Query psy863
Match_columns 216
No_of_seqs 290 out of 1283
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:41:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 99.9 7.8E-21 1.7E-25 189.8 17.8 136 2-138 1099-1281(2272)
2 KOG0059|consensus 99.8 9.8E-21 2.1E-25 179.8 7.4 137 1-138 735-879 (885)
3 TIGR01257 rim_protein retinal- 99.7 2.6E-16 5.7E-21 157.9 13.0 134 2-139 2108-2254(2272)
4 COG4152 ABC-type uncharacteriz 99.5 1.9E-13 4.1E-18 110.0 7.9 115 9-137 183-298 (300)
5 TIGR01188 drrA daunorubicin re 99.3 1.9E-11 4E-16 103.6 11.8 128 2-134 162-301 (302)
6 PRK13537 nodulation ABC transp 99.3 3E-11 6.5E-16 102.5 11.6 120 2-137 176-303 (306)
7 PRK13536 nodulation factor exp 99.3 4.8E-11 1E-15 102.6 11.7 120 2-137 210-337 (340)
8 TIGR03522 GldA_ABC_ATP gliding 99.2 1.1E-10 2.4E-15 98.8 11.9 122 2-133 171-300 (301)
9 COG1131 CcmA ABC-type multidru 99.1 3E-10 6.5E-15 95.8 8.4 110 2-135 174-292 (293)
10 TIGR01288 nodI ATP-binding ABC 99.1 1.1E-09 2.4E-14 92.8 11.6 120 2-137 173-300 (303)
11 COG4586 ABC-type uncharacteriz 99.1 8.8E-11 1.9E-15 96.1 4.6 121 2-136 194-323 (325)
12 COG4555 NatA ABC-type Na+ tran 99.0 1.9E-10 4.1E-15 90.4 1.4 46 3-49 172-225 (245)
13 COG4175 ProV ABC-type proline/ 98.3 3.7E-07 8E-12 76.6 1.9 38 9-47 218-255 (386)
14 PF13732 DUF4162: Domain of un 98.2 9.9E-06 2.2E-10 55.3 7.2 83 38-134 1-84 (84)
15 COG1124 DppF ABC-type dipeptid 98.2 8.2E-07 1.8E-11 71.9 1.8 45 2-47 179-232 (252)
16 COG1125 OpuBA ABC-type proline 98.1 9.4E-07 2E-11 72.2 1.9 38 9-47 189-226 (309)
17 TIGR03265 PhnT2 putative 2-ami 98.1 2.5E-06 5.5E-11 73.8 3.2 37 9-46 188-224 (353)
18 TIGR02314 ABC_MetN D-methionin 98.0 2.8E-06 6.2E-11 73.2 3.0 37 9-46 194-230 (343)
19 PRK09536 btuD corrinoid ABC tr 98.0 4E-06 8.6E-11 73.8 3.8 35 9-43 192-226 (402)
20 COG1127 Ttg2A ABC-type transpo 98.0 3E-06 6.4E-11 68.6 2.5 37 9-46 199-235 (263)
21 TIGR03258 PhnT 2-aminoethylpho 98.0 3.9E-06 8.5E-11 72.9 3.1 38 9-47 192-229 (362)
22 PRK15093 antimicrobial peptide 98.0 3.7E-06 8.1E-11 72.1 2.6 37 9-46 212-248 (330)
23 PRK13637 cbiO cobalt transport 98.0 4.6E-06 1E-10 70.2 3.0 35 9-43 198-232 (287)
24 PRK11432 fbpC ferric transport 98.0 5.1E-06 1.1E-10 71.9 3.2 37 9-46 190-226 (351)
25 TIGR03415 ABC_choXWV_ATP choli 98.0 4.9E-06 1.1E-10 72.7 3.0 37 9-46 218-254 (382)
26 COG1123 ATPase components of v 98.0 5E-06 1.1E-10 74.8 3.1 53 2-55 192-253 (539)
27 PRK13643 cbiO cobalt transport 98.0 5.1E-06 1.1E-10 69.9 3.0 35 9-43 197-231 (288)
28 PRK13634 cbiO cobalt transport 98.0 5.4E-06 1.2E-10 69.9 3.1 35 9-43 199-233 (290)
29 PRK11022 dppD dipeptide transp 98.0 4.8E-06 1E-10 71.4 2.8 38 9-47 207-244 (326)
30 TIGR01187 potA spermidine/putr 98.0 5.5E-06 1.2E-10 70.9 3.1 38 9-47 154-191 (325)
31 COG1135 AbcC ABC-type metal io 97.9 4.7E-06 1E-10 69.8 2.4 35 9-43 195-229 (339)
32 PRK11650 ugpC glycerol-3-phosp 97.9 6.1E-06 1.3E-10 71.6 3.1 38 9-47 188-225 (356)
33 PRK09473 oppD oligopeptide tra 97.9 5.3E-06 1.2E-10 71.2 2.6 38 9-47 215-252 (330)
34 PRK10851 sulfate/thiosulfate t 97.9 6.5E-06 1.4E-10 71.3 3.0 37 9-46 190-226 (353)
35 PRK13652 cbiO cobalt transport 97.9 6.4E-06 1.4E-10 68.9 2.9 35 9-43 191-225 (277)
36 KOG0059|consensus 97.9 1E-05 2.2E-10 77.9 4.7 95 23-138 13-107 (885)
37 TIGR01186 proV glycine betaine 97.9 6.4E-06 1.4E-10 71.5 2.9 38 9-47 183-220 (363)
38 COG0444 DppD ABC-type dipeptid 97.9 7.5E-06 1.6E-10 68.9 3.0 39 9-48 207-245 (316)
39 PRK13651 cobalt transporter AT 97.9 7.1E-06 1.5E-10 69.7 2.9 35 9-43 218-252 (305)
40 PRK11153 metN DL-methionine tr 97.9 7.5E-06 1.6E-10 70.6 3.1 38 9-47 194-231 (343)
41 PRK13647 cbiO cobalt transport 97.9 8.5E-06 1.8E-10 68.1 3.2 35 9-43 191-225 (274)
42 COG1118 CysA ABC-type sulfate/ 97.9 9.6E-06 2.1E-10 67.9 3.2 45 9-54 191-235 (345)
43 PRK11308 dppF dipeptide transp 97.9 7.5E-06 1.6E-10 70.2 2.6 37 9-46 208-244 (327)
44 PRK13641 cbiO cobalt transport 97.9 9.3E-06 2E-10 68.3 3.1 37 9-46 198-234 (287)
45 PRK11607 potG putrescine trans 97.9 9.4E-06 2E-10 70.9 3.2 38 9-47 203-240 (377)
46 PRK13636 cbiO cobalt transport 97.9 1E-05 2.2E-10 67.9 3.0 37 9-46 195-231 (283)
47 PRK15079 oligopeptide ABC tran 97.8 9.3E-06 2E-10 69.7 2.7 37 9-46 215-251 (331)
48 PRK11144 modC molybdate transp 97.8 1.1E-05 2.4E-10 69.9 2.9 38 9-47 182-219 (352)
49 PRK09452 potA putrescine/sperm 97.8 1.1E-05 2.5E-10 70.3 3.0 38 9-47 198-235 (375)
50 PRK14268 phosphate ABC transpo 97.8 1.2E-05 2.5E-10 66.6 2.9 37 9-46 206-242 (258)
51 PRK11000 maltose/maltodextrin 97.8 1.3E-05 2.8E-10 69.8 3.0 37 9-46 187-223 (369)
52 PRK13646 cbiO cobalt transport 97.8 1.3E-05 2.9E-10 67.3 3.0 35 9-43 199-233 (286)
53 COG1120 FepC ABC-type cobalami 97.8 1.6E-05 3.6E-10 65.5 3.4 42 2-43 176-226 (258)
54 PRK09493 glnQ glutamine ABC tr 97.8 1.4E-05 3E-10 65.3 3.0 35 9-43 189-223 (240)
55 TIGR00972 3a0107s01c2 phosphat 97.8 1.5E-05 3.2E-10 65.5 2.9 37 9-46 196-232 (247)
56 PRK14274 phosphate ABC transpo 97.8 1.4E-05 3.1E-10 66.1 2.9 37 9-46 207-243 (259)
57 PRK13631 cbiO cobalt transport 97.8 1.5E-05 3.2E-10 68.2 3.0 35 9-43 229-263 (320)
58 PRK10070 glycine betaine trans 97.8 1.2E-05 2.6E-10 70.7 2.4 37 9-46 218-254 (400)
59 TIGR02142 modC_ABC molybdenum 97.8 1.8E-05 3.9E-10 68.6 3.3 38 9-47 185-222 (354)
60 PRK14273 phosphate ABC transpo 97.8 1.7E-05 3.6E-10 65.4 2.9 37 9-46 202-238 (254)
61 PRK14257 phosphate ABC transpo 97.8 1.8E-05 3.8E-10 68.0 3.0 35 9-43 277-311 (329)
62 PRK14270 phosphate ABC transpo 97.8 1.8E-05 3.9E-10 65.1 2.9 35 9-43 199-233 (251)
63 PRK11264 putative amino-acid A 97.7 1.9E-05 4.2E-10 64.8 3.0 35 9-43 197-231 (250)
64 PRK03695 vitamin B12-transport 97.7 2E-05 4.3E-10 64.9 3.1 35 9-43 186-220 (248)
65 cd03294 ABC_Pro_Gly_Bertaine T 97.7 1.9E-05 4.2E-10 65.7 3.0 37 9-46 214-250 (269)
66 PRK15177 Vi polysaccharide exp 97.7 1.3E-05 2.9E-10 64.4 1.9 40 9-49 156-195 (213)
67 PRK14242 phosphate transporter 97.7 1.8E-05 3.9E-10 65.2 2.7 35 9-43 201-235 (253)
68 TIGR02770 nickel_nikD nickel i 97.7 2.1E-05 4.5E-10 63.9 3.0 37 9-46 179-215 (230)
69 PRK14248 phosphate ABC transpo 97.7 1.8E-05 3.8E-10 65.8 2.6 37 9-46 216-252 (268)
70 COG4148 ModC ABC-type molybdat 97.7 1.7E-05 3.7E-10 65.8 2.4 37 9-46 182-218 (352)
71 PRK13639 cbiO cobalt transport 97.7 2.1E-05 4.5E-10 65.8 3.0 35 9-43 190-224 (275)
72 PRK14245 phosphate ABC transpo 97.7 2.1E-05 4.5E-10 64.7 3.0 37 9-46 198-234 (250)
73 PRK14256 phosphate ABC transpo 97.7 2.1E-05 4.5E-10 64.8 2.9 35 9-43 200-234 (252)
74 PRK13638 cbiO cobalt transport 97.7 2.2E-05 4.8E-10 65.4 3.0 35 9-43 189-223 (271)
75 PRK14262 phosphate ABC transpo 97.7 2.2E-05 4.7E-10 64.5 3.0 43 3-46 185-234 (250)
76 PRK14239 phosphate transporter 97.7 2.1E-05 4.6E-10 64.6 2.9 37 9-46 200-236 (252)
77 PRK10575 iron-hydroxamate tran 97.7 2.4E-05 5.1E-10 65.0 3.1 35 9-43 201-235 (265)
78 PRK10619 histidine/lysine/argi 97.7 2.5E-05 5.4E-10 64.6 3.1 35 9-43 205-239 (257)
79 PRK14267 phosphate ABC transpo 97.7 2.3E-05 4.9E-10 64.6 2.9 35 9-43 201-235 (253)
80 PRK10895 lipopolysaccharide AB 97.7 2.3E-05 5.1E-10 64.0 2.8 35 9-43 190-224 (241)
81 PRK13645 cbiO cobalt transport 97.7 2.4E-05 5.3E-10 65.8 3.0 35 9-43 204-238 (289)
82 TIGR01184 ntrCD nitrate transp 97.7 2.6E-05 5.6E-10 63.4 3.0 35 9-43 168-202 (230)
83 cd03299 ABC_ModC_like Archeal 97.7 2.6E-05 5.6E-10 63.6 3.0 35 9-43 183-217 (235)
84 TIGR03873 F420-0_ABC_ATP propo 97.7 2.4E-05 5.2E-10 64.6 2.7 35 9-43 190-224 (256)
85 PRK11831 putative ABC transpor 97.7 2.8E-05 6E-10 64.8 3.0 37 9-46 197-233 (269)
86 PRK10261 glutathione transport 97.7 2.8E-05 6.1E-10 72.2 3.1 35 9-43 517-551 (623)
87 PRK14253 phosphate ABC transpo 97.7 2.9E-05 6.3E-10 63.7 2.9 35 9-43 197-231 (249)
88 TIGR00968 3a0106s01 sulfate AB 97.7 3.3E-05 7.1E-10 63.1 3.1 37 9-46 184-220 (237)
89 PRK14247 phosphate ABC transpo 97.7 3E-05 6.5E-10 63.7 2.9 35 9-43 198-232 (250)
90 PRK13633 cobalt transporter AT 97.6 3E-05 6.5E-10 65.0 2.7 37 9-47 198-234 (280)
91 PRK15439 autoinducer 2 ABC tra 97.6 4.6E-05 1E-09 69.1 4.1 35 9-43 456-490 (510)
92 PRK11701 phnK phosphonate C-P 97.6 3.8E-05 8.2E-10 63.5 3.2 37 9-46 205-241 (258)
93 PRK13546 teichoic acids export 97.6 3.1E-05 6.6E-10 64.5 2.6 40 9-49 196-235 (264)
94 PRK14240 phosphate transporter 97.6 3.2E-05 6.9E-10 63.5 2.7 35 9-43 198-232 (250)
95 cd03295 ABC_OpuCA_Osmoprotecti 97.6 3.8E-05 8.1E-10 62.9 3.1 37 9-46 189-225 (242)
96 PRK14236 phosphate transporter 97.6 3.3E-05 7.2E-10 64.4 2.8 35 9-43 220-254 (272)
97 PRK10253 iron-enterobactin tra 97.6 3.8E-05 8.3E-10 63.8 3.1 35 9-43 197-231 (265)
98 PRK13649 cbiO cobalt transport 97.6 3.6E-05 7.9E-10 64.4 2.9 35 9-43 198-232 (280)
99 PRK11231 fecE iron-dicitrate t 97.6 4E-05 8.6E-10 63.3 3.1 35 9-43 191-225 (255)
100 PRK14237 phosphate transporter 97.6 3.8E-05 8.3E-10 63.9 3.0 35 9-43 215-249 (267)
101 TIGR02769 nickel_nikE nickel i 97.6 4.1E-05 8.9E-10 63.6 3.2 37 9-46 204-240 (265)
102 TIGR03005 ectoine_ehuA ectoine 97.6 4E-05 8.7E-10 63.1 3.0 35 9-43 200-234 (252)
103 PRK13644 cbiO cobalt transport 97.6 3.8E-05 8.3E-10 64.1 2.9 41 2-43 174-222 (274)
104 PRK11288 araG L-arabinose tran 97.6 5.7E-05 1.2E-09 68.4 4.1 35 9-43 449-483 (501)
105 PRK14275 phosphate ABC transpo 97.6 4E-05 8.8E-10 64.4 2.9 37 9-46 234-270 (286)
106 PRK09984 phosphonate/organopho 97.6 4.6E-05 9.9E-10 63.1 3.1 35 9-43 206-240 (262)
107 PRK10418 nikD nickel transport 97.6 4.5E-05 9.8E-10 62.9 3.0 37 9-46 194-230 (254)
108 PRK13548 hmuV hemin importer A 97.6 4.5E-05 9.8E-10 63.1 3.0 35 9-43 194-228 (258)
109 PRK14249 phosphate ABC transpo 97.6 4.3E-05 9.3E-10 62.9 2.8 37 9-46 199-235 (251)
110 COG1137 YhbG ABC-type (unclass 97.6 4.3E-05 9.4E-10 60.5 2.6 35 9-43 192-226 (243)
111 PRK14250 phosphate ABC transpo 97.6 4.6E-05 9.9E-10 62.4 2.9 35 9-43 185-219 (241)
112 COG1123 ATPase components of v 97.6 3.2E-05 6.9E-10 69.7 2.1 37 9-46 483-519 (539)
113 PRK14235 phosphate transporter 97.6 4.3E-05 9.3E-10 63.5 2.8 35 9-43 215-249 (267)
114 PRK14238 phosphate transporter 97.6 4.5E-05 9.8E-10 63.6 2.8 35 9-43 219-253 (271)
115 PRK15112 antimicrobial peptide 97.6 4.6E-05 9.9E-10 63.4 2.8 37 9-46 203-239 (267)
116 PRK14251 phosphate ABC transpo 97.6 4.7E-05 1E-09 62.6 2.9 35 9-43 199-233 (251)
117 PRK14269 phosphate ABC transpo 97.6 4.7E-05 1E-09 62.5 2.8 35 9-43 194-228 (246)
118 COG3842 PotA ABC-type spermidi 97.6 3.2E-05 6.8E-10 66.6 1.8 35 9-43 190-224 (352)
119 PRK14272 phosphate ABC transpo 97.6 4.9E-05 1.1E-09 62.5 2.9 37 9-46 200-236 (252)
120 PRK14261 phosphate ABC transpo 97.6 4.6E-05 9.9E-10 62.8 2.7 37 9-46 201-237 (253)
121 PRK10762 D-ribose transporter 97.6 7.1E-05 1.5E-09 67.8 4.1 35 9-43 448-482 (501)
122 PRK10744 pstB phosphate transp 97.6 5.2E-05 1.1E-09 62.8 2.9 35 9-43 208-242 (260)
123 TIGR03771 anch_rpt_ABC anchore 97.6 6E-05 1.3E-09 61.0 3.2 36 9-46 166-201 (223)
124 PRK14258 phosphate ABC transpo 97.6 4.9E-05 1.1E-09 63.0 2.7 37 9-46 204-245 (261)
125 COG1126 GlnQ ABC-type polar am 97.6 5.3E-05 1.1E-09 60.6 2.7 35 9-43 189-223 (240)
126 PRK10762 D-ribose transporter 97.5 6.9E-05 1.5E-09 67.8 3.8 35 9-43 194-228 (501)
127 PRK14263 phosphate ABC transpo 97.5 5.4E-05 1.2E-09 62.8 2.8 37 9-46 201-245 (261)
128 PRK14243 phosphate transporter 97.5 5.4E-05 1.2E-09 62.9 2.8 37 9-46 203-248 (264)
129 PRK14252 phosphate ABC transpo 97.5 5.7E-05 1.2E-09 62.7 2.9 35 9-43 213-247 (265)
130 PRK13635 cbiO cobalt transport 97.5 5.9E-05 1.3E-09 63.2 2.9 36 9-46 194-229 (279)
131 PRK10261 glutathione transport 97.5 4.6E-05 1E-09 70.8 2.3 35 9-43 222-256 (623)
132 PRK13547 hmuV hemin importer A 97.5 6.5E-05 1.4E-09 62.8 3.0 35 9-43 208-242 (272)
133 PRK14246 phosphate ABC transpo 97.5 6.8E-05 1.5E-09 62.1 3.0 35 9-43 205-239 (257)
134 PRK14260 phosphate ABC transpo 97.5 6.2E-05 1.3E-09 62.3 2.8 42 2-43 188-241 (259)
135 TIGR02323 CP_lyasePhnK phospho 97.5 6.8E-05 1.5E-09 61.7 3.0 37 9-46 202-238 (253)
136 PRK15439 autoinducer 2 ABC tra 97.5 7.1E-05 1.5E-09 67.9 3.4 35 9-43 193-227 (510)
137 PRK10419 nikE nickel transport 97.5 7.6E-05 1.6E-09 62.1 3.3 37 9-46 205-241 (268)
138 PRK09700 D-allose transporter 97.5 8.2E-05 1.8E-09 67.5 3.6 35 9-43 198-232 (510)
