Query psy863
Match_columns 216
No_of_seqs 290 out of 1283
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:41:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g1u_C Hemin import ATP-bindin 98.3 3.9E-07 1.3E-11 74.6 3.4 35 9-43 201-235 (266)
2 3fvq_A Fe(3+) IONS import ATP- 98.3 4.2E-07 1.4E-11 77.5 3.5 38 9-47 192-229 (359)
3 3tui_C Methionine import ATP-b 98.2 3.9E-07 1.3E-11 77.9 2.6 37 9-46 217-253 (366)
4 3rlf_A Maltose/maltodextrin im 98.2 5.5E-07 1.9E-11 77.3 3.4 37 9-46 187-223 (381)
5 1b0u_A Histidine permease; ABC 98.2 9.1E-07 3.1E-11 72.3 3.4 44 2-46 191-242 (262)
6 3gfo_A Cobalt import ATP-bindi 98.1 6.3E-07 2.2E-11 73.8 1.9 37 9-46 197-233 (275)
7 2olj_A Amino acid ABC transpor 98.1 1.2E-06 4E-11 71.7 3.4 44 2-46 197-248 (263)
8 1oxx_K GLCV, glucose, ABC tran 98.1 1.1E-06 3.9E-11 74.8 3.0 37 9-46 194-230 (353)
9 1z47_A CYSA, putative ABC-tran 98.1 1.3E-06 4.5E-11 74.4 3.4 37 9-46 199-235 (355)
10 2yyz_A Sugar ABC transporter, 98.1 1.1E-06 3.9E-11 74.9 3.0 37 9-46 187-223 (359)
11 2onk_A Molybdate/tungstate ABC 98.1 1.2E-06 4.3E-11 70.6 3.0 37 9-46 180-216 (240)
12 1vpl_A ABC transporter, ATP-bi 98.1 1.1E-06 3.7E-11 71.6 2.7 46 2-48 184-237 (256)
13 2it1_A 362AA long hypothetical 98.1 1.4E-06 4.6E-11 74.5 3.0 37 9-46 187-223 (362)
14 1g29_1 MALK, maltose transport 98.1 1.4E-06 4.7E-11 74.8 3.0 37 9-46 193-229 (372)
15 1v43_A Sugar-binding transport 98.1 1.6E-06 5.5E-11 74.3 3.0 37 9-46 195-231 (372)
16 3d31_A Sulfate/molybdate ABC t 98.1 1.2E-06 4.2E-11 74.4 2.3 37 9-46 181-217 (348)
17 1g6h_A High-affinity branched- 98.0 2.1E-06 7.1E-11 69.9 2.5 35 9-43 206-240 (257)
18 2qi9_C Vitamin B12 import ATP- 98.0 3.7E-06 1.3E-10 68.2 3.3 35 9-43 186-220 (249)
19 2ihy_A ABC transporter, ATP-bi 97.9 2.9E-06 9.9E-11 69.9 1.8 35 9-43 214-250 (279)
20 2yz2_A Putative ABC transporte 97.9 3.6E-06 1.2E-10 68.9 2.3 38 9-47 191-228 (266)
21 2pjz_A Hypothetical protein ST 97.8 5.9E-06 2E-10 67.5 2.4 44 2-46 166-215 (263)
22 3nh6_A ATP-binding cassette SU 97.8 9.7E-06 3.3E-10 67.7 3.3 38 9-48 242-279 (306)
23 2nq2_C Hypothetical ABC transp 97.7 1.2E-05 4.1E-10 65.2 2.7 34 9-43 182-215 (253)
24 2d2e_A SUFC protein; ABC-ATPas 97.7 1.4E-05 4.7E-10 64.8 2.9 42 2-43 181-231 (250)
25 2ixe_A Antigen peptide transpo 97.7 1.4E-05 4.9E-10 65.4 3.0 37 9-47 210-246 (271)
26 2ghi_A Transport protein; mult 97.6 1.8E-05 6.1E-10 64.5 2.4 43 3-47 194-243 (260)
27 1mv5_A LMRA, multidrug resista 97.6 1.4E-05 4.9E-10 64.3 1.8 43 2-46 177-226 (243)
28 3gd7_A Fusion complex of cysti 97.5 2.9E-05 9.8E-10 66.9 2.2 37 9-47 207-243 (390)
29 2yl4_A ATP-binding cassette SU 97.4 0.00012 4E-09 66.4 4.5 37 9-47 535-571 (595)
30 3ux8_A Excinuclease ABC, A sub 97.4 6.2E-05 2.1E-09 69.1 2.7 44 2-47 584-641 (670)
31 3j16_B RLI1P; ribosome recycli 97.4 5.9E-05 2E-09 68.6 2.1 35 9-43 521-557 (608)
32 2bbs_A Cystic fibrosis transme 97.3 0.0001 3.5E-09 61.0 2.7 36 9-46 212-247 (290)
33 2cbz_A Multidrug resistance-as 97.3 7.6E-05 2.6E-09 59.8 1.6 37 9-47 182-218 (237)
34 3qf4_B Uncharacterized ABC tra 97.2 9.1E-05 3.1E-09 67.2 1.9 38 9-48 543-580 (598)
35 3qf4_A ABC transporter, ATP-bi 97.2 0.00011 3.7E-09 66.6 1.9 37 9-47 531-567 (587)
36 2vf7_A UVRA2, excinuclease ABC 97.1 0.00021 7.1E-09 67.2 2.6 37 9-47 786-828 (842)
37 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00025 8.5E-09 63.6 2.7 35 9-43 455-491 (538)
38 3ux8_A Excinuclease ABC, A sub 96.9 0.00032 1.1E-08 64.4 2.7 36 9-46 257-298 (670)
39 3g5u_A MCG1178, multidrug resi 96.9 0.0003 1E-08 69.1 2.3 39 9-49 1223-1261(1284)
40 2r6f_A Excinuclease ABC subuni 96.9 0.00036 1.2E-08 66.2 2.5 43 2-46 886-942 (972)
41 3bk7_A ABC transporter ATP-bin 96.8 0.0005 1.7E-08 62.5 2.7 37 9-46 525-563 (607)
42 2ygr_A Uvrabc system protein A 96.7 0.00063 2.1E-08 64.7 3.0 43 2-46 904-960 (993)
43 2iw3_A Elongation factor 3A; a 96.7 0.00068 2.3E-08 64.6 3.1 42 2-43 586-633 (986)
44 3ozx_A RNAse L inhibitor; ATP 96.5 0.001 3.4E-08 59.6 2.7 35 9-43 439-475 (538)
45 2r6f_A Excinuclease ABC subuni 96.5 0.0014 4.7E-08 62.3 3.5 36 9-46 559-600 (972)
46 3pih_A Uvrabc system protein A 96.4 0.0013 4.6E-08 62.3 3.1 36 9-46 519-560 (916)
47 4f4c_A Multidrug resistance pr 96.3 0.00076 2.6E-08 66.4 0.8 40 9-50 1269-1308(1321)
48 3g5u_A MCG1178, multidrug resi 95.9 0.0015 5.1E-08 64.2 0.4 38 9-48 578-615 (1284)
49 2vf7_A UVRA2, excinuclease ABC 95.9 0.0046 1.6E-07 58.1 3.6 36 9-46 434-475 (842)
50 2ygr_A Uvrabc system protein A 95.8 0.0025 8.5E-08 60.7 1.5 36 9-46 576-617 (993)
51 4f4c_A Multidrug resistance pr 95.4 0.0053 1.8E-07 60.5 2.3 39 9-49 606-644 (1321)
52 2ehv_A Hypothetical protein PH 95.2 0.016 5.6E-07 45.5 4.0 23 9-31 175-207 (251)
53 3j16_B RLI1P; ribosome recycli 94.8 0.013 4.4E-07 53.2 2.7 28 9-36 274-301 (608)
