Query psy8633
Match_columns 327
No_of_seqs 137 out of 477
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:46:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0j_A DNA polymerase subunit 100.0 1E-104 4E-109 795.1 22.5 321 4-326 55-465 (476)
2 3flo_A DNA polymerase alpha su 99.5 3.6E-13 1.2E-17 134.4 20.9 243 42-312 44-427 (460)
3 3e0j_A DNA polymerase subunit 98.6 5.9E-09 2E-13 104.5 0.8 56 1-56 400-455 (476)
4 2yvt_A Hypothetical protein AQ 94.3 0.04 1.4E-06 48.8 4.9 146 157-318 89-257 (260)
5 1z2w_A Vacuolar protein sortin 93.9 0.6 2.1E-05 39.9 11.5 103 158-320 64-177 (192)
6 3ib7_A ICC protein; metallopho 93.2 0.25 8.5E-06 45.0 8.1 147 157-320 100-278 (330)
7 1s3l_A Hypothetical protein MJ 93.1 0.39 1.3E-05 41.5 8.7 110 157-318 75-188 (190)
8 3ck2_A Conserved uncharacteriz 92.2 1.7 6E-05 36.3 11.6 96 159-314 53-154 (176)
9 2a22_A Vacuolar protein sortin 91.9 2.1 7.2E-05 37.2 12.2 106 158-314 79-193 (215)
10 2kkn_A Uncharacterized protein 90.8 2.3 8E-05 36.1 11.0 97 158-314 74-170 (178)
11 1o7i_A SSB, SSO2364, single st 81.4 3 0.0001 33.2 6.1 36 88-123 41-78 (119)
12 3d03_A Phosphohydrolase; glyce 81.1 0.97 3.3E-05 39.7 3.3 117 157-283 71-204 (274)
13 1su1_A Hypothetical protein YF 80.8 5.8 0.0002 34.3 8.2 95 158-311 89-188 (208)
14 1nnw_A Hypothetical protein; s 80.7 21 0.00073 30.9 12.0 91 201-320 126-222 (252)
15 2kbn_A Conserved protein; nucl 75.0 6.6 0.00022 30.9 6.2 42 88-129 38-83 (109)
16 3dm3_A Replication factor A; p 73.8 7.4 0.00025 30.5 6.2 42 88-129 44-89 (105)
17 2k50_A Replication factor A re 68.5 8.9 0.0003 29.9 5.6 35 88-122 46-84 (115)
18 3qfm_A SAPH, putative uncharac 66.6 25 0.00084 31.6 8.9 88 197-313 118-219 (270)
19 3e0e_A Replication protein A; 65.2 15 0.00051 28.1 6.1 36 88-123 41-78 (97)
20 2k75_A Uncharacterized protein 63.8 17 0.00059 28.3 6.4 40 88-129 41-82 (106)
21 2kct_A Cytochrome C-type bioge 60.6 32 0.0011 26.6 7.2 47 87-133 31-82 (94)
22 3tho_B Exonuclease, putative; 59.5 20 0.00068 33.9 7.2 45 264-312 200-250 (379)
23 1uf3_A Hypothetical protein TT 48.7 26 0.00089 29.2 5.5 48 265-319 179-226 (228)
24 1j6q_A Cytochrome C maturation 48.2 57 0.0019 26.9 7.2 48 87-134 55-104 (136)
25 1nnx_A Protein YGIW; structura 46.5 35 0.0012 27.1 5.5 40 86-125 52-94 (109)
26 4gop_B Putative uncharacterize 41.0 62 0.0021 25.9 6.4 40 88-127 56-104 (136)
27 1xzw_A Purple acid phosphatase 39.5 55 0.0019 30.9 6.8 117 155-281 189-329 (426)
28 1sr3_A APO-CCME; OB fold, beta 37.2 40 0.0014 27.9 4.6 46 88-133 52-98 (136)
29 3kdf_D Replication protein A 3 34.2 53 0.0018 26.2 4.9 39 88-126 51-98 (132)
30 1xm7_A Hypothetical protein AQ 31.7 34 0.0012 28.5 3.5 45 158-217 72-117 (195)
31 1wjj_A Hypothetical protein F2 30.4 48 0.0016 27.6 4.1 36 88-123 65-101 (145)
32 3nem_A Aspartyl-tRNA synthetas 26.7 91 0.0031 30.4 5.9 49 88-136 36-99 (438)
33 2cqa_A RUVB-like 2; TIP48, TIP 25.8 70 0.0024 24.9 3.9 38 55-103 46-83 (95)
34 2nxf_A Putative dimetal phosph 25.7 60 0.002 28.3 4.1 55 263-321 252-312 (322)
35 3rl5_A Metallophosphoesterase 24.6 1.6E+02 0.0055 27.0 7.0 103 200-312 167-292 (296)
36 2pi2_A Replication protein A 3 23.7 1.3E+02 0.0044 27.0 6.1 42 88-129 91-141 (270)
37 4ex5_A Lysine--tRNA ligase; st 20.6 1.1E+02 0.0038 30.6 5.3 49 88-136 106-167 (529)
No 1
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-104 Score=795.10 Aligned_cols=321 Identities=46% Similarity=0.846 Sum_probs=269.5
Q ss_pred ccCCcEEEeCCCC--chhhhhhhhhcCCceeEEeecccccCCceEEEEEceeeecCCCCcchHHHHHhhccCCCCCCCCC
Q psy8633 4 ESCPDVYFTGNQS--KFETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTH 81 (327)
Q Consensus 4 ~~~phvYf~gnq~--~~~~~~a~~kwg~~v~i~~l~~~~~~~~~~~viiGTL~k~m~lkPsiL~e~~~e~~~~~~~~~~~ 81 (327)
+...||||.|+.. +...++|++|||+.+++.+|+++ ++++.||+||||||+|+||||||+||++|+++.+++++.+
T Consensus 55 ~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~klldl--~~ge~c~viGTvyk~m~lKPsIL~eis~e~~~~~~~~~~~ 132 (476)
T 3e0j_A 55 RQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCEL--QPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSK 132 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHSCSCCCBCCSSSC--CTTCCEEEEEEEEEEC----------------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHhhcc--cCCCEEEEEEEEEecccCCCcHHHHHhhhhccCCCCcccc
Confidence 3567999999954 68899999999988999999999 7899999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEecCCceEEEEecccccccccceEEEEEeeEecCCcEEEEEEEecC-CCCCCCCCCCCC------------