139 PRK13545 tagH teichoic acids e 97.5 6.3E-05 1.4E-09 68.0 2.7 40 9-49 196-235 (549)
140 PRK10982 galactose/methyl gala 97.5 8.6E-05 1.9E-09 67.0 3.6 42 2-43 172-221 (491)
141 PRK13549 xylose transporter AT 97.5 8.9E-05 1.9E-09 67.2 3.6 35 9-43 196-230 (506)
142 COG1129 MglA ABC-type sugar tr 97.5 0.0001 2.2E-09 66.1 3.8 35 9-43 198-233 (500)
143 PRK14266 phosphate ABC transpo 97.5 7.4E-05 1.6E-09 61.4 2.8 35 9-43 198-232 (250)
144 PRK13640 cbiO cobalt transport 97.5 7.5E-05 1.6E-09 62.6 2.9 34 9-43 197-230 (282)
145 PRK11247 ssuB aliphatic sulfon 97.5 0.00011 2.5E-09 60.8 3.9 35 9-43 187-221 (257)
146 PRK14271 phosphate ABC transpo 97.5 7.8E-05 1.7E-09 62.4 2.9 37 9-46 215-251 (276)
147 PRK13650 cbiO cobalt transport 97.5 7.7E-05 1.7E-09 62.5 2.8 34 9-43 194-227 (279)
148 PRK14241 phosphate transporter 97.5 7.7E-05 1.7E-09 61.6 2.6 35 9-43 200-240 (258)
149 PRK14259 phosphate ABC transpo 97.5 8E-05 1.7E-09 62.0 2.7 35 9-43 206-251 (269)
150 cd03289 ABCC_CFTR2 The CFTR su 97.4 7E-05 1.5E-09 62.7 2.3 36 9-46 190-225 (275)
151 PRK14255 phosphate ABC transpo 97.4 9.1E-05 2E-09 60.9 2.9 35 9-43 200-234 (252)
152 PRK15134 microcin C ABC transp 97.4 9.6E-05 2.1E-09 67.3 3.1 35 9-43 210-244 (529)
153 PRK13648 cbiO cobalt transport 97.4 9.2E-05 2E-09 61.6 2.7 36 9-46 196-231 (269)
154 PRK10938 putative molybdenum t 97.4 9.6E-05 2.1E-09 66.7 2.9 35 9-43 188-222 (490)
155 PRK14265 phosphate ABC transpo 97.4 0.00012 2.6E-09 61.1 2.8 35 9-43 213-256 (274)
156 PRK13642 cbiO cobalt transport 97.4 0.00014 3E-09 60.9 3.0 36 9-46 194-229 (277)
157 PRK14264 phosphate ABC transpo 97.3 0.00013 2.9E-09 61.9 2.5 43 3-46 239-289 (305)
158 TIGR02633 xylG D-xylose ABC tr 97.3 0.00019 4.1E-09 64.9 3.5 35 9-43 194-228 (500)
159 COG4608 AppF ABC-type oligopep 97.3 0.00013 2.8E-09 60.3 1.8 38 9-47 163-200 (268)
160 PRK14254 phosphate ABC transpo 97.3 0.00019 4.1E-09 60.4 2.8 35 9-43 232-267 (285)
161 PRK15056 manganese/iron transp 97.3 0.00022 4.8E-09 59.5 3.2 34 9-43 195-228 (272)
162 PRK13632 cbiO cobalt transport 97.2 0.00021 4.6E-09 59.5 2.6 34 9-43 196-229 (271)
163 COG4172 ABC-type uncharacteriz 97.2 0.00018 3.9E-09 62.6 2.0 50 2-52 195-253 (534)
164 TIGR03269 met_CoM_red_A2 methy 97.2 0.00025 5.3E-09 64.5 2.9 38 9-47 222-259 (520)
165 COG3839 MalK ABC-type sugar tr 97.2 0.00028 6E-09 60.5 2.9 38 9-47 187-224 (338)
166 PRK11248 tauB taurine transpor 97.2 0.00043 9.3E-09 57.2 3.8 33 9-41 182-216 (255)
167 COG4172 ABC-type uncharacteriz 97.0 0.00036 7.9E-09 60.8 2.4 37 9-46 480-516 (534)
168 PRK09544 znuC high-affinity zi 97.0 0.00043 9.3E-09 57.1 2.5 34 9-43 174-207 (251)
169 COG3638 ABC-type phosphate/pho 97.0 0.0004 8.7E-09 56.3 1.8 35 9-43 201-235 (258)
170 PRK15064 ABC transporter ATP-b 96.9 0.00053 1.1E-08 62.5 2.7 42 2-43 193-240 (530)
171 PRK11288 araG L-arabinose tran 96.9 0.00077 1.7E-08 61.0 3.6 32 9-40 193-224 (501)
172 PLN03211 ABC transporter G-25; 96.8 0.00061 1.3E-08 63.8 1.6 39 9-48 259-298 (659)
173 PRK10636 putative ABC transpor 96.7 0.00085 1.8E-08 62.6 2.3 43 3-46 469-517 (638)
174 PRK11819 putative ABC transpor 96.7 0.00095 2.1E-08 61.3 2.5 41 3-43 202-248 (556)
175 cd03291 ABCC_CFTR1 The CFTR su 96.7 0.00091 2E-08 56.2 2.1 36 9-46 212-247 (282)
176 COG4559 ABC-type hemin transpo 96.6 0.00082 1.8E-08 53.9 1.3 35 9-43 194-228 (259)
177 TIGR00955 3a01204 The Eye Pigm 96.5 0.0013 2.8E-08 61.1 2.0 39 9-48 219-258 (617)
178 TIGR01192 chvA glucan exporter 96.5 0.0019 4.2E-08 59.6 2.8 39 9-49 523-561 (585)
179 TIGR03719 ABC_ABC_ChvD ATP-bin 96.4 0.0021 4.5E-08 59.0 2.5 35 9-43 211-246 (552)
180 COG3845 ABC-type uncharacteriz 96.4 0.0034 7.3E-08 55.9 3.5 31 9-39 193-223 (501)
181 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.0027 5.9E-08 52.3 2.7 41 2-43 177-225 (254)
182 COG1117 PstB ABC-type phosphat 96.3 0.0014 2.9E-08 52.7 0.7 35 9-43 201-235 (253)
183 COG1116 TauB ABC-type nitrate/ 96.3 0.0034 7.3E-08 51.4 2.9 24 9-32 184-207 (248)
184 PRK11819 putative ABC transpor 96.3 0.0025 5.4E-08 58.6 2.3 42 2-43 483-531 (556)
185 PRK10789 putative multidrug tr 96.2 0.0032 6.9E-08 58.0 2.7 39 9-49 503-541 (569)
186 PRK10535 macrolide transporter 96.1 0.0054 1.2E-07 57.4 3.8 34 9-43 197-230 (648)
187 cd03237 ABC_RNaseL_inhibitor_d 96.1 0.0041 8.9E-08 51.2 2.7 35 9-43 169-205 (246)
188 TIGR03719 ABC_ABC_ChvD ATP-bin 96.1 0.0034 7.3E-08 57.6 2.3 42 2-43 481-529 (552)
189 COG4988 CydD ABC-type transpor 96.1 0.003 6.6E-08 57.2 1.9 39 9-49 508-546 (559)
190 PRK00349 uvrA excinuclease ABC 96.0 0.0039 8.4E-08 60.5 2.4 36 9-46 544-585 (943)
191 cd03236 ABC_RNaseL_inhibitor_d 96.0 0.0034 7.3E-08 52.0 1.7 29 9-38 192-220 (255)
192 TIGR00630 uvra excinuclease AB 96.0 0.0041 8.9E-08 60.2 2.3 36 9-46 542-583 (924)
193 PRK11147 ABC transporter ATPas 95.9 0.0049 1.1E-07 57.5 2.6 42 2-43 194-241 (635)
194 PRK00349 uvrA excinuclease ABC 95.9 0.0051 1.1E-07 59.7 2.6 36 9-46 886-927 (943)
195 PRK10790 putative multidrug tr 95.9 0.0062 1.3E-07 56.3 2.9 38 9-48 528-565 (592)
196 PLN03073 ABC transporter F fam 95.8 0.006 1.3E-07 57.7 2.7 42 2-43 382-429 (718)
197 PLN03232 ABC transporter C fam 95.7 0.0058 1.2E-07 62.3 2.4 38 9-48 1423-1460(1495)
198 PRK10636 putative ABC transpor 95.7 0.0073 1.6E-07 56.5 2.8 41 3-43 188-234 (638)
199 PLN03130 ABC transporter C fam 95.6 0.0066 1.4E-07 62.3 2.4 37 9-47 1426-1462(1622)
200 cd03222 ABC_RNaseL_inhibitor T 95.6 0.0074 1.6E-07 47.2 2.1 27 9-35 125-151 (177)
201 PLN03140 ABC transporter G fam 95.6 0.007 1.5E-07 61.5 2.3 39 9-48 390-429 (1470)
202 PRK11174 cysteine/glutathione 95.4 0.0089 1.9E-07 55.2 2.3 38 9-48 537-574 (588)
203 PRK13657 cyclic beta-1,2-gluca 95.4 0.011 2.5E-07 54.5 2.7 37 9-47 523-559 (588)
204 TIGR00956 3a01205 Pleiotropic 95.3 0.01 2.3E-07 60.1 2.3 39 9-48 263-302 (1394)
205 PTZ00243 ABC transporter; Prov 95.2 0.011 2.5E-07 60.4 2.3 37 9-47 1498-1534(1560)
206 COG4604 CeuD ABC-type enteroch 95.0 0.0099 2.2E-07 47.3 1.1 35 9-43 189-223 (252)
207 PRK00635 excinuclease ABC subu 95.0 0.015 3.3E-07 59.6 2.7 36 9-46 865-906 (1809)
208 PRK13409 putative ATPase RIL; 94.9 0.021 4.7E-07 52.9 3.1 31 9-40 507-537 (590)
209 TIGR01271 CFTR_protein cystic 94.8 0.021 4.5E-07 58.4 3.0 36 9-46 1405-1440(1490)
210 PLN03140 ABC transporter G fam 94.8 0.023 4.9E-07 57.9 3.1 33 9-41 1072-1106(1470)
211 TIGR01271 CFTR_protein cystic 94.7 0.019 4E-07 58.7 2.3 37 9-47 601-637 (1490)
212 KOG0054|consensus 94.4 0.018 3.8E-07 57.7 1.3 37 9-47 696-732 (1381)
213 TIGR00956 3a01205 Pleiotropic 94.4 0.031 6.8E-07 56.7 3.1 35 9-43 955-991 (1394)
214 PRK11147 ABC transporter ATPas 94.4 0.036 7.8E-07 51.8 3.2 41 3-43 479-526 (635)
215 TIGR00957 MRP_assoc_pro multi 94.2 0.022 4.7E-07 58.4 1.6 37 9-47 815-851 (1522)
216 COG4107 PhnK ABC-type phosphon 94.2 0.033 7E-07 43.6 2.2 35 9-43 205-239 (258)
217 COG1101 PhnK ABC-type uncharac 94.1 0.047 1E-06 44.1 2.9 34 9-42 202-235 (263)
218 KOG0055|consensus 94.0 0.029 6.3E-07 55.2 2.0 39 9-49 541-579 (1228)
219 PTZ00243 ABC transporter; Prov 93.6 0.04 8.7E-07 56.5 2.2 36 9-46 835-870 (1560)
220 COG4598 HisP ABC-type histidin 93.4 0.038 8.2E-07 43.5 1.2 35 9-43 205-239 (256)
221 cd03285 ABC_MSH2_euk MutS2 hom 93.3 0.15 3.2E-06 41.3 4.5 31 9-40 146-176 (222)
222 PRK00635 excinuclease ABC subu 93.1 0.065 1.4E-06 55.2 2.7 34 9-43 531-570 (1809)
223 PRK07721 fliI flagellum-specif 92.5 0.05 1.1E-06 48.6 0.9 33 9-43 309-341 (438)
224 PLN03130 ABC transporter C fam 92.3 0.075 1.6E-06 54.8 2.0 37 9-47 793-829 (1622)
225 COG4138 BtuD ABC-type cobalami 92.2 0.031 6.7E-07 43.8 -0.7 35 9-43 185-219 (248)
226 PLN03232 ABC transporter C fam 92.2 0.078 1.7E-06 54.4 1.9 37 9-47 793-829 (1495)
227 cd03280 ABC_MutS2 MutS2 homolo 91.7 0.065 1.4E-06 42.5 0.7 32 9-43 144-175 (200)
228 PRK13409 putative ATPase RIL; 91.7 0.12 2.5E-06 48.1 2.4 24 9-32 264-287 (590)
229 COG4167 SapF ABC-type antimicr 91.1 0.13 2.8E-06 40.7 1.8 35 9-43 203-237 (267)
230 PTZ00265 multidrug resistance 90.4 0.14 3.1E-06 52.3 1.7 23 9-32 633-655 (1466)
231 KOG0058|consensus 90.1 0.12 2.6E-06 48.3 0.8 38 9-48 656-693 (716)
232 KOG0054|consensus 88.8 0.25 5.3E-06 49.9 2.0 39 9-49 1327-1365(1381)
233 cd03243 ABC_MutS_homologs The 88.6 0.26 5.6E-06 39.1 1.7 34 9-43 144-177 (202)
234 COG0396 sufC Cysteine desulfur 88.0 0.31 6.7E-06 39.7 1.8 37 9-47 197-234 (251)
235 COG4525 TauB ABC-type taurine 87.0 0.37 8.1E-06 38.5 1.6 35 9-43 186-222 (259)
236 KOG0057|consensus 86.6 0.44 9.5E-06 43.4 2.0 36 9-46 539-574 (591)
237 cd03284 ABC_MutS1 MutS1 homolo 86.4 0.3 6.6E-06 39.3 0.9 34 9-43 146-179 (216)
238 COG1132 MdlB ABC-type multidru 82.9 0.81 1.8E-05 42.1 2.1 26 21-47 528-553 (567)
239 COG4170 SapD ABC-type antimicr 82.5 0.71 1.5E-05 37.4 1.4 38 9-47 212-249 (330)
240 TIGR03864 PQQ_ABC_ATP ABC tran 80.7 1.2 2.6E-05 36.0 2.1 25 23-48 199-223 (236)
241 KOG2355|consensus 79.4 1 2.2E-05 36.4 1.3 35 9-43 201-235 (291)
242 KOG0055|consensus 77.7 1 2.2E-05 44.9 1.0 32 21-53 1189-1220(1228)
243 PRK02553 psbK photosystem II r 76.0 4.1 8.9E-05 23.9 2.8 22 173-194 21-44 (45)
244 PF02533 PsbK: Photosystem II 74.4 2.8 6.1E-05 24.2 1.8 22 173-194 18-41 (42)
245 TIGR00634 recN DNA repair prot 73.5 2 4.3E-05 39.7 1.7 24 9-33 496-519 (563)
246 PRK11176 lipid transporter ATP 72.5 2.6 5.6E-05 38.9 2.2 32 17-49 539-570 (582)
247 COG4618 ArpD ABC-type protease 69.6 1.2 2.6E-05 40.4 -0.6 38 9-48 525-562 (580)
248 TIGR00416 sms DNA repair prote 68.5 1.9 4.1E-05 38.8 0.4 41 9-50 215-263 (454)
249 CHL00047 psbK photosystem II p 63.0 9.3 0.0002 23.8 2.6 22 173-194 34-57 (58)
250 KOG0056|consensus 62.0 3.1 6.7E-05 38.0 0.5 39 9-49 726-764 (790)
251 PTZ00265 multidrug resistance 61.8 5.5 0.00012 41.2 2.3 27 9-36 1412-1442(1466)
252 PRK13830 conjugal transfer pro 60.8 4.2 9.1E-05 39.4 1.2 34 9-42 688-730 (818)
253 PLN00075 Photosystem II reacti 60.8 11 0.00024 22.9 2.5 22 173-194 28-51 (52)
254 smart00534 MUTSac ATPase domai 59.2 4.2 9E-05 31.7 0.7 34 9-43 115-148 (185)
255 PF12399 BCA_ABC_TP_C: Branche 56.4 3.8 8.3E-05 20.7 0.1 13 33-46 1-13 (23)
256 COG0178 UvrA Excinuclease ATPa 55.7 4.6 9.9E-05 38.9 0.5 36 9-46 878-919 (935)
257 TIGR02655 circ_KaiC circadian 51.1 8 0.00017 35.1 1.3 22 9-30 160-190 (484)
258 TIGR03880 KaiC_arch_3 KaiC dom 49.8 6.7 0.00014 31.3 0.5 22 9-30 147-177 (224)
259 PRK10869 recombination and rep 48.3 13 0.00028 34.4 2.2 24 9-33 486-509 (553)
260 TIGR02203 MsbA_lipidA lipid A 46.8 14 0.0003 33.9 2.2 30 17-47 528-557 (571)
261 COG0488 Uup ATPase components 46.3 16 0.00034 33.7 2.4 30 9-38 203-232 (530)
262 cd03283 ABC_MutS-like MutS-lik 45.0 17 0.00037 28.7 2.2 22 9-30 141-164 (199)
263 COG0178 UvrA Excinuclease ATPa 44.2 17 0.00037 35.2 2.3 37 9-47 536-578 (935)
264 TIGR00152 dephospho-CoA kinase 43.8 14 0.0003 28.6 1.5 23 9-31 108-132 (188)
265 cd03282 ABC_MSH4_euk MutS4 hom 42.5 16 0.00034 29.1 1.6 17 9-25 144-160 (204)
266 PRK13764 ATPase; Provisional 40.8 26 0.00056 32.9 2.9 28 15-42 373-402 (602)
267 KOG0061|consensus 39.2 11 0.00024 35.3 0.3 39 9-48 223-262 (613)
268 TIGR01026 fliI_yscN ATPase Fli 37.5 12 0.00026 33.6 0.2 33 9-43 314-346 (440)
269 TIGR03881 KaiC_arch_4 KaiC dom 35.0 16 0.00035 29.2 0.6 22 9-30 159-188 (229)
270 PRK00753 psbL photosystem II r 29.7 61 0.0013 18.4 2.1 13 182-194 26-38 (39)
271 TIGR02788 VirB11 P-type DNA tr 27.6 7.2 0.00016 33.1 -2.7 34 9-43 246-279 (308)
272 KOG0927|consensus 26.9 28 0.0006 32.2 0.7 35 9-43 272-307 (614)
273 PF02419 PsbL: PsbL protein; 26.0 1.1E+02 0.0024 17.2 2.8 12 183-194 25-36 (37)
274 PF07256 DUF1435: Protein of u 25.9 1.1E+02 0.0025 20.4 3.3 28 167-194 47-75 (78)
275 PRK05886 yajC preprotein trans 25.9 82 0.0018 22.6 2.9 19 175-193 5-23 (109)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=7.8e-21 Score=189.85 Aligned_cols=136 Identities=32% Similarity=0.489 Sum_probs=121.1
Q ss_pred hhhhhHH-------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCc-------------
Q psy863 2 VLWCILL-------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDD------------- 61 (216)
Q Consensus 2 ~iw~lI~-------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~------------- 61 (216)
.+|++|+ ||+|||+|+|++.+||||++|++|++++.|++.+| |+++|.+|.+++...+.
