RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8629
(483 letters)
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 72.1 bits (176), Expect = 2e-16
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
E G ++ ++ + + YS+ D+P F+I+ ++G + + +D E
Sbjct: 13 ERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYD 72
Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHD 439
L+ A + + + + D
Sbjct: 73 KYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 49.8 bits (118), Expect = 2e-08
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 271 TVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKAL 328
V EN G ++ ++ +V YSI + +D G+F I+ ++G + V + L
Sbjct: 8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 329 DFETKEVH 336
D E + +
Sbjct: 67 DREEYDKY 74
Score = 43.6 bits (102), Expect = 3e-06
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNN-AFRLSSHREKDGVLYLDLQ 216
I+ EN + L + +N Y+I +N + + G + +
Sbjct: 7 IKVSENERGPFPKRLVQI-KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
++ RE +Y L A+ P+ M + + + D
Sbjct: 66 LD----REEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 70.9 bits (173), Expect = 8e-16
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
E G + ++ + YS+ D P F I+ ++G + + +D E
Sbjct: 16 EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIA 75
Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHD 439
L A + A+ +L+T+ D
Sbjct: 76 TYTLFSHAVSSNGNAVEDPMEILITVTD 103
Score = 51.7 bits (123), Expect = 5e-09
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 261 PIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSK 318
P+ + + PEN G + ++ G+V YSI + +D G+F I+ +
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 319 SGLIFVNKALDFETKEVH 336
+G + V + LD E +
Sbjct: 60 TGWLKVTEPLDRERIATY 77
Score = 46.6 bits (110), Expect = 3e-07
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTN-NAFRLSSHREKDGVLYLDLQ 216
I PEN + L + Y+I + + + G L +
Sbjct: 10 ISCPENEKGPFPKNLVQI-KSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 68
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
++ RE I Y+L A+ + M + +T+ D
Sbjct: 69 LD----RERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 68.3 bits (166), Expect = 6e-15
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
G ++ N + YS+ D P F I+ SG +++ +D E
Sbjct: 15 SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74
Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHD 439
L A D + + +++ + D
Sbjct: 75 RFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 47.5 bits (112), Expect = 1e-07
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGN-TNNAFRLSSHREKDGVLYLDLQ 216
I PEN+ + L + RY++ + G L +
Sbjct: 9 INLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
++ RE I + L A+D + + + + + D
Sbjct: 68 LD----RELIARFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 44.8 bits (105), Expect = 1e-06
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 271 TVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKAL 328
+PEN+ G ++ + N + YS+ +D+ G+F I+ SG + V K L
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 329 DFETKEVHDLV 339
D E L
Sbjct: 69 DRELIARFHLR 79
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 65.5 bits (158), Expect = 8e-14
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 144 ENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIVSGNTNNAFR 200
+NDN P F E + +A D D I + Y+I+ +
Sbjct: 1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 60
Query: 201 LSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
+ + + I LDRE PEY+L ++A D L + I D
Sbjct: 61 --NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 52.0 bits (123), Expect = 4e-09
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 337 DLVPRFAVEISSF--DEIAEPGTSVFQISAFDQDEGINS---VITYSLRENTDDHP--SW 389
D P+F ++ E +PGT V +SA D+D+ I+S V++YS+ + + P +
Sbjct: 3 DNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNL 62
Query: 390 FQIDSKSGLITMKSN-VDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD 439
F I+ ++G+I++ +D E P LTV ATD LS ++ I D
Sbjct: 63 FTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 47.7 bits (112), Expect = 1e-07
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKD--G 311
NDN+P F Q + +V E GT + V ATD D NG + YSI ++ ++
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 312 LFNIDSKSGLI-FVNKALDFETKEVHDLV 339
LF I+ ++G+I + LD E + L
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLT 90
Score = 40.4 bits (93), Expect = 5e-05
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCIL 467
NDN P F Q + ++ E G+ ++
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVM 28
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 64.6 bits (156), Expect = 2e-13
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
NDNAP F + PEN + L+ G Q + N F +++
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDG---GSPPLRGSMIVNVTIQDV 256