Q psy8633 82 FVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYAT-PVFNPRTTLSNN------------ 148 (327)
Q Consensus 82 y~~~~D~l~LED~sgRi~L~g~~~~~~lvTG~Vvav~G~~~~~G~F~V~di~~p~-~~~~~~~~~~~d------------ 148 (327)
|++++|+++|||+||||+|+|.++++.||||+||||+|++.++|.|+|+|||||+ ++|++++...++
T Consensus 133 y~~~~D~l~LEDesGRv~L~g~~~~~~lVTG~VvaV~G~~~~~G~F~V~di~~Pd~ppq~~~~~~~~~~~ialVSGL~ig 212 (476)
T 3e0j_A 133 YIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLG 212 (476)
T ss_dssp CCCSSCEEEEECSSCEEEEEESCCTTTCCTTCEEEEEEEECTTSSEEEEEEEECBCCCCCCCCCCSSCCEEEEECCCCBT
T ss_pred ccCCCceEEEECCCCEEEEEEEcccccccCCcEEEEEEEEcCCCeEEEEEEEcCCCCCCCCCCcCCCCCEEEEECCcccC
Confidence 9999999999999999999998899999999999999999999999999999999 999887643322
Q ss_pred ------------------------------------------------------CCcc---------------ee-----
Q psy8633 149 ------------------------------------------------------ENKY---------------VN----- 154 (327)
Q Consensus 149 ------------------------------------------------------k~~~---------------v~----- 154 (327)
+++| ++
T Consensus 213 s~~~~~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~ld~~L~~ 292 (476)
T 3e0j_A 213 GGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQ 292 (476)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccccccchhhhhhhccccccchhhHHHHHHHHHHHHh
Confidence 1112 00
Q ss_pred -cCceeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHH
Q psy8633 155 -HSSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDIL 233 (327)
Q Consensus 155 -~~~i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m 233 (327)
+++|+|+||||+|||+|.+|||||||+||||++++|.+++++||||+++|+|++|||||||||+||+||+++++++++|
T Consensus 293 l~~~i~V~lmPG~~DP~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~G~~~LgtsGqnidDi~ky~~~~~~l~~m 372 (476)
T 3e0j_A 293 LSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEIL 372 (476)
T ss_dssp HHTTSCEEEECCTTSSSCSSSSCCCCCTTSCHHHHTSTTEEECCSSEEEEETTEEEEECSSHHHHHHHHHSCCCCHHHHH
T ss_pred cccCceEEecCCCCCcccccCCCCCcCHHHhhhhhhcCccEEeCCCeEEEECCEEEEEECCCCHHHHHhcCCCCCHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCCCCCeEEEEeCCCC
Q psy8633 234 EYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTL 313 (327)
Q Consensus 234 ~~~L~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~~t~~~vlvnl~tl 313 (327)
++||+|||+|||||||||||||.++|||||+++||||||||||+|+++++.++++++|||||||+|++||++|||||+||
T Consensus 373 e~~LkwrHlAPTaPdTl~~yP~~~~DpfVi~~~PhVyf~Gnq~~f~t~~~~~~~~~~vrLv~VP~Fs~T~~~vLvdl~tL 452 (476)
T 3e0j_A 373 EWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSL 452 (476)
T ss_dssp HHHHHBTCSCTTSCCC------CCSCTTSCSSCCSEEEEEEESSCEEEEEECSSCCEEEEEEEECHHHHCEEEEEETTTT
T ss_pred HHHHHHhccCCCCCCceeeccCCCCCceeecCCCcEEEeCCCCccceeEEecCCCCeEEEEEcCCcCCCCeEEEEECccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEcccccc
Q psy8633 314 ECHSLVVEDLTEE 326 (327)
Q Consensus 314 ~~~~v~F~~~~~~ 326 (327)
+|++|+|+.++++
T Consensus 453 e~~~v~f~~~~~~ 465 (476)
T 3e0j_A 453 ACQPISFSGFGAE 465 (476)
T ss_dssp BCCEEEEEECCSC
T ss_pred cEEEEEEecccCC
Confidence 9999999987764
No 2
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.6e-13 Score=134.41 Aligned_cols=243 Identities=17% Similarity=0.227 Sum_probs=168.8
Q ss_pred CCceEEEEEceeeecCCCCcchHHHHHhhccCCCCCCCCCccCCCCeEEEecC-----CceEEEEec-ccccccccceEE
Q psy8633 42 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDE-----LQRIPLHGN-IDIHNQVTGVVV 115 (327)
Q Consensus 42 ~~~~~~viiGTL~k~m~lkPsiL~e~~~e~~~~~~~~~~~y~~~~D~l~LED~-----sgRi~L~g~-~~~~~lvTG~Vv 115 (327)
.....++++|.+.++... .| .+ =++..++||-. ..||+|.-+ +..-.|-.|-||
T Consensus 44 ~sq~~v~~vGRI~~Ds~~---------~e---------gk--Ln~~Sl~LE~sr~~g~G~rV~Ldls~l~~~slFPGQIV 103 (460)
T 3flo_A 44 QSQSEIYAVGRIVPDSPT---------YD---------KF--LNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIV 103 (460)
T ss_dssp CCSSCEEEEEEEEESSSS---------CC---------SC--CCTTSEEEECCHHHHTTCEEEEECTTCCCEEECTTCEE
T ss_pred CccccEEEEEEEeeCCCC---------CC---------CC--cchhheEEEeccccCCCeEEEeecccCCceeecCCCEE
Confidence 456789999999999621 00 11 12457899953 579999876 777789999999
Q ss_pred EEEeeEecCCcEEEEEEEecCCCCCCCCC-------------------------CCCC------------------CCcc
Q psy8633 116 AIKGTPVGNGKFKVSDVCYATPVFNPRTT-------------------------LSNN------------------ENKY 152 (327)
Q Consensus 116 av~G~~~~~G~F~V~di~~p~~~~~~~~~-------------------------~~~d------------------k~~~ 152 (327)
|++|+-...+.|.|++|+-+-.+.++... ..+| |...
