BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8633
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35654|DPOD2_MOUSE DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=2
Length = 469
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 119/172 (69%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVEDLTEER 327
F +K I +D+ V L++VPDF S++T ++NL +L C + E+
Sbjct: 408 PSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPISFAGFGAEQ 459
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+EISEE LVPQP + ++ D
Sbjct: 74 GSRVEVKKLCELQPG--EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +G+F+V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFA 179
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVI 49
I CP VYF GN F +K I + + V ++ + D + T T C++
Sbjct: 393 FIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQT-ACLV 440
>sp|P49005|DPOD2_HUMAN DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1
Length = 469
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 118/171 (69%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVEDLTEE 326
F +K I +D+ V L++VPDF +++T ++NL +L C + E
Sbjct: 408 PSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAE 458
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GSGVGVKKLCELQPE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVI 49
I CP VYF GN F +K I + ++V ++ + D + T T C++
Sbjct: 393 FIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQT-ACLV 440
>sp|Q6AXY4|DPOD2_RAT DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1
SV=1
Length = 469
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 118/172 (68%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ Y+T VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFAECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVEDLTEER 327
F +K I +D+ V L++VPDF S++T ++NL L C + E+
Sbjct: 408 PSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQPISFAGFGAEQ 459
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+EISEE L+PQP + ++ D
Sbjct: 74 GSQVEVKKLCELQPG--EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +GKF+V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFA 179
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVI 49
I CP VYF GN F +K I + ++V ++ + D + T T C++
Sbjct: 393 FIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQT-ACLV 440
>sp|P49004|DPOD2_BOVIN DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2
Length = 469
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 119/171 (69%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TL+ H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVEDLTEE 326
F +K I+ +D+ V L++VPDF +++T ++NL +L C + E
Sbjct: 408 PSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPISFSGFGAE 458
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Query: 18 FETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQP 77
F + G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP
Sbjct: 64 FLVSRAQQRWGSGVLVKKLCELQPG--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQP 121
Query: 78 QHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
+ ++ DELILEDELQRI L G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 122 PRSKYIHPDDELILEDELQRIKLEGTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFA 179
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVI 49
I CP VYF GN F +K I+ + ++V ++ + D + T T C++
Sbjct: 393 FIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQT-ACLV 440
>sp|O93610|DPOD2_XENLA DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1
Length = 463
Score = 194 bits (493), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 117/161 (72%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
S+ VD+MPG FDP N LPQQPLH C+FP+++ YST VTNPY E++G +GTSGQ
Sbjct: 288 GSVSVDVMPGAFDPTNYILPQQPLHRCMFPQSALYSTLQLVTNPYEAEIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
+ DI K+S++ + LDILE+TL+ GH+ PTAPDTL CYPFY +DP I+++CP VYF G+
Sbjct: 348 NIGDIYKYSSMQDYLDILEWTLQVGHLCPTAPDTLGCYPFYKSDPFILQNCPHVYFCGSA 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECH 316
KF K + + + V L++VP+F S++T ++NL TL+C