54 2obl_A ESCN; ATPase, hydrolase 94.7 0.0012 4.1E-08 55.9 -4.0 35 9-46 221-255 (347)
55 3ozx_A RNAse L inhibitor; ATP 94.5 0.012 4.1E-07 52.6 1.7 25 9-33 190-214 (538)
56 1yqt_A RNAse L inhibitor; ATP- 94.4 0.013 4.3E-07 52.5 1.7 24 9-32 211-234 (538)
57 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.0053 1.8E-07 53.9 -1.2 40 3-43 280-336 (460)
58 3bk7_A ABC transporter ATP-bin 94.0 0.024 8.3E-07 51.4 2.7 24 9-32 281-304 (607)
59 4aby_A DNA repair protein RECN 93.6 0.047 1.6E-06 46.6 3.6 30 9-39 349-382 (415)
60 1tf7_A KAIC; homohexamer, hexa 92.4 0.03 1E-06 49.7 0.7 23 9-31 178-209 (525)
61 3thx_A DNA mismatch repair pro 91.7 0.034 1.2E-06 52.9 0.2 34 9-43 778-811 (934)
62 2dpy_A FLII, flagellum-specifi 91.1 0.01 3.6E-07 51.7 -3.8 35 9-46 310-344 (438)
63 1cr0_A DNA primase/helicase; R 89.8 0.079 2.7E-06 43.1 0.6 26 9-34 190-237 (296)
64 2ff7_A Alpha-hemolysin translo 89.7 0.16 5.5E-06 40.5 2.4 24 22-46 209-232 (247)
65 4ad8_A DNA repair protein RECN 89.5 0.19 6.6E-06 44.4 3.0 24 9-33 451-474 (517)
66 2w0m_A SSO2452; RECA, SSPF, un 89.2 0.097 3.3E-06 40.3 0.7 25 9-33 161-193 (235)
67 2o8b_B DNA mismatch repair pro 89.0 0.13 4.3E-06 49.5 1.5 33 9-42 905-939 (1022)
68 4a74_A DNA repair and recombin 87.1 0.11 3.9E-06 40.0 -0.1 25 9-33 173-201 (231)
69 1tf7_A KAIC; homohexamer, hexa 86.9 0.092 3.1E-06 46.6 -0.8 25 9-33 410-444 (525)
70 3b5x_A Lipid A export ATP-bind 84.2 0.49 1.7E-05 42.4 2.6 25 22-47 544-568 (582)
71 3pih_A Uvrabc system protein A 84.1 0.44 1.5E-05 45.2 2.3 23 9-32 861-883 (916)
72 3b60_A Lipid A export ATP-bind 83.9 0.43 1.5E-05 42.8 2.1 25 22-47 544-568 (582)
73 2v9p_A Replication protein E1; 81.2 0.082 2.8E-06 43.7 -3.5 34 12-48 235-268 (305)
74 3arc_K Photosystem II reaction 81.1 1.6 5.4E-05 23.8 2.8 23 172-194 12-36 (37)
75 1n0w_A DNA repair protein RAD5 77.0 0.75 2.6E-05 35.5 1.1 25 9-33 167-210 (243)
76 1wb9_A DNA mismatch repair pro 74.4 1.8 6.3E-05 40.4 3.1 34 9-43 723-756 (800)
77 2pt7_A CAG-ALFA; ATPase, prote 67.3 0.27 9.1E-06 41.0 -3.9 25 9-34 268-292 (330)
78 1s96_A Guanylate kinase, GMP k 66.5 0.52 1.8E-05 36.8 -2.1 35 3-47 123-161 (219)
79 2cvh_A DNA repair and recombin 57.7 3.8 0.00013 30.8 1.4 25 9-33 149-186 (220)
80 1tq4_A IIGP1, interferon-induc 51.6 2 6.8E-05 36.9 -1.2 24 9-32 228-254 (413)
81 3kta_B Chromosome segregation 51.2 16 0.00053 27.1 3.9 21 9-30 120-140 (173)
82 1ni3_A YCHF GTPase, YCHF GTP-b 49.2 0.46 1.6E-05 40.6 -5.6 29 13-41 179-209 (392)
83 2crv_A IF-2MT, translation ini 34.5 30 0.001 24.2 2.9 23 24-47 44-66 (120)
84 1d1n_A Initiation factor 2; be 34.2 25 0.00084 23.8 2.3 22 24-46 37-58 (99)
85 3jvv_A Twitching mobility prot 30.0 3.9 0.00013 34.3 -2.8 23 9-32 224-246 (356)
86 2dr3_A UPF0273 protein PH0284; 27.9 17 0.00057 27.6 0.7 23 9-31 166-196 (247)
87 1jjv_A Dephospho-COA kinase; P 27.7 24 0.00082 26.1 1.6 21 9-29 108-130 (206)
88 1ls1_A Signal recognition part 27.2 5.9 0.0002 32.1 -2.1 28 9-36 38-65 (295)
89 2eyu_A Twitching motility prot 23.7 5.1 0.00018 31.9 -3.1 23 9-32 126-148 (261)
90 2rdd_B UPF0092 membrane protei 23.0 64 0.0022 17.3 2.3 18 176-193 5-22 (37)
91 3b85_A Phosphate starvation-in 20.9 17 0.00059 27.6 -0.4 12 9-21 152-163 (208)
92 3arc_L Photosystem II reaction 20.1 68 0.0023 17.2 1.9 11 184-194 26-36 (37)
No 1
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.27 E-value=3.9e-07 Score=74.65 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=34.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|++++.|+++++
T Consensus 201 vi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 201 VCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999988
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.26 E-value=4.2e-07 Score=77.55 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=35.9
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++|+..+||||++|++|+++..|+++++ ...
T Consensus 192 vi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el-~~~ 229 (359)
T 3fvq_A 192 AVFVSHDREEALQYADRIAVMKQGRILQTASPHEL-YRQ 229 (359)
T ss_dssp EEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHH-HHS
T ss_pred EEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHH-HhC
Confidence 99999999999999999999999999999999998 543
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.22 E-value=3.9e-07 Score=77.86 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=35.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+|++++++||||++|++|++++.|+++++ ..
T Consensus 217 ii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev-~~ 253 (366)
T 3tui_C 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV-FS 253 (366)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH-HS
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.22 E-value=5.5e-07 Score=77.34 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+||||++|++|+++..|+++++ ..