T Consensus 104 av~G~N~~G~~f~v~ei~~~P~~~~p~s~~~~l~~~~~~~~~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~~kPdv 183 (460)
T 3flo_A 104 AFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHV 183 (460)
T ss_dssp EEEEECSSSSCEEEEEECCCCCCCCCEEEHHHHHHHHHHHTSSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCCCCCSE
T ss_pred EEEEEcCCCCEEEEeeeccCCCCCCCCCCHHHhhhhhhhccCCCcEEEEEeCCccCCCccChHHHHHHHHHHHhccCCCE
Confidence 99999444557999999843321111000 0011 0000
Q ss_pred -------------------e-------------------------e--cCceeEEEcCCCCCCCC--CCCCCCCCCcCCc
Q psy8633 153 -------------------V-------------------------N--HSSIEVDLMPGEFDPAN--TTLPQQPLHPCLF 184 (327)
Q Consensus 153 -------------------v-------------------------~--~~~i~V~lmPG~~Dp~~--~~lPQqplh~~lf 184 (327)
+ + ..++.|+++||++|++. .++||+||+++.+
T Consensus 184 LIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i~~il~~l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~k~l 263 (460)
T 3flo_A 184 LIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKAL 263 (460)
T ss_dssp EEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHTHHHHTTSCTTSEEEEECCTTBTTCSCCSBSBCCCCTTTT
T ss_pred EEEecCcccccCcccccCcccccccccccccCHHHHHHHHHHHHHHhccCCCEEEEeCCcccccCCCCCcCCCCCChhhh
Confidence 1 0 35688999999999984 7999999998765
Q ss_pred CCccCCC-CeeeecCCcEEEECCEEEEEEcCCchhhhhccCC-----CCCh-HHHHHHHHhcccCCCCCCCceecCc---
Q psy8633 185 PEASKYS-TFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSN-----LSNP-LDILEYTLRCGHVAPTAPDTLACYP--- 254 (327)
Q Consensus 185 ~~~~~~~-~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~-----~~~~-l~~m~~~L~~rHlaPtaPdtl~~~P--- 254 (327)
.. .. ++++++||+.|+++|+.|..+|...+.+|..... ..++ -.+++.+|+-||++|.+|-......
T Consensus 264 ~l---~k~nv~~~sNPc~~~in~v~igvss~Dil~~L~e~~~~~~~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~~~~ 340 (460)
T 3flo_A 264 QL---PKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPK 340 (460)
T ss_dssp TC---CTTTEEECCBSEEEEETTEEEEECCSCHHHHCCCEEECHHHHHSCHHHHHHHHHHHHTBSCCCSSCCEEC-----
T ss_pred cC---CcccEEEeCCCEEEEECCEEEEEEcHHHHHHHHHhhcCCCCccccHHHHHHHHHhhcCcccCcCCCccccccccc
Confidence 32 23 8999999999999999999999999998854321 1233 4599999999999999998876542
Q ss_pred -C---------C-------------CCC-------CeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCCC---
Q psy8633 255 -F---------Y-------------DND-------PMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFS--- 301 (327)
Q Consensus 255 -~---------~-------------~~D-------pfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~~--- 301 (327)
+ . .-| =|+.+..|||+++.-.-+.=.+.+.+ |.+|.=..|++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~g~~Ldv~yl~l~e~~~~~~PDilI~PS~l~~F~kvv~~-----~v~INPG~l~k~~~ 415 (460)
T 3flo_A 341 DVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQN-----VVVINPGRFIRATG 415 (460)
T ss_dssp --------------------CCEECCBCGGGGGGGBCGGGCCCSEEECCCSSCCEEEEETT-----EEEEECCCSBCTTS
T ss_pred ccccccccccccccccccccccCCcccceeccchhhcccCCCCCEEEcCCCCcCceEEeCC-----EEEECcccccCCCC
Confidence 0 0 001 12236789999998876666666643 77888788876
Q ss_pred -CCeEEEEeCCC
Q psy8633 302 -SRTVAILNLST 312 (327)
Q Consensus 302 -t~~~vlvnl~t 312 (327)
+||-+-+.++-
T Consensus 416 g~GTya~l~i~~ 427 (460)
T 3flo_A 416 NRGSYAQITVQC 427 (460)
T ss_dssp CBCEEEEEEECC
T ss_pred CCceeEEEEEeC
Confidence 48887776654
No 3
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=98.61 E-value=5.9e-09 Score=104.49 Aligned_cols=56 Identities=30% Similarity=0.528 Sum_probs=53.3
Q ss_pred CccccCCcEEEeCCCCchhhhhhhhhcCCceeEEeecccccCCceEEEEEceeeec
Q psy8633 1 MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKH 56 (327)
Q Consensus 1 fi~~~~phvYf~gnq~~~~~~~a~~kwg~~v~i~~l~~~~~~~~~~~viiGTL~k~ 56 (327)
|||++||||||+|||++|+++.++...|+.+++++||+|++++..+++++.||.++
T Consensus 400 fVi~~~PhVyf~Gnq~~f~t~~~~~~~~~~vrLv~VP~Fs~T~~~vLvdl~tLe~~ 455 (476)
T 3e0j_A 400 FIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQ 455 (476)
T ss_dssp TSCSSCCSEEEEEEESSCEEEEEECSSCCEEEEEEEECHHHHCEEEEEETTTTBCC
T ss_pred eeecCCCcEEEeCCCCccceeEEecCCCCeEEEEEcCCcCCCCeEEEEECccccEE
Confidence 89999999999999999999999888888899999999999999999999999887
No 4
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=94.34 E-value=0.04 Score=48.75 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=72.7
Q ss_pred ceeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChH------
Q psy8633 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPL------ 230 (327)
Q Consensus 157 ~i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l------ 230 (327)
.++|..+|||||...... + ...+.....+.++....|...+.++|++|+|..+..-.. .+.. +...
