RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8630
(390 letters)
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 317 bits (814), Expect = e-104
Identities = 256/470 (54%), Positives = 302/470 (64%), Gaps = 80/470 (17%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
M +I EG+TIVEDI+K REPLPSLEAVYLITP EKSV +L++DF Y+AAHV+F
Sbjct: 44 MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFF 103
Query: 61 T-----------------------ECFY------------------YFSFLLVSILVLRM 79
T + SF ++
Sbjct: 104 TDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKN 163
Query: 80 ANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
+ER+AEQIATLCATL EYP+VRYR ++ N LAQL+Q KLDAYKAD+PTMGEG +KA
Sbjct: 164 PILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKA 223
Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT--------------------- 178
RSQLLILDRGFD SP+LHELT QAM+YDLL IEND
Sbjct: 224 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 283
Query: 179 ------------------KNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
++LK F SKRM G+K TMRDLSQM+KKMPQYQKELSKYST
Sbjct: 284 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYST 343
Query: 221 HLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR 280
HLHLAEDCMK YQG VDKLCRVEQDLA G DAEGE+IKD MR IVPILLD NVS YDK+R
Sbjct: 344 HLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 403
Query: 281 IIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKE 340
II+LYI KNGI+E+NLNKLI HAQI P + + I N+A+LG+ V D ++ + RKE
Sbjct: 404 IILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE 463
Query: 341 RISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPSR 390
RISE TYQ+SRWTPI+KDIMED IEDKLD KH+P+++ ++S
Sbjct: 464 RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVS 513
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 311 bits (798), Expect = e-102
Identities = 254/475 (53%), Positives = 300/475 (63%), Gaps = 85/475 (17%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
MHEI +EG+T+VEDI++ REPLP LEAVYLITP E+SVK LM DF + Y+ AH++F
Sbjct: 43 MHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFF 102
Query: 61 T-----------------------ECFY------------------YFSFLLVSILVLRM 79
T + + + S +
Sbjct: 103 TEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGI 162
Query: 80 ANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
N ER AEQIATLCATLGEYPSVRYRSDFD N AQLVQQKLDAY+AD+PTMGEG +K
Sbjct: 163 PNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKD 222
Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT--------------------- 178
RSQLLILDRGFD +SPLLHELT QAMAYDLL IEND
Sbjct: 223 RSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDD 282
Query: 179 ------------------KNLKKFIDSKRMPQ-GDKQTMRDLSQMIKKMPQYQKELSKYS 219
K LK+F D KRM DK ++DLSQM+KKMPQYQKELSKYS
Sbjct: 283 LWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYS 342
Query: 220 THLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKM 279
THLHLAEDCMK YQ +VDKLC+VEQDLA G DA+GE+I+DHMRNIVPILLDQ +S YDK+
Sbjct: 343 THLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKI 402
Query: 280 RIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQI--- 336
RII+LYI++K GISE+NL KL+ HA I EK I ++ NLG+ + DG R+K+ Q
Sbjct: 403 RIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHT 462
Query: 337 -PRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPSR 390
RKER ++ TYQMSRWTP +KDIME A+EDKLD +H+PFL G P
Sbjct: 463 HNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVS 517
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 177 bits (451), Expect = 1e-50
Identities = 70/541 (12%), Positives = 159/541 (29%), Gaps = 164/541 (30%)
Query: 1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
++++ G+T+ I + R PLP + A+Y ++P ++++ ++ND Y ++ F
Sbjct: 63 VNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLK---SDKYSEFYINF 119
Query: 61 TECF--------------------------YYFSFLLVS--ILVLRMAN----------- 81
T Y F++ + L ++N
Sbjct: 120 TSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTT 179
Query: 82 -------MERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKL-----DAYKADE 129
IA+ + T+ P +R + +A+ + KL + +
Sbjct: 180 EEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEI-IAEKLGTKLRDFVINTNSSST 238
Query: 130 PTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT----------- 178
T+ R L+ILDR D S H Q M +D+ + + VT
Sbjct: 239 STLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTD 298
Query: 179 -------------------------------------KNLKKFIDSKRMPQGDKQTMRDL 201
L + + K + ++
Sbjct: 299 NTTAKPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAEIT-RKTGVTNI 357
Query: 202 SQMIKKMPQYQKELSK--------------YSTHLHLAEDCMKAYQG-YVDKLCRVEQDL 246
S + ++ + TH+++ + + +D VEQD
Sbjct: 358 SDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDP 417
Query: 247 ATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR-IIILYILNKNGISEDNLNKLITHAQ 305
+ K R + + + + DK+R I+LY+ + G+ +D + + + +
Sbjct: 418 GST--------KTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFK 469
Query: 306 IQPPEKQAIVNLANLGL------------------------------------NSVIDGN 329
+ A+ + L + G
Sbjct: 470 ENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGG 529
Query: 330 RKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPS 389
L +K + T ++ + D + + ++ + ++ +T +
Sbjct: 530 VGSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKP 589
Query: 390 R 390
+
Sbjct: 590 K 590
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 141
Score = 27.7 bits (61), Expect = 1.4
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 188 KRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLA 247
K K + D SQ K Q+ K + ++ + G + +V+
Sbjct: 63 KAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFG-TENAMIEWHPGPDSAVVKVDGGEM 121
Query: 248 TGEDAEGERIKDHMRNIVP 266
E A G+ K + N++P
Sbjct: 122 MVETAFGDEFKADVINLIP 140
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 110
Score = 25.3 bits (55), Expect = 7.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 168 DLLNIENDQVTKNLKKFIDSK 188
DL+N+E DQ+ K +K +++
Sbjct: 86 DLVNVEVDQIGKYTEKLVEAH 106
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 26.1 bits (57), Expect = 7.9
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 267 ILLDQNVSNYDKMRIIILYILN--------KNGISEDNLNKLITHAQIQPPEKQAIVNLA 318
IL D N + + I + +G + ++ + I AIV+
Sbjct: 5 ILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPG 64
Query: 319 N 319
N
Sbjct: 65 N 65
>d2dexx1 b.2.9.1 (X:113-293) Peptidylarginine deiminase Pad4, middle
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 25.6 bits (56), Expect = 8.6
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 169 LLNIENDQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDC 228
L+N + D +D + D + ++D+S M + + ++ LH+A
Sbjct: 39 LVNCDRD---NLESSAMDCEDDEVLDSEDLQDMSLMTLSTKTPKDFFTNHTLVLHVARSE 95
Query: 229 MK 230
M
Sbjct: 96 MD 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,395,736
Number of extensions: 64233
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 24
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)