Query psy8630
Match_columns 390
No_of_seqs 158 out of 906
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 23:42:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 8.2E-79 2.8E-83 634.3 32.3 381 1-381 47-507 (594)
2 3c98_A Syntaxin-binding protei 100.0 7.2E-76 2.5E-80 616.1 32.5 383 1-383 59-521 (606)
3 1epu_A S-SEC1; parallel beta-s 100.0 1.4E-75 4.9E-80 612.4 31.6 381 1-381 44-509 (591)
4 3puk_A Syntaxin-binding protei 100.0 3.7E-75 1.3E-79 606.5 28.2 373 1-380 51-502 (592)
5 2xhe_A UNC18; exocytosis, exoc 100.0 9.3E-73 3.2E-77 596.0 35.9 376 1-380 44-504 (650)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 1.3E-59 4.6E-64 497.1 19.0 366 1-380 77-594 (671)
7 1y9j_A SEC1 family domain cont 99.7 1.9E-18 6.4E-23 149.2 6.0 67 1-70 69-137 (159)
8 3he4_B Synzip5; heterodimeric 34.9 67 0.0023 20.0 4.1 32 196-227 3-34 (46)
9 3ci9_A Heat shock factor-bindi 27.9 1E+02 0.0036 20.2 4.5 13 196-208 2-14 (48)
10 2lz1_A Nuclear factor erythroi 23.6 89 0.003 23.4 3.9 33 291-323 42-74 (90)
11 3dfg_A Xcrecx, regulatory prot 20.7 1.7E+02 0.006 24.0 5.9 50 275-324 15-65 (162)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=8.2e-79 Score=634.29 Aligned_cols=381 Identities=67% Similarity=1.032 Sum_probs=330.0
Q ss_pred CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL-------- 70 (390)
Q Consensus 1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l-------- 70 (390)
|+||+++||++|+.|+++|+|+|+++|||||+||.+||++|++||+++.+++|++|||||+|.| .++++|
T Consensus 47 ~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~~~~~~~ 126 (594)
T 1dn1_A 47 MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKV 126 (594)
T ss_dssp HHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGT
T ss_pred HHHHhhCCeEEEEecccccCCCCCCceEEEEeCCHHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHhcchHhh
Confidence 5899999999999999999999999999999999999999999999654589999999999998 666655
Q ss_pred ----------------------Ccch---------HHHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCCchHHHHHHHHH
Q psy8630 71 ----------------------LVSI---------LVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQ 119 (390)
Q Consensus 71 ----------------------~p~~---------~~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~~a~~~a~~l~ 119 (390)
.|.. .+.+.+.++++|++|+++|.++|.+|.|||++++..|+++|++++
T Consensus 127 i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~ 206 (594)
T 1dn1_A 127 IKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQ 206 (594)
T ss_dssp EEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHH
T ss_pred hcchheeeeeeEEccCCEEEecCcchHHHHhCCcccccchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHH
Confidence 1211 134578999999999999999999999999998877999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCch------------------------
Q psy8630 120 QKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------ 175 (390)
Q Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~------------------------ 175 (390)
++|+++..+++.++.++..++++|||+||++|++|||+||||||||+||+|||++|
T Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~L~~~D~ 286 (594)
T 1dn1_A 207 DKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 286 (594)
T ss_dssp HHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEECSTTCH
T ss_pred HHHHHhhccCccccCCCCCCCCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCCCCCccceEEecCCCCH
Confidence 99998776555555444567899999999999999999999999999999999987
Q ss_pred ---------------hHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630 176 ---------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLC 240 (390)
Q Consensus 176 ---------------~v~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~l~~~~ 240 (390)
.|.+.+++|.++++..+++..+++||++||++||+++++++++++|++||++|++.+++.|++++
T Consensus 287 ~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~ 366 (594)
T 1dn1_A 287 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLC 366 (594)
T ss_dssp HHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345666766654432346688999999999999999999999999999999999987799999
Q ss_pred HHHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHHHHHHc
Q psy8630 241 RVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANL 320 (390)