T Consensus 89 ~~pv~~v~GNHD~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~~~~~~~~--~~~~-~~~~~~~~~~ 160 (260)
T 2yvt_A 89 GVKTFVVPGKNDAPLKIF----L-RAAYEAETAYPNIRVLHEGFAGWRGEFEVIGFGGLLTEH--EFEE-DFVLKYPRWY 160 (260)
T ss_dssp CSEEEEECCTTSCCHHHH----H-HHHHHTTTTCTTEEECSSEEEEETTTEEEEEECSEEESS--CCBS-SSSCEEEHHH
T ss_pred CCcEEEEcCCCCchhhhh----H-HHHhhhccCCcceEEecCcceEEECCEEEEecCCCcCCC--CcCH-HHHhhcchhh
Confidence 578999999999753210 0 011222222334555555555889999999997643211 1111 0000
Q ss_pred --HHHHHHHh---------cccCCCCCC--Cce-ecCcCCCCC---CeeecCCCcEEEcCCccccceeEEeecCCceEEE
Q psy8633 231 --DILEYTLR---------CGHVAPTAP--DTL-ACYPFYDND---PMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRL 293 (327)
Q Consensus 231 --~~m~~~L~---------~rHlaPtaP--dtl-~~~P~~~~D---pfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~l 293 (327)
+.+ ..|+ --|-.|..+ |.. ..+.....+ -++-+.-|++.++||.| -+...+ + ++.+
T Consensus 161 ~~~~l-~~l~~~~~~~~Il~~H~pp~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~vl~GH~H-~~~~~~----~-~~~~ 233 (260)
T 2yvt_A 161 VEYIL-KFVNELKPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVG-KGHELV----G-NTIV 233 (260)
T ss_dssp HHHHG-GGGGGSCCCEEEEEESSCCSCSSTTCBTTBSCCCSCHHHHHHHHHHCCSEEEECSSC-CEEEEE----T-TEEE
T ss_pred HHHHH-HHHHhcCCCCEEEEECCCccccccccCcccccccCcHHHHHHHHHhCCCEEEECCcc-CCcEEe----C-CEEE
Confidence 112 1111 124333221 111 000000000 01113468999999999 443322 1 2456
Q ss_pred EecCCCCCCCeEEEEeCCCCcEEEE
Q psy8633 294 ISVPDFFSSRTVAILNLSTLECHSL 318 (327)
Q Consensus 294 v~vP~F~~t~~~vlvnl~tl~~~~v 318 (327)
+...+... |...+++++.-+++..
T Consensus 234 in~Gs~~~-g~~~ii~~~~~~~~~~ 257 (260)
T 2yvt_A 234 VNPGEFEE-GRYAFLDLTQHKIKLE 257 (260)
T ss_dssp EECCBGGG-TEEEEEETTTTEEEEE
T ss_pred EeCCCCCC-CceEEEEEcCCEEEee
Confidence 76666654 7999999987655443
No 5
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=93.94 E-value=0.6 Score=39.87 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=62.9
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHHH
Q psy8633 158 IEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTL 237 (327)
Q Consensus 158 i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L 237 (327)
.++..++||||... .+| ....++++|.+++.+||..... ..+. +.+..++
T Consensus 64 ~~~~~v~GNhD~~~-~lp----------------------~~~~~~~~~~~i~l~Hg~~~~~------~~~~-~~l~~~~ 113 (192)
T 1z2w_A 64 GDVHIVRGDFDENL-NYP----------------------EQKVVTVGQFKIGLIHGHQVIP------WGDM-ASLALLQ 113 (192)
T ss_dssp SEEEECCCTTCCCT-TSC----------------------SEEEEEETTEEEEEECSCCCCB------TTCH-HHHHHHH
T ss_pred CCEEEEcCCcCccc-cCC----------------------cceEEEECCEEEEEECCCcCCC------CCCH-HHHHHHH
Confidence 47999999999765 122 1245778999999999876321 1111 1111111
Q ss_pred hcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCCC---------CCeEEEE
Q psy8633 238 RCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFS---------SRTVAIL 308 (327)
Q Consensus 238 ~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~~---------t~~~vlv 308 (327)
-..-.+++++||.|....... ..++++..++.+. .++.+++
T Consensus 114 -------------------------~~~~~d~vi~GHtH~~~~~~~-----~~~~~inpGS~~~~~~~~~~~~~~~y~il 163 (192)
T 1z2w_A 114 -------------------------RQFDVDILISGHTHKFEAFEH-----ENKFYINPGSATGAYNALETNIIPSFVLM 163 (192)
T ss_dssp -------------------------HHHSSSEEECCSSCCCEEEEE-----TTEEEEECCCTTCCCCSSCSCCCCEEEEE
T ss_pred -------------------------HhcCCCEEEECCcCcCccEeE-----CCEEEEECCcccccCCCCCcCCCCcEEEE
Confidence 112358899999998765443 2367777766532 4688899
Q ss_pred eCCCC--cEEEEEE
Q psy8633 309 NLSTL--ECHSLVV 320 (327)
Q Consensus 309 nl~tl--~~~~v~F 320 (327)
+++.- +.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~ 177 (192)
T 1z2w_A 164 DIQASTVVTYVYQL 177 (192)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEECCEEEEEEEEc
Confidence 98653 3444444
No 6
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=93.20 E-value=0.25 Score=45.00 Aligned_cols=147 Identities=9% Similarity=0.040 Sum_probs=74.9
Q ss_pred ceeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHH
Q psy8633 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYT 236 (327)
Q Consensus 157 ~i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~ 236 (327)
.+++.++|||||.... +... |.... .....-.+.+.++|+++++.++.....-.... ....+++++..
