RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy863
         (216 letters)



>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia
          coli [TaxId: 562]}
          Length = 305

 Score = 28.2 bits (61), Expect = 0.84
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)

Query: 46 EANGAGYQLTFLTSDDI--QVSAITDLIQSHV 75
               G+++  +   D    ++AI  L  S  
Sbjct: 26 AGKDLGFEVIKIAVPDGEKTLNAIDSLAASGA 57


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 25.3 bits (55), Expect = 3.6
 Identities = 13/72 (18%), Positives = 21/72 (29%)

Query: 47  ANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFAT 106
            +G   +L               L     P+       +S+I   L  + +  +  L A 
Sbjct: 62  RDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAP 121

Query: 107 LEEKKSALGISS 118
                 A G SS
Sbjct: 122 AARVGGASGPSS 133


>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 31

 Score = 23.1 bits (49), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 174 GVLFLVFLLFATAMLLFTYSYSLIVQGPESL 204
           G   +V + +A   ++F++S SL+V G   L
Sbjct: 1   GEPAIVQIGWAATCVMFSFSLSLVVWGRSGL 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 701,054
Number of extensions: 27617
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)