RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8629
(483 letters)
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 275 bits (706), Expect = 9e-87
Identities = 106/412 (25%), Positives = 169/412 (41%), Gaps = 71/412 (17%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
G ++ PLDRE + Y L + + + +V+ V D+NDN P F
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDP-MEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 160 FPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLY 212
E +A D D + N Y IVS + N F ++ GV+
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNR---DTGVIS 173
Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATV 272
+ + LDRE+ P Y+LV++A D L + +T++D+NDN P+FN S Y V
Sbjct: 174 V---LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 273 PENATVGTSIFQVFATDADAGSNGEVE--YSINRRQSDKDGLFNI----DSKSGLIFVNK 326
PEN V I + TD DA + + Y++ +D D F + + G++ K
Sbjct: 231 PENE-VNARIATLKVTDDDAPNTPAWKAVYTV---VNDPDQQFVVVTDPTTNDGILKTAK 286
Query: 327 ALDFETKEVHDLV------------------------------PRF--AVEISSFDEIAE 354
LDFE K+ + L P F A E
Sbjct: 287 GLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFG 346
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
G + +A + D ++ ITY + +T +W +I+ ++G I ++ +D E K
Sbjct: 347 VGQEITSYTAREPDTFMDQKITYRIWRDTA---NWLEINPETGAIFTRAEMDREDAEHVK 403
Query: 415 -----LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
+IATD+G P + + T+L+ + DVNDN PI + +P
Sbjct: 404 NSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP 455
Score = 237 bits (608), Expect = 2e-72
Identities = 91/480 (18%), Positives = 148/480 (30%), Gaps = 99/480 (20%)
Query: 23 EISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRET 82
++EG GT V + SA D D + I
Sbjct: 116 SVAEGAVPGTSVMKV-------------------SATDADDDVNTYNAAIA--------- 147
Query: 83 RSSYSLVAIPLSGENVRVVSFY-----EPGEIRT-KVPLDRETRSSYSLV-------AIP 129
Y++ +S + + G I LDRE+ +Y+LV
Sbjct: 148 ---YTI----VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG 200
Query: 130 LSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQR-- 187
LS + V+ V D NDNAP F + PEN TL D D +
Sbjct: 201 LSTT-AKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKV-TDDDAPNTPAWKAV 258
Query: 188 YNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG---SPPLR 244
Y +V+ ++ DG+L LD E +Y L + + +
Sbjct: 259 YTVVNDPDQQFVVVTDPTTNDGILKTA----KGLDFEAKQQYILHVRVENEEPFEGSLVP 314
Query: 245 GSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINR 304
+ V V + DVN+ PIF + VPE+ VG I A + D + ++ Y I R
Sbjct: 315 STATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR 373
Query: 305 RQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFD-------------- 350
D I+ ++G IF +D E E H + I + D
Sbjct: 374 ---DTANWLEINPETGAIFTRAEMDREDAE-HVKNSTYVALIIATDDGSPIATGTGTLLL 429
Query: 351 -----------------EIAEPGTSVFQISAFDQDEGINS-VITYSLRENTDDHPSWFQI 392
+ + I+ D D N+ T L + + +
Sbjct: 430 VLLDVNDNAPIPEPRNMQFCQRNPQPHIITILDPDLPPNTSPFTAELTHGASVNWT-IEY 488
Query: 393 DSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFY 452
+ + + K+ + DN T+ V + D ++ +
Sbjct: 489 NDAAQESLILQPRKDLEIGEYKIHLKLADNQNK--DQVTTLDVHVCDCEGTVNNCMKAHH 546
Score = 232 bits (593), Expect = 3e-70
Identities = 80/360 (22%), Positives = 130/360 (36%), Gaps = 62/360 (17%)
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYL 213
I PEN + + L + Y+I F + + G L +
Sbjct: 7 ISCPENEKGEFPKNL-VQIKSNRDKETKVFYSITGQGADKPPVGVFIIE---RETGWLKV 62
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V
Sbjct: 63 ----TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 274 ENATVGTSIFQVFATDADAG---SNGEVEYSINRRQSDK--DGLFNIDSKSGLIFV-NKA 327
E A GTS+ +V ATDAD N + Y+I + + +F ++ +G+I V
Sbjct: 119 EGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG 178
Query: 328 LDFETKEVHDLV----------------------------PRFAVEISSFDEIAE--PGT 357
LD E+ + LV P F + ++ E
Sbjct: 179 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS-TYQGQVPENEVNA 237
Query: 358 SVFQISAFDQDEGIN--SVITYSLRENTDDHPSWFQI----DSKSGLITMKSNVDCETDP 411
+ + D D Y++ + D F + + G++ +D E
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQQ---FVVVTDPTTNDGILKTAKGLDFEAKQ 294
Query: 412 VPKLTVIATDNG---VPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
L V + + S+ATV V + DVN+ PIF + V +PE+ G I
Sbjct: 295 QYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITS 353
Score = 103 bits (259), Expect = 8e-24
Identities = 42/262 (16%), Positives = 76/262 (29%), Gaps = 69/262 (26%)
Query: 22 LEISEGVPVGTRVGFIG--DGFVGDSGPP----YLIVPVPGSAVDTDLSIEQNTGEIRTK 75
+E+ E VG + + D+ Y I + + I TG I T+
Sbjct: 339 VEVPEDFGVGQEITSYTAREP---DTFMDQKITYRIWRDTANWL----EINPETGAIFTR 391
Query: 76 VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSL--VAI----- 128
+DRE + S+Y +A
Sbjct: 392 AEMDRED--------------------------------AEHVKNSTYVALIIATDDGSP 419
Query: 129 PLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQR- 187
+G +++ ++D NDNAP M P + D DL NT
Sbjct: 420 IATG-TGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHII-----TILDPDLP-PNTSPF 472
Query: 188 -YNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGS 246
+ G + N + + + L L I EY + ++ D +
Sbjct: 473 TAELTHGASVN-WTIEYNDAAQESLIL-----QPRKDLEIGEYKIHLKLADNQNKDQ--V 524
Query: 247 MIVNVTIQDVNDNQPIFNQSRY 268
++V + D ++ +
Sbjct: 525 TTLDVHVCDCEGTVNNCMKAHH 546
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 268 bits (686), Expect = 7e-84
Identities = 104/413 (25%), Positives = 168/413 (40%), Gaps = 74/413 (17%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
G + PLDRE Y L + P+ + + + VID+NDN P F
Sbjct: 64 GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDVFRGS 122
Query: 160 FPENTPRD--VKRTLNAAKDRDLGIY--NTQ-RYNIVSGN----TNNAFRLSSHREKDGV 210
E V ++A D D I N Y+I+ + N F ++ + GV
Sbjct: 123 VREGVQPGTQVM-AVSA-TDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINR---ETGV 177
Query: 211 LYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFA 270
+ L I LDRE PEY+L ++A D L + I D NDN PIF+ Y A
Sbjct: 178 ISL---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTA 234
Query: 271 TVPENATVGTSIFQVFATDADAGSNG--EVEYSINRRQSDKDGLFNI----DSKSGLIFV 324
VPEN +G + ++ TD D + Y I + ++ G FNI +S G++
Sbjct: 235 LVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKI---RVNEGGFFNITTDPESNQGILTT 290
Query: 325 NKALDFETKEVHDLV------------------------------PRF--AVEISSFDEI 352
K LDFE ++ + L P F AV E
Sbjct: 291 AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSED 350
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPV 412
G + + A D D+ ++Y + + W ++ +G++T N+D E++ V
Sbjct: 351 LSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA---RWLTVNKDNGIVTGNGNLDRESEYV 407
Query: 413 P----KLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
+ ++ TD+GV + + T+++ + DVNDN P+ + + +P
Sbjct: 408 KNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP 460
Score = 237 bits (606), Expect = 4e-72
Identities = 94/471 (19%), Positives = 151/471 (32%), Gaps = 93/471 (19%)
Query: 23 EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVP-VPGSAVDTDLSIEQNTGEIRTK 75
+ EGV GT+V + D +G Y I+ P + +I + TG I
Sbjct: 122 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 181
Query: 76 V-PLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGEN 134
LDRE Y+L V+ D E LS E
Sbjct: 182 GTGLDREKFPEYTLT--------VQAT--------------DLEGA--------GLSVE- 210
Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDL-GIYNTQRYNIVSG 193
+ ++++ D NDNAP F + PEN + L+ D D+ G Q +
Sbjct: 211 GKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSV-TDLDMPGTPAWQAVYKIRV 269
Query: 194 NTNNAFRLSSHREK-DGVLYLDLQINGVLDRETIPEYSLVIEALDG---GSPPLRGSMIV 249
N F +++ E G+L LD E +Y L I + P + V
Sbjct: 270 NEGGFFNITTDPESNQGILTTA----KGLDFELRKQYVLQITVENAEPFSVPLPTSTATV 325
Query: 250 NVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK 309
VT++DVN+ P F + V E+ + G I + A D D ++ Y I +D
Sbjct: 326 TVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI---GNDP 381
Query: 310 DGLFNIDSKSGLIFVNKALDFETKEVH--------------------------------D 337
++ +G++ N LD E++ V D
Sbjct: 382 ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND 441
Query: 338 LVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINS-VITYSLRENTDDHPSWFQIDSKS 396
P + + + P V ++ D D N+ SL +D +W
Sbjct: 442 NGPVPSPRVFTM-CDQNPEPQV--LTISDADIPPNTYPYKVSLSHGSD--LTWKAELDSK 496
Query: 397 GLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF 447
G + S + V+ +D + V
Sbjct: 497 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVC--SCEGKAIKC 545
Score = 230 bits (588), Expect = 1e-69
Identities = 84/370 (22%), Positives = 137/370 (37%), Gaps = 64/370 (17%)
Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSS 203
+ P + + E P + +N Y+I FR+
Sbjct: 5 HHDWVIPPIKVSENERGP---FPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIE- 60
Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIF 263
+ G + + LDRE +Y L A+ P+ M + + + D NDN+P F
Sbjct: 61 --WETGWMLV----TRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKF 114
Query: 264 NQSRYFATVPENATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDK--DGLFNIDSK 318
Q + +V E GT + V ATD D NG + YSI ++ ++ LF I+ +
Sbjct: 115 TQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRE 174
Query: 319 SGLIFV-NKALDFETKEVHDLV----------------------------PRFAVEISSF 349
+G+I + LD E + L P F + +
Sbjct: 175 TGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPK-TYT 233
Query: 350 DEIAE--PGTSVFQISAFDQDEGIN--SVITYSLRENTDDHPSWFQI----DSKSGLITM 401
+ E G V ++S D D Y +R N +F I +S G++T
Sbjct: 234 ALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG---FFNITTDPESNQGILTT 290
Query: 402 KSNVDCETDPVPKLTVIATD---NGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPE 458
+D E L + + VP +S+ATV VT+ DVN+ P F + V + E
Sbjct: 291 AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSE 349
Query: 459 NKPKGSCILK 468
+ +G I+
Sbjct: 350 DLSRGEKIIS 359
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 271 bits (694), Expect = 4e-82
Identities = 103/411 (25%), Positives = 168/411 (40%), Gaps = 70/411 (17%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
G + PLDRE Y L + P+ + + + VID+NDN P F
Sbjct: 213 GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDVFRGS 271
Query: 160 FPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLY 212
E + +A D D I N Y+I+ + N F ++ + GV+
Sbjct: 272 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINR---ETGVIS 328
Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATV 272
L I LDRE PEY+L ++A D L + I D NDN PIF+ Y A V
Sbjct: 329 L---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALV 385
Query: 273 PENATVGTSIFQVFATDADAGSNG--EVEYSINRRQSDKDGLFNI----DSKSGLIFVNK 326
PEN +G + ++ TD D + Y I + ++ G FNI +S G++ K
Sbjct: 386 PENE-IGFEVQRLSVTDLDMPGTPAWQAVYKI---RVNEGGFFNITTDPESNQGILTTAK 441
Query: 327 ALDFETKEVHDLV------------------------------PRFAVEISSFD--EIAE 354
LDFE ++ + L P F +S D E
Sbjct: 442 GLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLS 501
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVP- 413
G + + A D D+ ++Y + + W ++ +G++T N+D E++ V
Sbjct: 502 RGEKIISLVAQDPDKQQIQKLSYFIGNDPA---RWLTVNKDNGIVTGNGNLDRESEYVKN 558
Query: 414 ---KLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
+ ++ TD+GV + + T+++ + DVNDN P+ + + +P
Sbjct: 559 NTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP 609
Score = 242 bits (618), Expect = 2e-71