T Consensus 100 ~~pv~~v~GNHD~~~~------~~~~-~~~~~----~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~-~~~q~~wl~~~ 167 (330)
T 3ib7_A 100 GAELVWVMGNHDDRAE------LRKF-LLDEA----PSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEI-RASQLGWLAEE 167 (330)
T ss_dssp TCEEEECCCTTSCHHH------HHHH-HHCCC----CCCSCCCEEEEETTEEEEECCCCCTTCCSBCC-CHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCHHH------HHHH-hcccc----cccCCcceEEEeCCEEEEEecCCCCCCCCCcc-CHHHHHHHHHH
Confidence 6799999999996211 0000 10000 00111235789999999998876532111111 12356777777
Q ss_pred Hhcc---------cCCCCCCCceecCcC--CCCCCe--ee-cCCCcEEEcCCccccceeEEeecCCceEEEEecCCCC--
Q psy8633 237 LRCG---------HVAPTAPDTLACYPF--YDNDPM--II-ESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFF-- 300 (327)
Q Consensus 237 L~~r---------HlaPtaPdtl~~~P~--~~~Dpf--vi-~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~-- 300 (327)
|... |-.|.....-+...+ ...+-| ++ +.-.+++++||.|......+.| +.++.-|+-+
T Consensus 168 l~~~~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~~l~~~l~~~~v~~v~~GH~H~~~~~~~~g-----~~~~~~gs~~~~ 242 (330)
T 3ib7_A 168 LATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVG-----IPVSVASATCYT 242 (330)
T ss_dssp TTSCCTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSSEEEEEECSSSSCEEEEETT-----EEEEECCCSSCE
T ss_pred HHhcccCCeEEEEECCCCCCCccccccccccCHHHHHHHHhccCceEEEECCCCCcccceECC-----EEEEecCcceec
Confidence 6532 333332211100000 000000 11 2347899999999988666532 5566655543
Q ss_pred --------------CCCeEEEEeCCCC--cEEEEEE
Q psy8633 301 --------------SSRTVAILNLSTL--ECHSLVV 320 (327)
Q Consensus 301 --------------~t~~~vlvnl~tl--~~~~v~F 320 (327)
..+...+|++..- ..+.+.+
T Consensus 243 ~~~~~~~g~~~~~~~~~gy~iv~i~~~~~~~~~v~~ 278 (330)
T 3ib7_A 243 QDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIPL 278 (330)
T ss_dssp ECTTSCTTCCCEESCSCEEEEEEECSSCEEEEEEEC
T ss_pred cCCCCCCcceeccCCCCceEEEEEECCCeEEEEecc
Confidence 1245677777753 4444443
No 7
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=93.07 E-value=0.39 Score=41.48 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=67.6
Q ss_pred ceeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHH
Q psy8633 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYT 236 (327)
Q Consensus 157 ~i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~ 236 (327)
..++..++||||.....+ ...+.+. .+.. ....|..++++|.+++.+||-..+ +.+.+
T Consensus 75 ~~~~~~V~GNhD~~~~~~-----~~~~~~~--~~~~--l~~~~~~~~~~~~~ill~Hg~~~~-------------l~~~~ 132 (190)
T 1s3l_A 75 NANIIATYGNNDGERCKL-----KEWLKDI--NEEN--IIDDFISVEIDDLKFFITHGHHQS-------------VLEMA 132 (190)
T ss_dssp SSEEEEECCTTCCCHHHH-----HHHHHHH--CTTC--EEESEEEEEETTEEEEEEESCCHH-------------HHHHH
T ss_pred CCCEEEEeCCCcchHHHH-----HHHhccc--Chhh--hcccceEEeeCCcEEEEECCChHH-------------HHHHH
Confidence 458999999999764310 0000111 0111 335567889999999999997643 11111
Q ss_pred HhcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCC----CCCeEEEEeCCC
Q psy8633 237 LRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFF----SSRTVAILNLST 312 (327)
Q Consensus 237 L~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~----~t~~~vlvnl~t 312 (327)
.+. .-++++++||.|....... ..+.+|...+.. ..++.+++++++
T Consensus 133 ~~~-------------------------~~~d~vl~GHtH~~~~~~~-----~~~~~iNpGs~~~r~~~~~~y~il~~~~ 182 (190)
T 1s3l_A 133 IKS-------------------------GLYDVVIYGHTHERVFEEV-----DDVLVINPGECCGYLTGIPTIGILDTEK 182 (190)
T ss_dssp HHH-------------------------SCCSEEEEECSSCCEEEEE-----TTEEEEECCCSSCTTTSCCEEEEEETTT
T ss_pred Hhc-------------------------CCCCEEEECCCCCcceEEE-----CCEEEEECCcccccCCCCCEEEEEEcCC
Confidence 000 1368999999998776543 236677665543 247899999988
Q ss_pred CcEEEE
Q psy8633 313 LECHSL 318 (327)
Q Consensus 313 l~~~~v 318 (327)
.+++.+
T Consensus 183 ~~v~~~ 188 (190)
T 1s3l_A 183 KEYREI 188 (190)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 665544
No 8
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=92.24 E-value=1.7 Score=36.31 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=58.7
