BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8630
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/463 (56%), Positives = 312/463 (67%), Gaps = 80/463 (17%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
M +I EG+TIVEDI+K REPLPSLEAVYLITP EKSV +L++DF Y+AAHV+F
Sbjct: 47 MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFF 106
Query: 61 TECF--YYFSFLL-------------VSILVL------------------------RMAN 81
T+ F+ L+ ++I L +M N
Sbjct: 107 TDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKN 166
Query: 82 --MERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
+ER+AEQIATLCATL EYP+VRYR ++ N LAQL+Q KLDAYKAD+PTMGEG +KA
Sbjct: 167 PILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226
Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------ 175
RSQLLILDRGFD SP+LHELT QAM+YDLL IEND
Sbjct: 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 286
Query: 176 ---------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
+VT++LK F SKRM G+K TMRDLSQM+KKMPQYQKELSKYST
Sbjct: 287 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYST 346
Query: 221 HLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR 280
HLHLAEDCMK YQG VDKLCRVEQDLA G DAEGE+IKD MR IVPILLD NVS YDK+R
Sbjct: 347 HLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 406
Query: 281 IIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKE 340
II+LYI KNGI+E+NLNKLI HAQI P + + I N+A+LG+ V D ++ + RKE
Sbjct: 407 IILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE 466
Query: 341 RISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSS 383
RISE TYQ+SRWTPI+KDIMED IEDKLD KH+P+++ ++S
Sbjct: 467 RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSAS 509
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/463 (56%), Positives = 312/463 (67%), Gaps = 80/463 (17%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
M +I EG+TIVEDI+K REPLPSLEAVYLITP EKSV +L++DF Y+AAHV+F
Sbjct: 59 MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFF 118
Query: 61 TECF--YYFSFLL-------------VSILVL------------------------RMAN 81
T+ F+ L+ ++I L +M N
Sbjct: 119 TDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKN 178
Query: 82 --MERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
+ER+AEQIATLCATL EYP+VRYR ++ N LAQL+Q KLDAYKAD+PTMGEG +KA
Sbjct: 179 PILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKA 238
Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------ 175
RSQLLILDRGFD SP+LHELT QAM+YDLL IEND
Sbjct: 239 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 298
Query: 176 ---------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
+VT++LK F SKRM G+K TMRDLSQM+KKMPQYQKELSKYST
Sbjct: 299 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYST 358
Query: 221 HLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR 280
HLHLAEDCMK YQG VDKLCRVEQDLA G DAEGE+IKD MR IVPILLD NVS YDK+R
Sbjct: 359 HLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 418
Query: 281 IIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKE 340
II+LYI KNGI+E+NLNKLI HAQI P + + I N+A+LG+ V D ++ + RKE
Sbjct: 419 IILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE 478
Query: 341 RISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSS 383
RISE TYQ+SRWTPI+KDIMED IEDKLD KH+P+++ ++S
Sbjct: 479 RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSAS 521
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/463 (55%), Positives = 305/463 (65%), Gaps = 85/463 (18%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
MHEI +EG+T+VEDI++ REPLP LEAVYLITP E+SVK LM DF + Y+ AH++F
Sbjct: 44 MHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFF 103
Query: 61 TE----------CFYYFSFLLVSILVLRMA------------------------------ 80
TE C + + ++ + +A
Sbjct: 104 TEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGI 163
Query: 81 -NMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
N ER AEQIATLCATLGEYPSVRYRSDFD N AQLVQQKLDAY+AD+PTMGEG +K
Sbjct: 164 PNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKD 223
Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------ 175
RSQLLILDRGFD +SPLLHELT QAMAYDLL IEND
Sbjct: 224 RSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDD 283
Query: 176 ---------------QVTKNLKKFIDSKRM-PQGDKQTMRDLSQMIKKMPQYQKELSKYS 219
VTK LK+F D KRM DK ++DLSQM+KKMPQYQKELSKYS