Identities = 95/510 (18%), Positives = 167/510 (32%), Gaps = 108/510 (21%)
Query: 22 LEISEG-VPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
++ + G ++G + D + L D+ + G + K +
Sbjct: 44 FSVNRRELERGRKLGKVNFSDC---TTRKHGLY-----DVGDSRFRVL-PDGTVLVKRHV 94
Query: 79 DRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAI------PLSG 132
+ +++ R + S ++
Sbjct: 95 KLHKDTKFTISTW-----------------------DARGIKHSTNIAVASKRHRSGEEA 131
Query: 133 ENVRVVVRVIDENDNAPTFPSPFMS-----IEFPENTPRDVKRTLNAAKDRDLGIYNTQR 187
+ + V+ + I+ EN + L + +N
Sbjct: 132 HSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRL-VQIKSNKDRFNKVY 190
Query: 188 YNIVSGNT----NNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPL 243
Y+I FR+ + G + + LDRE +Y L A+ P+
Sbjct: 191 YSITGQGADNPPQGVFRIE---WETGWMLV----TRPLDREEYDKYVLSSHAVSENGSPV 243
Query: 244 RGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA---GSNGEVEY 300
M + + + D NDN+P F Q + +V E GT + V ATD D NG + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303
Query: 301 SINRRQ--SDKDGLFNIDSKSGLIFV-NKALDFETKEVHDLV------------------ 339
SI ++ LF I+ ++G+I + LD E + L
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 363
Query: 340 ----------PRFAVEISSFDEIAE--PGTSVFQISAFDQDEG--INSVITYSLRENTDD 385
P F + + + E G V ++S D D Y +R N
Sbjct: 364 IQITDANDNAPIFDPKTYTA-LVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 422
Query: 386 HPSWFQI----DSKSGLITMKSNVDCETDPVPKLTVIATD---NGVPALSSSATVLVTIH 438
+F I +S G++T +D E L + + VP +S+ATV VT+
Sbjct: 423 ---FFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVE 479
Query: 439 DVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
DVN+ P F + V + E+ +G I+
Sbjct: 480 DVNEA-PFFVPAVSRVDVSEDLSRGEKIIS 508
Score = 234 bits (598), Expect = 1e-68
Identities = 89/479 (18%), Positives = 148/479 (30%), Gaps = 87/479 (18%)
Query: 23 EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIV-PVPGSAVDTDLSIEQNTGEIRTK 75
+ EGV GT+V + D +G Y I+ P + +I + TG I
Sbjct: 271 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 330
Query: 76 V-PLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGEN 134
LDRE Y+L V+ D E LS E
Sbjct: 331 GTGLDREKFPEYTLT--------VQAT--------------DLEGA--------GLSVE- 359
Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDL-GIYNTQRYNIVSG 193
+ ++++ D NDNAP F + PEN + L+ D D+ G Q +
Sbjct: 360 GKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSV-TDLDMPGTPAWQAVYKIRV 418
Query: 194 NTNNAFRLS-SHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG---GSPPLRGSMIV 249
N F ++ G+L LD E +Y L I + P + V
Sbjct: 419 NEGGFFNITTDPESNQGILTT----AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATV 474
Query: 250 NVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK 309
VT++DVN+ P F + V E+ + G I + A D D ++ Y I +D
Sbjct: 475 TVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG---NDP 530
Query: 310 DGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVE------------------------ 345
++ +G++ N LD E++ V + +
Sbjct: 531 ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND 590
Query: 346 -----ISSFDEIAEPGTSVFQISAFDQDEGINSV-ITYSLRENTDDHPSWFQIDSKSGLI 399
+ + ++ D D N+ SL +D +W G
Sbjct: 591 NGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSD--LTWKAELDSKGTS 648
Query: 400 TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPE 458
+ S + V+ +D + T+ +
Sbjct: 649 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVN--ATVCSCEGKAIKCQEKLVGGFDLP 705
Score = 209 bits (533), Expect = 1e-59
Identities = 74/377 (19%), Positives = 132/377 (35%), Gaps = 61/377 (16%)
Query: 137 VVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLN-AAKDRDLGIYNTQRYNIVSGNT 195
V D + P F S ++ D + +
Sbjct: 23 VPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRK------HGLYDVG 76
Query: 196 NNAFRLSS------HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIV 249
++ FR+ R I+ R ++ + + S S
Sbjct: 77 DSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSS 136
Query: 250 NVTIQDVNDNQPIFNQSR-------YFATVPENATVGTSIFQVFATDADAGSNGEVEYSI 302
+ + + + + + E + Q+ ++ +V YSI
Sbjct: 137 KLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSI 193
Query: 303 NRRQSDKD--GLFNIDSKSGLIFVNKALDFETKEVHDLV--------------------- 339
+ +D G+F I+ ++G + V + LD E + + L
Sbjct: 194 TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINV 253
Query: 340 -------PRFAVEI--SSFDEIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHP 387
P+F ++ S E +PGT V +SA D+D+ +N V++YS+ + + P
Sbjct: 254 IDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEP 313
Query: 388 SW--FQIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE 444
F I+ ++G+I + + +D E P LTV ATD LS ++ I D NDN
Sbjct: 314 IPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNA 373
Query: 445 PIFDQSFYNVTIPENKP 461
PIFD Y +PEN+
Sbjct: 374 PIFDPKTYTALVPENEI 390
Score = 165 bits (418), Expect = 4e-44
Identities = 40/276 (14%), Positives = 87/276 (31%), Gaps = 42/276 (15%)
Query: 235 ALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE-NATVGTSIFQVFATDADAG 293
A L +V DV+ +P F+ + Y +V G + +V +D
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68
Query: 294 SNGEVEYSINRRQSDKDG----LFNIDSKSGLIFVNKALDFETKE-------------VH 336
+G + +R + DG ++ F D +
Sbjct: 69 KHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSG 128
Query: 337 DLVPRFAVEISSFD----------------------EIAEPGTSVFQISAFDQDEGINSV 374
+ + ++ E G ++ ++ +
Sbjct: 129 EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNK 188
Query: 375 ITYSLR-ENTDDHP-SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSAT 432
+ YS+ + D+ P F+I+ ++G + + +D E L+ A +
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 248
Query: 433 VLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+ + + D NDN P F Q + ++ E G+ ++
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMA 284
Score = 57.6 bits (139), Expect = 6e-09
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 418 IATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPE-NKPKGSCILKSIFYD 473
A+ L V DV+ +P F + Y ++ +G + K F D
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSD 64
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 262 bits (672), Expect = 1e-81
Identities = 107/418 (25%), Positives = 164/418 (39%), Gaps = 74/418 (17%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
G++ PLDRE + + L A + + +V+ VID NDN P F +
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENP-IDIVINVIDMNDNRPEFLHQVWNGS 116
Query: 160 FPENTPRDVK-RTLNAAKDRDLGIY-NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLY 212
PE + T+ A D D N RY I+S + N F +++ + G +
Sbjct: 117 VPEGSKPGTYVMTVT-AIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN---ETGDII 172
Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPP---LRGSMIVNVTIQDVNDNQPIFNQSRYF 269
+ LDRE + +Y+L+I+A D P L + +T+ DVNDN P F ++
Sbjct: 173 T---VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFY 229
Query: 270 ATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVN 325
VPEN V + + TD D + D G F I +S GL+ V
Sbjct: 230 GEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVV 288
Query: 326 KALDFETKEVHDLV---------------------------------PRFAVEISSFD-- 350
K +DFET + L P FA
Sbjct: 289 KPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQE 348
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
E GT + ++A D D + I Y+ + +W +ID +G IT + +D E+
Sbjct: 349 EGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPA---NWLKIDPVNGQITTIAVLDRESP 405
Query: 411 PVPK----LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGS 464
V T +A+DNG+P +S + T+ + + D+NDN P E S
Sbjct: 406 NVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNS 461
Score = 257 bits (658), Expect = 1e-79
Identities = 101/482 (20%), Positives = 163/482 (33%), Gaps = 89/482 (18%)
Query: 23 EISEGVPVGTRVGFI----GDGFVGDSGP-PYLIV-PVPGSAVDTDLSIEQNTGEIRT-K 75
+ EG GT V + D +G Y I+ P + +I TG+I T
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175
Query: 76 VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
LDRE Y+L+ ++ D E +Y L
Sbjct: 176 AGLDREKVQQYTLI--------IQAT--------------DMEGNPTYGLSN------TA 207
Query: 136 RVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQR--YNIVSG 193
V+ V D NDN P F + E PEN + L D+D Y I G
Sbjct: 208 TAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTV-TDKDQPHTPAWNAAYRISGG 266
Query: 194 NTNNAFRLSSHREK-DGVLYLDLQINGVLDRETIPEYSLVIEALD------GGSPPLRGS 246
+ F + + DG++ + +D ET + L + A + G P + +
Sbjct: 267 DPTGRFAILTDPNSNDGLVTVV----KPIDFETNRMFVLTVAAENQVPLAKGIQHPPQST 322
Query: 247 MIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQ 306
V+VT+ DVN+N P F + E GT + + A D D + Y+
Sbjct: 323 ATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL--- 378
Query: 307 SDKDGLFNIDSKSGLIFVNKALDFETKEVH------------------------------ 336
SD ID +G I LD E+ V
Sbjct: 379 SDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLD 438
Query: 337 --DLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINS-VITYSLRENTDDHPSWFQID 393
D P+ + + E EP I+A D D N+ + L + + I+
Sbjct: 439 INDNAPQVLPQEAETCETPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTIN 496
Query: 394 SKSGLI-TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFY 452
+G + + + ++ +I TD+G P S+ + + V + + N D +
Sbjct: 497 RLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556
Query: 453 NV 454
+
Sbjct: 557 HH 558
Score = 225 bits (576), Expect = 1e-67
Identities = 84/363 (23%), Positives = 136/363 (37%), Gaps = 62/363 (17%)
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYL 213
I PEN+ + L D + RY++ F ++ G L +
Sbjct: 7 INLPENSRGPFPQEL-VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIIN---PISGQLSV 62
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
LDRE I + L A+D + + + + + D+NDN+P F + +VP
Sbjct: 63 ----TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 274 ENATVGTSIFQVFATDADA--GSNGEVEYSI--NRRQSDKDGLFNIDSKSGLIF-VNKAL 328
E + GT + V A DAD NG + Y I + +F I++++G I V L
Sbjct: 119 EGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGL 178
Query: 329 DFETKEVHDLV-------------------------------PRFAVEISSFDEIAE--P 355
D E + + L+ P F E+ E
Sbjct: 179 DREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG-EVPENRV 237
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQI----DSKSGLITMKSNVDCETDP 411
V ++ D+D+ + R + D F I +S GL+T+ +D ET+
Sbjct: 238 DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNR 297
Query: 412 VPKLTVIATDNGV------PALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSC 465
+ LTV A + S+ATV VT+ DVN+N P F + + E G+
Sbjct: 298 MFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTM 356
Query: 466 ILK 468
+
Sbjct: 357 LTT 359
Score = 108 bits (271), Expect = 2e-25
Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 55/257 (21%)
Query: 22 LEISEGVPVGTRVGFIG--DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
+ EG+ GT + + D Y + P + + I+ G+I T L
Sbjct: 345 IRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWL----KIDPVNGQITTIAVL 400
Query: 79 DRET----RSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGEN 134
DRE+ + Y+ P P+SG
Sbjct: 401 DRESPNVKNNIYNAT--------FLASDNGIP----------------------PMSG-T 429
Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIV 191
+ + ++D NDNAP E E + A D D+ +
Sbjct: 430 GTLQIYLLDINDNAPQVLPQ--EAETCETPEPNS--INITALDYDIDPNAGPFAFDLPLS 485
Query: 192 SGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNV 251