Q ss_pred eEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHHHh
Q psy8633 159 EVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLR 238 (327)
Q Consensus 159 ~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L~ 238 (327)
++..++||||... .+| . ...++++|.+++.+||-...- ..+ .+.+...++
T Consensus 53 ~~~~v~GNhD~~~-~~p----------~------------~~~~~~~~~~i~~~Hg~~~~~------~~~-~~~l~~~~~ 102 (176)
T 3ck2_A 53 GIRVVKGNMDFYA-GYP----------E------------RLVTELGSTKIIQTHGHLFDI------NFN-FQKLDYWAQ 102 (176)
T ss_dssp TEEECCCTTCCST-TCC----------S------------EEEEEETTEEEEEECSGGGTT------TTC-SHHHHHHHH
T ss_pred CeEEecCcccchh-cCC----------c------------EEEEEECCeEEEEECCCccCC------CCC-HHHHHHHHH
Confidence 6899999999653 222 1 135678999999999965320 001 111211111
Q ss_pred cccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCC-----CC-CeEEEEeCCC
Q psy8633 239 CGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFF-----SS-RTVAILNLST 312 (327)
Q Consensus 239 ~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~-----~t-~~~vlvnl~t 312 (327)
+.-++++++||.|........ .++++...+.. .. ++..++++++
T Consensus 103 -------------------------~~~~d~vi~GHtH~~~~~~~~-----~~~~inpGs~~~~~~~~~~~~y~il~~~~ 152 (176)
T 3ck2_A 103 -------------------------EEEAAICLYGHLHVPSAWLEG-----KILFLNPGSISQPRGTIRECLYARVEIDD 152 (176)
T ss_dssp -------------------------HTTCSEEECCSSCCEEEEEET-----TEEEEEECCSSSCCTTCCSCCEEEEEECS
T ss_pred -------------------------hcCCCEEEECCcCCCCcEEEC-----CEEEEECCCCCcCCCCCCCCeEEEEEEcC
Confidence 223578999999987665432 25666665443 23 7889999876
Q ss_pred Cc
Q psy8633 313 LE 314 (327)
Q Consensus 313 l~ 314 (327)
-+
T Consensus 153 ~~ 154 (176)
T 3ck2_A 153 SY 154 (176)
T ss_dssp SE
T ss_pred CE
Confidence 43
No 9
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=91.95 E-value=2.1 Score=37.24 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=62.5
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHHH
Q psy8633 158 IEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTL 237 (327)
Q Consensus 158 i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L 237 (327)
.++.+++||||.....+ . +.. +........++++|.+++.+||-... +..+ .+.+..++
T Consensus 79 ~~v~~V~GNHD~~~~~~-~----~~~---------~~~lp~~~~~~~~~~~i~l~Hg~~~~------~~~~-~~~l~~~~ 137 (215)
T 2a22_A 79 KNVYIVSGDLDSAIFNP-D----PES---------NGVFPEYVVVQIGEFKIGLMHGNQVL------PWDD-PGSLEQWQ 137 (215)
T ss_dssp SCEEECCCTTCCSCCBC-C----GGG---------TBCCCSEEEEEETTEEEEEECSTTSS------STTC-HHHHHHHH
T ss_pred CCEEEecCCCcCccccc-C----hhh---------HhhCCceEEEecCCeEEEEEcCCccC------CCCC-HHHHHHHH
Confidence 47999999999765431 1 011 11112234577899999999987632 1111 12222221
Q ss_pred hcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCCC---------CCeEEEE
Q psy8633 238 RCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFS---------SRTVAIL 308 (327)
Q Consensus 238 ~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~~---------t~~~vlv 308 (327)
+ +.-++++++||.|....... ..++++..++... .++.+++
T Consensus 138 ~-------------------------~~~~d~vl~GHtH~~~~~~~-----~~~~~inpGS~~~~~~~~~~~~~~~y~il 187 (215)
T 2a22_A 138 R-------------------------RLDCDILVTGHTHKLRVFEK-----NGKLFLNPGTATGAFSALTPDAPPSFMLM 187 (215)
T ss_dssp H-------------------------HHTCSEEEECSSCCCEEEEE-----TTEEEEECCCSSCCCCTTSTTCCCEEEEE
T ss_pred h-------------------------hcCCCEEEECCcCCCccEee-----CCEEEEECCcccccCCCCCCCCCCcEEEE
Confidence 1 12357899999998765432 2367777766532 4688899
Q ss_pred eCCCCc
Q psy8633 309 NLSTLE 314 (327)
Q Consensus 309 nl~tl~ 314 (327)
++..-+
T Consensus 188 ~i~~~~ 193 (215)
T 2a22_A 188 ALQGNK 193 (215)
T ss_dssp EEETTE
T ss_pred EEeCCc
Confidence 887543
No 10
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=90.83 E-value=2.3 Score=36.09 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=61.1
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHHH
Q psy8633 158 IEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTL 237 (327)
Q Consensus 158 i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L 237 (327)
.++..++||||..... .-+| ....++++|.+++.+||-.. +.+.-+...