Sbjct: 408 PKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTLQCQ 448
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 86/134 (64%), Gaps = 5/134 (3%)
Query: 21 KTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHT 80
K+ + G ++V KL +L E+C +IGTLFK +L+P+IL+EISEE L+PQP
Sbjct: 67 KSAKQRWGDDIAVRKLCELQ--GGEKCCVIGTLFKSMELQPSILREISEEHNLLPQPARQ 124
Query: 81 HFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYAT-PVF 139
++SDSDELILEDELQRI L G D+ VTG V+A+ G GKF V D C + PV
Sbjct: 125 KYISDSDELILEDELQRIKLEGATDVQQLVTGAVLAVLGAEEDAGKFVVEDFCLTSLPVQ 184
Query: 140 NPRTTLSNNENKYV 153
+P LS E+++V
Sbjct: 185 SPLPRLS--EDRFV 196
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTL 53
I+++CP VYF G+ KF K + +G+ V +L + + T T V + TL
Sbjct: 393 FILQNCPHVYFCGSAPKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTL 445
>sp|Q9LRE5|DPOD2_ORYSJ DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica
GN=POLD2 PE=2 SV=1
Length = 429
Score = 182 bits (461), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 114/163 (69%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPG DPAN +LPQQPLH CLF A+ Y+TF +NP+ FE++ +GTSGQ
Sbjct: 259 ASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSSCSNPHQFELDSVRFIGTSGQ 318
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
+ D+ K+S+ + L+ +E TLR H+APTAP++L CYP+ D DP ++ESCP VYF GNQ
Sbjct: 319 NIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTDKDPFLVESCPHVYFVGNQ 378
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
K+ET+ ++ + + VRLI +P F S +LNL LEC +L
Sbjct: 379 DKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLECSTL 421
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 39 LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRI 98
L + ++C+I+GTL+KH +LKP+IL E S+E +P + +F+ D LILEDE R+
Sbjct: 59 LGLEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRV 118
Query: 99 PLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFNPRTTL-SNNENKYV 153
L G I VTGVV+A+ G G F V D+ A P+ TL S NE+KYV
Sbjct: 119 TLAGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAG--IPPQITLPSINEDKYV 172
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIE-IEKGK 29
++ESCP VYF GNQ K+ET+ ++ +EK K
Sbjct: 364 FLVESCPHVYFVGNQDKYETQLLQGLEKQK 393
>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2
PE=2 SV=2
Length = 440
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 111/163 (68%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+ + VD+MPG DPAN LPQQPL+ CLFP +S Y+TF TNP+ F+++ +GTSGQ
Sbjct: 269 AGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQ 328
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
+ D+ K+S + LD +E TLR H+APTAP+TL CYPF D DP +IE+CP VYF GNQ
Sbjct: 329 NIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQ 388
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
K++ + I+ + + VRLI +P F + +NL LECH+L
Sbjct: 389 DKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECHTL 431
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 21 KTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHT 80
K + +EKGK EC+I+GTLFKH +LKP +L E S+E + P +
Sbjct: 65 KVLGLEKGK----------------ECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPH 108
Query: 81 HFVSDSDELILEDELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVF 139
+F+ D LILEDE R+ L G+ + VTGVVVA+ G G+F V DV A
Sbjct: 109 NFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPP 168
Query: 140 NPRTTLSNNENKYV 153
+ E+KYV
Sbjct: 169 QIERPIDLQEDKYV 182
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKH 56
+IE+CP VYF GNQ K++ + I+ +G+ V ++ + ET V + L H
Sbjct: 374 FLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECH 429
>sp|Q9W088|DPOD2_DROME DNA polymerase delta small subunit OS=Drosophila melanogaster
GN=CG12018 PE=2 SV=1
Length = 431
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 113/160 (70%)
Query: 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQP 216
S+ VD+MPG +DPAN LPQQP H C+FP+A++ +TF VTNPY ++ L++GTSGQ
Sbjct: 263 SLPVDIMPGPYDPANFMLPQQPFHKCMFPQAAQLATFQAVTNPYSCRLDEALVVGTSGQN 322
Query: 217 VSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQS 276
