homolog which are
expressed in the brain. There are 3 isoforms (Munc13-1,
-2, -3) and are thought to play a role in
neurotransmitter release and are hypothesized to be
high-affinity receptors for phorbol esters. Unc13 and
Munc13 contain both C1 and C2 domains. There are two C2
related domains present, one central and one at the
carboxyl end. Munc13-1 contains a third C2-like domain.
Munc13 interacts with syntaxin, synaptobrevin, and
synaptotagmin suggesting a role for these as scaffolding
proteins. C2 domains fold into an 8-standed
beta-sandwich that can adopt 2 structural arrangements:
Type I and Type II, distinguished by a circular
permutation involving their N- and C-terminal beta
strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the third C2
repeat, C2C, and has a type-II topology.
Length = 133
Score = 29.5 bits (67), Expect = 1.9
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 391 QIDSKSGLITMKSNVDCETDPVPKLTVIATD--NGVPALSSSATVLVTIHDVNDNEPIFD 448
+I + L+ + SN DP K+ ++ VP + T+ P+FD
Sbjct: 21 EILNARNLLPLDSNGSS--DPFVKVELLPRHLFPDVPTPKTQ-VKKKTLF------PLFD 71
Query: 449 QSFY-NVTIPENKPKGSCILKSIF-YDIF 475
+SF NV + +G+ +L ++ YD+
Sbjct: 72 ESFEFNVPPEQCSVEGALLLFTVKDYDLL 100
>gnl|CDD|198310 cd03201, GST_C_DHAR, C-terminal, alpha helical domain of
Dehydroascorbate Reductase. Glutathione S-transferase
(GST) C-terminal domain family, Dehydroascorbate
Reductase (DHAR) subfamily; composed of plant-specific
DHARs, which are monomeric enzymes catalyzing the
reduction of DHA into ascorbic acid (AsA) using
glutathione as the reductant. DHAR allows plants to
recycle oxidized AsA before it is lost. AsA serves as a
cofactor of violaxanthin de-epoxidase in the xanthophyll
cycle and as an antioxidant in the detoxification of
reactive oxygen species. Because AsA is the major
reductant in plants, DHAR serves to regulate their redox
state. It has been suggested that a significant portion
of DHAR activity is plastidic, acting to reduce the
large amounts of ascorbate oxidized during hydrogen
peroxide scavenging by ascorbate peroxidase. DHAR
contains a conserved cysteine in its active site and in
addition to its reductase activity, shows thiol
transferase activity similar to glutaredoxins.
Length = 121
Score = 28.9 bits (65), Expect = 2.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 270 ATVPENATVGTSIFQVFAT-----DADAGS 294
T PE A+VG+ IF F T DA+ GS
Sbjct: 2 KTPPEFASVGSKIFSTFVTFLKSKDANDGS 31
>gnl|CDD|188875 cd09769, Luminal_IRE1, The Luminal domain, a dimerization domain,
of the Serine/Threonine protein kinase,
Inositol-requiring protein 1. The Luminal domain is a
dimerization domain present in Inositol-requiring
protein 1 (IRE1), a serine/threonine protein kinase
(STK) and a type I transmembrane protein that is
localized in the endoplasmic reticulum (ER). IRE1, also
called Endoplasmic reticulum (ER)-to-nucleus signaling
protein (or ERN), is a kinase receptor that also
contains an endoribonuclease domain in the cytoplasmic
side. It plays roles in the signaling of the unfolded
protein response (UPR), which is activated when protein
misfolding is detected in the ER in order to decrease
the synthesis of new proteins and increase the capacity
of the ER to cope with the stress. IRE1 acts as an ER
stress sensor and is the oldest and most conserved
component of the UPR in eukaryotes. During ER stress,
IRE1 dimerizes through its luminal domain and forms
oligomers, allowing the kinase domain to undergo
trans-autophosphorylation. This leads to a
conformational change that stimulates its
endoribonuclease activity and results in the cleavage of
its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans,
promoting a splicing event that enables translation into
a transcription factor which activates the UPR. Mammals
contain two IRE1 proteins, IRE1alpha (or ERN1) and
IRE1beta (or ERN2). IRE1alpha is expressed in all cells
and tissues while IRE1beta is found only in intestinal
epithelial cells.