T Consensus 1099 ~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L-k~~~g~gy~l~~~~~~~~~~~~~~~~~~~~ 1177 (2272)
T TIGR01257 1099 SIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL-KNCFGTGFYLTLVRKMKNIQSQRGGCEGTC 1177 (2272)
T ss_pred HHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH-HHhcCCcEEEEEEecccccccccccccccc
Confidence 5788887 99999999999999999999999999999999999 99999999999865420
Q ss_pred -------------------------cCHHHHHHHHHhhCCCcEEeeecCcEEEEEecCCCC--CcHHHHHHHHHhhhhhC
Q psy863 62 -------------------------IQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDT--SPFPALFATLEEKKSAL 114 (216)
Q Consensus 62 -------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 114 (216)
.+.+.+.+++++++|++...+..+.++.+.+|.+.. ..++.+++.|++...++
T Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~l 1257 (2272)
T TIGR01257 1178 SCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADL 1257 (2272)
T ss_pred cccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhHhhC
Confidence 135668888999999999999999999999998764 35899999999888899
Q ss_pred CcceEEeecCCHHHHHHhhccccc
Q psy863 115 GISSIGIACTTIEEVFLKVGDLAS 138 (216)
Q Consensus 115 ~i~~~~~~~~sLEdvFl~l~~~~~ 138 (216)
+|.+|.++.+||||||+++.++.+
T Consensus 1258 gi~sygis~tTLEeVFlkv~~~~~ 1281 (2272)
T TIGR01257 1258 GLSSFGISDTPLEEIFLKVTEDAD 1281 (2272)
T ss_pred CCceEEeecCCHHHHHHHhhhhcc
Confidence 999999999999999999987654
No 2
>KOG0059|consensus
Probab=99.82 E-value=9.8e-21 Score=179.82 Aligned_cols=137 Identities=25% Similarity=0.390 Sum_probs=123.0
Q ss_pred ChhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHH
Q psy863 1 MVLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQ 72 (216)
Q Consensus 1 ~~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~ 72 (216)
+.+|++|+ ||+|||+|+|+|.+|||++||.+|++.|.|++++| |+++|.+|.+++...+..+...+...++
T Consensus 735 r~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~L-KsrfG~gy~l~~~~~~~~~~~~v~~~~~ 813 (885)
T KOG0059|consen 735 RHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL-KSRYGSGYTLTVRIKELPEVSEVEKLLQ 813 (885)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHH-HhhcCCcEEEEEEECCCcccchHHHHHH
Confidence 46899999 99999999999999999999999999999999999 9999999999998877555457778888
Q ss_pred hhCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhccccc
Q psy863 73 SHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLAS 138 (216)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~~~ 138 (216)
..+|++.........+.+.+|.+......+++..++..+...++.++++++++|||+|+++++.++
T Consensus 814 ~~~p~a~~~~~~~~~~~~~ip~~~~~~~~~vF~~le~~~~~~~i~dyslsq~tLe~VFi~~a~~q~ 879 (885)
T KOG0059|consen 814 NRFPGAVLKERHAGLLAFEIPKDEVVSLSEVFLALEKAKESFGIEDYSLSQTTLEDVFLILAKTQE 879 (885)
T ss_pred HhCCCcchhhhhhceEEEEcccchhhHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHHhcccc
Confidence 889999888777777899999777666778999999988899999999999999999999998765
No 3
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=2.6e-16 Score=157.91 Aligned_cols=134 Identities=16% Similarity=0.305 Sum_probs=107.7
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccC-----HHHHH
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQ-----VSAIT 68 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~-----~~~l~ 68 (216)
.+|++|+ ||+|||+|+|+|.+|||++||++|++++.|+++++ |++++.+|.+++....... .+.+.
T Consensus 2108 ~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L-k~~~g~g~~l~i~~~~~~~~~~~~~~~v~ 2186 (2272)
T TIGR01257 2108 MLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL-KSKFGDGYIVTMKIKSPKDDLLPDLNPVE 2186 (2272)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH-HHHhCCceEEEEEEcCcchhhhhHHHHHH
Confidence 5788887 99999999999999999999999999999999999 9999999988876543211 12334
Q ss_pred HHHHhhCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhcccccc
Q psy863 69 DLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLASK 139 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~~~~ 139 (216)
.++...+|++.......+.+.+.++.. ...+++..+++++.+++|.++++.++||||+|+++++.+.+
T Consensus 2187 ~~i~~~fp~a~~~e~~~~~l~~~i~~~---~~~~if~~L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2187 QFFQGNFPGSVQRERHYNMLQFQVSSS---SLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred HHHhhcCccceeeccccceEEEEeCcc---cHHHHHHHHHhcCCCCCeEEEEcCCCCHHHHHHHHhccccc
Confidence 455566777665555566777877642 46889999987666789999999999999999999887653
No 4
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=1.9e-13 Score=110.01 Aligned_cols=115 Identities=12% Similarity=0.147 Sum_probs=82.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHHhhCCCcEEee-ecCcE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHN-TQSSQ 87 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 87 (216)
||+|||.|+.||+|||+++||++|+.+..|++.++ ++.+|... +.+. .+...+.+. .+|++.-.. ...+.
T Consensus 183 IifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~i-r~~~Gkk~-~~ie--s~~s~eeL~-----~ipgi~~~~~~~~G~ 253 (300)
T COG4152 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI-RRSFGKKR-LVIE--SDLSLEELA-----NIPGILKITETKDGS 253 (300)
T ss_pred EEEecchHHHHHHHhhhhheecCCceEEeccHHHH-HHhcCCce-EEEe--ccCchHHHh-----cCCCceeeeeccCCc
Confidence 99999999999999999999999999999999999 99888653 3232 222222222 256654433 23333
Q ss_pred EEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhcccc
Q psy863 88 ITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLA 137 (216)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~~ 137 (216)
..+.+. +.....++++.+.. +.-|..|....|||+|+|...++..
T Consensus 254 ~~i~ie--~e~~a~~ifq~~a~---~g~i~~Fe~~~PsL~diFi~~~g~~ 298 (300)
T COG4152 254 WRIQIE--NETVAREIFQEVAR---DGYIQRFELQEPSLHDIFIEKVGGV 298 (300)
T ss_pred eEeecc--cchHHHHHHHHHhc---cceeEEEeecCCCHHHHHHHHhccc
Confidence 334433 33445678877763 4568899999999999999887753
No 5
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.32 E-value=1.9e-11 Score=103.57 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=81.1
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHH--
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLI-- 71 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~-- 71 (216)
.+|++|+ ||++||++++++++|||+++|++|++++.|+++++ +++++.. .+.+..............+
T Consensus 162 ~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (302)
T TIGR01188 162 AIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL-KRRLGKD-TLESRPRDIQSLKVEVSMLIA 239 (302)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH-HHhcCCc-eEEEEecCchhhhhhhhHHHh
Confidence 4677776 99999999999999999999999999999999999 8776533 2333322211111111111
Q ss_pred --HhhCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhc
Q psy863 72 --QSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVG 134 (216)
Q Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~ 134 (216)
....++.......++.+.+.++.. .....+++..+.. .+..+.++...++||||+|++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~--~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 240 ELGETGLGLLAVTVDSDRIKILVPDG-DETVPEIVEAAIR--NGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred hhhhccccceeeeecCCeEEEEEcCc-hhHHHHHHHHHHH--CCCceEEEEcCCCCHHHHHHHHh
Confidence 111112212222334444444321 2234567776653 46788999999999999999875
No 6
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.29 E-value=3e-11 Score=102.48 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=73.9
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHHh
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQS 73 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 73 (216)
++|++|+ ||+|||+|+|++++||||++|++|++++.|+++++ +........+.+.... .......+.
T Consensus 176 ~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l-~~~~~~~~~~~~~~~~---~~~~~~~~~- 250 (306)
T PRK13537 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL-IESEIGCDVIEIYGPD---PVALRDELA- 250 (306)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH-HhccCCCeEEEEEcCC---hHHHHHHhh-
Confidence 5788887 99999999999999999999999999999999999 7654333333333221 112222121
Q ss_pred hCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhcccc
Q psy863 74 HVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLA 137 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~~ 137 (216)
+........+..+.+... . ..++.+.+.. ...+ .+....+||||+|+++++..
T Consensus 251 --~~~~~~~~~~~~~~~~~~--~---~~~~~~~l~~---~~~~-~~~~~~~sLed~f~~~~~~~ 303 (306)
T PRK13537 251 --PLAERTEISGETLFCYVR--D---PEPLHARLKG---RAGL-RYLHRPANLEDVFLRLTGRE 303 (306)
T ss_pred --hccceeeeeCCEEEEEeC--C---HHHHHHHHHh---ccCc-eEEecCCCHHHHHHHHhCcc
Confidence 111111222333333321 1 2445555532 1123 44457899999999998643
No 7
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.27 E-value=4.8e-11 Score=102.60 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=74.7
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHHh
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQS 73 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 73 (216)
++|++|+ ||+|||+++|++++||||++|++|++++.|+++++ +........+.+.... .+.+......
T Consensus 210 ~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l-~~~~~~~~~~~~~~~~---~~~~~~~~~~ 285 (340)
T PRK13536 210 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL-IDEHIGCQVIEIYGGD---PHELSSLVKP 285 (340)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-HhhccCceEEEEEcCC---hHHHHHHhhc
Confidence 5788887 99999999999999999999999999999999999 7664433333333211 1222222111
Q ss_pred hCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhcccc
Q psy863 74 HVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLA 137 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~~ 137 (216)
........+..+.+.. .. ..++.+.+.. ....++....+||||+|++++++.
T Consensus 286 ---~~~~~~~~~~~~~~~~--~~---~~~~~~~l~~----~~~~~~~~~~~sLEdvf~~~~~~~ 337 (340)
T PRK13536 286 ---YARRIEVSGETLFCYA--PD---PEQVRVQLRG----RAGLRLLQRPPNLEDVFLRLTGRE 337 (340)
T ss_pred ---ccceEEecCCEEEEEe--CC---HHHHHHHHHh----ccCceEEEcCCCHHHHHHHHhccc
Confidence 1111112233333321 11 2344444431 112267788999999999998753
No 8
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.23 E-value=1.1e-10 Score=98.78 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=78.4
Q ss_pred hhhhhHH-------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHHhh
Q psy863 2 VLWCILL-------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSH 74 (216)
Q Consensus 2 ~iw~lI~-------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 74 (216)
++|++|+ ||++||+++|++++|||+++|++|++++.|+++++ ++..+ ...+.+....... ... .. .
T Consensus 171 ~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~~~~-~~~~~i~~~~~~~-~~~---~~-~ 243 (301)
T TIGR03522 171 EIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL-SAANK-KQVIEVEFEEQID-LQL---FE-T 243 (301)
T ss_pred HHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-HHhcC-CceEEEEecCcch-hHH---Hh-h
Confidence 4677777 99999999999999999999999999999999999 77643 2334443322111 111 11 1
Q ss_pred CCCcEEeee-cCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhh
Q psy863 75 VPDASLHNT-QSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKV 133 (216)
Q Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l 133 (216)
......... .++.+.+..+.. .....++...+.. .++.+.++...+++|||+|.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~sLe~~~~~~ 300 (301)
T TIGR03522 244 LEEISSVKNTGGNTWKLTFETP-NDTRPEIFKLAQQ--KGLKLISLQQNEKNLEQVFREI 300 (301)
T ss_pred ccccceeeecCCCeEEEEEcCc-cchHHHHHHHHHH--CCCceEEEEeCCCCHHHHHHHh
Confidence 122111111 233344433221 1234566666642 3678889999999999999876
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.10 E-value=3e-10 Score=95.78 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=72.8
Q ss_pred hhhhhHH---------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHH
Q psy863 2 VLWCILL---------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQ 72 (216)
Q Consensus 2 ~iw~lI~---------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~ 72 (216)
++|++|+ |++|||+++|++.+||||++|++|++++.|+++++ +..++....+....... .... ...
T Consensus 174 ~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l-~~~~~~~~~~~~~~~~~-~~~~---~~~ 248 (293)
T COG1131 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL-KEKFGGKGVIELEPERL-ELAE---LLE 248 (293)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH-HHhhccCceEEEecccc-cchh---hhh
Confidence 5788888 99999999999999999999999999999999999 87765433333221110 0000 000
Q ss_pred hhCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhcc
Q psy863 73 SHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGD 135 (216)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~ 135 (216)
. .+ . ... ......+...+.+ .+..+..+.....+||++|...++
T Consensus 249 ~-~~---~---~~~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 292 (293)
T COG1131 249 G-LK---L---VKG----------EEELAEILEALLE--EGVKIESIEVKEPSLEDVFLELTG 292 (293)
T ss_pred c-cc---c---ccc----------chhHHHHHHHHHH--cCCceeeeecCCCCHHHHHHHHcc
Confidence 0 00 0 000 1123455555553 355666788889999999998765
No 10
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.10 E-value=1.1e-09 Score=92.82 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=74.6
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHHh
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQS 73 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 73 (216)
++|++|+ ||++||++++++.+|||+++|++|++++.|+++++ ...........+...+ .+.+.....
T Consensus 173 ~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~- 247 (303)
T TIGR01288 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL-IDEQIGCNVIEIYGGD---PDELRELIR- 247 (303)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-HhhcCCCeEEEEEcCC---HHHHHHHhh-
Confidence 4667776 99999999999999999999999999999999998 7654333333333222 122222221
Q ss_pred hCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhcccc
Q psy863 74 HVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLA 137 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~~ 137 (216)
+........+..+.+... ....++..+.. .....+....+||||+|++++++.
T Consensus 248 --~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~----~~~~~~~~~~~sLedif~~~~~~~ 300 (303)
T TIGR01288 248 --PYARRIEVSGETLFCYAR-----DPEQVRVQLRG----RTDLRLLQRPPNLEDVFLRLTGRE 300 (303)
T ss_pred --hccceeeeeCCEEEEEeC-----CHHHHHHHHhc----ccCceEEecCCCHHHHHHHHhccc
Confidence 111111223333333221 12344444431 123367888999999999998753
No 11
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.09 E-value=8.8e-11 Score=96.11 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=78.3
Q ss_pred hhhhhHH---------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHH
Q psy863 2 VLWCILL---------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQ 72 (216)
Q Consensus 2 ~iw~lI~---------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~ 72 (216)
.++++++ |++|||+|++++++||||.+|++|+++++|+.++| +.+|+....+.+.........++.
T Consensus 194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l-~~~f~~~k~~~~el~~~~~~~~l~---- 268 (325)
T COG4586 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL-QEQFGPYKEFSVELKQAKSLSQLA---- 268 (325)
T ss_pred HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHH-HHHhCCceEEEEEEcccccchhcc----
Confidence 3566676 99999999999999999999999999999999999 999998766666544211111110
Q ss_pred hhCCCcEEeeecCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCcceEEeecCCHHHHHHhhccc
Q psy863 73 SHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDL 136 (216)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~ 136 (216)
.++.+... .+..+.+.... ....+.+..+ ..++.+.+..+..++.|++--++.+.
T Consensus 269 -~l~d~~~~--~~~~~~~~~~r---~~~~~~i~~~---~~e~~v~Dl~v~d~~ie~vi~r~y~~ 323 (325)
T COG4586 269 -LLGDVTIE--EGLNIKNDVSR---EESADIIAKL---LAEFEVRDLTVEDPEIEDVIRRIYQK 323 (325)
T ss_pred -ccchhhhh--cccchhhcchh---HHHHHHHHHH---HHhhhhccCCCCCCcHHHHHHHHHhc
Confidence 01111111 12222222111 1112223322 23567889999999999998887664
No 12
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.9e-10 Score=90.41 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=41.2
Q ss_pred hhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 3 LWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 3 iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
+.++|+ ||+|||.|+|+|.+|||++++++|++++.|+++.+ ..+.+
T Consensus 172 ~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l-~~r~~ 225 (245)
T COG4555 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL-DARTV 225 (245)
T ss_pred HHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH-HHHHh
Confidence 456666 99999999999999999999999999999999999 76644
No 13
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.26 E-value=3.7e-07 Score=76.56 Aligned_cols=38 Identities=13% Similarity=-0.065 Sum_probs=36.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
|+|.||+|+||-++.|||+||++|+++..|||+++ -..
T Consensus 218 IvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI-l~~ 255 (386)
T COG4175 218 IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI-LLN 255 (386)
T ss_pred EEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH-HcC
Confidence 99999999999999999999999999999999999 443
No 14
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=98.17 E-value=9.9e-06 Score=55.29 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=56.3
Q ss_pred eccccccccccCceEEEEEEECCccCHHHHHHHHHhhCCCcEEeee-cCcEEEEEecCCCCCcHHHHHHHHHhhhhhCCc
Q psy863 38 GFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNT-QSSQITYTLPTQDTSPFPALFATLEEKKSALGI 116 (216)
Q Consensus 38 Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 116 (216)
|+++++ |++++... +.+.... .... +. .++++..... .++.+.+.+... ....++++.+.+ .+. |
T Consensus 1 G~~~ei-K~~~~~~~-~~i~~~~--~~~~----l~-~~~~v~~v~~~~~~~~~i~l~~~--~~~~~ll~~l~~--~g~-I 66 (84)
T PF13732_consen 1 GTLEEI-KKQYGKNK-ITIETDG--DLEE----LE-ELPGVESVEQDGDGKLRIKLEDE--ETANELLQELIE--KGI-I 66 (84)
T ss_pred CCHHHH-HHHcCCCE-EEEEECC--CHHH----Hh-hCCCeEEEEEeCCcEEEEEECCc--ccHHHHHHHHHh--CCC-e
Confidence 789999 99998764 4444432 2222 22 2466655443 344477777643 345889998884 366 9
Q ss_pred ceEEeecCCHHHHHHhhc
Q psy863 117 SSIGIACTTIEEVFLKVG 134 (216)
Q Consensus 117 ~~~~~~~~sLEdvFl~l~ 134 (216)
.+|....|||+|+|++.+
T Consensus 67 ~~f~~~~PSL~DIFi~~V 84 (84)
T PF13732_consen 67 RSFEEEEPSLEDIFIEVV 84 (84)
T ss_pred eEEEEcCCCHHHHHHhhC
Confidence 999999999999999753
No 15
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.16 E-value=8.2e-07 Score=71.90 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=41.9
Q ss_pred hhhhhHH---------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 2 VLWCILL---------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 2 ~iw~lI~---------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+||+++. .|+.||++.-++.+||||++|++|+++..++..++ ...