E + L LD E +Y L I + P + V VT++DV
Sbjct: 62 PESN---QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 51.2 bits (121), Expect = 1e-08
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 337 DLVPRFAVEISSFDEIAE--PGTSVFQISAFDQDEGINSVITYSLRENTDDHPS---WFQ 391
D P F + + + E G V ++S D D + ++
Sbjct: 3 DNAPIFDPKTYTA-LVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 392 IDSKSGLITMKSNVDCETDPVPKLTVIATDN---GVPALSSSATVLVTIHDV 440
+S G++T +D E L + + VP +S+ATV VT+ DV
Sbjct: 62 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 48.1 bits (113), Expect = 1e-07
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGL---F 313
NDN PIF+ Y A VPEN +G + ++ TD D + R ++
Sbjct: 2 NDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 314 NIDSKSGLIFVNKALDFETKEVHDLV 339
+ +S G++ K LDFE ++ + L
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQ 86
Score = 37.7 bits (86), Expect = 5e-04
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEH 480
NDN PIFD Y +PEN+ G + + D+
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTP 40
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 63.5 bits (153), Expect = 4e-13
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Query: 258 DNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS 317
+ P F + V E+ + G I + A D D ++ Y +D ++
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF---IGNDPARWLTVNK 57
Query: 318 KSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFD 366
+G++ N LD E++ V + + ++ GT + D
Sbjct: 58 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106
Score = 63.1 bits (152), Expect = 5e-13
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 146 DNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHR 205
+ AP F ++ E+ R K A+D D + + + +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQ-QIQKLSYFIGNDPARWL---TVN 56
Query: 206 EKDGVLYLDLQINGVLDRETI----PEYSLVIEALDGGSPPLRGSMIVNVTIQDV 256
+ +G++ NG LDRE+ Y++++ D G G+ + + + DV
Sbjct: 57 KDNGIVTG----NGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 61.2 bits (147), Expect = 2e-12
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDC 407
E G + + A D D+ ++Y +D W ++ +G++T N+D
Sbjct: 14 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYF---IGNDPARWLTVNKDNGIVTGNGNLDR 70
Query: 408 ETDPVPK----LTVIATDNGVPALSSSATVLVTIHDV 440
E++ V + ++ TD+GV + + T+++ + DV
Sbjct: 71 ESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 38.0 bits (87), Expect = 3e-04
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 442 DNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
+ P F + V + E+ +G I+ + D
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQD 32
Score = 29.6 bits (65), Expect = 0.32
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 22 LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
+++SE + G ++ + D + G+ L++ ++ G + LDRE
Sbjct: 13 VDVSEDLSRGEKIISL-VAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRE 71
Query: 82 T 82
+
Sbjct: 72 S 72
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 61.3 bits (147), Expect = 3e-12
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYN---TQRYNIVSGNTNNAFRL 201
NDN P F E +A D D + Y IVS + +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK- 59
Query: 202 SSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
+ + + + LDRE+ P Y+LV++A D L + +T++D
Sbjct: 60 -NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 53.6 bits (127), Expect = 1e-09
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 337 DLVPRFAVEISSF--DEIAEPGTSVFQISAFDQDEGI---NSVITYSLRENTDD--HPSW 389
D P F E+ E A PGTSV ++SA D D+ + N+ I Y++ + H +
Sbjct: 2 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 61
Query: 390 FQIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD 439
F ++ +G+I + S +D E+ P L V A D LS++A ++T+ D
Sbjct: 62 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 48.6 bits (114), Expect = 8e-08
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS---NGEVEYSINRRQSDKDG-- 311
NDN+P F Q + +V E A GTS+ +V ATDAD N + Y+I + +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 312 LFNIDSKSGLIFVNKAL-DFETKEVHDLV 339
+F ++ +G+I V + D E+ + LV
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLV 89
Score = 40.1 bits (92), Expect = 6e-05
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEH 480
NDN P F Q + ++ E G+ ++K D +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 40
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 59.0 bits (141), Expect = 2e-11
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
NDN P F + PE + A D D + + +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPP---LRGSMIVNVTIQD 255
+ + + LDRE + +Y+L+I+A D P L + +T+ D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 51.3 bits (121), Expect = 8e-09
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSI----NRRQSDKDGL 312