Q Consensus 241 ~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~~l~~l 320 (390)
++||++++|.|.+|+.+++.++.|+++|.+++++..|||||+|||+|+.+|++++++.+|++++|++.+++.++.||+++
T Consensus 367 e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~~~~~~~~dkLRL~~Ly~l~~~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~l 446 (594)
T 1dn1_A 367 RVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHL 446 (594)
T ss_dssp HHHHHHHHSBCSSCCBCCCTHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHTCCHHHHHHHHHGGGG
T ss_pred HHHHHHHcCCCcccchhHHHHHHHHHHHhCCCCChHhHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999888888888999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCCCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCCC
Q psy8630 321 GLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVT 381 (390)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~~ 381 (390)
|+...++++.++..+..++.++.+++|++|||+|+++++++++++|+|+++.|||++++++
T Consensus 447 G~~~~~~~~~~k~~~~~~k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~ 507 (594)
T 1dn1_A 447 GVPIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSS 507 (594)
T ss_dssp TCCCBCCCGGGCCCCCCCCCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--
T ss_pred CCccccccccccccccccccCCCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCC
Confidence 9887665443433444566778899999999999999999999999999999999988764
No 2
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=7.2e-76 Score=616.15 Aligned_cols=383 Identities=67% Similarity=1.029 Sum_probs=330.3
Q ss_pred CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL-------- 70 (390)
Q Consensus 1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l-------- 70 (390)
|+||+++||++|+.|+++|+|+|+++|||||+||.+||++|++||+++.+++|++|||||+|.+ .++++|
T Consensus 59 ~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~~~~~~~ 138 (606)
T 3c98_A 59 MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKV 138 (606)
T ss_dssp HHHHTTTTEEEEEETTSCCCCBTTSCEEEEECCCHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHTSGGGGT
T ss_pred HHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhcCcccc
Confidence 6899999999999999999999999999999999999999999999765679999999999998 666665
Q ss_pred ----------------------Ccch---------HHHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCCchHHHHHHHHH
Q psy8630 71 ----------------------LVSI---------LVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQ 119 (390)
Q Consensus 71 ----------------------~p~~---------~~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~~a~~~a~~l~ 119 (390)
.|.. .+.+...++++|++|+++|.++|.+|.|||++++..|+.+|++++
T Consensus 139 i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~~~~~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~ 218 (606)
T 3c98_A 139 IKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQ 218 (606)
T ss_dssp EEEEEECCCCSEECSSSEEECCCTTHHHHHHCGGGTTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHH
T ss_pred cCeEEEEecchhhcCCcEEEecCCchHHHhcCCcccccchHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHH
Confidence 1111 123567899999999999999999999999998888999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCch------------------------
Q psy8630 120 QKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------ 175 (390)
Q Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~------------------------ 175 (390)
++++.+..+++.++.++..++++|||+||++|++|||+||||||||+||+|||++|
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~l~~~D~ 298 (606)
T 3c98_A 219 DKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 298 (606)
T ss_dssp HHHHHHHHHCTTTTCSTTTTSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESSSSEEEEEEECSTTCH
T ss_pred HHHHHHHhcCCcccCCCCCCCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCCCCCccceEeecCCCch
Confidence 99988776666665556677999999999999999999999999999999999998
Q ss_pred ---------------hHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630 176 ---------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLC 240 (390)
Q Consensus 176 ---------------~v~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~l~~~~ 240 (390)
.|.+.+++|.++++...++..+++||++||++||+++++++++++|++|+++|++.++++|++++
T Consensus 299 ~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~ 378 (606)