+ ++ L+L+ + Y + I D G+PP I+ V
Sbjct: 486 PVTIKRNWTINRL--NGDFAQLNLK----IKFLEAGIYEVPIIITDSGNPPKSNISILRV 539
Query: 252 TIQDVNDNQPIFNQSRY 268
+ + N + +
Sbjct: 540 KVCQCDSNGDCTDVHHH 556
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 239 bits (612), Expect = 2e-74
Identities = 66/358 (18%), Positives = 117/358 (32%), Gaps = 58/358 (16%)
Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH-REKDGVLYLDL 215
S + + D + + F++ +
Sbjct: 1 SRRVTRAVRPTKRIE---FTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57
Query: 216 QINGVLDRETIPE------YSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQS--R 267
++ D E + + ++ + V + ++DVND P F
Sbjct: 58 RVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLP 117
Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
A V NA T +F + A D D N + Y I R G F +D +SG++
Sbjct: 118 MQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVR--DRTGGRFEVDERSGVVRTRGT 173
Query: 328 LDFETKEVHDLV-------------------------------PRFAVE--ISSFDEIAE 354
F+ + L P+F + + E +
Sbjct: 174 DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQK 233
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
+ + I A + I Y+L+ + F I SG++ + +D E P
Sbjct: 234 KDSDIISIKAKSFA---DREIRYTLKAQGQGAGT-FNIGPTSGIVKLAKELDFEDLRQPH 289
Query: 415 ---LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNV-TIPENKPKGSCILK 468
L V AT++ S+S + + + DVNDN P F+ Y + E+ P G+ IL+
Sbjct: 290 VYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILR 346
Score = 234 bits (600), Expect = 1e-72
Identities = 98/476 (20%), Positives = 152/476 (31%), Gaps = 117/476 (24%)
Query: 22 LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
++ V R+ + D D E
Sbjct: 2 RRVTRAVRPTKRI----------------------EFTEADG---------------DTE 24
Query: 82 TRSSYSLVAIPLSG-----ENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAI-------- 128
+S + L ++ V+ G +R K D E +
Sbjct: 25 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84
Query: 129 -----PLSGENVRVVVRVIDENDNAPTFPSP--FMSIEFPENTPRDVK-RTLNAAKDRDL 180
+ N RV++ V D ND P F + M N P + TL A+D D
Sbjct: 85 HNAGIKYTD-NQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ-ARDPDT 142
Query: 181 GIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGS 240
N Y IV T F + + GV+ G + EY L ++A D
Sbjct: 143 DH-NI-HYFIVRDRTGGRFEVDE---RSGVVRT----RGTDLFQLDMEYVLYVKAEDQNG 193
Query: 241 PPLRGSMIVNVTIQ---DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGE 297
+ P F Y A +PEN + I + A + E
Sbjct: 194 KVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DRE 250
Query: 298 VEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFET---KEVHDLV--------------- 339
+ Y++ + Q G FNI SG++ + K LDFE V+ L+
Sbjct: 251 IRYTL-KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVD 309
Query: 340 ------------PRFAVEISSFDEIAE---PGTSVFQISAFDQDEGINSVITYSLRENTD 384
P+F + + E GTS+ ++ A D D G N+ I Y + +
Sbjct: 310 LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD--- 366
Query: 385 DHPSWFQIDSKSGLITMKSNVDCET-DPVPKLTVIATDNGVPALSSSATVLVTIHD 439
F +DS +G+I +D + + + V A D G P S ATV V +
Sbjct: 367 ---DHFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 209 bits (533), Expect = 5e-64
Identities = 65/333 (19%), Positives = 108/333 (32%), Gaps = 70/333 (21%)
Query: 163 NTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHR-----EKDGVLYLDLQI 217
+ R KR + D + + F++ E +G + +
Sbjct: 1 SAVRPTKRIE--FTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV---- 54
Query: 218 NGVLDRE------TIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQS--RYF 269
D E TI + ++ + V + ++DVND P F
Sbjct: 55 KKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQ 114
Query: 270 ATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALD 329
A V NA T +F + A D D N + Y I + G F +D +SG++
Sbjct: 115 AVVQLNAPPNTPVFTLQARDPDTDHN--IHYFI--VRDRTGGRFEVDERSGVVRTRGTDL 170
Query: 330 FETKEVHDLV-------------------------------PRFA-----VEISSFDEIA 353
F+ + L P+F EI E
Sbjct: 171 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP---ENQ 227
Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVP 413
+ + + I A + I Y+L+ F I SG++ + +D E P
Sbjct: 228 KKDSDIISIKAKSFA---DREIRYTLKAQGQGA-GTFNIGPTSGIVKLAKELDFEDLRQP 283
Query: 414 K---LTVIATDNGVPALSSSATVLVTIHDVNDN 443
L V AT++ S+S + + + DVNDN
Sbjct: 284 HVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315
Score = 195 bits (498), Expect = 8e-59
Identities = 58/245 (23%), Positives = 90/245 (36%), Gaps = 34/245 (13%)
Query: 107 GEIRTKVPLDRETRSSYSLV-------------AIPLSGENVRVVVRVIDENDNAPTFPS 153
G +R K D E + I + N RV++ V D ND P F +
Sbjct: 50 GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTD-NQRVIILVKDVNDEPPYFIN 108
Query: 154 PFMSIEF--PENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVL 211
+ ++ N P + A+D D N Y IV T F + + GV+
Sbjct: 109 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDH-NIH-YFIVRDRTGGRFEVDE---RSGVV 163
Query: 212 YLDLQINGVLDRETIPEYSLVIEALDGGSPP----LRGSMIVNVTIQDVNDNQPIFNQSR 267
G + EY L ++A D + + ++I P F
Sbjct: 164 RTR----GTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPS 218
Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
Y A +PEN + I + A + E+ Y++ + Q G FNI SG++ + K
Sbjct: 219 YEAEIPENQKKDSDIISIKAKSFA---DREIRYTL-KAQGQGAGTFNIGPTSGIVKLAKE 274
Query: 328 LDFET 332
LDFE
Sbjct: 275 LDFED 279
Score = 145 bits (369), Expect = 4e-40
Identities = 45/235 (19%), Positives = 72/235 (30%), Gaps = 53/235 (22%)
Query: 282 IFQVFATDADAGSNGEVEYSINRRQS------DKDGLFNIDSKSGLIFVNKALDFETKEV 335
++ T+AD + G+ + + + D + +G + V K D+E
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 336 HDLV----------------------------------PRFAVEISSFD----EIAEPGT 357
+ P F A P T
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNT 125
Query: 358 SVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTV 417
VF + A D D N I Y + D F++D +SG++ + + D L V
Sbjct: 126 PVFTLQARDPDTDHN--IHYFIVR--DRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYV 181
Query: 418 IATDNGVPA----LSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
A D S+ ++I P F Y IPEN+ K S I+
Sbjct: 182 KAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIIS 235
Score = 106 bits (266), Expect = 1e-25
Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 51/243 (20%)
Query: 24 ISEGVPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
+ P T V + D + +++ G +++ +G +RT+ +
Sbjct: 117 VQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGR----FEVDERSGVVRTRGTDLFQ 172
Query: 82 TRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
Y L V+ D+ + + +
Sbjct: 173 LDMEYVLY--------VKA--------------EDQNGKVDDR----RFQS-TPEERLSI 205
Query: 142 IDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIV-SGNTNNAF 199
+ AP F P E PEN +D AK + + RY + G F
Sbjct: 206 VG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA----DREIRYTLKAQGQGAGTF 260
Query: 200 RLSSHREKDGVLYLDLQINGVLDRETIPE---YSLVIEALDGGSPPLRGSMIVNVTIQDV 256
+ G++ L LD E + + YSL++ A + S+ + + + DV
Sbjct: 261 NIGP---TSGIVKL----AKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDV 312
Query: 257 NDN 259
NDN
Sbjct: 313 NDN 315
Score = 96.7 bits (241), Expect = 2e-22
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 14/128 (10%)
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTD------DHPSWFQIDSKSGLITMKSNVDCE 408
+I + D + L + TD + + +G + +K D E
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 409 TDPVPK------LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQS--FYNVTIPENK 460
K + N + + V++ + DVND P F + N
Sbjct: 62 ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 121
Query: 461 PKGSCILK 468
P + +
Sbjct: 122 PPNTPVFT 129
Score = 47.8 bits (114), Expect = 3e-06
Identities = 27/135 (20%), Positives = 37/135 (27%), Gaps = 49/135 (36%)
Query: 23 EISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRET 82
EI E + + I A EIR
Sbjct: 222 EIPENQKKDSDIISI-------------------KAKSFA------DREIR--------- 247
Query: 83 RSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSS---YSLVAI------PLSGE 133
Y+L A + G ++ LD E YSL+ S
Sbjct: 248 ---YTLKAQGQGAGTFNIGP--TSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFST- 301
Query: 134 NVRVVVRVIDENDNA 148
+V + +RV D NDNA
Sbjct: 302 SVDLTIRVTDVNDNA 316
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 197 bits (502), Expect = 2e-59
Identities = 89/293 (30%), Positives = 127/293 (43%), Gaps = 49/293 (16%)
Query: 56 GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPL 115
G T I TG+I LDRE ++ Y+L + V
Sbjct: 41 GDGAGTIFQINDITGDIHAIKRLDREEKAEYTL--------TAQAV-------------- 78
Query: 116 DRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAA 175
D ET PL +++V D NDNAP F + PE + T A
Sbjct: 79 DFETNK-------PLEPP-SEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTA 130
Query: 176 KDRDLGIY--NTQ-RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLV 232
D D +Y + + Y+I+ G F + + ++ +DRE EY +V
Sbjct: 131 TDADDPVYGNSAKLVYSILEGQ--PYFSIEP---ETAIIKT---ALPNMDREAKEEYLVV 182
Query: 233 IEALDGG--SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDA 290
I+A D G S L G+ + VT+ DVNDN P F QS Y +VPE+ +GT+I +V A D
Sbjct: 183 IQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQ 242
Query: 291 DAGSNGEVEYSINRRQSDKDGLF----NIDSKSGLIFVNKALDFETKEVHDLV 339
D G N + Y I D LF + ++ G+I + K LDFETK+ + L
Sbjct: 243 DIGENAQSSYDII--DGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLK 293
Score = 185 bits (472), Expect = 5e-55
Identities = 81/338 (23%), Positives = 140/338 (41%), Gaps = 65/338 (19%)
Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREK 207
+ + F+ E + + D D G +Y + F+++ +
Sbjct: 1 SWVWNQMFVL---EEFSGPEPILVGRLHTDLDPGSKKI-KYILSGDGAGTIFQIN---DI 53
Query: 208 DGVLYLDLQINGVLDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQDVNDNQPIFNQS 266
G ++ LDRE EY+L +A+D + PL + +QD+NDN P F
Sbjct: 54 TGDIHA----IKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNG 109
Query: 267 RYFATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKDGLFNIDSKSGLIF 323
Y ATVPE + +GTS+ V ATDAD G++ ++ YSI + F+I+ ++ +I
Sbjct: 110 PYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSI----LEGQPYFSIEPETAIIK 165
Query: 324 V-NKALDFETKEVHDLV------------------------------PRFAVEISSF--D 350
+D E KE + +V P+FA + F
Sbjct: 166 TALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVP 225
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQI----DSKSGLITMKSNVD 406
E GT++ ++ A DQD G N+ +Y + + D + F+I ++ G+I ++ +D
Sbjct: 226 EDVVLGTAIGRVKANDQDIGENAQSSYDIID--GDGTALFEITSDAQAQDGVIRLRKPLD 283
Query: 407 CETDPVPKLTVIATDNGVPA-------LSSSATVLVTI 437
ET L V A + + +ATV + +
Sbjct: 284 FETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 168 bits (427), Expect = 2e-48
Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 47/245 (19%)
Query: 261 PIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSG 320
++NQ + E + + TD D G + +++Y + +F I+ +G
Sbjct: 2 WVWNQ---MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL--SGDGAGTIFQINDITG 55
Query: 321 LIFVNKALDFETKEVHDLV-----------------------------PRFAVE--ISSF 349
I K LD E K + L P F ++
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATV 115
Query: 350 DEIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNV 405
E++ GTSV ++A D D+ G ++ + YS+ E F I+ ++ +I T N+
Sbjct: 116 PEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY----FSIEPETAIIKTALPNM 171