T Consensus 179 ~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l-~~~ 232 (252)
T COG1124 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL-LSH 232 (252)
T ss_pred HHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh-hcC
Confidence 6899988 99999999999999999999999999999999998 654
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.15 E-value=9.4e-07 Score=72.17 Aligned_cols=38 Identities=11% Similarity=-0.059 Sum_probs=36.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
|++.||+|+||-+++|||++|++|+++-.|+|+++ .++
T Consensus 189 ivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i-l~~ 226 (309)
T COG1125 189 IVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI-LAN 226 (309)
T ss_pred EEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH-HhC
Confidence 99999999999999999999999999999999999 543
No 17
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.07 E-value=2.5e-06 Score=73.81 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=35.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ .+
T Consensus 188 vi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~-~~ 224 (353)
T TIGR03265 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI-YR 224 (353)
T ss_pred EEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 99999999999999999999999999999999988 54
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.04 E-value=2.8e-06 Score=73.21 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+|+++.++|||+++|++|+++..|++.++ ..
T Consensus 194 iiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v-~~ 230 (343)
T TIGR02314 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI-FS 230 (343)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hc
Confidence 99999999999999999999999999999999887 53
No 19
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.04 E-value=4e-06 Score=73.77 Aligned_cols=35 Identities=14% Similarity=-0.035 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|++++.|+++++
T Consensus 192 IIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 192 AVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999873
No 20
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.02 E-value=3e-06 Score=68.65 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=35.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
+++.||+++++..+|||++++.+||++++|+++++ ..
T Consensus 199 ~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el-~~ 235 (263)
T COG1127 199 VIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL-LA 235 (263)
T ss_pred EEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH-Hh
Confidence 89999999999999999999999999999999999 54
No 21
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.00 E-value=3.9e-06 Score=72.89 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=35.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++|+..+||||++|++|+++..|+++++ ..+
T Consensus 192 il~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~-~~~ 229 (362)
T TIGR03258 192 ILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL-YDA 229 (362)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-HhC
Confidence 89999999999999999999999999999999998 543
No 22
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=3.7e-06 Score=72.14 Aligned_cols=37 Identities=8% Similarity=-0.062 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++||||++|++|+++..|+.+++ ..
T Consensus 212 ii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i-~~ 248 (330)
T PRK15093 212 ILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL-VT 248 (330)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH-Hh
Confidence 99999999999999999999999999999999888 54
No 23
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=4.6e-06 Score=70.17 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|++++.|+++++
T Consensus 198 vi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 198 IILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999887
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=5.1e-06 Score=71.87 Aligned_cols=37 Identities=14% Similarity=-0.012 Sum_probs=35.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
+|++||+++|+..+||||++|++|+++..|+++++ .+
T Consensus 190 ii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~-~~ 226 (351)
T PRK11432 190 SLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL-YR 226 (351)
T ss_pred EEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 99999999999999999999999999999999988 54
No 25
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.96 E-value=4.9e-06 Score=72.68 Aligned_cols=37 Identities=16% Similarity=-0.073 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+.++||||++|++|+++..|+++++ ..
T Consensus 218 II~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei-~~ 254 (382)
T TIGR03415 218 IIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI-VL 254 (382)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH-hh
Confidence 99999999999999999999999999999999988 54
No 26
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.96 E-value=5e-06 Score=74.76 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=46.0
Q ss_pred hhhhhHH---------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEE
Q psy863 2 VLWCILL---------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLT 55 (216)
Q Consensus 2 ~iw~lI~---------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~ 55 (216)
+|.++|+ +|++||+|.-+.++|||+++|.+|+++..|+++++ .++....|.-.
T Consensus 192 qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i-~~~p~hpYT~~ 253 (539)
T COG1123 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI-LSNPQHPYTRG 253 (539)
T ss_pred HHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHH-HhccCCcccHH
Confidence 4556666 99999999999999999999999999999999999 87776666543
No 27
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=5.1e-06 Score=69.91 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=34.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++||||++|++|++++.|+++++
T Consensus 197 il~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 197 VVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999987
No 28
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=5.4e-06 Score=69.87 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|++++.|+++++
T Consensus 199 viiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 233 (290)
T PRK13634 199 TVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233 (290)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999887
No 29
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=4.8e-06 Score=71.37 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++++.++||||++|.+|+++..|+++++ ...
T Consensus 207 il~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~-~~~ 244 (326)
T PRK11022 207 LVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI-FRA 244 (326)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH-hhC
Confidence 99999999999999999999999999999999998 543
No 30
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.95 E-value=5.5e-06 Score=70.94 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=35.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++|+..+|||+++|++|+++..|+++++ .++
T Consensus 154 iiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~-~~~ 191 (325)
T TIGR01187 154 FVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI-YEE 191 (325)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-HhC
Confidence 99999999999999999999999999999999988 543
No 31
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=4.7e-06 Score=69.80 Aligned_cols=35 Identities=14% Similarity=-0.019 Sum_probs=34.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|++.||.|+-+.++|||+++|++|+++..|+..++
T Consensus 195 IvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 195 IVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred EEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999999998
No 32
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=6.1e-06 Score=71.57 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..+
T Consensus 188 ii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~-~~~ 225 (356)
T PRK11650 188 SLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV-YEK 225 (356)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH-HhC
Confidence 99999999999999999999999999999999988 543
No 33
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.93 E-value=5.3e-06 Score=71.20 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=35.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++++.++||||++|++|+++..|+++++ .+.
T Consensus 215 il~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i-~~~ 252 (330)
T PRK09473 215 IIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV-FYQ 252 (330)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH-HhC
Confidence 99999999999999999999999999999999998 543
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.92 E-value=6.5e-06 Score=71.29 Aligned_cols=37 Identities=8% Similarity=-0.005 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
+|++||+++|+..+||||++|++|+++..|+++++ ..
T Consensus 190 ii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i-~~ 226 (353)
T PRK10851 190 SVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV-WR 226 (353)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 89999999999999999999999999999999988 54
No 35
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=6.4e-06 Score=68.91 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|++++.|+++++
T Consensus 191 vli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 191 VIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 99999999999999999999999999999999888
No 36
>KOG0059|consensus
Probab=97.92 E-value=1e-05 Score=77.86 Aligned_cols=95 Identities=36% Similarity=0.524 Sum_probs=74.1
Q ss_pred hceEEEeeCCEEEEEeccccccccccCceEEEEEEECCccCHHHHHHHHHhhCCCcEEeeecCcEEEEEecCCCCCcHHH
Q psy863 23 IRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPA 102 (216)
Q Consensus 23 cDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (216)
+|||+||.+|+++ ++..+ |+++|.+|++++.. .+...++++.|+++..... ...+.+|.......
T Consensus 13 ~Dri~i~s~g~l~---s~~~l-k~~~g~gy~l~l~~-------~~~~~~~~~~p~~~~~~~~--~~~~~lp~~~~~~~-- 77 (885)
T KOG0059|consen 13 GDRIVIMSHGKLK---SSLFL-KRKLGSGYHLTLVL-------QVTLFIQQHIPDARLVECP--KLVYLLPLKYRREF-- 77 (885)
T ss_pred ecceeheeCCeec---cchHH-HHhhCCCceEEeHH-------HHHHHHHhhCccceecccc--cccccCChhccccc--
Confidence 8999999999999 99999 99999999999864 6677788889988877655 55566665544432
Q ss_pred HHHHHHhhhhhCCcceEEeecCCHHHHHHhhccccc
Q psy863 103 LFATLEEKKSALGISSIGIACTTIEEVFLKVGDLAS 138 (216)
Q Consensus 103 l~~~l~~~~~~~~i~~~~~~~~sLEdvFl~l~~~~~ 138 (216)
.+..+. .+.++.+..+++|++|+++.+..+
T Consensus 78 ~~~~l~------~~~~~~~~~t~l~~vfl~~~~~~~ 107 (885)
T KOG0059|consen 78 LFRGLD------LIASFGVSLTTLEEVFLKLGGESD 107 (885)
T ss_pred hhhhhh------cccccccccccHHHHHhhcccccc
Confidence 222222 177899999999999999987654
No 37
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.92 E-value=6.4e-06 Score=71.52 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++|+.++||||++|++|+++..|+++++ ..+
T Consensus 183 ii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei-~~~ 220 (363)
T TIGR01186 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI-LRN 220 (363)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH-HhC
Confidence 99999999999999999999999999999999998 543
No 38
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.90 E-value=7.5e-06 Score=68.93 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=36.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
+|+.||+|.-+.++||||+||..|+++..|+.+++ ...-
T Consensus 207 iilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i-~~~P 245 (316)
T COG0444 207 LILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI-FKNP 245 (316)
T ss_pred EEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH-hcCC
Confidence 99999999999999999999999999999999998 5543
No 39
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=7.1e-06 Score=69.66 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|++++.|+++++
T Consensus 218 iiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 218 IILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred EEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999887
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=7.5e-06 Score=70.63 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++++|||+++|++|+++..|+++++ ...
T Consensus 194 iilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~-~~~ 231 (343)
T PRK11153 194 IVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV-FSH 231 (343)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-HhC
Confidence 99999999999999999999999999999999988 643
No 41
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=8.5e-06 Score=68.08 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=33.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|++++.|+++++
T Consensus 191 ili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 191 VIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998766
No 42
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=9.6e-06 Score=67.90 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=39.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQL 54 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l 54 (216)
.++.||+++|+.++||||++|++|+|...|+++++ -..-+..+..
T Consensus 191 tvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev-~~~P~s~fV~ 235 (345)
T COG1118 191 TVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV-YDHPASRFVA 235 (345)
T ss_pred EEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH-hcCCCcccee
Confidence 89999999999999999999999999999999999 6654444433
No 43
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=7.5e-06 Score=70.18 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++||||++|++|+++..|+.+++ .+
T Consensus 208 il~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~-~~ 244 (327)
T PRK11308 208 YVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI-FN 244 (327)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH-hc
Confidence 99999999999999999999999999999999988 54
No 44
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=9.3e-06 Score=68.30 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++++|||+++|++|+++..|+++++ ..
T Consensus 198 vlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~ 234 (287)
T PRK13641 198 VILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI-FS 234 (287)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-hc
Confidence 99999999999999999999999999999999887 43
No 45
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=9.4e-06 Score=70.88 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=35.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|++||+++|+..+|||+++|++|+++..|+++++ ..+
T Consensus 203 ii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~-~~~ 240 (377)
T PRK11607 203 CVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI-YEH 240 (377)
T ss_pred EEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHH-HhC
Confidence 99999999999999999999999999999999998 543
No 46
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=1e-05 Score=67.93 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+|||+++|++|++++.|+++++ ..
T Consensus 195 illvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~-~~ 231 (283)
T PRK13636 195 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV-FA 231 (283)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH-hc
Confidence 99999999999999999999999999999999887 44
No 47
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.85 E-value=9.3e-06 Score=69.73 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++||||++|.+|+++..|+++++ ..
T Consensus 215 il~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i-~~ 251 (331)
T PRK15079 215 LIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV-YH 251 (331)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hc
Confidence 99999999999999999999999999999999988 54
No 48
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.83 E-value=1.1e-05 Score=69.87 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++|+..+|||+++|++|+++..|+++++ .+.
T Consensus 182 ii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i-~~~ 219 (352)
T PRK11144 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV-WAS 219 (352)
T ss_pred EEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH-HhC
Confidence 89999999999999999999999999999999998 543
No 49
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.83 E-value=1.1e-05 Score=70.32 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=35.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++|+..+||||++|++|+++..|++.++ ..+
T Consensus 198 iI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i-~~~ 235 (375)
T PRK09452 198 FVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI-YEE 235 (375)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-HhC
Confidence 89999999999999999999999999999999988 543
No 50
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=1.2e-05 Score=66.57 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++|||+++|++|+++..|+++++ ..
T Consensus 206 iiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~ 242 (258)
T PRK14268 206 IVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI-FH 242 (258)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH-hc
Confidence 99999999999999999999999999999999888 54
No 51
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.81 E-value=1.3e-05 Score=69.85 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..
T Consensus 187 vI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i-~~ 223 (369)
T PRK11000 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL-YH 223 (369)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 99999999999999999999999999999999887 54
No 52
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=1.3e-05 Score=67.32 Aligned_cols=35 Identities=11% Similarity=-0.109 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|++++.|++.++
T Consensus 199 vl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 199 IILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999887
No 53
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.81 E-value=1.6e-05 Score=65.50 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=38.3
Q ss_pred hhhhhHH---------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 2 VLWCILL---------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~---------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+++++++ ||+++|+++-|-+.||++++|++|++++.|+|.++
T Consensus 176 evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 176 EVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 4566666 99999999999999999999999999999999887
No 54
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.81 E-value=1.4e-05 Score=65.33 Aligned_cols=35 Identities=11% Similarity=-0.052 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|++.++
T Consensus 189 iii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 189 MVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999998887
No 55
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.79 E-value=1.5e-05 Score=65.50 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+|||+++|++|+++..|+++++ ..
T Consensus 196 iiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~ 232 (247)
T TIGR00972 196 IVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI-FT 232 (247)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 99999999999999999999999999999999887 43
No 56
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=1.4e-05 Score=66.06 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++++|||+++|++|+++..|+++++ ..
T Consensus 207 iiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~ 243 (259)
T PRK14274 207 IVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM-FS 243 (259)
T ss_pred EEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH-hh
Confidence 89999999999999999999999999999999987 53
No 57
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=1.5e-05 Score=68.18 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|++++.|+++++
T Consensus 229 iiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 229 VFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 58
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=1.2e-05 Score=70.69 Aligned_cols=37 Identities=14% Similarity=-0.035 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..
T Consensus 218 IIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l-~~ 254 (400)
T PRK10070 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI-LN 254 (400)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH-Hh
Confidence 89999999999999999999999999999999887 54
No 59
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.77 E-value=1.8e-05 Score=68.59 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++++..+|||+++|++|+++..|+++++ ...
T Consensus 185 iiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~~ 222 (354)
T TIGR02142 185 ILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV-WAS 222 (354)
T ss_pred EEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH-hcC
Confidence 89999999999999999999999999999999988 644
No 60
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=1.7e-05 Score=65.44 Aligned_cols=37 Identities=16% Similarity=-0.013 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++|+++..|+++++ ..
T Consensus 202 vii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~ 238 (254)
T PRK14273 202 IIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL-FF 238 (254)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 89999999999999999999999999999999888 53
No 61
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=1.8e-05 Score=67.97 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=34.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||.++++.++||||++|++|+++..|+++++
T Consensus 277 ii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 277 IIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999998
No 62
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=1.8e-05 Score=65.11 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|+++..|+++++
T Consensus 199 iiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 199 IVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred EEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 63
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.75 E-value=1.9e-05 Score=64.83 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 197 vi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 197 MVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 64
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.75 E-value=2e-05 Score=64.85 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++||++++|++|+++..|+++++
T Consensus 186 vi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 186 VVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999998877
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=1.9e-05 Score=65.72 Aligned_cols=37 Identities=14% Similarity=-0.038 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++++||++++|++|+++..|+++++ .+
T Consensus 214 iii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~ 250 (269)
T cd03294 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI-LT 250 (269)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH-Hh
Confidence 89999999999999999999999999999999888 54
No 66
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.75 E-value=1.3e-05 Score=64.43 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=36.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
||++||++++++.+||++++|++|++++.|+.++. ++.++
T Consensus 156 ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~~~~ 195 (213)
T PRK15177 156 LIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA-TALFE 195 (213)
T ss_pred EEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH-HHHHH
Confidence 89999999999999999999999999999999998 65543
No 67
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.74 E-value=1.8e-05 Score=65.15 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|+++..|+++++
T Consensus 201 vii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 201 IIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred EEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 68
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.74 E-value=2.1e-05 Score=63.93 Aligned_cols=37 Identities=16% Similarity=-0.034 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+|||+++|++|+++..|+++++ ..
T Consensus 179 iii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~ 215 (230)
T TIGR02770 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI-FY 215 (230)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 89999999999999999999999999999999888 53
No 69
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=1.8e-05 Score=65.85 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=34.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++|||+++|++|+++..|+++++ ..
T Consensus 216 iii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~-~~ 252 (268)
T PRK14248 216 IIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI-FT 252 (268)
T ss_pred EEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 89999999999999999999999999999999887 43
No 70
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=1.7e-05 Score=65.78 Aligned_cols=37 Identities=11% Similarity=-0.056 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
|++.||.++|+.++||++++|.+||+.+.|..+++ -.
T Consensus 182 IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v-~~ 218 (352)
T COG4148 182 ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV-WG 218 (352)
T ss_pred EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH-hc
Confidence 99999999999999999999999999999999887 44
No 71
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=2.1e-05 Score=65.79 Aligned_cols=35 Identities=14% Similarity=-0.043 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|++++.|+++++
T Consensus 190 il~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 190 IIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 72
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=2.1e-05 Score=64.70 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++|||+++|++|+++..|+++++ .+
T Consensus 198 iiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~-~~ 234 (250)
T PRK14245 198 IVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI-FT 234 (250)
T ss_pred EEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH-hc
Confidence 99999999999999999999999999999999988 54
No 73
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=2.1e-05 Score=64.79 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|+++..|+++++
T Consensus 200 iiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 200 IIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred EEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 74
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=2.2e-05 Score=65.43 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|++++.|+++++
T Consensus 189 ii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 189 VIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 75
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=2.2e-05 Score=64.55 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=38.4
Q ss_pred hhhhHH-------hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 3 LWCILL-------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 3 iw~lI~-------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
++++|+ ||++||+++++..+|||+++|++|+++..|+++++ .+
T Consensus 185 l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~ 234 (250)
T PRK14262 185 IEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI-VE 234 (250)
T ss_pred HHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH-Hh
Confidence 455555 99999999999999999999999999999999888 54
No 76
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=2.1e-05 Score=64.63 Aligned_cols=37 Identities=5% Similarity=-0.018 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++|||+++|++|+++..|++.++ ..