NDN+P F + +VPE + GT + V A DAD + + +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 313 FNIDSKSGLIFVNKAL-DFETKEVHDLV 339
F I++++G I A D E + + L+
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLI 88
Score = 47.0 bits (110), Expect = 3e-07
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 337 DLVPRFAVEISSF--DEIAEPGTSVFQISAFDQDEG--INSVITYSLRENTD--DHPSWF 390
D P F ++ + E ++PGT V ++A D D+ +N ++ Y + P+ F
Sbjct: 2 DNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMF 61
Query: 391 QIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNGVP---ALSSSATVLVTIHD 439
I++++G I T+ + +D E L + ATD LS++AT ++T+ D
Sbjct: 62 TINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 40.9 bits (94), Expect = 4e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFN 476
NDN P F +N ++PE G+ ++ D +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADD 36
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 53.5 bits (127), Expect = 2e-09
Identities = 7/82 (8%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 255 DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN 314
++ + F + Y A +P++ G + V ++ + + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN--------RKRKVQYESSEPADF 56
Query: 315 IDSKSGLIFVNKALDFETKEVH 336
+ G ++ ++ ++
Sbjct: 57 KVDEDGTVYAVRSFPLTAEQAK 78
Score = 50.8 bits (120), Expect = 2e-08
Identities = 12/143 (8%), Positives = 30/143 (20%), Gaps = 16/143 (11%)
Query: 143 DENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLS 202
+ FP S P++ + + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSE------------ 52
Query: 203 SHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPI 262
+ + +I A D + + + VN++ + +P+
Sbjct: 53 -PADFKVDEDGTVYAVRSFPLTAEQ-AKFLIYAQDKETQE-KWQVAVNLSREPTLTEEPM 109
Query: 263 F-NQSRYFATVPENATVGTSIFQ 284
P + Q
Sbjct: 110 KEPHEIEEIVFPRQLAKHSGALQ 132
Score = 48.8 bits (115), Expect = 9e-08
Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 13/140 (9%)
Query: 332 TKEVHDLVPRFAVEISSFD--EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW 389
+ E+ F ++ S + G + + + + S +
Sbjct: 3 SGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDG 62
Query: 390 FQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFD- 448
+ + + K + A D V ++ EP+ +
Sbjct: 63 T--------VYAVRSFPLTAEQA-KFLIYAQDKETQEKWQV-AVNLSREPTLTEEPMKEP 112
Query: 449 QSFYNVTIPENKPKGSCILK 468
+ P K S L+
Sbjct: 113 HEIEEIVFPRQLAKHSGALQ 132
Score = 45.4 bits (106), Expect = 1e-06
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 439 DVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
++ + F + Y+ +P++ +G +L F +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSN 39
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 52.4 bits (124), Expect = 3e-09
Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 13/117 (11%)
Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
NDN P + P T D D+ +S ++ ++
Sbjct: 1 NDNGPVPSPR--VFTMCDQNPEPQVLT---ISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQP 261
+ + +YS+ + D + P + V
Sbjct: 56 S------KGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVC--SCEGKAI 104
Score = 40.8 bits (94), Expect = 4e-05
Identities = 10/95 (10%), Positives = 22/95 (23%), Gaps = 3/95 (3%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
+ + ++ D D N+ + +W G + S
Sbjct: 13 TMCDQNPEPQVLTISDADIPPNTYPYKV-SLSHGSDLTWKAELDSKGTSMLLSPTQQLKK 71
Query: 411 PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEP 445
+ V+ +D V T+
Sbjct: 72 GDYSIYVLLSDAQNN--PQLTVVNATVCSCEGKAI 104
Score = 32.7 bits (73), Expect = 0.021
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDAD 291
NDN P+ + + T+ + + +DAD
Sbjct: 1 NDNGPVPSPRVF--TMCDQNPEPQ---VLTISDAD 30
Score = 29.7 bits (65), Expect = 0.28
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 441 NDNEPIFDQSFYNVTIPENKPKG 463
NDN P+ T+ + P+
Sbjct: 1 NDNGPVPSP--RVFTMCDQNPEP 21
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 27.2 bits (59), Expect = 3.6
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 258 DNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS 294
DN+ SRY+ VPE VG + + D G
Sbjct: 197 DNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGE 233
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 127
Score = 26.0 bits (57), Expect = 6.4
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 164 TPRDVKRTLNAAKDRDLGIYNTQRYNI-VSGNTNNAFRLSSHREKDGVLYLDL 215
+ + + N + V G+ F HR DG+L +L
Sbjct: 67 DSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCEL 119
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 25.4 bits (55), Expect = 9.0
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 9 LLAAVAADEHLRDLEISEGVPVGTRV 34
+L + L VP+G +V
Sbjct: 83 VLGVPDEAGRVVLLAPDREVPLGGKV 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,723,641
Number of extensions: 80082
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 47
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)