Length = 295
Score = 29.2 bits (66), Expect = 4.3
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 20/102 (19%)
Query: 361 QISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIAT 420
Q S +GI Y+ + T +W+ +D ++G P+ V
Sbjct: 80 QSSPCRSSDGI----LYTGSKQT----TWYTVDPRTGEKIQVLGSGGADSNCPESCVDPD 131
Query: 421 DNGVPALSSSATV-------LVTIHDVNDNEPIFDQSFYNVT 455
D+ SSS+T+ VTI+D EPI +NVT
Sbjct: 132 DDEQSECSSSSTIYIGRTEYTVTIYDSKTREPI-----WNVT 168
>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases)
family 1 [Energy production and conversion].
Length = 266
Score = 29.2 bits (66), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 104 YEPGE-IRTKVPLDRETRS-SYSLVAIPLSGENVRVVVRVID 143
+EPG+ I +P E +YSL + P R+ V+ D
Sbjct: 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKRED 76
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 29.2 bits (65), Expect = 4.7
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 176 KDRDLGIYNTQR-YNIVSGNTNNAFRLSSHREKDGVLYLDLQIN--------GVLDRETI 226
K +DL +Y Q IV+ N R S K+GV+ +D+ IN G +D E +
Sbjct: 190 KTKDLSLYTRQADLIIVAAGCVNLLR--SDMVKEGVIVVDVGINRLESGKIVGDVDFEEV 247
Query: 227 PEYSLVIEALDGGSPPLRGSMIVNVTIQDVND 258
+ S I + GG P+ +M++ T++ +
Sbjct: 248 SKKSSYITPVPGGVGPMTIAMLLENTVKSAKN 279
>gnl|CDD|178774 PLN03236, PLN03236, 4-alpha-glucanotransferase; Provisional.
Length = 745
Score = 29.3 bits (65), Expect = 5.7
Identities = 28/151 (18%), Positives = 63/151 (41%), Gaps = 8/151 (5%)
Query: 267 RYFATVPENATVGTSIFQVFATDADA--GSNGEVEYS--INRRQSDKDGLFNIDSKSGLI 322
++F+ + + +G F+++ A A G G S I + + GL+++D
Sbjct: 359 QFFSAIRIDHILG--FFRIWELPAHAKTGRLGRFRPSLPIRKDELAARGLWDLDRLCEPW 416
Query: 323 FVNKALDFETKE-VHDLVPRFAVEISSFDEIAEPGTSVFQI-SAFDQDEGINSVITYSLR 380
++ L+ + + RF E + + +++ FD ++ I + R
Sbjct: 417 IQSEELEALFGDNDGEAAGRFFEETDAETKPDGTTRGLWKFRKEFDTEQAIFASEALKPR 476
Query: 381 ENTDDHPSWFQIDSKSGLITMKSNVDCETDP 411
++ DH + Q + ++GL+ + N DP
Sbjct: 477 DDFPDHLNDEQEELRAGLMQLFQNRCLLRDP 507
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 29.2 bits (66), Expect = 5.9
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 155 FMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLS 202
F+ +E PE D + L AA ++ + + G+ N RLS
Sbjct: 388 FLWLELPE--GIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLS 433
>gnl|CDD|233505 TIGR01646, vgr_GE, Rhs element Vgr protein. This model represents
the Vgr family of proteins, associated with some classes
of Rhs elements. This model does not include a large
octapeptide repeat region, VGXXXXXX, found in the Vgr of
Rhs classes G and E.
Length = 483
Score = 28.6 bits (64), Expect = 7.7
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 320 GLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQ--ISAFDQDEGINSVITY 377
L + LD D + ++ + +F I+ F N Y
Sbjct: 21 ILRSADADLDLAAMLGKDASLSLELPDAASTQ------RIFTGVIAGFSLGSTANGDARY 74
Query: 378 SL 379
SL
Sbjct: 75 SL 76
>gnl|CDD|226991 COG4644, COG4644, Transposase and inactivated derivatives, TnpA
family [DNA replication, recombination, and repair].
Length = 323
Score = 28.6 bits (64), Expect = 7.7
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 93 LSGENV--------RVVSFYEPGEIRTKVPLDRETR-SSYSLVAIPLSGENVRVVVRVID 143
L G NV R + F + GEI +E + SL+ L N + + + ++
Sbjct: 250 LEGLNVGESRNALNRAIFFGKGGEIYENYLEGQEDSALALSLLQNSLVYWNTKYIQQALE 309
Query: 144 ENDNAPTFPS 153
P
Sbjct: 310 ILKEGRNTPE 319
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,670,623
Number of extensions: 2423649
Number of successful extensions: 1957
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1941
Number of HSP's successfully gapped: 40
Length of query: 483
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 382
Effective length of database: 6,457,848
Effective search space: 2466897936
Effective search space used: 2466897936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)