T Consensus 187 ii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l-~~ 223 (381)
T 3rlf_A 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL-YH 223 (381)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH-Hh
Confidence 99999999999999999999999999999999997 54
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.16 E-value=9.1e-07 Score=72.29 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=39.1
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
.++++|+ ||++||++++++.+|||+++|++|++++.|+++++ ..
T Consensus 191 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~ 242 (262)
T 1b0u_A 191 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV-FG 242 (262)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 3556665 99999999999999999999999999999999988 54
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.13 E-value=6.3e-07 Score=73.80 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++++|||+++|++|++++.|+++++ ..
T Consensus 197 vi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~-~~ 233 (275)
T 3gfo_A 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV-FA 233 (275)
T ss_dssp EEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH-TH
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH-hc
Confidence 89999999999999999999999999999999998 54
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.13 E-value=1.2e-06 Score=71.73 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=39.2
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
+++++|+ ||++||++++++++|||+++|++|++++.|+++++ ..
T Consensus 197 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~ 248 (263)
T 2olj_A 197 EVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL-FD 248 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH-Hh
Confidence 3566665 99999999999999999999999999999999998 54
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.11 E-value=1.1e-06 Score=74.76 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..
T Consensus 194 vi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l-~~ 230 (353)
T 1oxx_K 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-YD 230 (353)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.11 E-value=1.3e-06 Score=74.39 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..
T Consensus 199 vi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l-~~ 235 (355)
T 1z47_A 199 SVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV-YE 235 (355)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 99999999999999999999999999999999988 54
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.11 E-value=1.1e-06 Score=74.88 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..
T Consensus 187 vi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l-~~ 223 (359)
T 2yyz_A 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV-YD 223 (359)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 11
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.10 E-value=1.2e-06 Score=70.59 Aligned_cols=37 Identities=16% Similarity=-0.010 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++.+|||+++|++|++++.|+++++ ..
T Consensus 180 vi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~-~~ 216 (240)
T 2onk_A 180 ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL-FS 216 (240)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.10 E-value=1.1e-06 Score=71.62 Aligned_cols=46 Identities=20% Similarity=-0.013 Sum_probs=40.4
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
.+|++|+ ||++||++++++.+|||+++|++|++++.|+++++ .+.+
T Consensus 184 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~~~ 237 (256)
T 1vpl_A 184 EVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL-KERY 237 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH-HHHT
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH-HHhc
Confidence 3566665 99999999999999999999999999999999998 6543
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.08 E-value=1.4e-06 Score=74.51 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+||||++|++|+++..|+++++ ..
T Consensus 187 vi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~-~~ 223 (362)
T 2it1_A 187 TVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV-YY 223 (362)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.08 E-value=1.4e-06 Score=74.77 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..
T Consensus 193 vi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l-~~ 229 (372)
T 1g29_1 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV-YD 229 (372)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.06 E-value=1.6e-06 Score=74.33 Aligned_cols=37 Identities=14% Similarity=-0.033 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+||||++|++|+++..|+++++ ..
T Consensus 195 vi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l-~~ 231 (372)
T 1v43_A 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV-YL 231 (372)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.06 E-value=1.2e-06 Score=74.41 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=35.3
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++|+..+|||+++|++|+++..|+++++ ..
T Consensus 181 ii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~-~~ 217 (348)
T 3d31_A 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI-FE 217 (348)
T ss_dssp EEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH-HS
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH-Hh
Confidence 99999999999999999999999999999999998 54
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.00 E-value=2.1e-06 Score=69.92 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=33.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|++++.|+++++
T Consensus 206 vi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (257)
T 1g6h_A 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240 (257)
T ss_dssp EEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHHh
Confidence 99999999999999999999999999999998877
No 18
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.96 E-value=3.7e-06 Score=68.19 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|++++.|+++++
T Consensus 186 viivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 186 IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999888
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.91 E-value=2.9e-06 Score=69.94 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=33.9
Q ss_pred h--hhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 I--IVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 I--ilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
| |++||++++++.+|||+++|++|++++.|+++++
T Consensus 214 v~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 214 LAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp CEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 8 9999999999999999999999999999999887
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.90 E-value=3.6e-06 Score=68.86 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++.+|||+++|++|+++..|+++++ ...
T Consensus 191 ii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~-~~~ 228 (266)
T 2yz2_A 191 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF-LEK 228 (266)
T ss_dssp EEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH-HHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH-hcC
Confidence 99999999999999999999999999999999988 654
No 21
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.83 E-value=5.9e-06 Score=67.53 Aligned_cols=44 Identities=9% Similarity=-0.307 Sum_probs=39.1
Q ss_pred hhhhhHH-----hhhcCCChhHHHhhhc-eEEEeeCCEEEEEecccccccc
Q psy863 2 VLWCILL-----IIVPIHVTSNTRDSIR-LLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 2 ~iw~lI~-----IilSTH~L~EaE~lcD-rI~Il~~G~li~~Gs~~~L~k~ 46 (216)
.++++|+ ||++||++++++.+|| |+++|++|++++.|+++++ ..
T Consensus 166 ~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l-~~ 215 (263)
T 2pjz_A 166 VISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSEL-LE 215 (263)
T ss_dssp HHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHH-HT
T ss_pred HHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHH-Hh
Confidence 3556665 8999999999999999 9999999999999999998 64
No 22
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.80 E-value=9.7e-06 Score=67.68 Aligned_cols=38 Identities=16% Similarity=0.034 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
||++||.++.+.. ||||++|++|+++..|+++++ .+..
T Consensus 242 vi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el-~~~~ 279 (306)
T 3nh6_A 242 TIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEAL-LSRG 279 (306)
T ss_dssp EEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHH-HHHT
T ss_pred EEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHH-HhcC
Confidence 8999999999988 999999999999999999999 6553
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.73 E-value=1.2e-05 Score=65.24 Aligned_cols=34 Identities=6% Similarity=-0.123 Sum_probs=32.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||++++++.+|||+++|++|+ ++.|+++++
T Consensus 182 vi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 182 VVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred EEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 8999999999999999999999999 999999887
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.73 E-value=1.4e-05 Score=64.76 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=36.1
Q ss_pred hhhhhHH--------hhhcCCChhHHHhh-hceEEEeeCCEEEEEeccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDS-IRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~l-cDrI~Il~~G~li~~Gs~~~L 43 (216)
.++++|+ ||++||++++++.+ |||+++|++|++++.|+++..
T Consensus 181 ~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (250)
T 2d2e_A 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELA 231 (250)
T ss_dssp HHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHH
Confidence 3556665 99999999999999 599999999999999998743
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.72 E-value=1.4e-05 Score=65.44 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=34.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++. |||+++|++|++++.|+++++ ...
T Consensus 210 viivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l-~~~ 246 (271)
T 2ixe_A 210 VLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQL-MER 246 (271)
T ss_dssp EEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHH-HHH
T ss_pred EEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH-HhC
Confidence 8999999999986 999999999999999999998 643
No 26
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.64 E-value=1.8e-05 Score=64.49 Aligned_cols=43 Identities=12% Similarity=-0.020 Sum_probs=37.2
Q ss_pred hhhhHH-------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 3 LWCILL-------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 3 iw~lI~-------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
++++|+ ||++||++++++. |||+++|++|+++..|+++++ ...