T 3c98_A 299 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLC 378 (606)
T ss_dssp HHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHhccCHHHHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445666766655444456688999999999999999999999999999999999977899999
Q ss_pred HHHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHHHHHHc
Q psy8630 241 RVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANL 320 (390)
Q Consensus 241 ~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~~l~~l 320 (390)
++||+|++|.+.+|+.+++.++.+.++|.+++++..|||||+|||+++++|++++++.++++..|++..+..++.||..+
T Consensus 379 e~EQ~l~~~~d~~~~~~~~~~~~i~~ll~~~~~~~~dkLRL~lLy~l~~~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~l 458 (606)
T 3c98_A 379 RVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHL 458 (606)
T ss_dssp HHHHHHHHSBCTTSCBCSCTHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHTCCHHHHHHHHHGGGG
T ss_pred HHHHHHHhCCCcchhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCCCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCCCCC
Q psy8630 321 GLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSS 383 (390)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~~~~ 383 (390)
|+...+++.........++.+..+..|++|||+|+++++++++++|+|+++.||++.+.++.+
T Consensus 459 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~ 521 (606)
T 3c98_A 459 GVPIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSAS 521 (606)
T ss_dssp TCCCBCCCTTTCCCCCCCCCCCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC----
T ss_pred CCccccccccccccchhhccCCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccc
Confidence 988766543333333444556678899999999999999999999999999999998766544
No 3
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=1.4e-75 Score=612.39 Aligned_cols=381 Identities=67% Similarity=1.029 Sum_probs=326.4
Q ss_pred CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL-------- 70 (390)
Q Consensus 1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l-------- 70 (390)
|+||++|||++|+.|+++|+|+|+++|||||+||.+||++|++||++..+++|++|||||+|.+ .+|+++
T Consensus 44 ~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~ 123 (591)
T 1epu_A 44 MHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARF 123 (591)
T ss_dssp HHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCHHHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHSTTGGG
T ss_pred HHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCHHHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhCchHhh
Confidence 5899999999999999999999999999999999999999999999633489999999999998 666665
Q ss_pred ----------------------Ccc----hH-----HHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCCchHHHHHHHHH
Q psy8630 71 ----------------------LVS----IL-----VLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQ 119 (390)
Q Consensus 71 ----------------------~p~----~~-----~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~~a~~~a~~l~ 119 (390)
.|. ++ ..+.+.++++|++|+++|.++|.+|.|||+++++.|+++|+.++
T Consensus 124 i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~ 203 (591)
T 1epu_A 124 IKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQ 203 (591)
T ss_dssp EEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGGSTTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHH
T ss_pred hceeeEeccceEecCCCEEEeCCccHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHH
Confidence 111 11 24568899999999999999999999999998778999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCch------------------------
Q psy8630 120 QKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------ 175 (390)
Q Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~------------------------ 175 (390)
++|+++..+.+.++.++..++++|||+||++|++|||+||||||||+||+|||++|
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~~~~~~~~k~~~L~~~D~ 283 (591)
T 1epu_A 204 QKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDD 283 (591)
T ss_dssp HHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-----------CEECCGGGS
T ss_pred HHHHHHHhcCCCCCCCCCCCCceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEecCCCCccceEEeCCCCCh
Confidence 99998766555554434457899999999999999999999999999999999988