Sbjct: 284 LWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYS 343
Query: 220 THLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKM 279
THLHLAEDCMK YQ +VDKLC+VEQDLA G DA+GE+I+DHMRNIVPILLDQ +S YDK+
Sbjct: 344 THLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKI 403
Query: 280 RIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQI--- 336
RII+LYI++K GISE+NL KL+ HA I EK I ++ NLG+ + DG R+K+ Q
Sbjct: 404 RIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHT 463
Query: 337 -PRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAG 378
RKER ++ TYQMSRWTP +KDIME A+EDKLD +H+PFL G
Sbjct: 464 HNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNG 506
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/462 (53%), Positives = 292/462 (63%), Gaps = 85/462 (18%)
Query: 2 HEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFT 61
HEI +EG+T+VEDI++ REPLP LEAVYLITP E+SVK L DF + Y+ AH++FT
Sbjct: 45 HEIXSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLXADFQNPDNPQYRGAHIFFT 104
Query: 62 E----------CFYYFSFLLVSILVLRMA------------------------------- 80
E C + + ++ + +A
Sbjct: 105 EACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIP 164
Query: 81 NMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKAR 140
N ER AEQIATLCATLGEYPSVRYRSDFD N AQLVQQKLDAY+AD+PT GEG +K R
Sbjct: 165 NKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTXGEGPQKDR 224
Query: 141 SQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------- 175
SQLLILDRGFD +SPLLHELT QA AYDLL IEND
Sbjct: 225 SQLLILDRGFDPISPLLHELTFQAXAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDDL 284
Query: 176 --------------QVTKNLKKFIDSKRM-PQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
VTK LK+F D KR DK ++DLSQ +KK PQYQKELSKYST
Sbjct: 285 WVEXRHQHIAVVSQNVTKKLKQFADEKRXGTAADKAGIKDLSQXLKKXPQYQKELSKYST 344
Query: 221 HLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR 280
HLHLAEDC K YQ +VDKLC+VEQDLA G DA+GE+I+DH RNIVPILLDQ +S YDK+R
Sbjct: 345 HLHLAEDCXKQYQQHVDKLCKVEQDLAXGTDADGEKIRDHXRNIVPILLDQKISAYDKIR 404
Query: 281 IIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQI---- 336
II+LYI++K GISE+NL KL+ HA I EK I + NLG+ + DG R+K+ Q
Sbjct: 405 IILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDXQNLGVPIIQDGGRRKIPQPYHTH 464
Query: 337 PRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAG 378
RKER ++ TYQ SRWTP KDI E A+EDKLD +H+PFL G
Sbjct: 465 NRKERQADHTYQXSRWTPYXKDIXEAAVEDKLDTRHYPFLNG 506
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 179/456 (39%), Positives = 263/456 (57%), Gaps = 86/456 (18%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
M ++ EG+T++E+I+K REP+ ++A+Y I+P KSV + DF S + YKAA++YF
Sbjct: 51 MTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYF 110
Query: 61 TE------------------------------------------CFYYFSFLLVSILVLR 78
T+ FYY S +
Sbjct: 111 TDFCPDSLFNKIKASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRK 170
Query: 79 MANMERIAEQIATLCATLGEYPSVRYRSD-FDRNVELAQLVQQKL-DAYKADEPTMGEGV 136
ME +AEQI T+CATL E P VRY+S D +LAQLV++KL D YK DE + +G
Sbjct: 171 EVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKG- 229
Query: 137 EKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND--------------------- 175
K +SQLLI+DRGFD VS +LHELT QAMAYDLL IEND
Sbjct: 230 -KTQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKTDGKEKEAVLEEDDDL 288
Query: 176 --------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTH 221
++ K +K+ +K+ +G K ++ L+Q++KKMP ++K++SK H
Sbjct: 289 WVRVRHRHIAVVLEEIPKLMKEISSTKKATEG-KTSLSALTQLMKKMPHFRKQISKQVVH 347
Query: 222 LHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRI 281
L+LAEDCM ++ ++KLC+ EQDLA G DAEG+R+KD M ++P+LL++N N DK+R
Sbjct: 348 LNLAEDCMNKFKLNIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRA 407
Query: 282 IILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKER 341
++LYI NG +E+NL++LI + +I+ + I N ++LG+ V + K RK+R
Sbjct: 408 VLLYIFGINGTTEENLDRLIHNVKIE-DDSDMIRNWSHLGVPIVPPSQQAKPL---RKDR 463
Query: 342 ISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLA 377
+E T+Q+SRWTP +KDIMEDAI+++LD K +P+ +
Sbjct: 464 SAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCS 499
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 222/464 (47%), Gaps = 99/464 (21%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