T Consensus 194 i~~~l~~l~~~~tviivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l-~~~ 243 (260)
T 2ghi_A 194 FQKAVEDLRKNRTLIIIAHRLSTISS-AESIILLNKGKIVEKGTHKDL-LKL 243 (260)
T ss_dssp HHHHHHHHTTTSEEEEECSSGGGSTT-CSEEEEEETTEEEEEECHHHH-HHH
T ss_pred HHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEEECCHHHH-Hhc
Confidence 455555 8999999999975 999999999999999999998 543
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.64 E-value=1.4e-05 Score=64.30 Aligned_cols=43 Identities=16% Similarity=-0.077 Sum_probs=37.2
Q ss_pred hhhhhHH-------hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 2 VLWCILL-------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 2 ~iw~lI~-------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
.++++|+ ||++||++++++. |||+++|++|++++.|+++++ ..
T Consensus 177 ~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~-~~ 226 (243)
T 1mv5_A 177 MVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNEL-VA 226 (243)
T ss_dssp HHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHH-HH
T ss_pred HHHHHHHHhcCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHH-Hh
Confidence 4566665 9999999999975 999999999999999999888 54
No 28
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.53 E-value=2.9e-05 Score=66.92 Aligned_cols=37 Identities=5% Similarity=-0.200 Sum_probs=32.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++.+ ..||||++|++|+++..|+++++ .+.
T Consensus 207 vi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el-~~~ 243 (390)
T 3gd7_A 207 VILCEARIEAM-LECDQFLVIEENKVRQYDSILEL-YHY 243 (390)
T ss_dssp EEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHH-HHC
T ss_pred EEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHH-HhC
Confidence 99999998765 55999999999999999999998 543
No 29
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.38 E-value=0.00012 Score=66.43 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=31.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++. ||||++|++|+++..|+++++ .+.
T Consensus 535 vi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l-~~~ 571 (595)
T 2yl4_A 535 VLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEEL-LSK 571 (595)
T ss_dssp EEEECCCHHHHHH-SSEEEEEETTEEEEEECSCC-----
T ss_pred EEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH-HhC
Confidence 8999999999975 999999999999999999999 653
No 30
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.38 E-value=6.2e-05 Score=69.12 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=37.9
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEe------eCCEEEEEeccccccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~~ 47 (216)
+++++|+ ||++||++++++ .||||++| ++|++++.|+++++ .+.
T Consensus 584 ~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~-~~~ 641 (670)
T 3ux8_A 584 RLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEV-AEV 641 (670)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHH-HTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHH-HhC
Confidence 3566665 999999999986 59999999 89999999999998 653
No 31
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.35 E-value=5.9e-05 Score=68.57 Aligned_cols=35 Identities=3% Similarity=-0.273 Sum_probs=34.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeC--CEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFP--GYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~--G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++ |++++.|+|+++
T Consensus 521 viivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 521 AFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp EEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 99999999999999999999997 999999999998
No 32
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.29 E-value=0.0001 Score=60.98 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=33.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++. |||+++|++|++++.|+++++ ..
T Consensus 212 viivtHd~~~~~~-~d~i~~l~~G~i~~~g~~~~l-~~ 247 (290)
T 2bbs_A 212 RILVTSKMEHLKK-ADKILILHEGSSYFYGTFSEL-QN 247 (290)
T ss_dssp EEEECCCHHHHHH-SSEEEEEETTEEEEEECHHHH-HH
T ss_pred EEEEecCHHHHHc-CCEEEEEECCeEEEeCCHHHH-hh
Confidence 9999999999975 999999999999999999888 53
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.26 E-value=7.6e-05 Score=59.84 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=33.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
||++||++++++ .|||+++|++|++++.|+++++ ...
T Consensus 182 viivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~-~~~ 218 (237)
T 2cbz_A 182 RILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQEL-LAR 218 (237)
T ss_dssp EEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHH-HHH
T ss_pred EEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHH-hhc
Confidence 999999999986 5999999999999999999998 543
No 34
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.23 E-value=9.1e-05 Score=67.19 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=35.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
+|++||.++.++. ||||++|++|+++..|+++++ .++.
T Consensus 543 ~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l-~~~~ 580 (598)
T 3qf4_B 543 SIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDEL-IQKR 580 (598)
T ss_dssp EEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHH-HHTT
T ss_pred EEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH-HhCC
Confidence 8999999999987 999999999999999999999 6653
No 35
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.18 E-value=0.00011 Score=66.56 Aligned_cols=37 Identities=8% Similarity=-0.058 Sum_probs=34.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|++||.++.+. .||||++|++|+++..|+++++ .++
T Consensus 531 vi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el-~~~ 567 (587)
T 3qf4_A 531 TFIITQKIPTAL-LADKILVLHEGKVAGFGTHKEL-LEH 567 (587)
T ss_dssp EEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHH-HHH
T ss_pred EEEEecChHHHH-hCCEEEEEECCEEEEECCHHHH-HhC
Confidence 999999999996 6999999999999999999999 654
No 36
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.07 E-value=0.00021 Score=67.18 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=34.1
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEeccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~~ 47 (216)
||++||+++++ ..||||++| ++|++++.|+++++ .+.
T Consensus 786 VIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el-~~~ 828 (842)
T 2vf7_A 786 VIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEV-AQA 828 (842)
T ss_dssp EEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHH-TTC
T ss_pred EEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHH-HhC
Confidence 99999999999 679999999 79999999999998 653
No 37
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.03 E-value=0.00025 Score=63.57 Aligned_cols=35 Identities=11% Similarity=-0.220 Sum_probs=33.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeC--CEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFP--GYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~--G~li~~Gs~~~L 43 (216)
||++||+++++..+|||+++|++ |++.+.|+++++
T Consensus 455 vi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 455 ALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHH
Confidence 99999999999999999999996 899999999887
No 38
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.94 E-value=0.00032 Score=64.40 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=33.1
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||++||++++++. |||+++| ++|++++.|+++++ ..
T Consensus 257 vi~vtHd~~~~~~-~d~ii~l~~g~~~~~G~i~~~g~~~~~-~~ 298 (670)
T 3ux8_A 257 LIVVEHDEDTMLA-ADYLIDIGPGAGIHGGEVVAAGTPEEV-MN 298 (670)
T ss_dssp EEEECCCHHHHHH-CSEEEEECSSSGGGCCSEEEEECHHHH-HT
T ss_pred EEEEeCCHHHHhh-CCEEEEecccccccCCEEEEecCHHHH-hc
Confidence 9999999999875 9999999 99999999999887 54
No 39
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.91 E-value=0.0003 Score=69.14 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=35.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
||+.||.+++++. ||||++|++|+++..|+++++ .++.|
T Consensus 1223 vi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l-~~~~g 1261 (1284)
T 3g5u_A 1223 CIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQL-LAQKG 1261 (1284)
T ss_dssp EEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHH-HHSCS
T ss_pred EEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH-HhCCC
Confidence 8999999999976 999999999999999999999 76544
No 40
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.89 E-value=0.00036 Score=66.19 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=37.6
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
.+|++|+ ||++||+|++++ .||||++| ++|++++.|+++++ ..