T Consensus 74 ~~v~~V~GNhD~~~~~--------~~lp------------~~~~~~~~g~~i~l~HG~~~-----------~~~~~~~~~ 122 (178)
T 2kkn_A 74 KEFYGVHGNMDYPDVK--------EHLP------------FSKVLLVEGVTIGMCHGWGA-----------PWDLKDRLL 122 (178)
T ss_dssp SSEEECCCSSSCGGGG--------GTSC------------SCEEEEETTEEEEECCSCCC-----------HHHHHHHHH
T ss_pred CCEEEEECCCCcHHHH--------hhCC------------cceEEEECCEEEEEECCCCC-----------CCCHHHHHH
Confidence 4799999999975310 0011 22568899999999999642 111111111
Q ss_pred hcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCCCCCeEEEEeCCCCc
Q psy8633 238 RCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLE 314 (327)
Q Consensus 238 ~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~~t~~~vlvnl~tl~ 314 (327)
+. + +.-++++++||.|....... ..+++|...+... ++.+++++++-+
T Consensus 123 ~~---------------------~--~~~~d~vi~GHtH~~~~~~~-----~~~~~iNpGS~~~-~sy~il~~~~~~ 170 (178)
T 2kkn_A 123 KV---------------------F--NEKPQVILFGHTHEPEDTVK-----AGVRFLNPGSLAE-GSYAVLELDGGE 170 (178)
T ss_dssp HH---------------------S--SSCCSEEECCSCSSCCEEEE-----TTEEEECCCCTTT-TEEEEEEEETTE
T ss_pred HH---------------------h--ccCCCEEEECccCCCCeEEe-----CCEEEEECCCCCC-CeEEEEEECCCE
Confidence 00 0 12358899999998775543 2367888777665 889999987644
No 11
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=81.40 E-value=3 Score=33.23 Aligned_cols=36 Identities=28% Similarity=0.223 Sum_probs=29.2
Q ss_pred eEEEecCCceEEEEec-ccccccccceEEEEE-eeEec
Q psy8633 88 ELILEDELQRIPLHGN-IDIHNQVTGVVVAIK-GTPVG 123 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~-~~~~~lvTG~Vvav~-G~~~~ 123 (327)
.+.|.|+||+|++... -..+.+-.|-||.+. |....
T Consensus 41 ~~~l~D~TG~I~~tlW~~~~~~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 41 EAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTTA 78 (119)
T ss_dssp EEEEEETTEEEEEEEEGGGTTCCCTTCEEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEECChhhcCCCCCEEEEEeEEEEE
Confidence 6999999999999865 344678899999999 66543
No 12
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=81.05 E-value=0.97 Score=39.71 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=56.8
Q ss_pred ceeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeee--ecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHH
Q psy8633 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHP--VTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILE 234 (327)
Q Consensus 157 ~i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~--vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~ 234 (327)
.+++..+|||||..... ...|+.. |-.+.. -..-+.+..+|++|+|........-.... .+..+++++
T Consensus 71 ~~p~~~v~GNHD~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ld~~~~~~~~~~~-~~~~~~wl~ 140 (274)
T 3d03_A 71 NYPLYLIPGNHDDKALF-------LEYLQPL--CPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWL-TDETISWLE 140 (274)
T ss_dssp SSCEEEECCTTSCHHHH-------HHHHGGG--SGGGCSCGGGCCEEECSSSSEEEECCCCCTTCSSBCC-CHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHH-------HHHhhhh--hcCcccCCCceEEEEEeCCEEEEEEeCCCCCCCCCee-CHHHHHHHH
Confidence 46899999999974321 0111110 100000 01125677889999998765432111111 123466777
Q ss_pred HHHhc---------ccCCCCCCCce--ecCcCCCCCCe--eecCC--CcEEEcCCccccceeEE
Q psy8633 235 YTLRC---------GHVAPTAPDTL--ACYPFYDNDPM--IIESC--PDVYFTGNQSKFETKTI 283 (327)
Q Consensus 235 ~~L~~---------rHlaPtaPdtl--~~~P~~~~Dpf--vi~~~--Phv~f~Gn~~~f~~~~~ 283 (327)
..|+. .|..|.....- .-+.....+-| ++.+. .+++++||.|......+
T Consensus 141 ~~l~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~vl~GH~H~~~~~~~ 204 (274)
T 3d03_A 141 AQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQY 204 (274)
T ss_dssp HHHHHHTTSCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHHHCTTEEEEEECSSSSCEEEEE
T ss_pred HHHHhCCCCCEEEEECCCCcccCCcccCcccCcCHHHHHHHHHhCCCceEEEeCCCCCchhheE
Confidence 66653 25444332110 00111011111 23333 58999999998876554
No 13
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=80.84 E-value=5.8 Score=34.29 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=57.4
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHHH
Q psy8633 158 IEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTL 237 (327)
Q Consensus 158 i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L 237 (327)
.++.+++||||.....+- .-||.. ....+++++|.+++.+||-.... +