T Consensus 200 ii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~ 236 (252)
T PRK14239 200 MLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM-FM 236 (252)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 99999999999999999999999999999999887 43
No 77
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=2.4e-05 Score=65.00 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|+++..|+++++
T Consensus 201 iii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 201 VIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 89999999999999999999999999999998887
No 78
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.72 E-value=2.5e-05 Score=64.55 Aligned_cols=35 Identities=14% Similarity=-0.020 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 205 iiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 205 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999999887
No 79
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=2.3e-05 Score=64.56 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 201 iii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 201 IVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred EEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 80
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=2.3e-05 Score=63.99 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+||++++|++|++++.|+++++
T Consensus 190 iii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 190 VLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999887
No 81
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=2.4e-05 Score=65.78 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|+++..|+++++
T Consensus 204 iiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 204 IIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998887
No 82
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.70 E-value=2.6e-05 Score=63.43 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=32.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|+++..|++.++
T Consensus 168 ii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 168 VLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 89999999999999999999999999999987665
No 83
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=2.6e-05 Score=63.62 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|++++.|+++++
T Consensus 183 ili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999998877
No 84
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.69 E-value=2.4e-05 Score=64.57 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|+++..|+.+++
T Consensus 190 iii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 190 VVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999999999999999998877
No 85
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.69 E-value=2.8e-05 Score=64.75 Aligned_cols=37 Identities=8% Similarity=-0.171 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++|||+++|++|+++..|+++++ .+
T Consensus 197 iiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~ 233 (269)
T PRK11831 197 CVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL-QA 233 (269)
T ss_pred EEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH-hc
Confidence 89999999999999999999999999999999888 54
No 86
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.67 E-value=2.8e-05 Score=72.21 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=34.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+||||++|++|+++..|+++++
T Consensus 517 vi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 517 YLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999988
No 87
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=2.9e-05 Score=63.74 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 197 ii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 197 IVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998887
No 88
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.66 E-value=3.3e-05 Score=63.09 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||.+++++++|||+++|++|+++..|+.+++ .+
T Consensus 184 vli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~-~~ 220 (237)
T TIGR00968 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV-YD 220 (237)
T ss_pred EEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH-Hc
Confidence 99999999999999999999999999999999888 54
No 89
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=3e-05 Score=63.72 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|++...|+++++
T Consensus 198 iii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 198 IVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 89999999999999999999999999999999887
No 90
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=3e-05 Score=64.96 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=34.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++. |||+++|++|++++.|+++++ ...
T Consensus 198 illvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~-~~~ 234 (280)
T PRK13633 198 IILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI-FKE 234 (280)
T ss_pred EEEEecChHHHhc-CCEEEEEECCEEEEecCHHHH-hcC
Confidence 9999999999987 999999999999999999998 543
No 91
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.65 E-value=4.6e-05 Score=69.12 Aligned_cols=35 Identities=3% Similarity=-0.211 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+.+|++|++++.|+++++
T Consensus 456 iIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 456 VLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999887
No 92
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.64 E-value=3.8e-05 Score=63.47 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+||++.+|++|+++..|+++++ ..
T Consensus 205 ii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~-~~ 241 (258)
T PRK11701 205 VVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV-LD 241 (258)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH-hc
Confidence 89999999999999999999999999999999888 53
No 93
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.64 E-value=3.1e-05 Score=64.46 Aligned_cols=40 Identities=15% Similarity=-0.115 Sum_probs=36.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
||++||++++++.+||++++|++|++...|+++++ ..++.
T Consensus 196 iIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~-~~~~~ 235 (264)
T PRK13546 196 IFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV-LPKYE 235 (264)
T ss_pred EEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH-HHHhH
Confidence 99999999999999999999999999999999998 66543
No 94
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.64 E-value=3.2e-05 Score=63.54 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|+++..|+++++
T Consensus 198 iii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 198 IVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred EEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 95
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=3.8e-05 Score=62.86 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=34.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+|||+++|++|+++..|+++++ ..
T Consensus 189 vii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~ 225 (242)
T cd03295 189 IVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI-LR 225 (242)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH-Hc
Confidence 89999999999999999999999999999998887 53
No 96
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.63 E-value=3.3e-05 Score=64.41 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|+++..|+++++
T Consensus 220 iiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 220 IVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred EEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 89999999999999999999999999999999887
No 97
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.63 E-value=3.8e-05 Score=63.77 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 197 iii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 197 LAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 98
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=3.6e-05 Score=64.38 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 198 iiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred EEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 99
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=4e-05 Score=63.26 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|+++..|+++++
T Consensus 191 iii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 191 VVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999998877
No 100
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.62 E-value=3.8e-05 Score=63.85 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|++.++
T Consensus 215 iii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 215 IIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred EEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 101
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.62 E-value=4.1e-05 Score=63.56 Aligned_cols=37 Identities=8% Similarity=-0.171 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+|||+++|++|+++..|+++++ ..
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~ 240 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL-LS 240 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH-cC
Confidence 89999999999999999999999999999999998 54
No 102
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.62 E-value=4e-05 Score=63.06 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 200 iiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 200 MLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 103
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=3.8e-05 Score=64.15 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=36.3
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
.+|++++ ||++||++++++. |||+++|++|++++.|+++++
T Consensus 174 ~l~~~l~~l~~~g~til~~tH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 174 AVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHhh-CCEEEEEECCEEEEECCHHHH
Confidence 4566665 9999999999965 999999999999999999887
No 104
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.61 E-value=5.7e-05 Score=68.38 Aligned_cols=35 Identities=3% Similarity=-0.189 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|++++.|++++.
T Consensus 449 viivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 449 VLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999887
No 105
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=4e-05 Score=64.42 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+|||+++|++|+++..|++.++ ..
T Consensus 234 vIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~-~~ 270 (286)
T PRK14275 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL-FT 270 (286)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 89999999999999999999999999999999887 54
No 106
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.60 E-value=4.6e-05 Score=63.14 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|++++.|+++++
T Consensus 206 vii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 206 VVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999998877
No 107
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.59 E-value=4.5e-05 Score=62.91 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++|+++..|+++++ .+
T Consensus 194 il~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~-~~ 230 (254)
T PRK10418 194 MLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL-FN 230 (254)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH-hh
Confidence 99999999999999999999999999999999888 54
No 108
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.59 E-value=4.5e-05 Score=63.09 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 194 iii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 194 VIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred EEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 89999999999999999999999999999998887
No 109
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=4.3e-05 Score=62.85 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++|++...|+++++ ..
T Consensus 199 ilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~ 235 (251)
T PRK14249 199 IAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI-FS 235 (251)
T ss_pred EEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH-Hh
Confidence 99999999999999999999999999999999888 54
No 110
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.59 E-value=4.3e-05 Score=60.50 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=34.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|++|-|+..|.-.+|||..||++|+++++|+|+++
T Consensus 192 vLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 192 VLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred EEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999999999999999998
No 111
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=4.6e-05 Score=62.37 Aligned_cols=35 Identities=11% Similarity=-0.110 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|++.++
T Consensus 185 ii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 185 VIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred EEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 112
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.59 E-value=3.2e-05 Score=69.71 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=34.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
.++.||+|+-++++||||++|.+|+++..|+.+.+ ..
T Consensus 483 ~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v-~~ 519 (539)
T COG1123 483 YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV-FE 519 (539)
T ss_pred EEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH-hc
Confidence 89999999999999999999999999999988877 54
No 113
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.58 E-value=4.3e-05 Score=63.55 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 215 iiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 215 IVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred EEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 114
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.58 E-value=4.5e-05 Score=63.58 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 219 iiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 219 IIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 115
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.58 E-value=4.6e-05 Score=63.38 Aligned_cols=37 Identities=8% Similarity=-0.077 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++|+++..|+++++ ..
T Consensus 203 viivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~ 239 (267)
T PRK15112 203 YIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV-LA 239 (267)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH-hc
Confidence 89999999999999999999999999999999888 54
No 116
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=4.7e-05 Score=62.59 Aligned_cols=35 Identities=14% Similarity=-0.019 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|+++..|+++++
T Consensus 199 iiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 199 FIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred EEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 117
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=4.7e-05 Score=62.47 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 194 iii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 194 MIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred EEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999887
No 118
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.57 E-value=3.2e-05 Score=66.58 Aligned_cols=35 Identities=11% Similarity=-0.071 Sum_probs=34.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
.|+.||+-+||-.+||||++|++|++.-.|+|+++
T Consensus 190 ~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 190 FVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred EEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 89999999999999999999999999999999998
No 119
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=4.9e-05 Score=62.49 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++|+++..|+++++ ..
T Consensus 200 iii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~-~~ 236 (252)
T PRK14272 200 IIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL-FT 236 (252)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 89999999999999999999999999999999887 43
No 120
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=4.6e-05 Score=62.78 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++++|||+++|++|+++..|+++++ ..
T Consensus 201 vii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~ 237 (253)
T PRK14261 201 VIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI-FE 237 (253)
T ss_pred EEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH-Hh
Confidence 99999999999999999999999999999999888 53
No 121
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.56 E-value=7.1e-05 Score=67.76 Aligned_cols=35 Identities=9% Similarity=-0.147 Sum_probs=33.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+.+|++|+++..|+++++
T Consensus 448 viivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 448 IILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 89999999999999999999999999999998777
No 122
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=5.2e-05 Score=62.78 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 208 iii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 208 VVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 123
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.55 E-value=6e-05 Score=60.98 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+||++.+| +|+++..|+++++ ..
T Consensus 166 vii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~-~~ 201 (223)
T TIGR03771 166 ILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL-QD 201 (223)
T ss_pred EEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh-cC
Confidence 999999999999999999999 8999999999888 54
No 124
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=4.9e-05 Score=62.99 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeC-----CEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFP-----GYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~-----G~li~~Gs~~~L~k~ 46 (216)
||++||++++++++|||+++|++ |+++..|+++++ ..
T Consensus 204 iiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~-~~ 245 (261)
T PRK14258 204 MVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI-FN 245 (261)
T ss_pred EEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHH-Hh
Confidence 89999999999999999999999 999999999998 54
No 125
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.55 E-value=5.3e-05 Score=60.63 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
.++.||.|.-|.++||||++|++|+++.+|+|+++
T Consensus 189 MivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 189 MIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred EEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 88999999999999999999999999999999998
No 126
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.55 E-value=6.9e-05 Score=67.82 Aligned_cols=35 Identities=9% Similarity=-0.133 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 194 vii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 194 IVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999999999876
No 127
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=5.4e-05 Score=62.80 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=34.4
Q ss_pred hhhcCCChhHHHhhhceEEEee--------CCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF--------PGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~--------~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++|||+++|+ +|+++..|+.+++ .+
T Consensus 201 ii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~-~~ 245 (261)
T PRK14263 201 IALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI-FQ 245 (261)
T ss_pred EEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHH-Hh
Confidence 8999999999999999999995 8999999999888 43
No 128
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.54 E-value=5.4e-05 Score=62.86 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=34.8
Q ss_pred hhhcCCChhHHHhhhceEEEee---------CCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF---------PGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~---------~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.++|||+++|+ +|+++..|+++++ ..
T Consensus 203 vi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~-~~ 248 (264)
T PRK14243 203 IIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI-FN 248 (264)
T ss_pred EEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH-Hh
Confidence 9999999999999999999998 8999999999998 53
No 129
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=5.7e-05 Score=62.71 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|+++..|+.+++
T Consensus 213 iiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 213 ILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999999887
No 130
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=5.9e-05 Score=63.19 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=33.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++. |||+++|++|++++.|+++++ ..
T Consensus 194 ilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~-~~ 229 (279)
T PRK13635 194 VLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI-FK 229 (279)
T ss_pred EEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH-hc
Confidence 8999999999986 999999999999999999887 43
No 131
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.52 E-value=4.6e-05 Score=70.81 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++||||++|++|+++..|+++++
T Consensus 222 vi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 222 VIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 99999999999999999999999999999998877
No 132
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.52 E-value=6.5e-05 Score=62.76 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=33.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 208 viiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 208 VLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 89999999999999999999999999999998877
No 133
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=6.8e-05 Score=62.08 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++|+++..|+++++
T Consensus 205 iilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999888
No 134
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=6.2e-05 Score=62.27 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=37.2
Q ss_pred hhhhhHH-------hhhcCCChhHHHhhhceEEEee-----CCEEEEEeccccc
Q psy863 2 VLWCILL-------IIVPIHVTSNTRDSIRLLATYF-----PGYAMICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~-------IilSTH~L~EaE~lcDrI~Il~-----~G~li~~Gs~~~L 43 (216)
.++++|+ ||++||+++++..+|||+++|+ +|+++..|++.++
T Consensus 188 ~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 188 KVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 3455555 9999999999999999999998 5999999999887
No 135
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.51 E-value=6.8e-05 Score=61.70 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=34.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+.+|++|+++..|+++++ ..
T Consensus 202 ii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~-~~ 238 (253)
T TIGR02323 202 VIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV-LD 238 (253)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH-hc
Confidence 89999999999999999999999999999999887 53
No 136
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.51 E-value=7.1e-05 Score=67.93 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++..|+++++
T Consensus 193 iiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 193 IVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999998876
No 137
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.51 E-value=7.6e-05 Score=62.14 Aligned_cols=37 Identities=5% Similarity=-0.208 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++|+++..|++.++ ..
T Consensus 205 iiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~-~~ 241 (268)
T PRK10419 205 CLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK-LT 241 (268)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc-cC
Confidence 89999999999999999999999999999999988 53
No 138
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.50 E-value=8.2e-05 Score=67.48 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=33.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|++++.|+++++
T Consensus 198 iiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 198 IVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999999999999998876
No 139
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.49 E-value=6.3e-05 Score=68.03 Aligned_cols=40 Identities=13% Similarity=-0.096 Sum_probs=36.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
||++||++++++.+|||+++|++|+++..|+++++ ...+.
T Consensus 196 IIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el-~~~~~ 235 (549)
T PRK13545 196 IFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV-VDHYD 235 (549)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH-HhhHH
Confidence 99999999999999999999999999999999988 66543
No 140
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.49 E-value=8.6e-05 Score=67.02 Aligned_cols=42 Identities=12% Similarity=-0.066 Sum_probs=37.4
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+++++|+ ||++||+++++..+|||+++|++|+++..|+++++
T Consensus 172 ~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 172 HLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 3556665 99999999999999999999999999999998776
No 141
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=8.9e-05 Score=67.19 Aligned_cols=35 Identities=9% Similarity=-0.137 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+.+|++|+++..|+++++
T Consensus 196 vi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 196 CIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999876
No 142
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.0001 Score=66.06 Aligned_cols=35 Identities=11% Similarity=-0.072 Sum_probs=32.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecc-ccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFK-LLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~-~~L 43 (216)
||+.||.|+|+-++||||.||++|+.+..+.. .++
T Consensus 198 ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 198 IIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred EEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 99999999999999999999999999999883 544
No 143
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=7.4e-05 Score=61.36 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+||++.+|++|+++..|+++++
T Consensus 198 iii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 198 IVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred EEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 144
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=7.5e-05 Score=62.64 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=32.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++ .|||+++|++|++++.|+++++
T Consensus 197 vli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 197 VISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred EEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999996 6999999999999999999887
No 145
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00011 Score=60.77 Aligned_cols=35 Identities=11% Similarity=-0.100 Sum_probs=32.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+++.+|+.+..
T Consensus 187 viivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (257)
T PRK11247 187 VLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDLP 221 (257)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEeecccccC
Confidence 89999999999999999999999999999987644
No 146
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=7.8e-05 Score=62.36 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++|+++..|+++++ ..
T Consensus 215 iiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~-~~ 251 (276)
T PRK14271 215 VIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL-FS 251 (276)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 99999999999999999999999999999999888 54
No 147
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=7.7e-05 Score=62.48 Aligned_cols=34 Identities=9% Similarity=-0.152 Sum_probs=32.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++ .|||+++|++|+++..|+++++
T Consensus 194 ilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 194 VISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred EEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 999999999995 7999999999999999999887
No 148
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=7.7e-05 Score=61.62 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=33.3
Q ss_pred hhhcCCChhHHHhhhceEEEee------CCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF------PGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~------~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|+ +|+++..|+++++
T Consensus 200 viivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 200 IVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred EEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 9999999999999999999997 8999999999887
No 149
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=8e-05 Score=62.03 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=32.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeC-----------CEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFP-----------GYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~-----------G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++ |+++..|++.++
T Consensus 206 iiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 206 IVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251 (269)
T ss_pred EEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence 89999999999999999999996 678999998887
No 150
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.45 E-value=7e-05 Score=62.69 Aligned_cols=36 Identities=6% Similarity=-0.108 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||.+++++. ||||++|++|+++..|++++| .+
T Consensus 190 ii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l-~~ 225 (275)
T cd03289 190 VILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKL-LN 225 (275)
T ss_pred EEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHH-hh
Confidence 9999999999976 999999999999999999998 55
No 151
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=9.1e-05 Score=60.91 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|++|+++..|++.++
T Consensus 200 ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 200 IILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999887
No 152
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.43 E-value=9.6e-05 Score=67.35 Aligned_cols=35 Identities=14% Similarity=-0.032 Sum_probs=33.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+||||++|++|+++..|+++++
T Consensus 210 vi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 210 LLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred EEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999998876
No 153
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=9.2e-05 Score=61.60 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++.. |||+++|++|++++.|+++++ ..
T Consensus 196 iiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~-~~ 231 (269)
T PRK13648 196 IISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI-FD 231 (269)
T ss_pred EEEEecCchHHhc-CCEEEEEECCEEEEecCHHHH-hc
Confidence 8999999999986 999999999999999999887 43
No 154
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.41 E-value=9.6e-05 Score=66.67 Aligned_cols=35 Identities=6% Similarity=-0.029 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++++|||+++|++|+++..|+++++
T Consensus 188 vii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 188 LVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred EEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999999999999999998775
No 155
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00012 Score=61.14 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEee---------CCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF---------PGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~---------~G~li~~Gs~~~L 43 (216)
||++||+++++.++|||+++|+ +|+++..|+++++
T Consensus 213 iii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 213 IIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred EEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 9999999999999999999998 8999999999888
No 156
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00014 Score=60.85 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=33.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++. .|||+++|++|+++..|+++++ .+
T Consensus 194 iil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~-~~ 229 (277)
T PRK13642 194 VLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSEL-FA 229 (277)
T ss_pred EEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHH-hc
Confidence 999999999997 5999999999999999999887 54
No 157
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00013 Score=61.85 Aligned_cols=43 Identities=12% Similarity=-0.050 Sum_probs=36.9
Q ss_pred hhhhHH-------hhhcCCChhHHHhhhceE-EEeeCCEEEEEecccccccc
Q psy863 3 LWCILL-------IIVPIHVTSNTRDSIRLL-ATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 3 iw~lI~-------IilSTH~L~EaE~lcDrI-~Il~~G~li~~Gs~~~L~k~ 46 (216)
++++|+ ||++||+++++..+|||+ .+|++|+++..|+++++ .+
T Consensus 239 l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~-~~ 289 (305)
T PRK14264 239 IEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI-FE 289 (305)
T ss_pred HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHH-Hh
Confidence 455555 899999999999999997 57899999999999887 53
No 158
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.30 E-value=0.00019 Score=64.91 Aligned_cols=35 Identities=6% Similarity=-0.100 Sum_probs=33.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+.+|++|+++..|+++++
T Consensus 194 viiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 194 CVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred EEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 89999999999999999999999999999988765
No 159
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00013 Score=60.25 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=35.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
.++.||+++.+..+||||++|..|+++..|+.+++ ...