T Consensus 886 ~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el-~~ 942 (972)
T 2r6f_A 886 RLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEV-AE 942 (972)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHH-HT
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHH-Hh
Confidence 3566665 999999999985 69999999 79999999999998 64
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.80 E-value=0.0005 Score=62.47 Aligned_cols=37 Identities=14% Similarity=-0.190 Sum_probs=34.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeC--CEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFP--GYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~--G~li~~Gs~~~L~k~ 46 (216)
||++||+++++..+|||+++|++ |++.+.|+++++ ..
T Consensus 525 vi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~-~~ 563 (607)
T 3bk7_A 525 ALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM-RE 563 (607)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH-HH
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHH-Hh
Confidence 89999999999999999999996 899999999888 53
No 42
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.75 E-value=0.00063 Score=64.75 Aligned_cols=43 Identities=14% Similarity=-0.003 Sum_probs=37.3
Q ss_pred hhhhhHH--------hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 2 VLWCILL--------IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
.+|++|+ ||++||++++++ .||||++| ++|++++.|+++++ ..
T Consensus 904 ~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gg~~~G~Iv~~G~~~el-~~ 960 (993)
T 2ygr_A 904 KLLNVINGLVDKGNTVIVIEHNLDVIK-TSDWIIDLGPEGGAGGGTVVAQGTPEDV-AA 960 (993)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSTTSCSEEEEEECHHHH-HH
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEECCCcCCCCCEEEEecCHHHH-Hh
Confidence 3566665 999999999985 69999999 79999999999998 64
No 43
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.74 E-value=0.00068 Score=64.60 Aligned_cols=42 Identities=14% Similarity=-0.177 Sum_probs=36.6
Q ss_pred hhhhhHH-----hhhcCCChhHHHhhhceEEEeeCCEEE-EEeccccc
Q psy863 2 VLWCILL-----IIVPIHVTSNTRDSIRLLATYFPGYAM-ICGFKLLG 43 (216)
Q Consensus 2 ~iw~lI~-----IilSTH~L~EaE~lcDrI~Il~~G~li-~~Gs~~~L 43 (216)
+++++|+ ||++||++++++.+|||+++|++|+++ +.|+++++
T Consensus 586 ~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 586 WLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 3566665 999999999999999999999999997 68988775
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.001 Score=59.62 Aligned_cols=35 Identities=9% Similarity=-0.160 Sum_probs=30.0
Q ss_pred hhhcCCChhHHHhhhceEEEeeC--CEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFP--GYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~--G~li~~Gs~~~L 43 (216)
||++||+++++..+||||++|++ |+....+++..+
T Consensus 439 vi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 439 TFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 89999999999999999999986 566666666665
No 45
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.51 E-value=0.0014 Score=62.27 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||+.||++++++ .||||++| ++|++++.|+++++ .+
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~-~~ 600 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEV-MN 600 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTT-TT
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHH-Hh
Confidence 999999999997 59999999 89999999999998 54
No 46
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.45 E-value=0.0013 Score=62.26 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=33.4
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||++||+++.+.. ||||++| ++|++++.|+++++ .+
T Consensus 519 vivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~-~~ 560 (916)
T 3pih_A 519 VIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDEL-LK 560 (916)
T ss_dssp EEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHH-HH
T ss_pred EEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhh-hc
Confidence 9999999999976 9999999 99999999999987 54
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.34 E-value=0.00076 Score=66.44 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=35.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGA 50 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~ 50 (216)
+|+.||.|+-+.. ||||++|++||++..|++++| .++.|.
T Consensus 1269 vI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eL-l~~~g~ 1308 (1321)
T 4f4c_A 1269 CIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQL-MSEKGA 1308 (1321)
T ss_dssp EEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHH-HHCC--
T ss_pred EEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHH-HhCCcH
Confidence 8999999999977 999999999999999999999 776553
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.90 E-value=0.0015 Score=64.21 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=35.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
+|+.||.++.+.. ||||.+|++|+++..|+++++ .++.
T Consensus 578 ~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l-~~~~ 615 (1284)
T 3g5u_A 578 TIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDEL-MREK 615 (1284)
T ss_dssp EEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHH-HHTT
T ss_pred EEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH-HhCC
Confidence 8999999999987 999999999999999999998 6553
No 49
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.88 E-value=0.0046 Score=58.13 Aligned_cols=36 Identities=17% Similarity=-0.034 Sum_probs=33.0
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||+.||+++.++ .||||++| ++|++++.|+++++ .+
T Consensus 434 VIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~-~~ 475 (842)
T 2vf7_A 434 LFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGL-KH 475 (842)
T ss_dssp EEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGG-GG
T ss_pred EEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHH-Hh
Confidence 999999999886 69999999 89999999999998 54
No 50
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.82 E-value=0.0025 Score=60.71 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=33.1
Q ss_pred hhhcCCChhHHHhhhceEEEe------eCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATY------FPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il------~~G~li~~Gs~~~L~k~ 46 (216)
||+.||++++++ .||||++| ++|++++.|+++++ .+
T Consensus 576 VIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~-~~ 617 (993)
T 2ygr_A 576 LIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDEL-LR 617 (993)
T ss_dssp EEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHH-HH
T ss_pred EEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHh-hh
Confidence 999999999987 69999999 79999999999887 54
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.43 E-value=0.0053 Score=60.50 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=35.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG 49 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~ 49 (216)
+|+.||.++-+.. ||+|++|++|+++..|+.++| .++.|
T Consensus 606 ~iiiaHrls~i~~-aD~Iivl~~G~ive~Gth~eL-~~~~g 644 (1321)
T 4f4c_A 606 TIIIAHRLSTIRN-ADLIISCKNGQVVEVGDHRAL-MAQQG 644 (1321)
T ss_dssp EEEECSCTTTTTT-CSEEEEEETTEEEEEECHHHH-HTTTC
T ss_pred EEEEcccHHHHHh-CCEEEEeeCCeeeccCCHHHH-HHhhh
Confidence 8899999999866 999999999999999999999 77644
No 52
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.16 E-value=0.016 Score=45.49 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=18.2
Q ss_pred hhhcCCChhHH---------Hhhh-ceEEEeeC
Q psy863 9 IIVPIHVTSNT---------RDSI-RLLATYFP 31 (216)
Q Consensus 9 IilSTH~L~Ea---------E~lc-DrI~Il~~ 31 (216)
||++||.++++ +.+| |++++|++
T Consensus 175 ii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 175 TILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999 7899 99999953
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.013 Score=53.20 Aligned_cols=28 Identities=11% Similarity=-0.023 Sum_probs=25.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMI 36 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~ 36 (216)
||++||+++++..+||||.+|++|+..+
T Consensus 274 vi~vtHdl~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 274 VICVEHDLSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp EEEECSCHHHHHHHCSEEEEEESCTTTE
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCcccc
Confidence 9999999999999999999999876443
No 54
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.73 E-value=0.0012 Score=55.85 Aligned_cols=35 Identities=3% Similarity=-0.089 Sum_probs=32.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
|+++||+|+ +.+||++.+|.+|+++.+|++.++ ..