Q ss_pred ---------------hHHHHHHHHHHhcCCCC-CCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630 176 ---------------QVTKNLKKFIDSKRMPQ-GDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKL 239 (390)
Q Consensus 176 ---------------~v~~~~~~~~~~~~~~~-~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~l~~~ 239 (390)
.|.+.+++|.++++..+ ++..+++||++||++||+++++++++++|++||++|++.++++|+++
T Consensus 284 ~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~~l~~~ 363 (591)
T 1epu_A 284 LWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKL 363 (591)
T ss_dssp SHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345566666654333 24568999999999999999999999999999999999998899999
Q ss_pred HHHHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHHHHHH
Q psy8630 240 CRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLAN 319 (390)
Q Consensus 240 ~~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~~l~~ 319 (390)
+++||++++|.|.+|+++++.++.|+++|.+++.+..|||||+|||+++++|+++++++++++.+|++.+++.++.||++
T Consensus 364 ~~~EQ~l~~g~d~~g~~~k~~~~~i~~~l~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~ 443 (591)
T 1epu_A 364 CKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQN 443 (591)
T ss_dssp HHHHHHHHHSBCTTSCBCCCCHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTCBCHHHHHHHHHHTTCCHHHHHHHHHGGG
T ss_pred HHHHHHHhcCCCccccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999888888889999999888999999999999999999999999999999999998899999999999
Q ss_pred cCCcccccCCCCCCCCC----CCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCCC
Q psy8630 320 LGLNSVIDGNRKKLYQI----PRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVT 381 (390)
Q Consensus 320 lg~~~~~~~~~~~~~~~----~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~~ 381 (390)
+|+...++++.++.++. .++.++.+..|++|||+|++++++|++++|+|++..||++.++++
T Consensus 444 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~ 509 (591)
T 1epu_A 444 LGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGP 509 (591)
T ss_dssp GTCCCBSCTTSCCCCCTTSGGGSCCCCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-
T ss_pred cCCccccCCccccccccccccccccCCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCC
Confidence 99887654322333222 234456778999999999999999999999999999999988654
No 4
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=3.7e-75 Score=606.52 Aligned_cols=373 Identities=46% Similarity=0.754 Sum_probs=312.0
Q ss_pred CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL-------- 70 (390)
Q Consensus 1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l-------- 70 (390)
|+||++|||++|+.|+++|+|+|+++|||||+||.+||++|++||+++..++|++|||||+|.| .+++++
T Consensus 51 ~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L~~~~~~~I 130 (592)
T 3puk_A 51 MTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKASCSKSI 130 (592)
T ss_dssp TTGGGGGTEEEEEESSSCCCCBTTSCEEEEECSCHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHHHHSCCSSE
T ss_pred HHHHHhCCcEEEeeccCccCCCCCCcEEEEEeCCHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHHHhhHHhhc
Confidence 6899999999999999999999999999999999999999999999644469999999999998 555544
Q ss_pred ---------------------Ccch---------H--HHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCCc-hHHHHHHH
Q psy8630 71 ---------------------LVSI---------L--VLRMANMERIAEQIATLCATLGEYPSVRYRSDFD-RNVELAQL 117 (390)
Q Consensus 71 ---------------------~p~~---------~--~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~-~a~~~a~~ 117 (390)
.|.. . +++.+.++++|++|+++|.++|.+|.|||++++. .|+++|++
T Consensus 131 ~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~ 210 (592)
T 3puk_A 131 RRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQL 210 (592)
T ss_dssp EEEEECCCCEEEEETTEEEECCTTHHHHHSCCSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHH
T ss_pred CEEEEEeeeeEeccCCEEEecCCchHHHHcCCcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHH
Confidence 1211 1 4568899999999999999999999999998753 47799999
Q ss_pred HHHHHHH-HhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCchhHH------------------
Q psy8630 118 VQQKLDA-YKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT------------------ 178 (390)
Q Consensus 118 l~~~l~~-~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~~v~------------------ 178 (390)
++++|++ +..+.+.++. ..++++|||+||++|++|||+||||||||+||+|||++|.|.