Query: 406 DCETDPVPKLTVIATDNG--VPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKG 463
D E + + A D G LS + T+ VT+ DVNDN P F QS Y+ ++PE+ G
Sbjct: 172 DREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLG 231
Query: 464 SCILK 468
+ I +
Sbjct: 232 TAIGR 236
Score = 98.5 bits (246), Expect = 4e-23
Identities = 55/249 (22%), Positives = 91/249 (36%), Gaps = 59/249 (23%)
Query: 24 ISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETR 83
+ E +GT V + +A D D + N+ ++
Sbjct: 115 VPEMSILGTSVTNV-------------------TATDADDPVYGNSAKLV---------- 145
Query: 84 SSYSLVAIPLSGENVRVVSFYEPGEIRTKVP-LDRETRSSYSLVAI---------PLSGE 133
YS+ L G+ + E I+T +P +DRE + Y +V LSG
Sbjct: 146 --YSI----LEGQPYFSIE-PETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGT 198
Query: 134 NVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSG 193
+ V + D NDN P F PE+ A D+D+G Y+I+ G
Sbjct: 199 -TTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDG 257
Query: 194 NTNNAFRLSSHREKD-GVLYLDLQINGVLDRETIPEYSLVIEALDGGSP-------PLRG 245
+ F ++S + GV+ L LD ET Y+L +EA + P +
Sbjct: 258 DGTALFEITSDAQAQDGVIRL----RKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKD 313
Query: 246 SMIVNVTIQ 254
+ V + ++
Sbjct: 314 TATVKIVVE 322
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 181 bits (462), Expect = 8e-55
Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 19/198 (9%)
Query: 144 ENDNAPTFPSPF--MSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRL 201
+ + P F + F + E+TP T A+D D + + + F +
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSGEEASRFFAV 57
Query: 202 SSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQP 261
GV++L LDRET E+++ D + VN+ + DVNDN P
Sbjct: 58 EP---DTGVVWLR----QPLDRETKSEFTVEFSVSDHQGVI---TRKVNIQVGDVNDNAP 107
Query: 262 IFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGL 321
F+ Y +PEN VGT IF V ATD D G+ G V YS F IDS G+
Sbjct: 108 TFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF----QPPSPFFAIDSARGI 163
Query: 322 IFVNKALDFETKEVHDLV 339
+ V + LD+E + + L
Sbjct: 164 VTVIQELDYEVTQAYQLT 181
Score = 171 bits (436), Expect = 5e-51
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 39/217 (17%)
Query: 257 NDNQPIFNQSRY--FATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN 314
+ P F + + + E+ VG+S+ Q+ A D D N + + + + F
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGV--SGEEASRFFA 56
Query: 315 IDSKSGLIFVNKALDFETKEVHDLV-------------------------PRFAVEISSF 349
++ +G++++ + LD ETK + P F + S
Sbjct: 57 VEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSV 116
Query: 350 D--EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDC 407
E GT +F ++A D D G + YS + + F IDS G++T+ +D
Sbjct: 117 RIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF----FAIDSARGIVTVIQELDY 172
Query: 408 ETDPVPKLTVIATDNGVP-ALSSSATVLVTIHDVNDN 443
E +LTV ATD LS+ A + + I D+ D
Sbjct: 173 EVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 114 bits (288), Expect = 9e-30
Identities = 62/243 (25%), Positives = 95/243 (39%), Gaps = 55/243 (22%)
Query: 22 LEISEGVPVGTRVGFIG--DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
L ISE PVG+ V + D D+ P + + G ++E +TG + + PL
Sbjct: 17 LLISEDTPVGSSVTQLLARDM---DNDPLVFGVS---GEEASRFFAVEPDTGVVWLRQPL 70
Query: 79 DRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVV 138
DRET+S +++ V D + + +V
Sbjct: 71 DRETKSEFTV--------EFSVS--------------DHQGVIT------------RKVN 96
Query: 139 VRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIVSGNTNN 197
++V D NDNAPTF + S+ PENTP + A D DLG Y+ +
Sbjct: 97 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGA-GGSVLYSFQPP--SP 153
Query: 198 AFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG-SPPLRGSMIVNVTIQDV 256
F + S R G++ + LD E Y L + A D + PL + + I D+
Sbjct: 154 FFAIDSAR---GIVTV----IQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDM 206
Query: 257 NDN 259
D
Sbjct: 207 QDM 209
Score = 106 bits (267), Expect = 7e-27
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
E G+SV Q+ A D D N + + + ++ +F ++ +G++ ++ +D ET
Sbjct: 21 EDTPVGSSVTQLLARDMD---NDPLVFGVS--GEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 411 PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+ +D+ + V + + DVNDN P F Y+V IPEN P G+ I
Sbjct: 76 SEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 130
Score = 35.7 bits (83), Expect = 0.016
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 441 NDNEPIFDQSFYN--VTIPENKPKGSCILK 468
+ P F F++ + I E+ P GS + +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQ 31
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 164 bits (417), Expect = 3e-48
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 18/193 (9%)
Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNA----FRLSSHREKDGVLY 212
+I PEN + + L + Y+I + F + + G L
Sbjct: 6 AISCPENEKGEFPKNL-VQIKSNRDKETKVFYSITGQGADKPPVGVFIIE---RETGWLK 61
Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATV 272
+ LDRE I +Y L A+ + M + +T+ D NDN+P F Q + +V
Sbjct: 62 V----TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 273 PENATVGTSIFQVFATDADAGS---NGEVEYSI--NRRQSDKDGLFNIDSKSGLIFV-NK 326
E A GTS+ +V ATDAD N + Y+I + +F ++ +G+I V
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 327 ALDFETKEVHDLV 339
LD E+ + LV
Sbjct: 178 GLDRESYPTYTLV 190
Score = 142 bits (361), Expect = 3e-40
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 39/210 (18%)
Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVN 325
+ PEN G + ++ +V YSI + +DK G+F I+ ++G + V
Sbjct: 5 AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 326 KALDFETKEVHDLV----------------------------PRFAVEI--SSFDEIAEP 355
+ LD E + L P F E+ S E A P
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 356 GTSVFQISAFDQDEGI---NSVITYSLRENTDDHPS--WFQIDSKSGLI-TMKSNVDCET 409
GTSV ++SA D D+ + N+ I Y++ + P F ++ +G+I + S +D E+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Query: 410 DPVPKLTVIATDNGVPALSSSATVLVTIHD 439
P L V A D LS++A ++T+ D
Sbjct: 184 YPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 118 bits (297), Expect = 5e-31
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW--FQIDSKSGLITMKSNVDCETDP 411
E G + + + + YS+ D P F I+ ++G + + +D E
Sbjct: 13 EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIA 72
Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
L A + A+ +++T+ D NDN P F Q + ++ E G+ ++K
Sbjct: 73 KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
Score = 111 bits (280), Expect = 1e-28
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
G ++ PLDRE + Y L + + + +V+ V D+NDN P F
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDP-MEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 160 FPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTN----NAFRLSSHREKDGVLY 212
E +A D D + N Y IVS + N F ++ GV+
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDT---GVIS 173
Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
+ + LDRE+ P Y+LV++A D L + +T++D
Sbjct: 174 V---LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 43.1 bits (102), Expect = 6e-05
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 23 EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVP-VPGSAVDTDLSIEQNTGEIRTK 75
++EG GT V + D + Y IV P ++ ++TG I
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 76 V-PLDRETRSSYSLV 89
LDRE+ +Y+LV
Sbjct: 176 TSGLDRESYPTYTLV 190
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 163 bits (415), Expect = 6e-48
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 150 TFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDG 209
++ + + E T D + D+D G + +Y + + F ++ E G
Sbjct: 1 SWMANQFFLL-EEYTGSDYQYVGKLHSDQDRGD-GSLKYILSGDGAGDLFIIN---ENTG 55
Query: 210 VLYLDLQINGVLDRETIPEYSLVIEALDGGS-PPLRGSMIVNVTIQDVNDNQPIFNQSRY 268
+ LDRE P Y L +A++ + P+ + I D+NDN+PIF + Y
Sbjct: 56 DIQA----TKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVY 111
Query: 269 FATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVN 325
ATVPE A VGT + QV ATDAD G++ +V YSI F+++S++G+I
Sbjct: 112 TATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI----LQGQPYFSVESETGIIKTA 167
Query: 326 KA-LDFETKEVHDLV 339
+D E +E + +V
Sbjct: 168 LLNMDRENREQYQVV 182
Score = 132 bits (334), Expect = 2e-36
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 266 SRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVN 325
+ F + E +D D G +G ++Y + LF I+ +G I
Sbjct: 4 ANQFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYIL--SGDGAGDLFIINENTGDIQAT 60
Query: 326 KALDFETKEVHDLV-----------------------------PRFAVEISSF--DEIAE 354
K LD E K V+ L P F ++ + E+A+
Sbjct: 61 KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMAD 120
Query: 355 PGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNVDCETD 410
GT V Q++A D D+ G ++ + YS+ + +F ++S++G+I T N+D E
Sbjct: 121 VGTFVVQVTATDADDPTYGNSAKVVYSILQGQP----YFSVESETGIIKTALLNMDRENR 176
Query: 411 PVPKLTVIATDNGVP--ALSSSATVLVTIHD 439
++ + A D G LS + TV +T+ D
Sbjct: 177 EQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 108 bits (273), Expect = 9e-28
Identities = 55/239 (23%), Positives = 86/239 (35%), Gaps = 48/239 (20%)
Query: 24 ISEGVPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
+ E + D GD Y++ G I +NTG+I+ LDRE
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRGDGSLKYILS---GDGAGDLFIINENTGDIQATKRLDRE 66
Query: 82 TRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
+ Y L A ++R T P+ E ++++
Sbjct: 67 EKPVYILRA----------------------QAVNRRTGR-------PVEPE-SEFIIKI 96
Query: 142 IDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTNNA 198
D NDN P F + PE A D D Y + + Y+I+ G
Sbjct: 97 HDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ--PY 154
Query: 199 FRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSP--PLRGSMIVNVTIQD 255
F + S + G++ +DRE +Y +VI+A D G L G+ VN+T+ D
Sbjct: 155 FSVES---ETGIIKT---ALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 106 bits (267), Expect = 6e-27
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
E DQD G + + Y L + F I+ +G I +D E
Sbjct: 12 EYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGD--LFIINENTGDIQATKRLDREEK 68
Query: 411 PVPKLTVIATDNGV-PALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
PV L A + + + ++ IHD+NDNEPIF + Y T+PE G+ +++
Sbjct: 69 PVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQ 127
Score = 40.7 bits (96), Expect = 3e-04
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 23 EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKV 76
+ E VGT V + D G+S Y I+ S+E TG I+T +
Sbjct: 114 TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-----QPYFSVESETGIIKTAL 168
Query: 77 -PLDRETRSSYSLV 89
+DRE R Y +V
Sbjct: 169 LNMDRENREQYQVV 182
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 161 bits (410), Expect = 4e-47
Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 157 SIEFPENTPRDVKRTLN--AAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLD 214
I PEN + R + DR G V + FR++ E G + +
Sbjct: 7 PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRIN---ENTGSVSV- 62
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
LDRETI Y L +E D L G + + V + D NDN+PIF + Y V E
Sbjct: 63 ---TRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME 119
Query: 275 NATVGTSIFQVFATDAD--AGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFV---NKA 327
+ GT++ ++ A DAD A N + Y+I ++ DK +F ID + G I