T Consensus 163 ~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~-~~~ 200 (268)
T COG4608 163 YLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV-FSN 200 (268)
T ss_pred EEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH-hhC
Confidence 89999999999999999999999999999999998 553
No 160
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00019 Score=60.35 Aligned_cols=35 Identities=9% Similarity=-0.133 Sum_probs=32.3
Q ss_pred hhhcCCChhHHHhhhceEE-EeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLA-TYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~-Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+|||++ +|++|+++..|++.++
T Consensus 232 iii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 232 VVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred EEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 8999999999999999975 6799999999998887
No 161
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00022 Score=59.45 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=32.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++++..+||+++++ +|+++..|+++++
T Consensus 195 viivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 195 MLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999999999999999777 8999999999887
No 162
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00021 Score=59.54 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=32.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++ .|||+++|++|++...|+++++
T Consensus 196 iii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 196 LISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred EEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence 899999999997 7999999999999999998887
No 163
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.20 E-value=0.00018 Score=62.59 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=42.9
Q ss_pred hhhhhHH---------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceE
Q psy863 2 VLWCILL---------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGY 52 (216)
Q Consensus 2 ~iw~lI~---------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~ 52 (216)
+|.++|+ +++.||+|.-+.++||||++|.+|+++..|+.+.+ ...-...|
T Consensus 195 QIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~l-F~~PqHpY 253 (534)
T COG4172 195 QILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL-FAAPQHPY 253 (534)
T ss_pred HHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHH-hhCCCChH
Confidence 5667777 99999999999999999999999999999999998 65543334
No 164
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.18 E-value=0.00025 Score=64.52 Aligned_cols=38 Identities=11% Similarity=-0.129 Sum_probs=34.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++.+|||+++|++|+++..|+++++ ..+
T Consensus 222 viivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~~ 259 (520)
T TIGR03269 222 MVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV-VAV 259 (520)
T ss_pred EEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHH-HHH
Confidence 99999999999999999999999999999988776 543
No 165
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.00028 Score=60.50 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=36.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|+.||+-.||..++|||++|++|++...|+|.++ -.+
T Consensus 187 ~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el-y~~ 224 (338)
T COG3839 187 TIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL-YER 224 (338)
T ss_pred EEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH-hhC
Confidence 89999999999999999999999999999999999 654
No 166
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00043 Score=57.21 Aligned_cols=33 Identities=12% Similarity=-0.069 Sum_probs=30.7
Q ss_pred hhhcCCChhHHHhhhceEEEee--CCEEEEEeccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF--PGYAMICGFKL 41 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~--~G~li~~Gs~~ 41 (216)
||++||+++++..+|||+++|+ +|+++..++++
T Consensus 182 viivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 182 VLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 8999999999999999999998 59999988875
No 167
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.05 E-value=0.00036 Score=60.77 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=34.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
-+|.||+|.-+..+||++++|++||++.+|+.+++ ..
T Consensus 480 YLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~i-f~ 516 (534)
T COG4172 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAV-FA 516 (534)
T ss_pred EEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHH-hc
Confidence 68899999999999999999999999999999998 54
No 168
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.01 E-value=0.00043 Score=57.12 Aligned_cols=34 Identities=6% Similarity=-0.124 Sum_probs=31.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|+ |+++..|+++++
T Consensus 174 iiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~ 207 (251)
T PRK09544 174 VLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVV 207 (251)
T ss_pred EEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHH
Confidence 9999999999999999999996 589999998887
No 169
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0004 Score=56.32 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=34.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++-|.++-|.+.||||+-|++||++++|++.++
T Consensus 201 vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 201 VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred EEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 99999999999999999999999999999999998
No 170
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00053 Score=62.53 Aligned_cols=42 Identities=17% Similarity=-0.102 Sum_probs=36.4
Q ss_pred hhhhhHH-----hhhcCCChhHHHhhhceEEEeeCCEE-EEEeccccc
Q psy863 2 VLWCILL-----IIVPIHVTSNTRDSIRLLATYFPGYA-MICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~G~l-i~~Gs~~~L 43 (216)
+++++|+ ||++||+++++.++|||+++|++|++ .+.|++++.
T Consensus 193 ~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 193 WLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 3556665 99999999999999999999999999 478988765
No 171
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00077 Score=61.05 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=30.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFK 40 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~ 40 (216)
||++||+++++..+|||+.+|++|+++..++.
T Consensus 193 iiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 193 ILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999987764
No 172
>PLN03211 ABC transporter G-25; Provisional
Probab=96.75 E-value=0.00061 Score=63.77 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=36.1
Q ss_pred hhhcCCChh-HHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTS-NTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~-EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||++||+++ ++.++||++++|++|++++.|+++++ ...+
T Consensus 259 vI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~-~~~f 298 (659)
T PLN03211 259 IVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA-MAYF 298 (659)
T ss_pred EEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHH-HHHH
Confidence 999999998 69999999999999999999999998 7554
No 173
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.00085 Score=62.63 Aligned_cols=43 Identities=19% Similarity=-0.023 Sum_probs=37.3
Q ss_pred hhhhHH-----hhhcCCChhHHHhhhceEEEeeCCEEE-EEecccccccc
Q psy863 3 LWCILL-----IIVPIHVTSNTRDSIRLLATYFPGYAM-ICGFKLLGNFE 46 (216)
Q Consensus 3 iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~G~li-~~Gs~~~L~k~ 46 (216)
++++|. ||++||++++++.+|||+++|++|+++ +.|+.++. .+
T Consensus 469 l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~-~~ 517 (638)
T PRK10636 469 LTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY-QQ 517 (638)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH-HH
Confidence 455555 899999999999999999999999997 88998887 54
No 174
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.71 E-value=0.00095 Score=61.27 Aligned_cols=41 Identities=12% Similarity=-0.065 Sum_probs=35.6
Q ss_pred hhhhHH-----hhhcCCChhHHHhhhceEEEeeCCEEE-EEeccccc
Q psy863 3 LWCILL-----IIVPIHVTSNTRDSIRLLATYFPGYAM-ICGFKLLG 43 (216)
Q Consensus 3 iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~G~li-~~Gs~~~L 43 (216)
++++|+ ||++||++++++.+||+|++|++|+++ +.|+.+++
T Consensus 202 l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 202 LEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 455555 999999999999999999999999987 78887764
No 175
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.70 E-value=0.00091 Score=56.21 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=33.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++ .|||+++|++|+++..|+++++ .+
T Consensus 212 IiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~-~~ 247 (282)
T cd03291 212 RILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL-QS 247 (282)
T ss_pred EEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHH-Hh
Confidence 999999999985 6999999999999999999888 54
No 176
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.00082 Score=53.89 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=33.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|+..=|+|+-+...||||.+|++||+++.|+|++.
T Consensus 194 V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 194 VLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred EEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 67777999999999999999999999999999887
No 177
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.50 E-value=0.0013 Score=61.13 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=35.8
Q ss_pred hhhcCCChh-HHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTS-NTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~-EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||+|||..+ ++..+||++++|++|++++.|+++++ ..-+
T Consensus 219 vi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~-~~~f 258 (617)
T TIGR00955 219 IICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA-VPFF 258 (617)
T ss_pred EEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH-HHHH
Confidence 999999995 89999999999999999999999998 6544
No 178
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.45 E-value=0.0019 Score=59.60 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
||++||.+++++. ||+|++|++|+++..|+.+++ .++.+
T Consensus 523 vI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l-~~~~~ 561 (585)
T TIGR01192 523 TFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQEL-IQKDG 561 (585)
T ss_pred EEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHH-HHCCC
Confidence 9999999999966 999999999999999999999 66544
No 179
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.38 E-value=0.0021 Score=58.97 Aligned_cols=35 Identities=9% Similarity=-0.081 Sum_probs=32.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEE-EEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAM-ICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li-~~Gs~~~L 43 (216)
||++||+++++..+||++++|++|+++ +.|+.++.
T Consensus 211 vIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 211 VVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred EEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 999999999999999999999999976 78888765
No 180
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.35 E-value=0.0034 Score=55.87 Aligned_cols=31 Identities=13% Similarity=-0.067 Sum_probs=28.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEec
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGF 39 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs 39 (216)
||+.||-|+|+.++|||+.+|++||++..-.
T Consensus 193 Ii~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 193 IIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999765444
No 181
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0027 Score=52.32 Aligned_cols=41 Identities=7% Similarity=-0.049 Sum_probs=36.0
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+|.++|. |+++||+++.+...||+|+.|++ ++++.|++++.
T Consensus 177 ~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~ 225 (254)
T COG1121 177 EIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEV 225 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhc
Confidence 3556666 99999999999999999999955 99999999987
No 182
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0014 Score=52.67 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=34.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|++.||.|.-|.+++|+.+++..|+++..|+.+++
T Consensus 201 IviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 201 IVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred EEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999888
No 183
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.0034 Score=51.37 Aligned_cols=24 Identities=4% Similarity=-0.033 Sum_probs=23.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
|++.||+++||=.++|||.+|.+|
T Consensus 184 vllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 184 VLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999994
No 184
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.26 E-value=0.0025 Score=58.56 Aligned_cols=42 Identities=14% Similarity=-0.127 Sum_probs=35.1
Q ss_pred hhhhhHH-----hhhcCCChhHHHhhhceEEEeeC-CEEE-EEeccccc
Q psy863 2 VLWCILL-----IIVPIHVTSNTRDSIRLLATYFP-GYAM-ICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~-G~li-~~Gs~~~L 43 (216)
.++++|+ ||++||++++++.+|||+++|++ |++. ..|+.+++
T Consensus 483 ~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 483 ALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 3566666 89999999999999999999986 7877 57777766
No 185
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.20 E-value=0.0032 Score=57.97 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
+|++||.++.++. |||+.+|++|+++..|+.+++ .++.+
T Consensus 503 ii~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l-~~~~~ 541 (569)
T PRK10789 503 VIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQL-AQQSG 541 (569)
T ss_pred EEEEecchhHHHc-CCEEEEEeCCEEEEecCHHHH-HHcCC
Confidence 8999999998866 999999999999999999998 65543
No 186
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.13 E-value=0.0054 Score=57.42 Aligned_cols=34 Identities=9% Similarity=-0.075 Sum_probs=32.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|+++||+++.++ .|||+++|++|+++.+|++++.
T Consensus 197 ilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 197 VIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred EEEECCCHHHHH-hCCEEEEEECCEEEeecCcccc
Confidence 999999999997 5999999999999999999987
No 187
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.11 E-value=0.0041 Score=51.15 Aligned_cols=35 Identities=9% Similarity=-0.172 Sum_probs=27.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEE--EEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAM--ICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li--~~Gs~~~L 43 (216)
||++||++++++.+|||+.+|+++... ..+++..+
T Consensus 169 iiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 169 AFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 999999999999999999999665333 34455444
No 188
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.10 E-value=0.0034 Score=57.61 Aligned_cols=42 Identities=14% Similarity=-0.126 Sum_probs=34.2
Q ss_pred hhhhhHH-----hhhcCCChhHHHhhhceEEEeeC-CEEE-EEeccccc
Q psy863 2 VLWCILL-----IIVPIHVTSNTRDSIRLLATYFP-GYAM-ICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~-G~li-~~Gs~~~L 43 (216)
.++++|+ ||++||++++++.+|||+++|++ |++. ..|+.++.
T Consensus 481 ~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 481 ALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred HHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 3556665 89999999999999999999987 5876 56776655
No 189
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.003 Score=57.18 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=35.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
+|+.||.+..+-. ||+|.+|++||+++.|+.++| .++-+
T Consensus 508 vl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L-~~~~~ 546 (559)
T COG4988 508 VLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEEL-SEKQG 546 (559)
T ss_pred EEEEEcChHHHhc-CCEEEEecCCceeccCCHHHH-hhcCc
Confidence 9999999999977 999999999999999999999 66544
No 190
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.02 E-value=0.0039 Score=60.47 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=33.2
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++. .||||++| ++|++++.|+++++ ..
T Consensus 544 VIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~-~~ 585 (943)
T PRK00349 544 LIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEI-MK 585 (943)
T ss_pred EEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHH-hc
Confidence 999999999997 59999999 99999999999887 54
No 191
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.01 E-value=0.0034 Score=51.98 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=24.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEe
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICG 38 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~G 38 (216)
||++||++++++.+||++++| +|++.+.|
T Consensus 192 IIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 192 VLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred EEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 999999999999999999999 56665544
No 192
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.95 E-value=0.0041 Score=60.17 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=33.3
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++. .|||+++| ++|++++.|+++++ ..
T Consensus 542 VIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el-~~ 583 (924)
T TIGR00630 542 VIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEI-LA 583 (924)
T ss_pred EEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHH-hc
Confidence 999999999997 79999999 99999999999887 53
No 193
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.93 E-value=0.0049 Score=57.53 Aligned_cols=42 Identities=21% Similarity=-0.031 Sum_probs=35.1
Q ss_pred hhhhhHH-----hhhcCCChhHHHhhhceEEEeeCCEEE-EEeccccc
Q psy863 2 VLWCILL-----IIVPIHVTSNTRDSIRLLATYFPGYAM-ICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~G~li-~~Gs~~~L 43 (216)
+++++|+ ||++||++++++.+||+|++|++|+++ +.|+..+.
T Consensus 194 ~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 194 WLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 3556665 999999999999999999999999998 45776553
No 194
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=95.89 E-value=0.0051 Score=59.67 Aligned_cols=36 Identities=11% Similarity=-0.004 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++ .||+++.| ++|++++.|+++++ .+
T Consensus 886 VIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el-~~ 927 (943)
T PRK00349 886 VVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEV-AK 927 (943)
T ss_pred EEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHH-Hh
Confidence 999999999996 59999999 79999999999998 54
No 195
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.85 E-value=0.0062 Score=56.28 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=34.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
+|+.||.++.+.. ||+|++|++|+++..|+.+++ .++.
T Consensus 528 vIivtHr~~~l~~-~D~ii~l~~G~i~~~G~~~~L-~~~~ 565 (592)
T PRK10790 528 LVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQL-LAAQ 565 (592)
T ss_pred EEEEecchHHHHh-CCEEEEEECCEEEEEcCHHHH-HhCC
Confidence 8999999988876 999999999999999999999 6553
No 196
>PLN03073 ABC transporter F family; Provisional
Probab=95.82 E-value=0.006 Score=57.74 Aligned_cols=42 Identities=17% Similarity=-0.065 Sum_probs=34.9
Q ss_pred hhhhhHH-----hhhcCCChhHHHhhhceEEEeeCCEEE-EEeccccc
Q psy863 2 VLWCILL-----IIVPIHVTSNTRDSIRLLATYFPGYAM-ICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~G~li-~~Gs~~~L 43 (216)
+++++|+ ||++||+++++..+||++++|++|++. +.|+.+..
T Consensus 382 ~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 382 WLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 3455666 999999999999999999999999996 67766543
No 197
>PLN03232 ABC transporter C family member; Provisional
Probab=95.75 E-value=0.0058 Score=62.33 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||+.||.++.+.. ||||++|++|+++..|++++| .++.
T Consensus 1423 vI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eL-l~~~ 1460 (1495)
T PLN03232 1423 MLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL-LSRD 1460 (1495)
T ss_pred EEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH-HhCC
Confidence 9999999999988 999999999999999999999 6553
No 198
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.0073 Score=56.46 Aligned_cols=41 Identities=12% Similarity=-0.133 Sum_probs=34.1
Q ss_pred hhhhHH-----hhhcCCChhHHHhhhceEEEeeCCEEE-EEeccccc
Q psy863 3 LWCILL-----IIVPIHVTSNTRDSIRLLATYFPGYAM-ICGFKLLG 43 (216)
Q Consensus 3 iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~G~li-~~Gs~~~L 43 (216)
++++|+ ||++||++++++.+|||+++|++|++. +.|+....
T Consensus 188 L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 188 LEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 455555 999999999999999999999999996 56766544
No 199
>PLN03130 ABC transporter C family member; Provisional
Probab=95.65 E-value=0.0066 Score=62.30 Aligned_cols=37 Identities=8% Similarity=-0.028 Sum_probs=34.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||+.+|.++.+.. ||||++|++|+++..|++++| .++
T Consensus 1426 vI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eL-l~~ 1462 (1622)
T PLN03130 1426 MLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL-LSN 1462 (1622)
T ss_pred EEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHH-HhC
Confidence 8999999999987 999999999999999999999 654
No 200
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.62 E-value=0.0074 Score=47.19 Aligned_cols=27 Identities=7% Similarity=-0.113 Sum_probs=24.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAM 35 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li 35 (216)
||++||++++++.+||++++|+++-..
T Consensus 125 iiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 125 ALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 899999999999999999999877554
No 201
>PLN03140 ABC transporter G family member; Provisional
Probab=95.58 E-value=0.007 Score=61.47 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=35.3
Q ss_pred hhhcCCCh-hHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVT-SNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L-~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||+|+|+. +|+..+||+|++|++|++++.|+++++ ..-+
T Consensus 390 viis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~-~~yF 429 (1470)
T PLN03140 390 VLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHI-LEFF 429 (1470)
T ss_pred EEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHH-HHHH
Confidence 89999996 799999999999999999999999988 6543
No 202
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.44 E-value=0.0089 Score=55.17 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=34.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
+|+.||.++.+.. ||+|.+|++|+++..|+.++| .++.