T Consensus 211 l~~~l~~~~~~~~~~~~~--~~~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~~g~~k~~~L~~~D~~ 288 (592)
T 3puk_A 211 VEKKLEDYYKIDEKGLIK--GKTQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKTDGKEKEAVLEEDDDL 288 (592)
T ss_dssp HHHHHHHSSSSCSSCSCC--SCCSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCSSSSCCEEECSTTSSS
T ss_pred HHHHHHHHHhccCCCcCC--CCCCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecCCCceeEEecCCCCHH
Confidence 9999987 4333333332 256899999999999999999999999999999999998221
Q ss_pred -----------------HHHHHHHHhcCCCCCCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630 179 -----------------KNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCR 241 (390)
Q Consensus 179 -----------------~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~l~~~~~ 241 (390)
+.+++|.++++. ..+..+++||++||++||+++++++++++|++||++|++.++++|+++++
T Consensus 289 ~~~~r~~~f~~v~~~l~~~~~~~~~~~~~-~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~e 367 (592)
T 3puk_A 289 WVRVRHRHIAVVLEEIPKLMKEISSTKKA-TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKLNIEKLCK 367 (592)
T ss_dssp TTTTTTSBHHHHHTTSCSCSTTTTTCC--------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHhhc-ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112211111 12356889999999999999999999999999999999999878999999
Q ss_pred HHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHHHHHHcC
Q psy8630 242 VEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLG 321 (390)
Q Consensus 242 ~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~~l~~lg 321 (390)
+||++++|.+.+|+++++.++.|.++|.+++++..|||||+|||+|+++|++++++++|++++|++. +..+|.||..+|
T Consensus 368 ~EQ~l~~g~d~~~~~~k~~~~~i~~~L~~~~~~~~dkLRL~lLy~L~~~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg 446 (592)
T 3puk_A 368 TEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEENLDRLIHNVKIED-DSDMIRNWSHLG 446 (592)
T ss_dssp HHHHHHSSSCTTCCSCSCCHHHHTTTTTSCSCCHHHHHHHHHHHHHHSCBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGT
T ss_pred HHHHHHhCCCccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhC
Confidence 9999999999888888888889999998889999999999999999999999999999999999987 899999999999
Q ss_pred CcccccCCCCCCCCCCCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCC
Q psy8630 322 LNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHV 380 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~ 380 (390)
+...+++. ..+..++.++.+++|++|||+|+++++++++++|+|+++.|||+++++
T Consensus 447 ~~~~~~~~---~~~~~rk~~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~ 502 (592)
T 3puk_A 447 VPIVPPSQ---QAKPLRKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCP 502 (592)
T ss_dssp CCSSSSBS---SCCCCCCCCCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC-----
T ss_pred CccccCcc---ccCcccccCCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCC
Confidence 88765532 223355677789999999999999999999999999999999998865
No 5
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=9.3e-73 Score=596.00 Aligned_cols=376 Identities=36% Similarity=0.586 Sum_probs=321.5
Q ss_pred CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL-------- 70 (390)
Q Consensus 1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l-------- 70 (390)
|+||++|||++|+.|+++|+|+|+++|||||+||.+||++|++||+.. .++|++|||||+|.+ .+|+++
T Consensus 44 ~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~~ni~~i~~d~~~~-~~~y~~~~i~F~~~~~~~~le~la~~~~~~~ 122 (650)
T 2xhe_A 44 MSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADR-TPTYEAAHLFFLSPVPDALMAKLASAKAVKY 122 (650)
T ss_dssp HHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCHHHHHHHHHHHHSS-SCSBSCEEEEESSCCCHHHHHHHHHSGGGGG
T ss_pred HHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHHhhc-CCCcceEEEEeCCCCCHHHHHHHHhcchhhh
Confidence 579999999999999999999999999999999999999999999953 279999999999998 677665
Q ss_pred ----------------------Ccc----hH--HHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCC-chHHHHHHHHHHH
Q psy8630 71 ----------------------LVS----IL--VLRMANMERIAEQIATLCATLGEYPSVRYRSDF-DRNVELAQLVQQK 121 (390)
Q Consensus 71 ----------------------~p~----~~--~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~-~~a~~~a~~l~~~ 121 (390)
.|. ++ ..+.+.++++|++|+++|.++|.+|.|||++++ ..|+++|++++++
T Consensus 123 i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~ 202 (650)
T 2xhe_A 123 VKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKE 202 (650)
T ss_dssp EEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTGGGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCEEEEEccceEeccCCEEEeCCchHHHHhcCCccchHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHH
Confidence 111 11 245678999999999999999999999999986 6899999999998
Q ss_pred HHHHhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCch--------------------------
Q psy8630 122 LDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND-------------------------- 175 (390)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~-------------------------- 175 (390)