Sbjct: 120 GSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPAL 179
Query: 328 LDFETKE 334
LD ET E
Sbjct: 180 LDRETLE 186
Score = 126 bits (318), Expect = 6e-34
Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 45/212 (21%)
Query: 271 TVPEN--ATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
+PEN + +V +D GS + D G F I+ +G + V + L
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKG--VDQDPKGTFRINENTGSVSVTRTL 66
Query: 329 DFETKEVHDLV----------------------------PRFAVEI--SSFDEIAEPGTS 358
D ET + L P F E + GT+
Sbjct: 67 DRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126
Query: 359 VFQISAFDQDE--GINSVITYSLRENTDDHP--SWFQIDSKSGLIT---MKSNVDCETDP 411
V +++AFD D+ N+++ Y++R+ T D P + F ID + G I + +D ET
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186
Query: 412 VPK--LTVIATDNG--VPALSSSATVLVTIHD 439
PK L + A D L+ +AT + I D
Sbjct: 187 NPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 112 bits (282), Expect = 6e-29
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
+ V ++ D+ EG +T D F+I+ +G +++ +D ET
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGV--DQDPKGTFRINENTGSVSVTRTLDRETI 71
Query: 411 PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+L V TD L + V + D NDN PIF + Y + E P G+ +++
Sbjct: 72 ATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMR 129
Score = 100 bits (252), Expect = 1e-24
Identities = 62/248 (25%), Positives = 87/248 (35%), Gaps = 53/248 (21%)
Query: 22 LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVP 77
+ ++ P VG + D G + + G VD D I +NTG +
Sbjct: 10 IPENQRQPFPRDVGKVVD-SDRPEGSKFRLT---GKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 78 LDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRV 137
LDRET ++Y L D + L G V +
Sbjct: 66 LDRETIATYQLYV----------------------ETTDASGK--------TLEGP-VPL 94
Query: 138 VVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY-NTQ-RYNIVSGN- 194
V VID+NDN P F E +P A D D N RYNI
Sbjct: 95 EVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTP 154
Query: 195 ---TNNAFRLSSHREKDGVLYLDLQINGVLDRETI--PEYSLVIEALDGG--SPPLRGSM 247
+ N F + + G + + +LDRET+ P+Y L+IEA D L G+
Sbjct: 155 DKPSPNMFYIDPEK---GDIVT-VVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTA 210
Query: 248 IVNVTIQD 255
+ I D
Sbjct: 211 TATIVIDD 218
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 160 bits (406), Expect = 1e-46
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 151 FPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGV 210
+ F IE E T D D D G +Y + F + +K G
Sbjct: 4 VWNQFFVIE--EYTGPDPVLVGRLHSDIDSGD-GNIKYILSGEGAGTIFVID---DKSGN 57
Query: 211 LYLDLQINGVLDRETIPEYSLVIEALDGGSP-PLRGSMIVNVTIQDVNDNQPIFNQSRYF 269
++ LDRE +Y+L+ +A+D + PL V +QD+NDN P F Y
Sbjct: 58 IHAT----KTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYH 113
Query: 270 ATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVN- 325
A VPE + VGTS+ QV A+DAD G++ ++ YSI + F++++++G+I
Sbjct: 114 ANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI----LEGQPYFSVEAQTGIIRTAL 169
Query: 326 KALDFETKEVHDLV 339
+D E KE + +V
Sbjct: 170 PNMDREAKEEYHVV 183
Score = 145 bits (369), Expect = 3e-41
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 44/215 (20%)
Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
F + E + +D D+G +G ++Y ++ + +F ID KSG I K
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAG--TIFVIDDKSGNIHATKT 63
Query: 328 LDFETKEVHDLV-----------------------------PRFAVEISSFD--EIAEPG 356
LD E + + L+ P F EI + E + G
Sbjct: 64 LDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123
Query: 357 TSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNVDCETDPV 412
TSV Q++A D D+ G ++ + YS+ E +F +++++G+I T N+D E
Sbjct: 124 TSVIQVTASDADDPTYGNSAKLVYSILEGQP----YFSVEAQTGIIRTALPNMDREAKEE 179
Query: 413 PKLTVIATDNG--VPALSSSATVLVTIHDVNDNEP 445
+ + A D G + LS + V +T+ D ++
Sbjct: 180 YHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 121 bits (305), Expect = 4e-32
Identities = 58/245 (23%), Positives = 87/245 (35%), Gaps = 48/245 (19%)
Query: 24 ISEGVPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
I E + D GD Y++ G T I+ +G I LDRE
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSGDGNIKYILS---GEGAGTIFVIDDKSGNIHATKTLDRE 67
Query: 82 TRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
R+ Y+L+A +DR+T PL +V+V
Sbjct: 68 ERAQYTLMA----------------------QAVDRDTNR-------PLEPP-SEFIVKV 97
Query: 142 IDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTNNA 198
D NDN P F PE + A D D Y + + Y+I+ G
Sbjct: 98 QDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PY 155
Query: 199 FRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGS--PPLRGSMIVNVTIQDV 256
F + + + G++ +DRE EY +VI+A D G L G+ V +T+ D
Sbjct: 156 FSVEA---QTGIIRT---ALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD 209
Query: 257 NDNQP 261
+
Sbjct: 210 YKDDD 214
Score = 109 bits (275), Expect = 6e-28
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
E P + D D G + I Y L F ID KSG I +D E
Sbjct: 13 EYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTI--FVIDDKSGNIHATKTLDREER 69
Query: 411 PVPKLTVIATDNGVPA-LSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
L A D L + +V + D+NDN P F Y+ +PE G+ +++
Sbjct: 70 AQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQ 128
Score = 50.0 bits (120), Expect = 3e-07
Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 41/134 (30%)
Query: 23 EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKV 76
+ E VGT V + D G+S Y I+ S+E TG IRT +
Sbjct: 115 NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-----QPYFSVEAQTGIIRTAL 169
Query: 77 P-LDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
P +DRE + Y +V ++ D LSG
Sbjct: 170 PNMDREAKEEYHVV--------IQAK--------------DMGGHMG------GLSG-TT 200
Query: 136 RVVVRVIDENDNAP 149
+V + + D+ +
Sbjct: 201 KVTITLTDDYKDDD 214
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 159 bits (403), Expect = 3e-46
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 17/191 (8%)
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNA----FRLSSHREKDGVLYL 213
I PEN+ + L D + RY++ + F ++ G L +
Sbjct: 7 INLPENSRGPFPQEL-VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINP---ISGQLSV 62
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
LDRE I + L A+D + + + + + D+NDN+P F + +VP
Sbjct: 63 ----TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 274 ENATVGTSIFQVFATDAD--AGSNGEVEYSI--NRRQSDKDGLFNIDSKSGLIF-VNKAL 328
E + GT + V A DAD NG + Y I + +F I++++G I V L
Sbjct: 119 EGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGL 178
Query: 329 DFETKEVHDLV 339
D E + + L+
Sbjct: 179 DREKVQQYTLI 189
Score = 139 bits (351), Expect = 1e-38
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 41/209 (19%)
Query: 271 TVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKAL 328
+PEN+ G ++ +D N + YS+ +D+ G+F I+ SG + V K L
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 329 DFETKEVHDLV----------------------------PRFAVEI--SSFDEIAEPGTS 358
D E L P F ++ S E ++PGT
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 359 VFQISAFDQDE--GINSVITYSLRENT--DDHPSWFQIDSKSGLI-TMKSNVDCETDPVP 413
V ++A D D+ +N ++ Y + P+ F I++++G I T+ + +D E
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186
Query: 414 KLTVIATDNGVP---ALSSSATVLVTIHD 439
L + ATD LS++AT ++T+ D
Sbjct: 187 TLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 119 bits (300), Expect = 2e-31
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
G ++ D N + YS+ D P F I+ SG +++ +D E
Sbjct: 13 SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 72
Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
L A D + + +++ + D+NDN P F +N ++PE G+ ++
Sbjct: 73 RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMT 129
Score = 102 bits (257), Expect = 2e-25
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 23/165 (13%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
G++ PLDRE + + L A + + +V+ VID NDN P F +
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVEN-PIDIVINVIDMNDNRPEFLHQVWNGS 116
Query: 160 FPENTPRDVKRTLNAAKDRDLGIY-NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYL 213
PE + A D D N RY I+S + N F +++ G +
Sbjct: 117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNE---TGDIIT 173
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPP---LRGSMIVNVTIQD 255
+ LDRE + +Y+L+I+A D P L + +T+ D
Sbjct: 174 ---VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 42.7 bits (101), Expect = 8e-05
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 23 EISEGVPVGTRVGFI----GDGFVGDSGP-PYLIVPVPGSAVDTDL-SIEQNTGEIRTKV 76
+ EG GT V + D +G Y I+ S ++ +I TG+I T
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175
Query: 77 -PLDRETRSSYSLV 89
LDRE Y+L+
Sbjct: 176 AGLDREKVQQYTLI 189
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 155 bits (395), Expect = 3e-45
Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 17/186 (9%)
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQI 217
+ E + + Y I + N F++ DG +Y
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSVGN--KNAMYIIEGESANTIFKVQ---GYDGDIYA---- 57
Query: 218 NGVLDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENA 276
LDRE EY L +D + L + + D+NDN PIF Q + +VPE +
Sbjct: 58 FERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMS 117
Query: 277 TVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETK 333
+GTS+ +V A DAD + V Y I + F +D + LD E++
Sbjct: 118 RLGTSVTKVTAEDADDPTVAGHATVTYQI----IKGNEYFTVDDSGVIFTARADLDRESQ 173
Query: 334 EVHDLV 339
++++
Sbjct: 174 SAYEII 179
Score = 125 bits (315), Expect = 1e-33
Identities = 42/215 (19%), Positives = 88/215 (40%), Gaps = 51/215 (23%)
Query: 262 IFNQSRYFATVPEN--ATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
I+N+ + E + + + ++ ++ N Y I + +F +
Sbjct: 3 IWNR----MHIREEIDSPLPHHVGKLTSSVG----NKNAMYII--EGESANTIFKVQGYD 52
Query: 320 GLIFVNKALDFETKEVHDLV-----------------------------PRFAVEISSFD 350
G I+ + LD E K ++L P F +I +
Sbjct: 53 GDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGS 112
Query: 351 --EIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNV 405
E++ GTSV +++A D D+ ++ +TY + + + +F +D + T ++++
Sbjct: 113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE----YFTVDDSGVIFTARADL 168
Query: 406 DCETDPVPKLTVIATDN-GVPALSSSATVLVTIHD 439
D E+ ++ V A D G+ SS+ATV++ + D
Sbjct: 169 DRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 105 bits (263), Expect = 2e-26
Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 49/240 (20%)
Query: 22 LEISEG--VPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLD 79
+ I E P+ VG + VG+ Y+I G + +T ++ G+I LD
Sbjct: 7 MHIREEIDSPLPHHVGKLTSS-VGNKNAMYIIE---GESANTIFKVQGYDGDIYAFERLD 62
Query: 80 RETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVV 139
RE ++ Y L A + N R L + ++
Sbjct: 63 REKKAEYELTAHIIDRRNNR-----------------------------SLEPP-SKFII 92
Query: 140 RVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTN 196
+V D NDNAP F + PE + T A+D D + Y I+ G N
Sbjct: 93 KVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG--N 150
Query: 197 NAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG-GSPPLRGSMIVNVTIQD 255
F + + LDRE+ Y ++++A D G + V + + D
Sbjct: 151 EYFTVDD---SGVIFTA----RADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 96.6 bits (241), Expect = 2e-23