M EI G+T+VED+ K R+ LP VY I P E+++ ++ DF T T Y+AAH++F
Sbjct: 44 MSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPT-YEAAHLFF 102
Query: 61 --------------TECFYYFSFL----------------------LVSILVLRMA--NM 82
+ Y L LV R + N+
Sbjct: 103 LSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSSYNI 162
Query: 83 ERIAEQIATLCATLGEYPSVRYRSDFDRNVE-LAQLVQQKLDAYKADEPTMGEGVEKAR- 140
+ + +++TLC T+ P VRY S E +A +Q+++D ++ +G+ AR
Sbjct: 163 DHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDM------SVSQGLINARE 216
Query: 141 ----SQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND--------------------- 175
SQ LILDR D SPL+HELT QA AYDLLNIEND
Sbjct: 217 GKLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQQRQVVLG 276
Query: 176 -------------------QVTKNLKKFIDSKRMPQGDKQTMRD------LSQMIKKMPQ 210
+V + +F S R QG + + + L QM+K +PQ
Sbjct: 277 EDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQ 336
Query: 211 YQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLD 270
+++++ KYS HL ++ A+ +D + EQ++ T E+ +G +++D + + +++D
Sbjct: 337 HREQMQKYSLHLDMSNAINMAFSSTIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVD 396
Query: 271 QNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNR 330
+ VS DK+R ++L +L KNG S LN L+ +A I P + AI NL LG V D
Sbjct: 397 RRVSTEDKLRCLMLCVLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRG 456
Query: 331 KKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFP 374
+K + R ER + Y +SRWTPIVKD+ME +LD + +P
Sbjct: 457 RKPKTMKRIER--DMPYVLSRWTPIVKDLMEYIATGQLDLESYP 498
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 55/229 (24%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
++++ G+T+ I + R PLP + A+Y ++P ++++ ++ND S Y ++ F
Sbjct: 77 VNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLKSD---KYSEFYINF 133
Query: 61 TECF--------------------------YYFSFLL---------VSILVLRMANMERI 85
T Y F++ +S L + + +
Sbjct: 134 TSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTT 193
Query: 86 AEQIATLCA-----------TLGEYPSVRYRSDFDRNVELAQLVQQKL-----DAYKADE 129
E+I LCA T+ P +R + +A+ + KL + +
Sbjct: 194 EEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEI-IAEKLGTKLRDFVINTNSSST 252
Query: 130 PTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT 178
T+ R L+ILDR D S H Q +D+ + + VT
Sbjct: 253 STLQGNDSLERGVLIILDRNIDFASXFSHSWIYQCXVFDIFKLSRNTVT 301
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 3 EISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTE 62
E+ G+T+ +H R+P+ + AVY + P E+++ L D + +Y++ ++ F
Sbjct: 71 ELRDMGITLHLLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLRNQ---LYESYYLNFIS 127
Query: 63 C 63
Sbjct: 128 A 128
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 245 DLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNK 289
DL GE + E +K + ++ VP L+D +S ++ R II Y++NK
Sbjct: 34 DLHHGEQLKPEYLKLNPQHTVPTLVDDGLSIWES-RAIITYLVNK 77
>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Recycling Factor, Rrf
pdb|1T1M|C Chain C, Binding Position Of Ribosome Recycling Factor (Rrf) On The
E. Coli 70s Ribosome
Length = 185
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 315 VNLANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDA 363
+N ++LGLN + DGN +L P S T Q +W K+I+E+
Sbjct: 82 INASDLGLNPINDGNVIRLV-FP-----SPTTEQREKWVKKAKEIVEEG 124
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 175 DQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQG 234
D++ ++ I SK +K T +SQ+ +P QKE SK T C+ QG
Sbjct: 123 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSK--TFKRQFTKCLTVIQG 180
Query: 235 Y 235
Y
Sbjct: 181 Y 181
>pdb|3EIN|A Chain A, Delta Class Gst
pdb|3MAK|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd1 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 209
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 245 DLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHA 304
+L GE + E +K + ++ +P L+D + ++ R I +Y++ K G ++ K
Sbjct: 33 NLQAGEHLKPEFLKINPQHTIPTLVDNGFALWES-RAIQVYLVEKYGKTDSLYPKC---- 87
Query: 305 QIQPPEKQAIVN 316
P+K+A++N
Sbjct: 88 ----PKKRAVIN 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,968,300
Number of Sequences: 62578
Number of extensions: 435909
Number of successful extensions: 1185
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 32
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)