|++ ..+.+.++.++...+++|||+||++|++|||+||||||||+||+|||++|
T Consensus 203 l~~-~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~~~~~~~k~~~L~~~D~~ 281 (650)
T 2xhe_A 203 IDM-SVSQGLINAREGKLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQQRQVVLGEDDDI 281 (650)
T ss_dssp HHH-HHTTTSCCCCCCSSCCEEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCSSCCSEEEEEECCTTCTT
T ss_pred HHh-hccCCcccCCCCCCCCEEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCCCCCccceEEeCCCCCHH
Confidence 886 22333222234556899999999999999999999999999999999987
Q ss_pred --------------hHHHHHHHHHHhcCCCC------CCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630 176 --------------QVTKNLKKFIDSKRMPQ------GDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGY 235 (390)
Q Consensus 176 --------------~v~~~~~~~~~~~~~~~------~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~ 235 (390)
.|.+.+++|.++++..+ ++..+++||++||++||+++++++++++|++||++|++.++++
T Consensus 282 ~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~~ 361 (650)
T 2xhe_A 282 WLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSST 361 (650)
T ss_dssp HHHHTTSBHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345566665543221 1456899999999999999999999999999999999999779
Q ss_pred HHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHH
Q psy8630 236 VDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIV 315 (390)
Q Consensus 236 l~~~~~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~ 315 (390)
|.+++++||++++|.|.+|+++++.+++|+++|.+++.+..|||||+|||+++++|+++++++++++.+|++.+++.+|.
T Consensus 362 l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~ll~~~G~~~~~~~~i~ 441 (650)
T 2xhe_A 362 IDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELNNLLDNANIATPSRSAIY 441 (650)
T ss_dssp HHHHHHHHHHHHHSBCSSCCBCCCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHHHHHHhcCCcccccchhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999998888888999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccCCCCCCCCCCCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCC
Q psy8630 316 NLANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHV 380 (390)
Q Consensus 316 ~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~ 380 (390)
||+++|+...+.++.++.+...++.+ +..|+||||+|++++++|++++|+|++..||++.+++
T Consensus 442 nL~~lgl~~~~~~~~~~~~~~~rk~~--~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~ 504 (650)
T 2xhe_A 442 NLEMLGATVVADRRGRKPKTMKRIER--DMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGP 504 (650)
T ss_dssp GGGGGTCCCBGGGCCCCCCCCCCCCC--CCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGG
T ss_pred HHHHhCCccccccccccccccccccc--CCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCC
Confidence 99999998765432233333334333 2389999999999999999999999999999998754
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=1.3e-59 Score=497.08 Aligned_cols=366 Identities=17% Similarity=0.297 Sum_probs=267.4
Q ss_pred CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL-------- 70 (390)
Q Consensus 1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l-------- 70 (390)
|+||++|||++|+.|+++|+|+|+++|||||+||.+||++|++||+ +++|++|||||+|.+ .+|+++
T Consensus 77 ~s~L~~~gVtlv~~l~~~r~~~~~~~aIYfv~Pt~~ni~~i~~d~~---~~~Y~~~~i~F~~~~~~~lle~la~~~~~~~ 153 (671)
T 1mqs_A 77 VNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLK---SDKYSEFYINFTSSLPRNLLEDLAQQVSITG 153 (671)
T ss_dssp HHHHHHTTEEEEEETTSCCCCEEEEEEEEEECSCHHHHHHHHHHHH---HTCEEEEEEEESSCCCHHHHHHHHHHHHTST
T ss_pred HHHHHhCCCeEEeeccCCCCCCCCceEEEEeCCCHHHHHHHHHHhh---hcccceEEEEecCCCCHHHHHHHHhhhhhcc
Confidence 5799999999999999999999999999999999999999999999 479999999999987 666553
Q ss_pred --------------------------CcchH----H---Hh---HHHHHHHHHHHHHHHHHhCCCCeEEecCCCchHHHH
Q psy8630 71 --------------------------LVSIL----V---LR---MANMERIAEQIATLCATLGEYPSVRYRSDFDRNVEL 114 (390)
Q Consensus 71 --------------------------~p~~~----~---~~---~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~~a~~~ 114 (390)
.|..+ . ++ ...++++|++|+++|.++|.+|.|||.+|+ .|+.+
T Consensus 154 ~~~~i~~v~e~~ldfiple~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-~a~~v 232 (671)
T 1mqs_A 154 KSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-PAEII 232 (671)
T ss_dssp TGGGEEEEEECCCCSEECSTTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-HHHHH
T ss_pred hhhhcCEEEEEccceeeccCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-hHHHH
Confidence 11111 1 02 278999999999999999999999999885 79999
Q ss_pred HHHHHHHHHHHhccCC--CCCC---CCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCchh-------------
Q psy8630 115 AQLVQQKLDAYKADEP--TMGE---GVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQ------------- 176 (390)
Q Consensus 115 a~~l~~~l~~~~~~~~--~~~~---~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~~------------- 176 (390)
|++|.++++++..... .|++ ++...+++|||+||++|++|||+||||||||+||+|||++|.