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 350 DEIAEPGTSVFQISAFDQDEGINSVITYSLR-ENTDDHPSWFQIDSKSGLITMKSNVDCE 408
+ + V ++++ N Y + E+ + F++ G I +D E
Sbjct: 12 EIDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTI---FKVQGYDGDIYAFERLDRE 64
Query: 409 TDPVPKLTVIATD-NGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
+LT D +L + ++ + D+NDN PIF Q +N ++PE G+ +
Sbjct: 65 KKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVT 124
Query: 468 K 468
K
Sbjct: 125 K 125
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 154 bits (391), Expect = 4e-44
Identities = 35/246 (14%), Positives = 70/246 (28%), Gaps = 63/246 (25%)
Query: 263 FNQSRYFATVPENATVGTSIFQVFAT--DADAGSNGEVEYSIN---RRQSDKDGLFNIDS 317
F++ Y+ + + GT + V A + + + + R + ++ I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 318 KSGLIFVNKALDFETKE------------------------------------------V 335
+GL+++ ++LD + E
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 336 HDLVPRFAVEISSFD------------EIAEPGTSVFQISAFDQDEGINSVITYSLRENT 383
+ P + E PGT Q + Y L E
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 384 DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATD-NGVPALSSSATVLVTIHDVND 442
F+ S ++ + +D E +L + T G VT++D +D
Sbjct: 183 GLP---FRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDD 239
Query: 443 NEPIFD 448
+ P F+
Sbjct: 240 SAPEFE 245
Score = 125 bits (315), Expect = 2e-33
Identities = 32/220 (14%), Positives = 57/220 (25%), Gaps = 41/220 (18%)
Query: 151 FPSPFMSIEFPENTPRDVK-RTLNA-AKDRDLGIYNTQRYNI-----VSGNTNNAFRLSS 203
F + + ++A + ++ + NN R+
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSL--------------VIEALDGGSPPLRGSMIV 249
G+LYL LD + + S+ + +
Sbjct: 63 ---DTGLLYL----QRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCA 115
Query: 250 NVTIQDVNDNQPI----------FNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVE 299
V N + P F ++R + EN GT V
Sbjct: 116 RVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVA 175
Query: 300 YSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
Y + + F S + ALD E +E ++LV
Sbjct: 176 YRL---LEGEGLPFRSAPDSLEVSTRWALDREQREKYELV 212
Score = 122 bits (308), Expect = 3e-32
Identities = 41/259 (15%), Positives = 71/259 (27%), Gaps = 43/259 (16%)
Query: 23 EISEGVPVGTRVGFI-------GDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTK 75
++ GT + ++ + G + + I+++TG + +
Sbjct: 11 KLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQ 70
Query: 76 VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
LD + S+ V + F P +R
Sbjct: 71 RSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLRE-----------------GECQWPG 113
Query: 136 RVVVRVIDENDNAP----------TFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNT 185
V N + P FP S EN P + L +
Sbjct: 114 CARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQIS 173
Query: 186 QRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD-GGSPPLR 244
Y ++ G FR + + LDRE +Y LV G+
Sbjct: 174 VAYRLLEGE-GLPFRSAPD---SLEVST----RWALDREQREKYELVAVCTVHAGAREEV 225
Query: 245 GSMIVNVTIQDVNDNQPIF 263
+ VT+ D +D+ P F
Sbjct: 226 VMVPFPVTVYDEDDSAPEF 244
Score = 85.7 bits (212), Expect = 4e-19
Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 29/147 (19%)
Query: 351 EIAEPGTSVFQISAF--DQDEGINSVITYSLRENTD---DHPSWFQIDSKSGLITMKSNV 405
GT + + A +E + + L +W +I +GL+ ++ ++
Sbjct: 14 VDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSL 73
Query: 406 DCET--------DPVPKLTVIATDNGVPA------LSSSATVLVTIHDVNDNEPI----- 446
D + P LTV P V N + P
Sbjct: 74 DHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLK 133
Query: 447 -----FDQSFYNVTIPENKPKGSCILK 468
F ++ + I EN+P G+
Sbjct: 134 PRELCFPETRPSFRIRENRPPGTFHQF 160
Score = 59.9 bits (145), Expect = 2e-10
Identities = 29/136 (21%), Positives = 39/136 (28%), Gaps = 41/136 (30%)
Query: 22 LEISEGVPVGTRVGFIG--DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
I E P GT F F+ Y ++ G ++ E+ T+ L
Sbjct: 146 FRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPF----RSAPDSLEVSTRWAL 201
Query: 79 DRETRSSYSL--VAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVR 136
DRE R Y L V +G V
Sbjct: 202 DREQREKYELVAVCTVHAGAR-------------------------------EEVVM-VP 229
Query: 137 VVVRVIDENDNAPTFP 152
V V DE+D+AP F
Sbjct: 230 FPVTVYDEDDSAPEFE 245
Score = 31.4 bits (71), Expect = 0.52
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 447 FDQSFYNVTIPENKPKGSCILK 468
F + Y + ++ G+ +L
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLY 24
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 122 bits (310), Expect = 5e-34
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
+ NDN+P+F + + +PENA VGTS+ Q+ ATDAD GSN E+ Y + +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 311 G-LFNIDSKSGLIFVNKALDFETKEVHDL 338
LF +++ +GLI V ++LD E +H +
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKV 90
Score = 87.5 bits (218), Expect = 3e-21
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDPVP 413
GTSV Q+ A D D G N+ I Y F +++ +GLIT++ ++D E +
Sbjct: 29 VGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIH 88
Query: 414 KLTVIATDNGVPALSSSATVLVTIHDVN 441
K+TV+A+D + + ATV + + DVN
Sbjct: 89 KVTVLASDGS--STPARATVTINVTDVN 114
Score = 72.1 bits (178), Expect = 1e-15
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 139 VRVIDENDNAPTFPSPFMSIEFPENTPRD-VKRTLNAAKDRDLGIYNTQRY---NIVSGN 194
NDN P F + + PEN P L+A D D+G RY V+
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHAT-DADIGSNAEIRYIFGAQVAPA 60
Query: 195 TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ 254
T F L++ G + + LDRE + + + A DG S P R ++ +NVT
Sbjct: 61 TKRLFALNN---TTG----LITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVT-- 111
Query: 255 DVN 257
DVN
Sbjct: 112 DVN 114
Score = 55.9 bits (136), Expect = 5e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+ NDN P+F + V IPEN P G+ +++
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQ 35
Score = 35.5 bits (83), Expect = 0.007
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 64 SIEQNTGEIRTKVPLDRETRSSYSL 88
++ TG I + LDRE + + +
Sbjct: 66 ALNNTTGLITVQRSLDREETAIHKV 90
Score = 35.5 bits (83), Expect = 0.007
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 107 GEIRTKVPLDRETRSSYSL--VAI---PLSGENVRVVVRVIDEN 145
G I + LDRE + + + +A V + V D N
Sbjct: 72 GLITVQRSLDREETAIHKVTVLASDGSSTPAR-ATVTINVTDVN 114
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 121 bits (305), Expect = 3e-33
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
+ NDN P F +S Y A + EN+ GT I Q+ A D D G NG++EY
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 311 GLFNIDSKSGLIFVNKALDFETKEVHDL 338
L +D SG + V +D E
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRF 89
Score = 116 bits (294), Expect = 1e-31
Identities = 32/91 (35%), Positives = 47/91 (51%)
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
PGT + Q+ A D D G+N I Y T+ ++D SG +++ +D E +
Sbjct: 29 PGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLR 88
Query: 415 LTVIATDNGVPALSSSATVLVTIHDVNDNEP 445
TV+A D G P + ATV++ I D NDN P
Sbjct: 89 FTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 87.1 bits (217), Expect = 5e-21
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 139 VRVIDENDNAPTFPSPFMSIEFPENTPRDVK-RTLNAAKDRDLGIYNTQRYNI--VSGNT 195
NDN+P F + EN+ L AA D D+G+ Y + +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAA-DLDVGVNGQIEYVFGAATESV 60
Query: 196 NNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
RL G L + +DRE + + + A D G PP V + I+D
Sbjct: 61 RRLLRLDE---TSGWLSV----LHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKD 113
Query: 256 VNDNQP 261
NDN P
Sbjct: 114 ENDNVP 119
Score = 55.6 bits (135), Expect = 7e-10
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
+ NDN P F++S Y + EN G+ IL+
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQ 35
Score = 50.2 bits (121), Expect = 6e-08
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 107 GEIRTKVPLDRETRSSYSLV-------AIPLSGENVRVVVRVIDENDNAP 149
G + +DRE + P + VV+ + DENDN P
Sbjct: 71 GWLSVLHRIDREEVNQLRFTVMARDRGQPPKTD-KATVVLNIKDENDNVP 119
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 98.5 bits (246), Expect = 4e-25
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 354 EPGTSVFQISAFDQDEGINSVITYSLR-ENTDDHP-SWFQIDSKSGLITMKSNVDCETDP 411
G ++ N + YS+ D P F I+ SG +++ +D E
Sbjct: 15 SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74
Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF 447
L A D + + +++ + D+NDN P F
Sbjct: 75 RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 79.2 bits (196), Expect = 3e-18
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTN----NAFRLSS 203
+ P I PEN+ + L + RY++ + F ++
Sbjct: 1 GSDWVIP--PINLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIIN- 56
Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIF 263
G L + LDRE I + L A+D + + + + + D+NDN+P F
Sbjct: 57 --PISGQLS----VTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 71.1 bits (175), Expect = 2e-15
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALD 329
+PEN+ G ++ + N + YS+ +D+ G+F I+ SG + V K LD
Sbjct: 11 LPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69
Query: 330 FETKEVHDLV 339
E L
Sbjct: 70 RELIARFHLR 79
Score = 56.5 bits (137), Expect = 2e-10
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTF 151
G++ PLDRE + + L A + + +V+ VID NDN P F
Sbjct: 60 GQLSVTKPLDRELIARFHLRAHAVDINGNQVEN-PIDIVINVIDMNDNRPEF 110
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 93.9 bits (234), Expect = 2e-23
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW--FQIDSKSGLITMKSNVDCE 408
E + +I + D E ITY P + F + +G + + S +D E
Sbjct: 23 EDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81
Query: 409 TDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQ 449
P LT A D + + + + D+NDNEP+F Q
Sbjct: 82 ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 74.3 bits (183), Expect = 2e-16
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 177 DRDLGIYNTQRYNI----VSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLV 232
D Y ++ F + + G L + +LDRE P + L
Sbjct: 37 DLAEERGLKITYKYTGKGITEPPFGIFVFN---KDTGELN----VTSILDREETPFFLLT 89
Query: 233 IEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQ 265
ALD + + + + + D+NDN+P+F Q
Sbjct: 90 GYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 67.4 bits (165), Expect = 7e-14
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVN 325
E+ + I ++ +D ++ Y + + G+F + +G + V
Sbjct: 17 VALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75
Query: 326 KALDFETKEVHDLV 339
LD E L
Sbjct: 76 SILDREETPFFLLT 89
Score = 58.5 bits (142), Expect = 9e-11
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 70 GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFY---EPGEIRTKVPLDRETRSSYSLV 126
+I + + +R + +Y ++ + F + GE+ LDRE + L
Sbjct: 32 AKIHSDLAEERGLKITYKYTGKGITEPPFGI--FVFNKDTGELNVTSILDREETPFFLLT 89
Query: 127 AI-------PLSGENVRVVVRVIDENDNAPTFP 152
+ + + ++V+D NDN P F
Sbjct: 90 GYALDARGNNVEK-PLELRIKVLDINDNEPVFT 121
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 75.5 bits (186), Expect = 5e-17
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
V ++ D+ EG +T + F+I+ +G +++ +D ET +
Sbjct: 18 FPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGT--FRINENTGSVSVTRTLDRETIATYQ 75
Query: 415 LTVIATDNGVPALSSSATVLVTIHD 439
L V TD L + V + D
Sbjct: 76 LYVETTDASGKTLEGPVPLEVIVID 100
Score = 69.3 bits (170), Expect = 8e-15