VSD+ + ++L + L+ L TL GHVAPTAPDTLACYP+ ++DP I+ CP VY+ GN
Sbjct: 323 VSDLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACYPYIESDPFILRECPHVYYAGNCE 382
Query: 277 KFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECH 316
F T+ E + K RL+ VP F +++VA+++L TL+C
Sbjct: 383 SFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTLDCR 422
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%)
Query: 16 SKFETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVP 75
++ T + + G + KL +L C++IGT+FKHQ KP+IL++ISEE +L P
Sbjct: 39 TRLLTPLAQKKWGNKEPIKKLCELRGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAP 98
Query: 76 QPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 134
QP ++ D+++LEDELQR+ L G ++ TGVV A G +G F V D+ +
Sbjct: 99 QPPRQNYSDPEDKIVLEDELQRVRLQGKLNGQLLATGVVCAALGGTDSDGFFNVEDILF 157
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTL 53
I+ CP VY+ GN F T+ E +GK ++ + ++T + V + TL
Sbjct: 367 FILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTL 419
>sp|P87324|DPOD2_SCHPO DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc1 PE=1 SV=1
Length = 462
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 3/191 (1%)
Query: 125 GKFKVSDVCYATPVFNPRTTLSNNENKYVNHSSIEVDLMPGEFDPANTTLPQQPLHPCLF 184
GK KV Y T +NP T + SSI+V LMPG +D ++T LPQQPLHP L
Sbjct: 253 GKKKVKRYGYDTSAYNPNPTFQLDNFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHPALL 312
Query: 185 PEASKY--STFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLRCGHV 242
++ + S+ VTNP + ++ TSGQ ++D+ K+ + L +E TL H+
Sbjct: 313 TKSKVWLGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHI 372
Query: 243 APTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSS 302
PT+PDTL CYPF D D ++E PD+Y GNQ KF KT+ I + ++L+SVP+F +
Sbjct: 373 TPTSPDTLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGCKTV-INEGNRIQLVSVPEFRKT 431
Query: 303 RTVAILNLSTL 313
+ ++N+ TL
Sbjct: 432 GVLVLINMHTL 442
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 45 EECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD------ELILEDELQRI 98
E+C ++ T + LKPN++ ++++ +V + + +VS D E LED+ RI
Sbjct: 68 EDCWVVATAYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRI 127
Query: 99 PLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 134
G+ + VTGVV+A+ G G+F V DVC+
Sbjct: 128 DCSGSFLYDAGVVTGVVLAVLGHEDEQGRFVVVDVCF 164
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNET 42
++E PD+Y GNQ KF KT+ I +G + ++ + + +T
Sbjct: 391 FVMEEMPDLYLCGNQPKFGCKTV-INEGNRIQLVSVPEFRKT 431
>sp|P46957|DPOD2_YEAST DNA polymerase delta small subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1
Length = 487
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 110/195 (56%), Gaps = 31/195 (15%)
Query: 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEA-------SKYSTFHPVTNPYIFEMEGKLL 209
SI VD+MPG DP++ +LPQQP H LF ++ S + VTNPY F G +
Sbjct: 293 SISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESYFNGSNKEILNLVTNPYEFSYNGVDV 352
Query: 210 MGTSGQPVSDIAKF-----------------------SNLSNPLDILEYTLRCGHVAPTA 246
+ SG+ ++DI K+ ++ + LD++E T++ ++APTA
Sbjct: 353 LAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHRLDLMECTMKWQNIAPTA 412
Query: 247 PDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSSRTVA 306
PDTL CYP+ D DP +++ P VY NQ F T+ +EI KN+++ISVP+F S+ +
Sbjct: 413 PDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEI-GGKNIKIISVPEFSSTGMII 471
Query: 307 ILNLSTLECHSLVVE 321
+L+L TLE ++ ++
Sbjct: 472 LLDLETLEAETVKID 486
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 47 CVIIGTLFKHQQLKPNILKEISEELKLVPQ--PQHTHFVSDSDELILEDELQRIPLHGN- 103
C +G+++ + KPN+L E+ + P +T SDE++LEDE R+ L G+
Sbjct: 102 CWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDF 161
Query: 104 IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPV 138
I +TGVVV I G G F+V D+CY TP+
Sbjct: 162 IRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPL 196
>sp|Q19366|DPOD2_CAEEL Probable DNA polymerase delta small subunit OS=Caenorhabditis
elegans GN=F12F6.7 PE=3 SV=1
Length = 451
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 160 VDLMPGEFDPANTTLPQQPLHPCLFPEASKY-STFHPVTNPYIFEMEGKLLMGTSGQPVS 218
