BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy863
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VNG|A Chain A, Family 51 Carbohydrate Binding Module From A Family 98
           Glycoside Hydrolase Produced By Clostridium Perfringens
           In Complex With Blood Group A-Trisaccharide Ligand.
 pdb|2VNG|B Chain B, Family 51 Carbohydrate Binding Module From A Family 98
           Glycoside Hydrolase Produced By Clostridium Perfringens
           In Complex With Blood Group A-Trisaccharide Ligand.
 pdb|2VNO|A Chain A, Family 51 Carbohydrate Binding Module From A Family 98
           Glycoside Hydrolase Produced By Clostridium Perfringens
           In Complex With Blood Group B-Trisaccharide Ligand.
 pdb|2VNO|B Chain B, Family 51 Carbohydrate Binding Module From A Family 98
           Glycoside Hydrolase Produced By Clostridium Perfringens
           In Complex With Blood Group B-Trisaccharide Ligand.
 pdb|2VNR|A Chain A, Family 51 Carbohydrate Binding Module From A Family 98
           Glycoside Hydrolase Produced By Clostridium Perfringens
          Length = 180

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 20/113 (17%)

Query: 70  LIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSAL--GISSIGI------ 121
           ++Q + P    +N QS++I+  +     S F     T+    S +   IS  G+      
Sbjct: 31  IVQKNHPFTPGNNNQSTKISLKMEDGSISEFEKGLGTIAGSPSTITYDISGAGVTKFFSY 90

Query: 122 -----ACTTIEEVFLKVGDLASKEKIESV-DAKSKRSTLEQVPNGESNKEPLL 168
                +   I E + KV      +KIE V D K   ST+ Q PNG + + P +
Sbjct: 91  LGIDRSANPINEQYAKV------DKIEVVVDGKVIYSTINQFPNGLTYETPAI 137


>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
          Length = 493

 Score = 27.3 bits (59), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 70  LIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEV 129
           ++Q  V D  +     SQITY            L AT    +S   I   G    +   +
Sbjct: 113 VVQLDVRDNMVKLNDGSQITYE---------KCLIATGGTPRSLSAIDRAGAEVKSRTTL 163

Query: 130 FLKVGDLASKEKI 142
           F K+GD  S EKI
Sbjct: 164 FRKIGDFRSLEKI 176


>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
           Inducing Factor (Aif)
          Length = 514

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 70  LIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEV 129
           ++Q  V D  +     SQITY            L AT    +S   I   G    +   +
Sbjct: 131 VVQLDVRDNMVKLNDGSQITYE---------KCLIATGGTPRSLSAIDRAGAEVKSRTTL 181

Query: 130 FLKVGDLASKEKI 142
           F K+GD  S EKI
Sbjct: 182 FRKIGDFRSLEKI 194


>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
 pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
           Prospective Target For Advanced Biofuels Production
          Length = 817

 Score = 26.9 bits (58), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 115 GISSIGIACTTIEEVFLKVGDLASKEKIESVDAKSKR 151
           GI+SIG     +  V +  G L S+E +E VD   +R
Sbjct: 663 GITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRR 699


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,538,471
Number of Sequences: 62578
Number of extensions: 189114
Number of successful extensions: 363
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 4
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)