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 271 TVPEN--ATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
+PEN + +V +D GS + D G F I+ +G + V + L
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKG--VDQDPKGTFRINENTGSVSVTRTL 66
Query: 329 DFETKEVHDLV 339
D ET + L
Sbjct: 67 DRETIATYQLY 77
Score = 66.6 bits (163), Expect = 6e-14
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 158 IEFPENTPRDVKRTLN--AAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDL 215
I PEN + R + DR G V + FR++ E G +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRIN---ENTGSVS--- 61
Query: 216 QINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
+ LDRETI Y L +E D L G + + V + D
Sbjct: 62 -VTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 44.7 bits (106), Expect = 3e-06
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 26 EGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVPLDRE 81
+ P VG + D G + + G VD D I +NTG + LDRE
Sbjct: 14 QRQPFPRDVGKVVD-SDRPEGSKFRLT---GKGVDQDPKGTFRINENTGSVSVTRTLDRE 69
Query: 82 TRSSYSLVA 90
T ++Y L
Sbjct: 70 TIATYQLYV 78
Score = 38.9 bits (91), Expect = 4e-04
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVID 143
G + LDRET ++Y L L G V + V VID
Sbjct: 58 GSVSVTRTLDRETIATYQLYVETTDASGKTLEGP-VPLEVIVID 100
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 74.7 bits (184), Expect = 1e-16
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 340 PRFAVEISSFDEIAE--PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW--FQIDSK 395
P + I E G + ++ + YS+ D P F I+ +
Sbjct: 2 PLGSWVIPPI-SCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 396 SGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD 439
+G + + +D E L A + A+ +L+T+ D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 72.4 bits (178), Expect = 8e-16
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 261 PIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSK 318
P+ + + PEN G + ++ G+V YSI + +D G+F I+ +
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 319 SGLIFVNKALDFETKEVHDL 338
+G + V + LD E + L
Sbjct: 61 TGWLKVTEPLDRERIATYTL 80
Score = 61.2 bits (149), Expect = 5e-12
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 12/112 (10%)
Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTN----NAFRLSS 203
P I PEN + L + Y+I + F +
Sbjct: 1 GPLGSWVIPPISCPENEKGPFPKNL-VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
G L + LDRE I Y+L A+ + M + +T+ D
Sbjct: 60 E---TGWLK----VTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 64 SIEQNTGEIRTKVPLDRETRSSYSLVAI 91
IE+ TG ++ PLDRE ++Y+L +
Sbjct: 56 IIERETGWLKVTEPLDRERIATYTLFSH 83
Score = 40.1 bits (94), Expect = 2e-04
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDE 144
G ++ PLDRE ++Y+L + + + +++ V D+
Sbjct: 62 GWLKVTEPLDRERIATYTLFSHAVSSNGNAVED-PMEILITVTDQ 105
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 71.3 bits (175), Expect = 1e-15
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
SV ++ + EG ++ + D F+I+ SG +++ +D E +L
Sbjct: 18 PRSVGKVIRSEGTEGAKFRLSGKGVDQ--DPKGIFRINEISGDVSVTRPLDREAIANYEL 75
Query: 416 TVIATDNGVPALSSSATVLVTIHD 439
V TD + + +++ D
Sbjct: 76 EVEVTDLSGKIIDGPVRLDISVID 99
Score = 64.8 bits (158), Expect = 3e-13
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 151 FPSPFMSIEFPENTPRDVKRTLNA--AKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKD 208
+P I PEN R++ + G V + FR++ E
Sbjct: 3 LATP---ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRIN---EIS 56
Query: 209 GVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
G + + LDRE I Y L +E D + G + +++++ D
Sbjct: 57 GDVS----VTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 63.6 bits (155), Expect = 7e-13
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 271 TVPENA--TVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
+PEN S+ +V ++ G+ + D G+F I+ SG + V + L
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKG--VDQDPKGIFRINEISGDVSVTRPL 65
Query: 329 DFETKEVHDL 338
D E ++L
Sbjct: 66 DREAIANYEL 75
Score = 40.9 bits (96), Expect = 7e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 43 GDSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVPLDRETRSSYSLVA 90
G G + + G VD D I + +G++ PLDRE ++Y L
Sbjct: 29 GTEGAKFRLS---GKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEV 77
Score = 36.2 bits (84), Expect = 0.003
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVID 143
G++ PLDRE ++Y L + G VR+ + VID
Sbjct: 57 GDVSVTRPLDREAIANYELEVEVTDLSGKIIDGP-VRLDISVID 99
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 70.5 bits (173), Expect = 2e-15
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
V ++ D+ G + + F+I+ SG +++ +D E P +L
Sbjct: 18 PKIVGRVVVSDRIPGSKIKLYGKGV--DQEPKGIFKINENSGEVSVTKALDREAIPSYQL 75
Query: 416 TVIATDNGVPALSSSATVLVTIHD 439
V TD + + + + D
Sbjct: 76 QVETTDENGKTIEGPVDLEILVID 99
Score = 69.3 bits (170), Expect = 7e-15
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 157 SIEFPENTPRDVKRTLN--AAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLD 214
SI PEN + + DR G V F+++ E G +
Sbjct: 6 SISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKIN---ENSGEVS-- 60
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
+ LDRE IP Y L +E D + G + + + + D
Sbjct: 61 --VTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 67.8 bits (166), Expect = 2e-14
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 271 TVPENAT--VGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
++PEN + +V +D GS ++ + G+F I+ SG + V KAL
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKG--VDQEPKGIFKINENSGEVSVTKAL 65
Query: 329 DFETKEVHDLV 339
D E + L
Sbjct: 66 DREAIPSYQLQ 76
Score = 41.6 bits (98), Expect = 4e-05
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 44 DSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVPLDRETRSSYSLVAI 91
G + G VD + I +N+GE+ LDRE SY L
Sbjct: 30 IPGSKIKLY---GKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVE 78
Score = 37.7 bits (88), Expect = 8e-04
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVID 143
GE+ LDRE SY L + G V + + VID
Sbjct: 57 GEVSVTKALDREAIPSYQLQVETTDENGKTIEG-PVDLEILVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 68.2 bits (167), Expect = 2e-14
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
E D D G + I Y L F ID +G I +D E
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAG--IVFTIDDTTGDIHAIQRLDREER 69
Query: 411 PVPKLTVIATDNGV-PALSSSATVLVTIHD 439
L A D + + ++ I D
Sbjct: 70 SQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 62.4 bits (152), Expect = 2e-12
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 262 IFNQSRYFATVPENAT-VGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSG 320
++NQ V E T +D D G +G ++Y + +F ID +G
Sbjct: 4 VWNQ----FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYIL--SGEGAGIVFTIDDTTG 56
Query: 321 LIFVNKALDFETKEVHDLV 339
I + LD E + + L
Sbjct: 57 DIHAIQRLDREERSQYTLR 75
Score = 57.0 bits (138), Expect = 1e-10
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGV 220
E T D D D G + +Y + F + + G ++
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG--DGSIKYILSGEGAGIVFTID---DTTGDIHA----IQR 63
Query: 221 LDRETIPEYSLVIEALDGGS-PPLRGSMIVNVTIQD 255
LDRE +Y+L +ALD + P+ + IQD
Sbjct: 64 LDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 43.1 bits (102), Expect = 1e-05
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 56 GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVA 90
G +I+ TG+I LDRE RS Y+L A
Sbjct: 42 GEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRA 76
Score = 38.5 bits (90), Expect = 4e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI--------PLSGENVRVVVRVID 143
G+I LDRE RS Y+L A P+ E ++++ D
Sbjct: 56 GDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPE-SEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 61.3 bits (149), Expect = 5e-12
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 346 ISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNV 405
+ +E + P + D D G + I Y L + + FQI+ +G I +
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAG--TIFQINDITGDIHAIKRL 63
Query: 406 DCETDPVPKLTVIATD-NGVPALSSSATVLVTIHD 439
D E LT A D L + ++ + D
Sbjct: 64 DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 57.8 bits (140), Expect = 6e-11
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 262 IFNQSRYFATVPENATV-GTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSG 320
++NQ V E + + TD D G + +++Y + +F I+ +G
Sbjct: 3 VWNQ----MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL--SGDGAGTIFQINDITG 55
Query: 321 LIFVNKALDFETKEVHDLV 339
I K LD E K + L
Sbjct: 56 DIHAIKRLDREEKAEYTLT 74
Score = 57.4 bits (139), Expect = 1e-10
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 153 SPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLY 212
+ +E E + + D D G +Y + F+++ + G ++
Sbjct: 5 NQMFVLE--EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQIN---DITGDIH 58
Query: 213 LDLQINGVLDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQD 255
LDRE EY+L +A+D + PL + +QD
Sbjct: 59 A----IKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 42.0 bits (99), Expect = 3e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 56 GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVA 90
G T I TG+I LDRE ++ Y+L A
Sbjct: 41 GDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTA 75
Score = 37.0 bits (86), Expect = 0.001
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 107 GEIRTKVPLDRETRSSYSLVAI--------PLSGENVRVVVRVID 143
G+I LDRE ++ Y+L A PL +++V D
Sbjct: 55 GDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPP-SEFIIKVQD 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 5e-12
Identities = 86/576 (14%), Positives = 174/576 (30%), Gaps = 171/576 (29%)
Query: 2 RLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVP----GS 57
RL W L + + E V F+ + + +L+ P+
Sbjct: 63 GTLRLFWTLLS----------KQEEMVQK-----FVEEVLRINY--KFLMSPIKTEQRQP 105
Query: 58 AVDTDLSIEQ-----NTGEIRTKVPLDRE------TRSSYSL-----VAI---PLSGENV 98
++ T + IEQ N ++ K + R ++ L V I SG+
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 99 RVVSFYEPGEIRTKVP-----LD-RETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFP 152
+ +++ K+ L+ + S +++ E ++ ++ ID N +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDPNWTSR--S 217
Query: 153 SPFMSIEFPENTPRDVKRTLNAAKD--RDL----GIYNTQRYN---------IVSGNTNN 197
+I+ ++ + R L +K L + N + +N + +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 198 AFRLSSHREKDGVLYLDLQINGVLDRET---------IPEYSLVIEALDGGSPPLRGSMI 248
LS+ + LD + E L E L P R S+I
Sbjct: 278 TDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSII 333
Query: 249 ---------------------VNVTIQ-DVNDNQPIFNQSRY--FATVPENATVGTSIFQ 284
+ I+ +N +P + + + P +A + T +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 285 VFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETK-------EVHD 337
+ D +V +N + K L K I + ++ E K +H
Sbjct: 394 LIWFDVI---KSDVMVVVN--KLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALHR 447
Query: 338 -LVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLR-----ENTDDHPSWFQ 391
+V + + +FD + D+ S I + L+ E F
Sbjct: 448 SIVDHYNI-PKTFDS--------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 392 ----IDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF 447
++ K + A ++S ++L T+ +
