BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8633
         (327 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of
           Human Dna Polymerase Delta
 pdb|3E0J|C Chain C, X-Ray Structure Of The Complex Of Regulatory Subunits Of
           Human Dna Polymerase Delta
 pdb|3E0J|E Chain E, X-Ray Structure Of The Complex Of Regulatory Subunits Of
           Human Dna Polymerase Delta
 pdb|3E0J|G Chain G, X-Ray Structure Of The Complex Of Regulatory Subunits Of
           Human Dna Polymerase Delta
          Length = 476

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 118/171 (69%)

Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
           +S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST   VTNPY   ++G   +GTSGQ
Sbjct: 295 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 354

Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
            VSDI ++S++ + L+ILE+TLR  H++PTAPDTL CYPFY  DP I   CP VYF GN 
Sbjct: 355 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNT 414

Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVEDLTEE 326
             F +K I   +D+ V L++VPDF +++T  ++NL +L C  +       E
Sbjct: 415 PSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAE 465



 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 2/108 (1%)

Query: 28  GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
           G  V V KL +L     E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   D
Sbjct: 81  GSGVGVKKLCELQPE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 138

Query: 88  ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
           EL+LEDELQRI L G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct: 139 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 186



 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 1   MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVI 49
            I   CP VYF GN   F +K I   + ++V ++ + D + T T  C++
Sbjct: 400 FIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQT-ACLV 447


>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
           Angstroms Resolution
 pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
           Angstroms Resolution
 pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
           Functional Derivatives Of Ascorbate Oxidase From
           Zucchini: Reduced-, Peroxide-, And Azide-Forms
 pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
           Functional Derivatives Of Ascorbate Oxidase From
           Zucchini: Reduced-, Peroxide-, And Azide-Forms
 pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
           Functional Derivatives Of Ascorbate Oxidase From
           Zucchini: Reduced-, Peroxide-, And Azide-forms
 pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
           Functional Derivatives Of Ascorbate Oxidase From
           Zucchini: Reduced-, Peroxide-, And Azide-forms
 pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
           Functional Derivatives Of Ascorbate Oxidase From
           Zucchini: Reduced-, Peroxide-, And Azide-Forms
 pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
           Functional Derivatives Of Ascorbate Oxidase From
           Zucchini: Reduced-, Peroxide-, And Azide-Forms
          Length = 552

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 18  FETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKP-----NILKEISEELK 72
           F T  I+I  G+S SVL  +D N ++    V +GT  +H    P     N L     +L 
Sbjct: 249 FYTSDIDIYSGESYSVLITTDQNPSEN-YWVSVGTRARHPNTPPGLTLLNYLPNSVSKLP 307

Query: 73  LVPQPQ 78
             P PQ
Sbjct: 308 TSPPPQ 313


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,251,325
Number of Sequences: 62578
Number of extensions: 448429
Number of successful extensions: 1107
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 7
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)