T Consensus 233 a~~L~~~l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~ 312 (671)
T 1mqs_A 233 AEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTD 312 (671)
T ss_dssp HHHHHHHHHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC--------
T ss_pred HHHHHHHHHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCcccc
Confidence 9999999987543221 2322 133568999999999999999999999999999999998761
Q ss_pred -----------------------------------HHHHHHHHHHhcC---C-CC---------CCccCHHHHHHHHHhC
Q psy8630 177 -----------------------------------VTKNLKKFIDSKR---M-PQ---------GDKQTMRDLSQMIKKM 208 (390)
Q Consensus 177 -----------------------------------v~~~~~~~~~~~~---~-~~---------~~~~s~~e~~~~v~~l 208 (390)
|.+.+++|.++.+ . .. ....+++||++||++|
T Consensus 313 ~~~~~~~~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~L 392 (671)
T 1mqs_A 313 NTTAKPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKL 392 (671)
T ss_dssp -------CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSC
T ss_pred ccccccccceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHh
Confidence 1123444443321 0 00 1235799999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHhhcCC-CCchhHHHHHHHHH
Q psy8630 209 PQYQKELSKYSTHLHLAEDCMKAYQG-YVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQN-VSNYDKMRIIILYI 286 (390)
Q Consensus 209 p~~~~~~~~l~~H~~i~~~i~~~~~~-~l~~~~~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~-~~~~dkLRLl~L~~ 286 (390)
|+++++++++++|++||++|++.+++ +|++++++||+++ | + ...++|+++|.+++ .+..|||||+|||+
T Consensus 393 P~~~~~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~----~----~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~ 463 (671)
T 1mqs_A 393 PELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-S----T----KTRSRFLDILKDGKTNNLEDKLRSFIVLY 463 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-S----H----HHHHHHHHHTTSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-c----C----chHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 8999999999997 2 1 12468899997654 49999999999999
Q ss_pred HHhC-CCCHHH---HHHHHHHcCCCchHHHHHHHHHHcCCcc---ccc-C---C--CC----CCCCC--CC---c-CC-C
Q psy8630 287 LNKN-GISEDN---LNKLITHAQIQPPEKQAIVNLANLGLNS---VID-G---N--RK----KLYQI--PR---K-ER-I 342 (390)
Q Consensus 287 l~~~-g~~~~~---~~~ll~~~g~~~~~~~~l~~l~~lg~~~---~~~-~---~--~~----~~~~~--~~---~-~~-~ 342 (390)
++++ |+++++ ++++++.+|++...+..+.++..++... ... . . .. ..+.. .+ + .+ +
T Consensus 464 l~~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~r~~~~~~~~g 543 (671)
T 1mqs_A 464 LTSTTGLPKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGG 543 (671)
T ss_dssp HHCSSCCCHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------CHHHHHTTTSS
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHHHHHHHHhccc
Confidence 9998 999877 5566778898766666666665442111 000 0 0 00 00100 00 0 00 0
Q ss_pred -------CccccccccccchHHHHHHHHHhC-----C--CCCCCCCCccCCC
Q psy8630 343 -------SECTYQMSRWTPIVKDIMEDAIED-----K--LDQKHFPFLAGHV 380 (390)
Q Consensus 343 -------~~~~y~~s~y~P~l~~ii~~~~~~-----~--L~~~~yP~v~~~~ 380 (390)
..+.|. ..+.|.+.++++++.+| + |++++||++.++.