Sbjct: 499 DFRFLEQK---------------------IRHDS---TAWNASGSILNTLQQLK------ 528
Query: 448 DQSFYNVTIPENKPKGSCILKSIFYDIFNISEHSFK 483
FY I +N PK ++ +I + I E+
Sbjct: 529 ---FYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Score = 39.1 bits (90), Expect = 0.004
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 55/171 (32%)
Query: 296 GEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEP 355
GE +Y KD L + FV+ +F+ K+V D+ P+ + D I
Sbjct: 12 GEHQYQ------YKDILSVFEDA----FVD---NFDCKDVQDM-PKSILSKEEIDHIIMS 57
Query: 356 GTSVFQISA-FD-----QDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCET 409
+V F Q+E + + LR N +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----FL------------------- 94
Query: 410 DPVPKLTVIATDNGVPALSSSATVLVTIHDV--NDNEPIFDQSFYNVTIPE 458
++ I T+ P++ + + + D NDN+ F + YNV+ +
Sbjct: 95 -----MSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQV-FAK--YNVSRLQ 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 4e-08
Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 86/219 (39%)
Query: 5 RLLWLLAAVAADEHLRD------LEISEGVPVGTRVGFIG-------------------D 39
+ +W AD H +D L+I PV + F G D
Sbjct: 1643 QDVWN----RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 40 GFVGDSGPPYLIVPVPGSAV-----DTDLSIEQNT------------GEIRTK--VPLDR 80
G + + + + ++ LS Q T ++++K +P D
Sbjct: 1699 GKL-KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 81 --------ETRSSYS-LVA----IPLSGENVRVVSFYEPGE-IRTKVPLDRETRSSYSLV 126
E Y+ L + + + V VV + G ++ VP D RS+Y ++
Sbjct: 1758 TFAGHSLGE----YAALASLADVMSIE-SLVEVV--FYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 127 AI-P------LSGENVRVVVRVIDE---------NDNAP 149
AI P S E ++ VV + + N N
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Score = 53.9 bits (129), Expect = 9e-08
Identities = 81/437 (18%), Positives = 136/437 (31%), Gaps = 139/437 (31%)
Query: 16 DEHLRDL-EISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTG---- 70
+E LRDL + +GD + S + + + +D + Q G
Sbjct: 171 EE-LRDLYQTYHV--------LVGD-LIKFSAE--TLSELIRTTLDAEKVFTQ--GLNIL 216
Query: 71 ---EIRTKVPLDRETRSSYSLVAIPLSG-------ENVRVVSFYEPGEIRTKVPLDRETR 120
E + P D++ S ++ PL G + + PGE+R+ L T
Sbjct: 217 EWLENPSNTP-DKDYLLS-IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY--LKGATG 272
Query: 121 SSYSLV---AIPLSG------ENVRVVVRVI----------------------DENDNAP 149
S LV AI + +VR + V+ D +N
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 150 TFPSPFMSIEFPENTPRD-----VKRTLNA--AKDRDLGI--YNTQRYNIVSGNTNNAFR 200
PSP +SI N ++ V +T N+ + + I N + +VSG + +
Sbjct: 333 GVPSPMLSIS---NLTQEQVQDYVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 201 LSSHREKDGVLYLDLQINGVLDRETIPEYS----------LVIEALDGG---SPPLRGSM 247
L+ K + LD+ IP +S L + + S L +
Sbjct: 389 LNLTLRK-------AKAPSGLDQSRIP-FSERKLKFSNRFLPVAS----PFHSHLLVPA- 435
Query: 248 IVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQS 307
++ +D+ N FN +P V+ T +G + R
Sbjct: 436 -SDLINKDLVKNNVSFNAKD--IQIP-----------VYDTF-----DGS-----DLRVL 471
Query: 308 DKDGLFNI-DSKSGLIF---VN--KALDFETKEVHDLVPRFAVEISS-FDEIAEPGTSVF 360
I D I V F+ + D P A + + GT V
Sbjct: 472 SGSISERIVD----CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD-GTGVR 526
Query: 361 QISAFDQDEGINSVITY 377
I A D + +
Sbjct: 527 VIVAGTLDINPDDDYGF 543
Score = 48.9 bits (116), Expect = 3e-06
Identities = 79/495 (15%), Positives = 130/495 (26%), Gaps = 188/495 (37%)
Query: 19 LRDLEISEG-----VPVGTRVGFIG----DGFVGDSGPPYLIVPVPGSAVDTDLS----- 64
R L +S G + V T FI + F L P G A D + +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKI-----LPEPTEGFAADDEPTTPAEL 60
Query: 65 -----------IEQNTGEIRTKVPLD---RETRSSYSLVAIPLSGENVRVVSFYEPGEIR 110
+E + +V L+ E + Y L G ++ ++ E
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCY------LEGNDIHALAAKLLQEND 113
Query: 111 TKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKR 170
T + +E +Y + A ++ S
Sbjct: 114 TTLVKTKELIKNY-ITARIMAKRPFD------------KKSNSAL--------------- 145
Query: 171 TLNAAKDRDLGIYNT---QRYNIVSGNTNNAFR-LSSHREKDGVLYLDLQINGVLDRETI 226
A + + + Q GNT++ F L R+ LY +T
Sbjct: 146 -FRAVGEGNAQLVAIFGGQ------GNTDDYFEEL---RD----LY-----------QT- 179
Query: 227 PEY-SLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQ----------------SRYF 269
Y LV + + + L I+ D + +F Q Y
Sbjct: 180 --YHVLVGDLIKFSAETLSE------LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 270 ATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD-GLFNIDSKSGLIFVNKAL 328
++P S + Y + + G G
Sbjct: 232 LSIP------ISCPLIGVIQL-------AHYVVTAKLLGFTPGELR-SYLKGA------- 270
Query: 329 DFETKEVHDLVPRFAVEIS------SFDEIAEPGTSV-FQISAFDQDEGINSVITYSLRE 381
T LV AV I+ SF +V F I G+ Y
Sbjct: 271 ---TGHSQGLVT--AVAIAETDSWESFFVSVRKAITVLFFI-------GVRCYEAYP--- 315
Query: 382 NTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVN 441
NT PS + ++ E P P L++ + + V ++ N
Sbjct: 316 NTSLPPSILEDSLENN----------EGVPSPMLSIS----NL----TQEQVQDYVNKTN 357
Query: 442 DNEPIFDQ---SFYN 453
+ P Q S N
Sbjct: 358 SHLPAGKQVEISLVN 372
Score = 48.1 bits (114), Expect = 6e-06
Identities = 54/322 (16%), Positives = 92/322 (28%), Gaps = 135/322 (41%)
Query: 156 MSIEFPENTP--RDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH--------- 204
M ++ + + +DV N A + Y +IV NN L+ H
Sbjct: 1631 MGMDLYKTSKAAQDV---WNRADNHFKDTYGFSILDIV---INNPVNLTIHFGGEKGKRI 1684
Query: 205 REKDGVLYLDLQINGVLDRETI-PEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDN-QP- 261
RE + + ++G L E I E + + S +G + + T QP
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLL--SAT-----QFTQPA 1735
Query: 262 IFNQSRYFATVPENATVGTSIFQV----FATDAD---AG-SNGEVEYSINRRQSDKDGLF 313
+ + + F+ AD AG S GE Y+ L
Sbjct: 1736 LT-------------LMEKAAFEDLKSKGLIPADATFAGHSLGE--YA---------ALA 1771
Query: 314 NIDSKSGLIFVNKALDFET---------KEVHDLVPRFAVEISSFDEIA-EPGTSVFQIS 363
S + + E+ + VPR + S++ IA PG +++
Sbjct: 1772 ---SLAD------VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG----RVA 1818
Query: 364 AFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG 423
A E + V+ ++ ++G
Sbjct: 1819 ASFSQEALQYVVE--------------RVGKRTGW------------------------- 1839
Query: 424 VPALSSSATVLVTIHDVNDNEP 445
LV I VN N
Sbjct: 1840 ----------LVEI--VNYNVE 1849
Score = 33.9 bits (77), Expect = 0.14
Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 65/224 (29%)
Query: 294 SNGEVEYSI--------NRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRF--- 342
S+G +E+ + Q + + + A D E +LV +F
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE----GFAADDEPTTPAELVGKFLGY 67
Query: 343 ------AVEISSFDEIAEPGTSVFQISAFDQDEGINSVI-------------------TY 377
++ FD++ + F+ + + + I+++ Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 378 ------SLRENTDDHPS-WFQ--IDSKSGLITM---KSNVDCETDPVPKLTVI-ATDNGV 424
+ R S F+ + + L+ + + N D D +L + T + +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---DYFEELRDLYQTYHVL 183
Query: 425 --PALSSSATVLVT-IHDVNDNEPIFDQSFYNV----TIPENKP 461
+ SA L I D E +F Q N+ P N P
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTP 226
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 38.8 bits (91), Expect = 6e-04
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 173 NAAKDRDLGIYN--TQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETI---- 226
N AKD L + T+ I+S +L +K G L + LDRE +
Sbjct: 29 NLAKDLGLSLRELITRGAQILSKGNKQLLQLE---QKSGNLL----LKEKLDREELCGST 81
Query: 227 PEYSLVIEALDGGSPPLRGSMI-VNVTIQDVNDNQPIF 263
L + L P++ I + +QDVND+ P F
Sbjct: 82 NPCILHFQVLLKS--PVQ--FIQGEIQLQDVNDHAPEF 115
Score = 36.5 bits (85), Expect = 0.004
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 93 LSGENVRVVSFYEP---------GEIRTKVPLDRET---RSSYSLVAIPLSGEN----VR 136
L +++S G + K LDRE ++ ++ + ++ ++
Sbjct: 41 LITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQFIQ 100
Query: 137 VVVRVIDENDNAPTFPSPFMSIE 159
+++ D ND+AP F
Sbjct: 101 GEIQLQDVNDHAPEFMEDESGPS 123
Score = 31.1 bits (71), Expect = 0.28
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDC 407
S E + G+ V ++ D + +IT + + + Q++ KSG + +K +D
Sbjct: 16 SVLEETDRGSLVGNLAK-DLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDR 74
Query: 408 E-----TDP-VPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF 447
E T+P + V+ P + + DVND+ P F
Sbjct: 75 EELCGSTNPCILHFQVLLKS---PVQFIQGEIQLQ--DVNDHAPEF 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.028
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 408 ETDPVPKLT----VIATDNGVPALSSSATV 433
E + KL + A D+ PAL+ AT+
Sbjct: 18 EKQALKKLQASLKLYADDSA-PALAIKATM 46
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 33.3 bits (77), Expect = 0.036
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 173 NAAKDRDLGIYN--TQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETI---- 226
A+D L + + + + S + + ++ ++G+L+ +N +DRE +
Sbjct: 21 RIAQDLGLELTELVPRLFRVASKDRGDLLEVN---LQNGILF----VNSRIDREELCGRS 73
Query: 227 PEYSLVIEALDGGSPPLRGSMI-VNVTIQDVNDN 259
E S+ +E + PL+ + V V ++D+NDN
Sbjct: 74 AECSIHLEVIVDR--PLQ--VFHVEVEVRDINDN 103
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 32.5 bits (73), Expect = 0.13
Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 239 GSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEV 298
S + ++ + F + Y A +P++ G + V ++ +V
Sbjct: 12 SSGHIDDDDKHMEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNV--KFSNCNRKRKV 69
Query: 299 EYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
+Y +S + F +D + G ++ ++ ++ L+
Sbjct: 70 QY-----ESSEPADFKVD-EDGTVYAVRSFPLTAEQAKFLI 104
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 30.4 bits (68), Expect = 1.3
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 410 DPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENK----PKGSC 465
D + ++ I + +P + + A + + + + F V +K P G
Sbjct: 248 DDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGG 307
Query: 466 IL 467
++
Sbjct: 308 LV 309
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 29.3 bits (65), Expect = 3.0
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 18/66 (27%)
Query: 388 SWFQIDSKSGLITMKSNVDCETDPVPKLTVIA---------------TDNGVPALSSSAT 432
SW + +V V DNG P L +
Sbjct: 375 SWSHYGEAD---SYSGSVSISNSSSASANVQIPSNAGGKDIHILLTLRDNGSPNLYAYRR 431
Query: 433 VLVTIH 438
V++ +
Sbjct: 432 VVINVQ 437
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 28.9 bits (65), Expect = 3.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 110 RTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
P R + S G NVRVVVRV
Sbjct: 15 NVSTPTLRPRDDTASSFVSKDPGANVRVVVRV 46
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 27.2 bits (61), Expect = 5.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 9 LLAAVAADEHLRDLEISEGVPVGTRV 34
L+ A D + + + E VPVG RV
Sbjct: 86 LILAETEDGKVYLIPVPEEVPVGARV 111
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 27.9 bits (63), Expect = 8.8
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 54 VPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSY--------SLVAIPLSGENVRVVSFYE 105
VPG A E+ G V ++RE + Y V + G V E
Sbjct: 714 VPGVA---SALAERLEGGRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGET--VE 768
Query: 106 PGEIRTKVP--LDRETRSS 122
G R + + R S
Sbjct: 769 -GIARYPINLRYPQSWRDS 786
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,264,241
Number of extensions: 443843
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1109
Number of HSP's successfully gapped: 187
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)