T Consensus 221 Vl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~-~~ 255 (347)
T 2obl_A 221 VLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE-NH 255 (347)
T ss_dssp EECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT-TC
T ss_pred EEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc-CC
Confidence 789999999 789999999999999999999998 53
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.51 E-value=0.012 Score=52.65 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=23.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~ 33 (216)
||++||+++++..+||||.+|++|.
T Consensus 190 ii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 190 VIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEET
T ss_pred EEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999998754
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.44 E-value=0.013 Score=52.47 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=22.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
||++||+++++..+||||.+|++|
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999864
No 57
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.0053 Score=53.90 Aligned_cols=40 Identities=8% Similarity=-0.130 Sum_probs=34.3
Q ss_pred hhhhHH-----hhhcCCChh------HHHhhhce-----EEEee-CCEEEEEeccccc
Q psy863 3 LWCILL-----IIVPIHVTS------NTRDSIRL-----LATYF-PGYAMICGFKLLG 43 (216)
Q Consensus 3 iw~lI~-----IilSTH~L~------EaE~lcDr-----I~Il~-~G~li~~Gs~~~L 43 (216)
++++++ ++++||+.+ +++.+||| |++|+ +|+++ .|+++++
T Consensus 280 l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 280 LHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 455555 888899887 99999999 99999 99999 9998877
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.03 E-value=0.024 Score=51.39 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=22.7
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
||++||+++++..+||||.+|++|
T Consensus 281 vIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 281 VLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEEEecChHHHHhhCCEEEEECCC
Confidence 999999999999999999999865
No 59
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.58 E-value=0.047 Score=46.57 Aligned_cols=30 Identities=10% Similarity=-0.019 Sum_probs=25.6
Q ss_pred hhhcCCChhHHHhhhceEEEe----eCCEEEEEec
Q psy863 9 IIVPIHVTSNTRDSIRLLATY----FPGYAMICGF 39 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il----~~G~li~~Gs 39 (216)
||++||+++.++ .|||+.+| ++|+++....
T Consensus 349 vi~itH~~~~~~-~~d~i~~l~k~~~~G~~~~~~~ 382 (415)
T 4aby_A 349 VLVVTHLAQIAA-RAHHHYKVEKQVEDGRTVSHVR 382 (415)
T ss_dssp EEEECSCHHHHT-TCSEEEEEEEEEETTEEEEEEE
T ss_pred EEEEeCcHHHHh-hcCeEEEEEEeccCCceEEEEE
Confidence 899999997774 69999999 9999887543
No 60
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.41 E-value=0.03 Score=49.68 Aligned_cols=23 Identities=0% Similarity=-0.151 Sum_probs=21.4
Q ss_pred hhhcCCChhH---------HHhhhceEEEeeC
Q psy863 9 IIVPIHVTSN---------TRDSIRLLATYFP 31 (216)
Q Consensus 9 IilSTH~L~E---------aE~lcDrI~Il~~ 31 (216)
||++||++++ ++.+||++++|++
T Consensus 178 vl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 178 TVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9999999999 4788999999999
No 61
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.68 E-value=0.034 Score=52.87 Aligned_cols=34 Identities=6% Similarity=-0.176 Sum_probs=30.8
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
||++||+++ ...+||++..|.+|++.+.++.+++
T Consensus 778 vl~aTH~~e-l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 778 CMFATHFHE-LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEESCGG-GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEEcCcHH-HHHHhcccceeEeeEEEEEecCCcE
Confidence 899999965 5578999999999999999999888
No 62
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.07 E-value=0.01 Score=51.67 Aligned_cols=35 Identities=3% Similarity=-0.135 Sum_probs=32.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEecccccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
|+++||+++ +.+||++.+|.+|+++.+|++.++ ..
T Consensus 310 Vlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~-~~ 344 (438)
T 2dpy_A 310 VLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEA-GH 344 (438)
T ss_dssp EECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHT-TC
T ss_pred EEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHc-cC
Confidence 789999999 789999999999999999999988 54
No 63
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.76 E-value=0.079 Score=43.05 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=21.6
Q ss_pred hhhcCCCh--h--------------------HHHhhhceEEEeeCCEE
Q psy863 9 IIVPIHVT--S--------------------NTRDSIRLLATYFPGYA 34 (216)
Q Consensus 9 IilSTH~L--~--------------------EaE~lcDrI~Il~~G~l 34 (216)
||++||.. + +++.+||+|++|++|+.
T Consensus 190 vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 190 LVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp EEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred EEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 99999995 6 79999999999999986
No 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.71 E-value=0.16 Score=40.50 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=21.9
Q ss_pred hhceEEEeeCCEEEEEecccccccc
Q psy863 22 SIRLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 22 lcDrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
.|||+++|++|++++.|+++++ ..
T Consensus 209 ~~d~v~~l~~G~i~~~g~~~~l-~~ 232 (247)
T 2ff7_A 209 NADRIIVMEKGKIVEQGKHKEL-LS 232 (247)
T ss_dssp TSSEEEEEETTEEEEEECHHHH-HT
T ss_pred hCCEEEEEECCEEEEECCHHHH-Hh
Confidence 3999999999999999999998 54
No 65
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=89.50 E-value=0.19 Score=44.39 Aligned_cols=24 Identities=8% Similarity=-0.016 Sum_probs=21.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~ 33 (216)
||++||+++.+. .|||+++|.+|.
T Consensus 451 vi~itH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 451 VLVVTHLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp EEEECCCHHHHH-HSSEEEEEECCE
T ss_pred EEEEecCHHHHH-hCCEEEEEeccc
Confidence 999999999887 599999997763
No 66
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.21 E-value=0.097 Score=40.31 Aligned_cols=25 Identities=4% Similarity=-0.092 Sum_probs=19.7
Q ss_pred hhhcCCCh--------hHHHhhhceEEEeeCCE
Q psy863 9 IIVPIHVT--------SNTRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L--------~EaE~lcDrI~Il~~G~ 33 (216)
||++||.+ ..++.+||++++|++++
T Consensus 161 vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 161 IYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp EEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred EEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 99999999 56999999999998754
No 67
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=89.00 E-value=0.13 Score=49.52 Aligned_cols=33 Identities=15% Similarity=-0.039 Sum_probs=24.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEE--EEecccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAM--ICGFKLL 42 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li--~~Gs~~~ 42 (216)
+|++||++++++.+||++.++ +|++. ..|++.+
T Consensus 905 vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 905 TLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp EEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred EEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 999999999999999999987 58888 4555443
No 68
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.12 E-value=0.11 Score=39.95 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=18.1
Q ss_pred hhhcCCChhH----HHhhhceEEEeeCCE
Q psy863 9 IIVPIHVTSN----TRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L~E----aE~lcDrI~Il~~G~ 33 (216)
||++||.+++ ++.+||++++|++|+
T Consensus 173 vi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 173 VFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEEEEECC---------CCSEEEEEEECT
T ss_pred EEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9999998887 999999999998864
No 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.88 E-value=0.092 Score=46.57 Aligned_cols=25 Identities=4% Similarity=-0.237 Sum_probs=23.7
Q ss_pred hhhcCCCh----------hHHHhhhceEEEeeCCE
Q psy863 9 IIVPIHVT----------SNTRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L----------~EaE~lcDrI~Il~~G~ 33 (216)
||++||++ ++++.+||++++|++|+
T Consensus 410 vilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 410 GLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999 88999999999999987
No 70
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.24 E-value=0.49 Score=42.40 Aligned_cols=25 Identities=8% Similarity=-0.148 Sum_probs=22.8
Q ss_pred hhceEEEeeCCEEEEEeccccccccc
Q psy863 22 SIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 22 lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
.||||++|++|+++..|+++++ .+.