T Consensus 537 vIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL-~~~~ 574 (588)
T PRK11174 537 TLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAEL-SQAG 574 (588)
T ss_pred EEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHH-Hhcc
Confidence 8999999998876 999999999999999999999 6543
No 203
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.36 E-value=0.011 Score=54.50 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||+.||.++.++. ||||..|++|++...|+.+++ .++
T Consensus 523 vIiitHr~~~~~~-~D~ii~l~~G~i~~~g~~~~l-~~~ 559 (588)
T PRK13657 523 TFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDEL-VAR 559 (588)
T ss_pred EEEEEecHHHHHh-CCEEEEEECCEEEEeCCHHHH-HHC
Confidence 8999999998865 999999999999999999998 654
No 204
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=95.26 E-value=0.01 Score=60.09 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=35.4
Q ss_pred hhhcCCCh-hHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVT-SNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L-~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||+|+|+. +++.++||++++|++|++++.|+++++ +.-+
T Consensus 263 vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~-~~yF 302 (1394)
T TIGR00956 263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA-KQYF 302 (1394)
T ss_pred EEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH-HHHH
Confidence 89999996 799999999999999999999999988 6544
No 205
>PTZ00243 ABC transporter; Provisional
Probab=95.16 E-value=0.011 Score=60.40 Aligned_cols=37 Identities=11% Similarity=-0.070 Sum_probs=34.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||+.+|.++-+.. ||||++|++|+++..|++++| .++
T Consensus 1498 vI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eL-l~~ 1534 (1560)
T PTZ00243 1498 VITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPREL-VMN 1534 (1560)
T ss_pred EEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHH-HhC
Confidence 8999999999876 999999999999999999999 653
No 206
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.0099 Score=47.33 Aligned_cols=35 Identities=14% Similarity=-0.035 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|++.=|+..-|...+|+|+-|++|+++.+|+++++
T Consensus 189 iviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 189 IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred EEEEEecccHHHhhhhheeeecCCEEEecCCHHHh
Confidence 88888999999999999999999999999999998
No 207
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.01 E-value=0.015 Score=59.58 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=33.5
Q ss_pred hhhcCCChhHHHhhhceEEEee------CCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF------PGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~------~G~li~~Gs~~~L~k~ 46 (216)
||++||+++++ ..|||+++|. +|++++.|+++++ ..
T Consensus 865 VIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel-~~ 906 (1809)
T PRK00635 865 VVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEEL-IH 906 (1809)
T ss_pred EEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHH-Hh
Confidence 99999999999 7899999996 8999999999998 64
No 208
>PRK13409 putative ATPase RIL; Provisional
Probab=94.88 E-value=0.021 Score=52.86 Aligned_cols=31 Identities=16% Similarity=-0.037 Sum_probs=27.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFK 40 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~ 40 (216)
||++||+++++..+|||+++|+ |++...|+.
T Consensus 507 viivsHD~~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 507 ALVVDHDIYMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred EEEEeCCHHHHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999995 588777773
No 209
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=94.82 E-value=0.021 Score=58.37 Aligned_cols=36 Identities=6% Similarity=-0.109 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||+.||.++.+.. ||||++|++|+++..|++.+| .+
T Consensus 1405 vI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~L-l~ 1440 (1490)
T TIGR01271 1405 VILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKL-LN 1440 (1490)
T ss_pred EEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHH-Hc
Confidence 9999999999987 999999999999999999999 64
No 210
>PLN03140 ABC transporter G family member; Provisional
Probab=94.75 E-value=0.023 Score=57.90 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=30.3
Q ss_pred hhhcCCChh-HHHhhhceEEEeeC-CEEEEEeccc
Q psy863 9 IIVPIHVTS-NTRDSIRLLATYFP-GYAMICGFKL 41 (216)
Q Consensus 9 IilSTH~L~-EaE~lcDrI~Il~~-G~li~~Gs~~ 41 (216)
||+|||+.+ ++.++|||+++|++ |++++.|++.
T Consensus 1072 VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1072 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 999999998 68889999999996 8999999974
No 211
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=94.66 E-value=0.019 Score=58.70 Aligned_cols=37 Identities=8% Similarity=-0.063 Sum_probs=34.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++. ||||++|++|+++..|+.+++ ...
T Consensus 601 vilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l-~~~ 637 (1490)
T TIGR01271 601 RILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSEL-QAK 637 (1490)
T ss_pred EEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHH-Hhc
Confidence 9999999999986 999999999999999999998 653
No 212
>KOG0054|consensus
Probab=94.39 E-value=0.018 Score=57.70 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=34.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|+.||.++-.+. ||.|++|++|++...|+.+++ .+.
T Consensus 696 ~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el-~~~ 732 (1381)
T KOG0054|consen 696 VILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEEL-LKS 732 (1381)
T ss_pred EEEEeCchhhhhh-CCEEEEecCCeEecccCHHHH-Hhc
Confidence 9999999998877 999999999999999999999 753
No 213
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=94.38 E-value=0.031 Score=56.74 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=30.7
Q ss_pred hhhcCCChhH-HHhhhceEEEeeCC-EEEEEeccccc
Q psy863 9 IIVPIHVTSN-TRDSIRLLATYFPG-YAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~E-aE~lcDrI~Il~~G-~li~~Gs~~~L 43 (216)
||+|||+++. +.+.|||+++|++| ++++.|++.+.
T Consensus 955 vI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~ 991 (1394)
T TIGR00956 955 ILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGEN 991 (1394)
T ss_pred EEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccc
Confidence 9999999997 45779999999997 99999998553
No 214
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.36 E-value=0.036 Score=51.83 Aligned_cols=41 Identities=12% Similarity=-0.051 Sum_probs=32.7
Q ss_pred hhhhHH-----hhhcCCChhHHHhhhceEEEee-CCEEEE-Eeccccc
Q psy863 3 LWCILL-----IIVPIHVTSNTRDSIRLLATYF-PGYAMI-CGFKLLG 43 (216)
Q Consensus 3 iw~lI~-----IilSTH~L~EaE~lcDrI~Il~-~G~li~-~Gs~~~L 43 (216)
++++|+ ||++||++++++.+|||+.+|+ +|++.. .|+-++.
T Consensus 479 l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 479 LEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 445555 9999999999999999999998 899865 4555444
No 215
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=94.22 E-value=0.022 Score=58.37 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=34.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|++||.++.++. ||+|++|++|+++..|+.+++ .++
T Consensus 815 vIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l-~~~ 851 (1522)
T TIGR00957 815 RILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQEL-LQR 851 (1522)
T ss_pred EEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHH-Hhc
Confidence 8999999999987 999999999999999999998 654
No 216
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.20 E-value=0.033 Score=43.64 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+++.||++.-+.-++||..+|++|+++..|-.+.+
T Consensus 205 ~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred EEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 88999999999999999999999999999988777
No 217
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.09 E-value=0.047 Score=44.13 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=30.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLL 42 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~ 42 (216)
.++.||+|++|=.+.+|.++|++|+|+.+-+-++
T Consensus 202 tlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~ 235 (263)
T COG1101 202 TLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235 (263)
T ss_pred eEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc
Confidence 6789999999999999999999999998766544
No 218
>KOG0055|consensus
Probab=94.03 E-value=0.029 Score=55.24 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=35.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
-|+.+|.|+.+.. ||+|++|++|+++..|+.++| -+.-|
T Consensus 541 TivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~EL-i~~~G 579 (1228)
T KOG0055|consen 541 TIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDEL-IALGG 579 (1228)
T ss_pred EEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHH-Hhccc
Confidence 6788999999998 999999999999999999999 66544
No 219
>PTZ00243 ABC transporter; Provisional
Probab=93.59 E-value=0.04 Score=56.54 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=33.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
+|++||+++.++ .||+|++|++|++++.|+.+++ .+
T Consensus 835 vIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l-~~ 870 (1560)
T PTZ00243 835 RVLATHQVHVVP-RADYVVALGDGRVEFSGSSADF-MR 870 (1560)
T ss_pred EEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHH-Hh
Confidence 899999999996 4999999999999999999998 54
No 220
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.36 E-value=0.038 Score=43.52 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
.++.||.|.-|...+.+++++++|++-.+|+|+++
T Consensus 205 Mv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 205 MVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred EEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence 78899999999999999999999999999999998
No 221
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.25 E-value=0.15 Score=41.34 Aligned_cols=31 Identities=3% Similarity=-0.177 Sum_probs=28.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFK 40 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~ 40 (216)
+|+|||+ .|+..+||++..+++|++...++-
T Consensus 146 vlisTH~-~el~~~~~~~~~i~~g~~~~~~~~ 176 (222)
T cd03285 146 CLFATHF-HELTALADEVPNVKNLHVTALTDD 176 (222)
T ss_pred EEEEech-HHHHHHhhcCCCeEEEEEEEEEeC
Confidence 8999995 899999999999999999988764
No 222
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=93.09 E-value=0.065 Score=55.24 Aligned_cols=34 Identities=9% Similarity=-0.076 Sum_probs=30.7
Q ss_pred hhhcCCChhHHHhhhceEEEee------CCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF------PGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~------~G~li~~Gs~~~L 43 (216)
||++||+++ +-+.|||+++|. +|++++.|+++++
T Consensus 531 VIvVeHd~~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 531 VLLVEHDEQ-MISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred EEEEeCcHH-HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 999999999 558899999996 8899999998776
No 223
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.52 E-value=0.05 Score=48.56 Aligned_cols=33 Identities=6% Similarity=-0.089 Sum_probs=30.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|+++||+|+| .+||++.+|.+|+++.++++.+-
T Consensus 309 Vlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 309 VLVDGDDMNE--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred EEEECCCCCc--hhhhhEEEecCEEEEEeccHHHC
Confidence 8999999995 89999999999999999999774
No 224
>PLN03130 ABC transporter C family member; Provisional
Probab=92.30 E-value=0.075 Score=54.81 Aligned_cols=37 Identities=5% Similarity=-0.152 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|+.||.++.+.. ||+|++|++|++...|+.+++ .++
T Consensus 793 vIlVTH~l~~l~~-aD~Ii~L~~G~i~e~Gt~~eL-~~~ 829 (1622)
T PLN03130 793 RVLVTNQLHFLSQ-VDRIILVHEGMIKEEGTYEEL-SNN 829 (1622)
T ss_pred EEEEECCHhHHHh-CCEEEEEeCCEEEEeCCHHHH-Hhc
Confidence 8999999988766 999999999999999999998 654
No 225
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=92.18 E-value=0.031 Score=43.80 Aligned_cols=35 Identities=14% Similarity=0.011 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||+|+|+|...-+-+|++-++++|+++++|+.+++
T Consensus 185 vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 185 IVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred EEEeccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence 99999999999999999999999999999999887
No 226
>PLN03232 ABC transporter C family member; Provisional
Probab=92.17 E-value=0.078 Score=54.35 Aligned_cols=37 Identities=5% Similarity=-0.213 Sum_probs=33.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|+.||.++.+.. ||+|++|++|+++..|+.+++ .++
T Consensus 793 ~IlvTH~~~~l~~-aD~Ii~L~~G~i~~~Gt~~eL-~~~ 829 (1495)
T PLN03232 793 RVLVTNQLHFLPL-MDRIILVSEGMIKEEGTFAEL-SKS 829 (1495)
T ss_pred EEEEECChhhHHh-CCEEEEEeCCEEEEecCHHHH-Hhc
Confidence 8999999998765 999999999999999999998 654
No 227
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=91.74 E-value=0.065 Score=42.46 Aligned_cols=32 Identities=6% Similarity=-0.186 Sum_probs=27.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+|++||+ .+...+||++..|++|++...+ +++
T Consensus 144 vi~~tH~-~~l~~~~d~~~~l~~g~l~~~~--~~~ 175 (200)
T cd03280 144 VIATTHY-GELKAYAYKREGVENASMEFDP--ETL 175 (200)
T ss_pred EEEECCH-HHHHHHHhcCCCeEEEEEEEec--Ccc
Confidence 9999998 6788999999999999998873 445
No 228
>PRK13409 putative ATPase RIL; Provisional
Probab=91.72 E-value=0.12 Score=48.08 Aligned_cols=24 Identities=8% Similarity=-0.056 Sum_probs=22.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
||++||++++++.+|||+.+|++|
T Consensus 264 vIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 264 VLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCC
Confidence 899999999999999999999874
No 229
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.13 E-value=0.13 Score=40.66 Aligned_cols=35 Identities=9% Similarity=-0.097 Sum_probs=32.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
-|+.|.++.-+.-++|.|++|+.|+++..|++.++
T Consensus 203 yiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v 237 (267)
T COG4167 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237 (267)
T ss_pred EEEEechhhHhhhhcccEEEEecCceeecCChhhh
Confidence 57788889999999999999999999999999998
No 230
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=90.39 E-value=0.14 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=21.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
+|++||.++.++ .||+|++|++|
T Consensus 633 vIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 633 TIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred EEEEeCCHHHHH-hCCEEEEEeCC
Confidence 899999999995 79999999997
No 231
>KOG0058|consensus
Probab=90.09 E-value=0.12 Score=48.31 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||+..|-|+-++. ||+|++|++|+++..|+-++| .++-
T Consensus 656 VlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eL-l~~~ 693 (716)
T KOG0058|consen 656 VLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDEL-LSKP 693 (716)
T ss_pred EEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHH-hhCc
Confidence 8999999999988 999999999999999999999 6554
No 232
>KOG0054|consensus
Probab=88.77 E-value=0.25 Score=49.86 Aligned_cols=39 Identities=8% Similarity=-0.033 Sum_probs=35.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
||-.-|-++-+.. ||||.+|++|+++..|+|.+| .++.+
T Consensus 1327 VltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~L-l~~~~ 1365 (1381)
T KOG0054|consen 1327 VLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAEL-LSDKD 1365 (1381)
T ss_pred EEEEeeccchhhh-cCeEEEeeCCeEeecCChHHH-HhCCc
Confidence 8889999999998 999999999999999999999 65433
No 233
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=88.61 E-value=0.26 Score=39.05 Aligned_cols=34 Identities=3% Similarity=-0.371 Sum_probs=29.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+|++||+++.++ .|+++..++.|++...+...++
T Consensus 144 vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 144 TLFATHFHELAD-LPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred EEEECChHHHHH-HhhcCCCeEEEEEEEEecCCee
Confidence 899999987766 5889999999999999987776
No 234
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.04 E-value=0.31 Score=39.71 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=32.2
Q ss_pred hhhcCCChhHHHhhh-ceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSI-RLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lc-DrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+++.|||-.=++.+- |++-+|-+||+++.|.+ +| ..+
T Consensus 197 ~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el-~~~ 234 (251)
T COG0396 197 VLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL-AEE 234 (251)
T ss_pred EEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH-HHH
Confidence 899999988887764 99999999999999999 76 443
No 235
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.95 E-value=0.37 Score=38.55 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=30.8
Q ss_pred hhhcCCChhHHHhhhceEEEee--CCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF--PGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~--~G~li~~Gs~~~L 43 (216)
+++.||+++||--+++|+++|. .||++.--+++.-
T Consensus 186 ~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~ 222 (259)
T COG4525 186 VLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFA 222 (259)
T ss_pred EEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHH
Confidence 9999999999999999999997 4788888777743
No 236
>KOG0057|consensus
Probab=86.60 E-value=0.44 Score=43.41 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=33.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
+|+.-|.++-++. ||+|+++++|++...|+.++| .+
T Consensus 539 vI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~el-l~ 574 (591)
T KOG0057|consen 539 VIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSEL-LA 574 (591)
T ss_pred EEEEEecchhHhc-CCEEEEEECCeeEEeccHHHH-hh
Confidence 8888999999988 999999999999999999999 65
No 237
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=86.45 E-value=0.3 Score=39.29 Aligned_cols=34 Identities=6% Similarity=-0.246 Sum_probs=30.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+|++||+. |...+||++--+.+|++...++.+++
T Consensus 146 vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 146 TLFATHYH-ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred EEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 89999996 66778999988899999999988888
No 238
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=82.89 E-value=0.81 Score=42.13 Aligned_cols=26 Identities=8% Similarity=-0.100 Sum_probs=23.5
Q ss_pred hhhceEEEeeCCEEEEEeccccccccc
Q psy863 21 DSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 21 ~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+-||+|.+|++|+++..|+.++| .++
T Consensus 528 ~~aD~IiVl~~G~i~e~G~h~eL-l~~ 553 (567)
T COG1132 528 KNADRIIVLDNGRIVERGTHEEL-LAK 553 (567)
T ss_pred HhCCEEEEEECCEEEEecCHHHH-HHc
Confidence 34999999999999999999999 765
No 239
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=82.53 E-value=0.71 Score=37.39 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=35.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
|+++||++.-+.+-||+|-+|-=|+-+..+..+++ -..
T Consensus 212 ILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l-~~~ 249 (330)
T COG4170 212 ILLISHDLQMISQWADKINVLYCGQTVESAPSEEL-VTM 249 (330)
T ss_pred EEEEcccHHHHHHHhhheEEEEecccccccchhHH-hcC
Confidence 99999999999999999999999999999998888 443
No 240
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=80.66 E-value=1.2 Score=36.04 Aligned_cols=25 Identities=16% Similarity=-0.112 Sum_probs=22.2
Q ss_pred hceEEEeeCCEEEEEecccccccccc
Q psy863 23 IRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 23 cDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
|||+++|++|+++..|+++++ .+.+
T Consensus 199 ~d~i~~l~~G~i~~~~~~~~~-~~~~ 223 (236)
T TIGR03864 199 DDRLVVLHRGRVLADGAAAEL-RGAL 223 (236)
T ss_pred CCEEEEEeCCeEEEeCCHHHH-HHHc
Confidence 999999999999999999888 6543
No 241
>KOG2355|consensus
Probab=79.40 E-value=1 Score=36.43 Aligned_cols=35 Identities=11% Similarity=-0.145 Sum_probs=32.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|+++||+.|-.|.-..+++-|+.|+++-.-..+.+
T Consensus 201 IVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 201 IVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred EEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 99999999999999999999999999986666665
No 242
>KOG0055|consensus
Probab=77.69 E-value=1 Score=44.95 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=27.0
Q ss_pred hhhceEEEeeCCEEEEEeccccccccccCceEE
Q psy863 21 DSIRLLATYFPGYAMICGFKLLGNFEANGAGYQ 53 (216)
Q Consensus 21 ~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~ 53 (216)
+-||.|+++++|+++.+||-++| -++.|..|.
T Consensus 1189 qnaD~I~Vi~~G~VvE~GtH~~L-~~~~G~Y~~ 1220 (1228)
T KOG0055|consen 1189 QNADVIAVLKNGKVVEQGTHDEL-LAKRGIYFR 1220 (1228)
T ss_pred hcCCEEEEEECCEEEecccHHHH-HhCCCchHH
Confidence 45899999999999999999999 776665443
No 243
>PRK02553 psbK photosystem II reaction center protein K; Provisional
Probab=76.01 E-value=4.1 Score=23.93 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=18.4
Q ss_pred HHHH-HHHHHHHHHH-HHHHhhcc
Q psy863 173 QGVL-FLVFLLFATA-MLLFTYSY 194 (216)
Q Consensus 173 ~~~~-~~p~~~~~~a-~~~~~~~~ 194 (216)
.++. ++|.+|.++| +|...++|
T Consensus 21 VDvmPiIP~~f~lLafVWQAaV~f 44 (45)
T PRK02553 21 VDVLPLIPLFFLLLAFVWQAAVGF 44 (45)
T ss_pred HHHhchHHHHHHHHHHHHHHhhcc
Confidence 4566 8999999999 88888877
No 244
>PF02533 PsbK: Photosystem II 4 kDa reaction centre component; InterPro: IPR003687 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbK found in PSII, where it is tightly associated with the antenna protein CP43 (PsbC). PsbK is required for accumulation of the PSII complex, and may participate in the assembly and stability of the PSII complex. In particular, PsbK may be involved in the binding of plastoquinone and in maintaining the dimeric organisation of PSII [, ].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 4FBY_K 3PRQ_K 1IZL_W 3BZ1_K 2AXT_K 1S5L_K 3PRR_K 3BZ2_K 3KZI_K 3A0B_k ....