VD+ PG DP ++ P P+H P + VTNPY FE+ G +M SG+ VS
Sbjct: 287 VDVTPGVGDPCSSMWPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVS 346
Query: 219 DIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKF 278
++ + S D +E ++ HVAP PDTL +P + DP+I++ P V GNQ
Sbjct: 347 ELLRTSLKWTGADAIENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHA 406
Query: 279 ETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTL 313
E + I I+ N ++ +P F +R LNLS L
Sbjct: 407 EFRHIPID-GSNCLVVCLPKFSKTRVACFLNLSDL 440
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 18 FETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQP 77
E EI KGK +LSD + EE ++G + K +P+ILK + E K+
Sbjct: 49 LENAEREIGKGKFTHS-QLSDAKQD--EEIFVVGVIVKRIAARPSILKSLLNEDKVAYDD 105
Query: 78 Q---------HTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFK 128
+ S D + LE + Q + L GNI + TG V + G G F
Sbjct: 106 YEEDAEEDEVKRYAGSIEDRIELESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFH 165
Query: 129 VSDVCY 134
V+ + +
Sbjct: 166 VNRLVW 171
>sp|Q0V8S9|CNTP5_CHICK Contactin-associated protein-like 5 OS=Gallus gallus GN=CNTNAP5
PE=2 SV=1
Length = 1305
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 9 VYFTGNQSKFETKTIEIEKGKSVSVLKLSD--LNETDTEECVIIGTLFKHQQLKPNILKE 66
V F G + + T+E++KGK + L D L+ T++ V +G+L Q +++
Sbjct: 217 VLFHGEGQRGDYITLELQKGKLSLHINLGDSNLHFTNSHTSVTLGSLLDDQHWHSVLIER 276
Query: 67 ISEELKLVPQPQHTHFVS--DSDELILEDEL--------------QRIPLHGNID--IHN 108
++++ HF + DSD L ++ EL QR HG I+ +N
Sbjct: 277 FNKQVNFTVDKHTQHFRTKGDSDHLDIDYELSFGGIPVPGKPGTFQRKNFHGCIENLYYN 336
Query: 109 QVTGVVVAIKGTP---VGNGKFKVSD 131
V + +A + P GN F S+
Sbjct: 337 GVNIIDLAKRRKPQIYTGNVTFSCSE 362
>sp|Q9HLK5|DP2S_THEAC DNA polymerase II small subunit OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=polB PE=3 SV=1
Length = 488
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 158 IEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHP----VTNPYIFEMEGKLLMGTS 213
++V +MPG D + PQ P+ P + F P + NPY ++EGK ++
Sbjct: 314 VKVFVMPGNHDTVRLSEPQ-PVFPGKIRD-----LFEPNVAFLPNPYNLKLEGKNVLVYH 367
Query: 214 GQPVSDIAKF---SNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVY 270
G ++D+ + +N + +E L H++P P D +IE PD++
Sbjct: 368 GMSLNDMIELIPGANYDSIGKAIEAILVRRHLSPKYGGNTPMIP-SAVDYHVIEEVPDIF 426
Query: 271 FTGN 274
TG+
Sbjct: 427 ITGH 430
>sp|Q0V8T9|CTP5A_MOUSE Contactin-associated protein like 5-1 OS=Mus musculus GN=Cntnap5a
PE=2 SV=1
Length = 1304
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 9 VYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNE--TDTEECVIIGTLFKHQQLKPNILKE 66
V F G + + T+E++KG+ L L D + T VI+G+L Q +L+
Sbjct: 217 VLFHGEGQRGDHITLELQKGRLALYLNLDDSKARLSSTVPLVILGSLLDDQHWHSVLLER 276
Query: 67 ISEELKLVPQPQHTHFVS--DSDELILEDEL 95
+ ++ HF + D+D L ++ EL
Sbjct: 277 VGKQANFTVDMNTQHFRTKGDTDSLDIDYEL 307
>sp|C1DTW6|PNP_SULAA Polyribonucleotide nucleotidyltransferase OS=Sulfurihydrogenibium
azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=pnp
PE=3 SV=1
Length = 707
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 45 EECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQ 96
EE ++ +F HQ++K L E+ EEL+L + D +E+IL+D+L+
Sbjct: 199 EEDILEAMMFGHQEIKK--LIELQEELRLKCGKEKIQVAIDEEEIILKDKLK 248
>sp|Q0V8T6|CTP5A_RAT Contactin-associated protein like 5-1 OS=Rattus norvegicus
GN=Cntnap5a PE=2 SV=1
Length = 1305
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 9 VYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNE--TDTEECVIIGTLFKHQQLKPNILKE 66
V F G + + T+E++KG+ L L D + T VI+G+L Q +L+
Sbjct: 217 VLFHGEGQRGDHVTLELQKGRLALYLNLDDSKARLSSTVPLVIMGSLLDDQHWHSVLLER 276
Query: 67 ISEELKLVPQPQHTHFVS--DSDELILEDEL 95
+ ++ HF + ++D L ++ EL
Sbjct: 277 VGKQANFTVDMNTQHFQTKGETDALDIDYEL 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,132,357
Number of Sequences: 539616
Number of extensions: 5733914
Number of successful extensions: 12713
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12660
Number of HSP's gapped (non-prelim): 52
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)