T Consensus 544 ~~d~i~~l~~G~i~~~g~~~~l-~~~ 568 (582)
T 3b5x_A 544 QADEILVVDEGEIIERGRHADL-LAQ 568 (582)
T ss_pred hCCEEEEEECCEEEEECCHHHH-HhC
Confidence 5999999999999999999998 654
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=84.09 E-value=0.44 Score=45.22 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
||++||+|+++.. ||||++|..|
T Consensus 861 VIvI~HdL~~i~~-ADrIivLgp~ 883 (916)
T 3pih_A 861 VIVIEHNLDVIKN-ADHIIDLGPE 883 (916)
T ss_dssp EEEECCCHHHHTT-CSEEEEEESS
T ss_pred EEEEeCCHHHHHh-CCEEEEecCC
Confidence 9999999999976 9999999543
No 72
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=83.87 E-value=0.43 Score=42.80 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=22.9
Q ss_pred hhceEEEeeCCEEEEEeccccccccc
Q psy863 22 SIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 22 lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
.||||++|++|+++..|+++++ .+.
T Consensus 544 ~~d~i~~l~~G~i~~~g~~~~l-~~~ 568 (582)
T 3b60_A 544 QADEIVVVEDGIIVERGTHSEL-LAQ 568 (582)
T ss_dssp TCSEEEEEETTEEEEEECHHHH-HHH
T ss_pred hCCEEEEEECCEEEEecCHHHH-HHc
Confidence 5999999999999999999998 654
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=81.16 E-value=0.082 Score=43.74 Aligned_cols=34 Identities=6% Similarity=-0.423 Sum_probs=25.8
Q ss_pred cCCChhHHHhhhceEEEeeCCEEEEEecccccccccc
Q psy863 12 PIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEAN 48 (216)
Q Consensus 12 STH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~ 48 (216)
-||.++.+ ..|||| +|++|+++..|+++++ +..+
T Consensus 235 ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el-~~~y 268 (305)
T 2v9p_A 235 LHSRVQTF-RFEQPC-TDESGEQPFNITDADW-KSFF 268 (305)
T ss_dssp GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH-HHHH
T ss_pred HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH-HHHH
Confidence 38999876 579999 9999999999999988 5443
No 74
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=81.12 E-value=1.6 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=18.9
Q ss_pred HHHHH-HHHHHHHHHH-HHHHhhcc
Q psy863 172 VQGVL-FLVFLLFATA-MLLFTYSY 194 (216)
Q Consensus 172 l~~~~-~~p~~~~~~a-~~~~~~~~ 194 (216)
..++. ++|.+|.++| +|...++|
T Consensus 12 ivDvmPiIPv~f~lLafvWQAav~f 36 (37)
T 3arc_K 12 LVDVLPVIPVLFLALAFVWQAAVGF 36 (37)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhchHHHHHHHHHHHHHHhhcC
Confidence 44666 8999999999 88888877
No 75
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.98 E-value=0.75 Score=35.51 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=15.1
Q ss_pred hhhcCCChhHHHh-------------------hhceEEEeeCCE
Q psy863 9 IIVPIHVTSNTRD-------------------SIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L~EaE~-------------------lcDrI~Il~~G~ 33 (216)
||+++|...+.+. +||++++|++|+
T Consensus 167 vi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 167 VVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp EEEEC-------------------------CCTTCEEEEEEECS
T ss_pred EEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 9999999888765 899999998763
No 76
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=74.39 E-value=1.8 Score=40.39 Aligned_cols=34 Identities=6% Similarity=-0.266 Sum_probs=29.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG 43 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L 43 (216)
+|++||+++.+ .+||++..+.+|++.+....+++
T Consensus 723 vl~~TH~~el~-~l~d~~~~v~n~~~~~~~~~~~l 756 (800)
T 1wb9_A 723 TLFATHYFELT-QLPEKMEGVANVHLDALEHGDTI 756 (800)
T ss_dssp EEEECSCGGGG-GHHHHSTTEEEEEEEEEEETTEE
T ss_pred EEEEeCCHHHH-HHhhhhhceEEEEEEEEEcCCcE
Confidence 99999999776 48999999999999988776666
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=67.32 E-value=0.27 Score=40.98 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.2
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYA 34 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~l 34 (216)
+|+|||.++ +...|||+.+|.+|+.
T Consensus 268 vi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 268 TLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred EEEEEcccH-HHHHhhhheehhcCCc
Confidence 799999999 8889999999988753
No 78
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=66.46 E-value=0.52 Score=36.78 Aligned_cols=35 Identities=9% Similarity=-0.140 Sum_probs=26.6
Q ss_pred hhhhHH----hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccc
Q psy863 3 LWCILL----IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 3 iw~lI~----IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
+|+.+. |+++||+++++++ |+ +.+| .++++++ +++
T Consensus 123 i~~~l~~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i-~~r 161 (219)
T 1s96_A 123 IRQKMPHARSIFILPPSKIELDR---RL--RGRG----QDSEEVI-AKR 161 (219)
T ss_dssp HHHHCTTCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHH-HHH
T ss_pred HHHHccCCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHH-HHH
Confidence 455554 8999999999887 43 7888 6888888 654
No 79
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=57.65 E-value=3.8 Score=30.84 Aligned_cols=25 Identities=12% Similarity=-0.154 Sum_probs=21.3
Q ss_pred hhhcCCChh-------------HHHhhhceEEEeeCCE
Q psy863 9 IIVPIHVTS-------------NTRDSIRLLATYFPGY 33 (216)
Q Consensus 9 IilSTH~L~-------------EaE~lcDrI~Il~~G~ 33 (216)
||+++|... .++.+||++++|++..
T Consensus 149 vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~ 186 (220)
T 2cvh_A 149 VIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLP 186 (220)
T ss_dssp EEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred EEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEec
Confidence 889999876 5789999999998753
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=51.56 E-value=2 Score=36.94 Aligned_cols=24 Identities=4% Similarity=-0.168 Sum_probs=19.9
Q ss_pred hhhcCCChhH--HHhhhceEE-EeeCC
Q psy863 9 IIVPIHVTSN--TRDSIRLLA-TYFPG 32 (216)
Q Consensus 9 IilSTH~L~E--aE~lcDrI~-Il~~G 32 (216)
|++|||++++ +|++||+|. .+..|
T Consensus 228 iliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 228 FLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp EECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred EEEecCcCCccCHHHHHHHHHHhCccc
Confidence 6789999998 999999995 55444
No 81
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=51.23 E-value=16 Score=27.14 Aligned_cols=21 Identities=10% Similarity=-0.143 Sum_probs=16.4
Q ss_pred hhhcCCChhHHHhhhceEEEee
Q psy863 9 IIVPIHVTSNTRDSIRLLATYF 30 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~ 30 (216)
+|++||.... ...||+++.+.