T Consensus 544 ~~~~~~~v~n~~P-~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~ 594 (671)
T 1mqs_A 544 VGSLISGIKKLLP-EKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKI 594 (671)
T ss_dssp CSSSHHHHHHTCC-CCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTS
T ss_pred hhhHHHhHHhhCC-CcccchHHHHHHHHHhccccccccCCCccCceeeCCCC
Confidence 112221 35677899999999999 4 7888999998653
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.73 E-value=1.9e-18 Score=149.18 Aligned_cols=67 Identities=22% Similarity=0.486 Sum_probs=63.4
Q ss_pred CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh
Q psy8630 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL 70 (390)
Q Consensus 1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l 70 (390)
|+||+++||++|+.|+++|+|+|+++|||||+||.+||++|++||+ +++|++|||||++.+ ++|++|
T Consensus 69 ~sdLl~~gVtlve~i~~~R~p~~~~~aIYfv~Pt~enI~~i~~D~~---~~~Y~~y~i~Ft~~i~~~lle~L 137 (159)
T 1y9j_A 69 VKELRDMGITLHLLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLR---NQLYESYYLNFISAISRSKLEDI 137 (159)
T ss_dssp HHHHHHHTEEEEEETTSCCCCBTTSCCEEEECCCHHHHHHHHHHHH---HTCBSEEEEEESSCCCHHHHHHH
T ss_pred HHHHHhCCcEEEeeccCCCCCCCCCCEEEEecCCHHHHHHHHHHhh---hcccCeEEEEEcCCCCHHHHHHH
Confidence 5899999999999999999999999999999999999999999998 479999999999999 777766
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.90 E-value=67 Score=19.96 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q psy8630 196 QTMRDLSQMIKKMPQYQKELSKYSTHLHLAED 227 (390)
Q Consensus 196 ~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~ 227 (390)
.+.++++.++..|.+-..+.+++..|+..+.+
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 46789999998888888888888888776544
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=27.88 E-value=1e+02 Score=20.25 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=9.0
Q ss_pred cCHHHHHHHHHhC
Q psy8630 196 QTMRDLSQMIKKM 208 (390)
Q Consensus 196 ~s~~e~~~~v~~l 208 (390)
.+..|+..+|.+|
T Consensus 2 ~~~~dLt~~vq~L 14 (48)
T 3ci9_A 2 KTVQDLTSVVQTL 14 (48)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3567888888654
No 10
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.61 E-value=89 Score=23.37 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHHcCCc
Q psy8630 291 GISEDNLNKLITHAQIQPPEKQAIVNLANLGLN 323 (390)
Q Consensus 291 g~~~~~~~~ll~~~g~~~~~~~~l~~l~~lg~~ 323 (390)
.++.+++++++..++++.+++.++.....-|-.
T Consensus 42 nLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKN 74 (90)
T 2lz1_A 42 NLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKN 74 (90)
T ss_dssp HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCS
T ss_pred HCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhh
Confidence 366788999999999999999999888765533
No 11
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=20.74 E-value=1.7e+02 Score=24.00 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=38.8
Q ss_pred chhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHH-HHHHHHHHcCCcc
Q psy8630 275 NYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEK-QAIVNLANLGLNS 324 (390)
Q Consensus 275 ~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~-~~l~~l~~lg~~~ 324 (390)
+...++-.+|..|++...+..++.+-|...|++.+.+ .+|..|...|...
T Consensus 15 ~~~~a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ld 65 (162)
T 3dfg_A 15 KEQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQD 65 (162)
T ss_dssp --CCHHHHHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Confidence 3457788888899888888889888888889987666 4668898888774
Done!