Probab=74.43 E-value=2.8 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.9
Q ss_pred HHHH-HHHHHHHHHH-HHHHhhcc
Q psy863 173 QGVL-FLVFLLFATA-MLLFTYSY 194 (216)
Q Consensus 173 ~~~~-~~p~~~~~~a-~~~~~~~~ 194 (216)
.++. ++|.+|.++| +|+..++|
T Consensus 18 VDvmPiIPvlf~LLAfVWQAaV~F 41 (42)
T PF02533_consen 18 VDVMPIIPVLFFLLAFVWQAAVSF 41 (42)
T ss_dssp HCCCCCHHHHHHHHHHHHHHHTTT
T ss_pred HHhcccHHHHHHHHHHHHHHhhcc
Confidence 3445 8899999999 89988887
No 245
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.47 E-value=2 Score=39.69 Aligned_cols=24 Identities=4% Similarity=-0.103 Sum_probs=21.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~ 33 (216)
||++||.+..+. .||++.+|++|.
T Consensus 496 vi~iTH~~~~~~-~ad~~~~l~k~~ 519 (563)
T TIGR00634 496 VLCVTHLPQVAA-HADAHFKVEKEG 519 (563)
T ss_pred EEEEEChHHHHH-hcCeEEEEEEcc
Confidence 999999999886 799999999875
No 246
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=72.55 E-value=2.6 Score=38.90 Aligned_cols=32 Identities=16% Similarity=0.026 Sum_probs=26.8
Q ss_pred hHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 17 SNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 17 ~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
.+.-+.||+|++|++|+++..|+.+++ .++.+
T Consensus 539 ~~~~~~~D~Ii~l~~g~i~e~g~~~~l-~~~~~ 570 (582)
T PRK11176 539 LSTIEKADEILVVEDGEIVERGTHAEL-LAQNG 570 (582)
T ss_pred hHHHHhCCEEEEEECCEEEEeCCHHHH-HhCCC
Confidence 455567999999999999999999999 66543
No 247
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=69.62 E-value=1.2 Score=40.41 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
+++.||--+-... ||+|.+|++|++...|+.+++ .++.
T Consensus 525 vvviaHRPs~L~~-~Dkilvl~~G~~~~FG~r~eV-La~~ 562 (580)
T COG4618 525 VVVIAHRPSALAS-VDKILVLQDGRIAAFGPREEV-LAKV 562 (580)
T ss_pred EEEEecCHHHHhh-cceeeeecCChHHhcCCHHHH-HHHh
Confidence 8899999987755 999999999999999999998 6554
No 248
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=68.47 E-value=1.9 Score=38.81 Aligned_cols=41 Identities=15% Similarity=-0.004 Sum_probs=34.2
Q ss_pred hhhcCCChhH--------HHhhhceEEEeeCCEEEEEeccccccccccCc
Q psy863 9 IIVPIHVTSN--------TRDSIRLLATYFPGYAMICGFKLLGNFEANGA 50 (216)
Q Consensus 9 IilSTH~L~E--------aE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~ 50 (216)
+++++|...+ +|.+||.+++|++++-.....+..+ |.+++.
T Consensus 215 vllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~-K~R~g~ 263 (454)
T TIGR00416 215 IFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRSV-KNRFGA 263 (454)
T ss_pred EEEEeccccCCccCCcccEeeeceEEEEEeccCCCcEEEEEEe-cCCCCC
Confidence 8999998877 7999999999998886666777777 888764
No 249
>CHL00047 psbK photosystem II protein K
Probab=62.97 E-value=9.3 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHH-HHHHHHHHHH-HHHHhhcc
Q psy863 173 QGVL-FLVFLLFATA-MLLFTYSY 194 (216)
Q Consensus 173 ~~~~-~~p~~~~~~a-~~~~~~~~ 194 (216)
.++. ++|.+|.++| +|+..++|
T Consensus 34 VDvmPiIP~~f~LLAfVWQAaV~f 57 (58)
T CHL00047 34 VDVMPVIPVLFFLLAFVWQAAVSF 57 (58)
T ss_pred HHhcccHHHHHHHHHHHHHHhccc
Confidence 4566 8999999999 89988887
No 250
>KOG0056|consensus
Probab=62.01 E-value=3.1 Score=37.95 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
-|+..|-|+-+-. ||-|.++++|+|+.-|+-++| -++-|
T Consensus 726 tIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeL-l~rdg 764 (790)
T KOG0056|consen 726 TIVVAHRLSTIVN-ADLILVISNGRIVERGRHEEL-LKRDG 764 (790)
T ss_pred eEEEeeeehheec-ccEEEEEeCCeEeecCcHHHH-HhccC
Confidence 4667899998866 999999999999999999999 65534
No 251
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=61.85 E-value=5.5 Score=41.18 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=24.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeC----CEEEE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFP----GYAMI 36 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~----G~li~ 36 (216)
+|+.||.++.++. ||+|++|++ |+++.
T Consensus 1412 vIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~ 1442 (1466)
T PTZ00265 1412 IITIAHRIASIKR-SDKIVVFNNPDRTGSFVQ 1442 (1466)
T ss_pred EEEEechHHHHHh-CCEEEEEeCCCCCCCEEE
Confidence 8999999999876 999999999 88654
No 252
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=60.84 E-value=4.2 Score=39.43 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=29.2
Q ss_pred hhhcCCChhHHH---------hhhceEEEeeCCEEEEEecccc
Q psy863 9 IIVPIHVTSNTR---------DSIRLLATYFPGYAMICGFKLL 42 (216)
Q Consensus 9 IilSTH~L~EaE---------~lcDrI~Il~~G~li~~Gs~~~ 42 (216)
++++||.++++. +.|++.++|.+|++...|+.+.
T Consensus 688 vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~~~ 730 (818)
T PRK13830 688 VVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTREF 730 (818)
T ss_pred EEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchHHH
Confidence 899999999986 5799999999999987775543
No 253
>PLN00075 Photosystem II reaction center protein K; Provisional
Probab=60.84 E-value=11 Score=22.90 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=17.7
Q ss_pred HHHH-HHHHHHHHHH-HHHHhhcc
Q psy863 173 QGVL-FLVFLLFATA-MLLFTYSY 194 (216)
Q Consensus 173 ~~~~-~~p~~~~~~a-~~~~~~~~ 194 (216)
.++. ++|.+|.++| .|...++|
T Consensus 28 VDvmPiIP~~f~lLafVwQAaV~f 51 (52)
T PLN00075 28 IDVMPVIPLFFFLLAFVWQAAVSF 51 (52)
T ss_pred HHhcccHHHHHHHHHHHHHHhccc
Confidence 4566 8899888888 88888876
No 254
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=59.20 E-value=4.2 Score=31.66 Aligned_cols=34 Identities=3% Similarity=-0.339 Sum_probs=23.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+|++||++ |+.++||+-.-+.++++......+++
T Consensus 115 iii~TH~~-~l~~~~~~~~~v~~~~~~~~~~~~~~ 148 (185)
T smart00534 115 TLFATHYH-ELTKLADEHPGVRNLHMSADEETENL 148 (185)
T ss_pred EEEEecHH-HHHHHhhcCccceEEEEEEEEecCce
Confidence 89999999 68888987555556665554433333
No 255
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=56.36 E-value=3.8 Score=20.70 Aligned_cols=13 Identities=8% Similarity=-0.317 Sum_probs=10.7
Q ss_pred EEEEEecccccccc
Q psy863 33 YAMICGFKLLGNFE 46 (216)
Q Consensus 33 ~li~~Gs~~~L~k~ 46 (216)
|++++|+|+++ ++
T Consensus 1 ~via~G~p~~i-~~ 13 (23)
T PF12399_consen 1 RVIAEGTPEEI-RA 13 (23)
T ss_pred CEeeEcCHHHH-hc
Confidence 57899999998 54
No 256
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=55.67 E-value=4.6 Score=38.87 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=32.1
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||+.-|.|+-+. .||+|+=| ..|++++.|||+++ .+
T Consensus 878 ViVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeev-a~ 919 (935)
T COG0178 878 VIVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEV-AK 919 (935)
T ss_pred EEEEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHH-Hh
Confidence 999999999884 59999877 78999999999999 65
No 257
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=51.08 E-value=8 Score=35.06 Aligned_cols=22 Identities=0% Similarity=-0.142 Sum_probs=19.3
Q ss_pred hhhcCCChhH--------H-HhhhceEEEee
Q psy863 9 IIVPIHVTSN--------T-RDSIRLLATYF 30 (216)
Q Consensus 9 IilSTH~L~E--------a-E~lcDrI~Il~ 30 (216)
+|++||.+++ + +.+||.|++|+
T Consensus 160 vLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 160 TVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred EEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 8999999875 2 88999999997
No 258
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=49.81 E-value=6.7 Score=31.33 Aligned_cols=22 Identities=5% Similarity=-0.209 Sum_probs=18.0
Q ss_pred hhhcCCC---------hhHHHhhhceEEEee
Q psy863 9 IIVPIHV---------TSNTRDSIRLLATYF 30 (216)
Q Consensus 9 IilSTH~---------L~EaE~lcDrI~Il~ 30 (216)
++++||. +..++.+||.|++|+
T Consensus 147 vll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 147 TILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred EEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 8888885 355799999999994
No 259
>PRK10869 recombination and repair protein; Provisional
Probab=48.27 E-value=13 Score=34.41 Aligned_cols=24 Identities=4% Similarity=-0.125 Sum_probs=20.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~ 33 (216)
||++||.+..+ ..||+...+.+|.
T Consensus 486 vi~iTH~~~~~-~~ad~~~~v~k~~ 509 (553)
T PRK10869 486 VMCVTHLPQVA-GCGHQHFFVSKET 509 (553)
T ss_pred EEEEecCHHHH-HhCCEEEEEeccc
Confidence 99999999877 6899999998754
No 260
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=46.81 E-value=14 Score=33.94 Aligned_cols=30 Identities=10% Similarity=-0.077 Sum_probs=25.7
Q ss_pred hHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 17 SNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 17 ~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
.+.-..||+|..|++|++...|+.+++ .+.
T Consensus 528 ~~~~~~~D~ii~l~~g~i~~~g~~~~l-~~~ 557 (571)
T TIGR02203 528 LSTIEKADRIVVMDDGRIVERGTHNEL-LAR 557 (571)
T ss_pred hHHHHhCCEEEEEeCCEEEeeCCHHHH-HHc
Confidence 456678999999999999999999998 543
No 261
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=46.33 E-value=16 Score=33.68 Aligned_cols=30 Identities=13% Similarity=-0.041 Sum_probs=27.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEe
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICG 38 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~G 38 (216)
+|+.||+=+-...+|++|+-+++|++...+
T Consensus 203 viiVSHDR~FLd~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 203 VIVVSHDRYFLDNVATHILELDRGKLTPYK 232 (530)
T ss_pred EEEEeCCHHHHHHHhhheEEecCCceeEec
Confidence 999999999999999999999999876643
No 262
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=44.98 E-value=17 Score=28.65 Aligned_cols=22 Identities=14% Similarity=-0.001 Sum_probs=17.4
Q ss_pred hhhcCCChhHHHhh--hceEEEee
Q psy863 9 IIVPIHVTSNTRDS--IRLLATYF 30 (216)
Q Consensus 9 IilSTH~L~EaE~l--cDrI~Il~ 30 (216)
+|++||++++++.+ .+++..++
T Consensus 141 iiivTH~~~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 141 GIISTHDLELADLLDLDSAVRNYH 164 (199)
T ss_pred EEEEcCcHHHHHhhhcCCCeEEEE
Confidence 89999999999887 55665544
No 263
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=44.21 E-value=17 Score=35.17 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=32.0
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~~ 47 (216)
+|+.-|+-+-+. .||+|+=| +.|+++++|||+++ .+.
T Consensus 536 viVVEHDedti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i-~~~ 578 (935)
T COG0178 536 VIVVEHDEDTIR-AADHIIDIGPGAGEHGGEIVAEGTPEEL-LAN 578 (935)
T ss_pred EEEEecCHHHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHH-HhC
Confidence 899999988775 49999866 89999999999999 654
No 264
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=43.77 E-value=14 Score=28.61 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=16.9
Q ss_pred hhhcCCChhH--HHhhhceEEEeeC
Q psy863 9 IIVPIHVTSN--TRDSIRLLATYFP 31 (216)
Q Consensus 9 IilSTH~L~E--aE~lcDrI~Il~~ 31 (216)
|++.+|.+.| .+.+||+++++..
T Consensus 108 vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 108 VLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred EEEEchHhhhCCcHHhCCEEEEEEC
Confidence 7788888866 6778887766544
No 265
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=42.54 E-value=16 Score=29.08 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=15.0
Q ss_pred hhhcCCChhHHHhhhce
Q psy863 9 IIVPIHVTSNTRDSIRL 25 (216)
Q Consensus 9 IilSTH~L~EaE~lcDr 25 (216)
+|++||+.+.++.++++
T Consensus 144 ~i~~TH~~~l~~~~~~~ 160 (204)
T cd03282 144 VFFATHFRDIAAILGNK 160 (204)
T ss_pred EEEECChHHHHHHhhcC
Confidence 99999999999988753
No 266
>PRK13764 ATPase; Provisional
Probab=40.79 E-value=26 Score=32.85 Aligned_cols=28 Identities=4% Similarity=-0.256 Sum_probs=24.4
Q ss_pred ChhHHHhhhceEEEeeCCEE--EEEecccc
Q psy863 15 VTSNTRDSIRLLATYFPGYA--MICGFKLL 42 (216)
Q Consensus 15 ~L~EaE~lcDrI~Il~~G~l--i~~Gs~~~ 42 (216)
.+.++..+||++++|++|++ +++++...
T Consensus 373 ~lg~i~~iID~IV~I~~G~I~~v~~~~~~~ 402 (602)
T PRK13764 373 ELGMIPQIVDTVIFIEDGEVSKVYDLEFTV 402 (602)
T ss_pred hhchHHHhhcEEEEEeCCEEEEEEeeeeEE
Confidence 88999999999999999999 77777444
No 267
>KOG0061|consensus
Probab=39.24 E-value=11 Score=35.27 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=33.8
Q ss_pred hhhcCCCh-hHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVT-SNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L-~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||.|=|.- .++=.+-|++++|.+|++++.|+++++ ..-+
T Consensus 223 Vi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~-~~ff 262 (613)
T KOG0061|consen 223 VICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL-LEFF 262 (613)
T ss_pred EEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH-HHHH
Confidence 78888887 588899999999999999999999887 5433
No 268
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=37.45 E-value=12 Score=33.63 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=30.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
|++++|+| .+.+||++..+.+|+++.++...+.
T Consensus 314 Vl~~~~d~--~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 314 VLVEGDDM--NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred EEccCcCC--CcchhhhhccccceEEEEecchhhC
Confidence 78899998 5789999999999999999999886
No 269
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=35.00 E-value=16 Score=29.15 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=18.1
Q ss_pred hhhcCCChh--------HHHhhhceEEEee
Q psy863 9 IIVPIHVTS--------NTRDSIRLLATYF 30 (216)
Q Consensus 9 IilSTH~L~--------EaE~lcDrI~Il~ 30 (216)
+++++|... +++.+||.|+.|+
T Consensus 159 vil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 159 ILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred EEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 889999754 4788999999887
No 270
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=29.65 E-value=61 Score=18.40 Aligned_cols=13 Identities=23% Similarity=0.651 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhcc
Q psy863 182 LFATAMLLFTYSY 194 (216)
Q Consensus 182 ~~~~a~~~~~~~~ 194 (216)
.+.+|++|++|-|
T Consensus 26 ifvl~vLFssYff 38 (39)
T PRK00753 26 VFVLGILFSSYFF 38 (39)
T ss_pred HHHHHHHHHhhcc
Confidence 3445888998876
No 271
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=27.61 E-value=7.2 Score=33.09 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=28.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
++.|+|..+ +...++|+..|..|++.+.|.+.+.
T Consensus 246 ~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 246 SITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred EEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHH
Confidence 578888888 5566999999999999998888776
No 272
>KOG0927|consensus
Probab=26.89 E-value=28 Score=32.18 Aligned_cols=35 Identities=6% Similarity=-0.170 Sum_probs=29.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCE-EEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGY-AMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~-li~~Gs~~~L 43 (216)
+++++|+-|-...+|++|+=|.+++ +-+.|.-+..
T Consensus 272 lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 272 LVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred EEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 6899999999999999999999999 4556665554
No 273
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=26.00 E-value=1.1e+02 Score=17.23 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=8.8
Q ss_pred HHHHHHHHhhcc
Q psy863 183 FATAMLLFTYSY 194 (216)
Q Consensus 183 ~~~a~~~~~~~~ 194 (216)
.++|++|++|.|
T Consensus 25 fvl~vLFssyff 36 (37)
T PF02419_consen 25 FVLAVLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhc
Confidence 345888988876
No 274
>PF07256 DUF1435: Protein of unknown function (DUF1435); InterPro: IPR009885 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=25.93 E-value=1.1e+02 Score=20.42 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHH-HHHHHHHHHHhhcc
Q psy863 167 LLHQKVQGVLFLVF-LLFATAMLLFTYSY 194 (216)
Q Consensus 167 ~~~~~l~~~~~~p~-~~~~~a~~~~~~~~ 194 (216)
+++++++-+.++|. +...+++......+
T Consensus 47 Lfh~rlRH~lLLPSc~AL~~gl~ai~~~~ 75 (78)
T PF07256_consen 47 LFHRRLRHFLLLPSCVALAGGLMAISMNL 75 (78)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 67778888888888 55555566666666
No 275
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=25.88 E-value=82 Score=22.55 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy863 175 VLFLVFLLFATAMLLFTYS 193 (216)
Q Consensus 175 ~~~~p~~~~~~a~~~~~~~ 193 (216)
..++|++.++.+|+|..++
T Consensus 5 ~~ll~lv~i~~i~yF~~iR 23 (109)
T PRK05886 5 VLFLPFLLIMGGFMYFASR 23 (109)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 3478888888888887763
Done!