T Consensus 120 ~ivith~~~~-~~~ad~i~~v~ 140 (173)
T 3kta_B 120 FIVITLRDVM-MANADKIIGVS 140 (173)
T ss_dssp EEEECSCHHH-HTTCSEEEEEE
T ss_pred EEEEEecHHH-HHhCCEEEEEE
Confidence 8888899765 46799998663
No 82
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=49.17 E-value=0.46 Score=40.61 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=26.0
Q ss_pred CCChhHHHhhhceEE-EeeCC-EEEEEeccc
Q psy863 13 IHVTSNTRDSIRLLA-TYFPG-YAMICGFKL 41 (216)
Q Consensus 13 TH~L~EaE~lcDrI~-Il~~G-~li~~Gs~~ 41 (216)
||.+.+++.+||++. +|++| ++++.|+..
T Consensus 179 sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 179 MKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred cccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 899999999999999 99999 888777653
No 83
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.54 E-value=30 Score=24.21 Aligned_cols=23 Identities=9% Similarity=-0.154 Sum_probs=19.8
Q ss_pred ceEEEeeCCEEEEEeccccccccc
Q psy863 24 RLLATYFPGYAMICGFKLLGNFEA 47 (216)
Q Consensus 24 DrI~Il~~G~li~~Gs~~~L~k~~ 47 (216)
.++=++++|.+++.|.+..| |+-
T Consensus 44 ~~vRviRdg~vI~eG~i~SL-krf 66 (120)
T 2crv_A 44 KKFKLIRNGQVIWKGSLTSL-KHH 66 (120)
T ss_dssp SCEEEEETTEEEEEECCSEE-ESS
T ss_pred CeEEEEECCEEEEEeEehhh-ccc
Confidence 46789999999999999999 653
No 84
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=34.21 E-value=25 Score=23.77 Aligned_cols=22 Identities=9% Similarity=-0.230 Sum_probs=19.5
Q ss_pred ceEEEeeCCEEEEEecccccccc
Q psy863 24 RLLATYFPGYAMICGFKLLGNFE 46 (216)
Q Consensus 24 DrI~Il~~G~li~~Gs~~~L~k~ 46 (216)
.++=++++|.+++.|.+..| |+
T Consensus 37 ~~vRv~Rd~~vI~eG~i~SL-kr 58 (99)
T 1d1n_A 37 SKVRLIRQGIVVYEGEIDSL-KR 58 (99)
T ss_dssp SEEEEECSSSEEEEEECSEE-EC
T ss_pred CeEEEEECCEEEEEeEEhhh-cc
Confidence 56889999999999999999 64
No 85
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=29.96 E-value=3.9 Score=34.29 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
||.|||.++.+ ..|||+..|..|
T Consensus 224 vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 224 VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred EEEEEccChHH-HHHHHHhhhcCc
Confidence 89999999998 679999999665
No 86
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.92 E-value=17 Score=27.63 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=18.4
Q ss_pred hhhcCCChhH--------HHhhhceEEEeeC
Q psy863 9 IIVPIHVTSN--------TRDSIRLLATYFP 31 (216)
Q Consensus 9 IilSTH~L~E--------aE~lcDrI~Il~~ 31 (216)
|++++|...+ ++..||.++.|++
T Consensus 166 vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 166 SIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp EEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred EEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8999999887 5788999999975
No 87
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=27.70 E-value=24 Score=26.14 Aligned_cols=21 Identities=0% Similarity=-0.046 Sum_probs=11.2
Q ss_pred hhhcCCChhHH--HhhhceEEEe
Q psy863 9 IIVPIHVTSNT--RDSIRLLATY 29 (216)
Q Consensus 9 IilSTH~L~Ea--E~lcDrI~Il 29 (216)
||+.+|.+.|. ...||+++++
T Consensus 108 vv~~~~~l~e~~~~~~~d~vi~l 130 (206)
T 1jjv_A 108 TLFVVPLLIENKLTALCDRILVV 130 (206)
T ss_dssp EEEECTTTTTTTCGGGCSEEEEE
T ss_pred EEEEechhhhcCcHhhCCEEEEE
Confidence 45555666554 4555554444
No 88
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=27.22 E-value=5.9 Score=32.11 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=26.1
Q ss_pred hhhcCCChhHHHhhhceEEEeeCCEEEE
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPGYAMI 36 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G~li~ 36 (216)
+|.+.|.++-++.++||+..+.+|+++.
T Consensus 38 Ll~ad~~~~~~~~l~d~v~~~~~g~~~~ 65 (295)
T 1ls1_A 38 LMDADVNLEVARDFVERVREEALGKQVL 65 (295)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcccccc
Confidence 9999999999999999999999988764
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=23.72 E-value=5.1 Score=31.87 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=19.6
Q ss_pred hhhcCCChhHHHhhhceEEEeeCC
Q psy863 9 IIVPIHVTSNTRDSIRLLATYFPG 32 (216)
Q Consensus 9 IilSTH~L~EaE~lcDrI~Il~~G 32 (216)
|++|||..+ +...|||++.|..+
T Consensus 126 vl~t~H~~~-~~~~~dri~~l~~~ 148 (261)
T 2eyu_A 126 VFGTLHTNT-AIDTIHRIVDIFPL 148 (261)
T ss_dssp EEEEECCSS-HHHHHHHHHHTSCG
T ss_pred EEEEeCcch-HHHHHHHHhhhcCc
Confidence 899999987 67889999988653
No 90
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.01 E-value=64 Score=17.27 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy863 176 LFLVFLLFATAMLLFTYS 193 (216)
Q Consensus 176 ~~~p~~~~~~a~~~~~~~ 193 (216)
.++|++.++..++|..++
T Consensus 5 ~~l~~v~~~~ifYFl~iR 22 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMILR 22 (37)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 467877777667776653
No 91
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=20.88 E-value=17 Score=27.63 Aligned_cols=12 Identities=0% Similarity=-0.103 Sum_probs=4.7
Q ss_pred hhhcCCChhHHHh
Q psy863 9 IIVPIHVTSNTRD 21 (216)
Q Consensus 9 IilSTH~L~EaE~ 21 (216)
|| +||++++++.
T Consensus 152 ii-vtHd~~~~~~ 163 (208)
T 3b85_A 152 MV-VTGDITQVDL 163 (208)
T ss_dssp EE-EEEC------
T ss_pred EE-EECCHHHHhC
Confidence 66 8888887764
No 92
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.09 E-value=68 Score=17.21 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.1
Q ss_pred HHHHHHHhhcc
Q psy863 184 ATAMLLFTYSY 194 (216)
Q Consensus 184 ~~a~~~~~~~~ 194 (216)
.+|++|++|-|
T Consensus 26 vlavlFssyff 36 (37)
T 3arc_L 26 VLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhcc
Confidence 45778888866
Done!