T Consensus 89 ~~v~~V~GNHD~~~~~~~------~~~~~~---------~~~~~~~~~g~~i~l~Hg~~~~~-------~---------- 136 (208)
T 1su1_A 89 HKVIAVRGNCDSEVDQML------LHFPIT---------APWQQVLLEKQRLFLTHGHLFGP-------E---------- 136 (208)
T ss_dssp GGEEECCCTTCCHHHHHH------SSSCCC---------CSEEEEECSSCEEEEECSSSSBT-------T----------
T ss_pred CceEEEECCCchHHHHhh------hhcccc---------CceEEEEECCcEEEEECCCCCCc-------c----------
Confidence 589999999997521000 001110 11246788999999999965321 0
Q ss_pred hcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccceeEEeecCCceEEEEecCCCC-----CCCeEEEEeCC
Q psy8633 238 RCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFF-----SSRTVAILNLS 311 (327)
Q Consensus 238 ~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~-----~t~~~vlvnl~ 311 (327)
.+. + + ...+++++||.|....... .++.+|...+.. ...+.++++.+
T Consensus 137 -----------~l~-------~---~-~~~d~vi~GHtH~~~~~~~-----~~~~~iNpGs~~~pr~~~~~sy~il~~~ 188 (208)
T 1su1_A 137 -----------NLP-------A---L-NQNDVLVYGHTHLPVAEQR-----GEIFHFNPGSVSIPKGGNPASYGMLDND 188 (208)
T ss_dssp -----------BCC-------C---C-CTTCEEECCSSCCCEEEEE-----TTEEEEECCCSSCCCTTCCCEEEEEETT
T ss_pred -----------hhh-------h---h-cCCCEEEECCcccCccEEe-----CCEEEEECCCCcCCCCCCCCEEEEEECC
Confidence 111 0 1 1348999999997765542 236677766554 35688999965
No 14
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=80.66 E-value=21 Score=30.86 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=54.4
Q ss_pred EEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHHHhcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCCccccce
Q psy8633 201 IFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFET 280 (327)
Q Consensus 201 ~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn~~~f~~ 280 (327)
.+.++|.+++.+||-.......+.-....-+.+...++. + .-++++++||.|....
T Consensus 126 ~~~~~~~~i~~~H~~p~~~~~~~~~~~~~~~~l~~~~~~-------------~-----------~~~~~vi~GHtH~~~~ 181 (252)
T 1nnw_A 126 VDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRP-------------V-----------KDYEMLIVASPMYPVD 181 (252)
T ss_dssp EEEETTEEEEEESSCSSCTTTCCCCSSCCHHHHHHHHGG-------------G-----------TTSSEEEESTTCSEEE
T ss_pred EEeeCCcEEEEEcCCCCCCcccccCCCCCHHHHHHHHhc-------------C-----------CCCCEEEECCccccce
Confidence 456789999999987643332222111111333333321 0 1357899999998766
Q ss_pred eEEeecCCceEEEEecCCCC------CCCeEEEEeCCCCcEEEEEE
Q psy8633 281 KTIEIEKDKNVRLISVPDFF------SSRTVAILNLSTLECHSLVV 320 (327)
Q Consensus 281 ~~~~~~~~~~v~lv~vP~F~------~t~~~vlvnl~tl~~~~v~F 320 (327)
..+. ++.+|..++.. ..++.+++|++..+++...+
T Consensus 182 ~~~~-----~~~~in~Gs~~~~~~~~~~~~y~il~~~~~~v~~~~v 222 (252)
T 1nnw_A 182 AMTR-----YGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIEV 222 (252)
T ss_dssp EEET-----TEEEEEECCSSSCSSSSCCEEEEEEETTTCCEEEEEE
T ss_pred EecC-----CeEEEECCCccCCCCCCCcceEEEEECCCCeEEEEEe
Confidence 5542 25667766654 24678999998877766554
No 15
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=75.03 E-value=6.6 Score=30.90 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=32.2
Q ss_pred eEEEecCCceEEEEec--ccccccccceEEEEE-eeEec-CCcEEE
Q psy8633 88 ELILEDELQRIPLHGN--IDIHNQVTGVVVAIK-GTPVG-NGKFKV 129 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~--~~~~~lvTG~Vvav~-G~~~~-~G~F~V 129 (327)
.+.|.|+||+|++.-. .+...+-.|-+|-+. |.... +|.+.+
T Consensus 38 ~~~l~DeTG~I~~t~W~~~~~~~~~~G~~V~i~n~~v~~~~G~~~L 83 (109)
T 2kbn_A 38 VGLLGDETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQV 83 (109)
T ss_dssp EEEEECTTCCEEEEEEGGGCCCCCCTTCEEEEEEEEEEEETTEEEE
T ss_pred EEEEECCCCeEEEEEECcccccccCCCCEEEEEEEEEEEECCEEEE
Confidence 3899999999999864 466789999999999 45443 455554
No 16
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=73.84 E-value=7.4 Score=30.52 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=31.5
Q ss_pred eEEEecCCceEEEEec-cccc-ccccceEEEEEeeEecC--CcEEE
Q psy8633 88 ELILEDELQRIPLHGN-IDIH-NQVTGVVVAIKGTPVGN--GKFKV 129 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~-~~~~-~lvTG~Vvav~G~~~~~--G~F~V 129 (327)
.+.|.|+||+|++... -++. .+-.|-|+.+.|..... |..++
T Consensus 44 ~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i~g~vk~~~~g~~eL 89 (105)
T 3dm3_A 44 SFIVRDETGSIRVTLWDNLTDIDVGRGDYVRVRGYIREGYYGGLEC 89 (105)
T ss_dssp EEEEEETTEEEEEEEEGGGGGSCCCTTCEEEEEEEEEECTTSSEEE
T ss_pred EEEEECCCCcEEEEEECcccccccCCCCEEEEEEEEEEccCCCEEE
Confidence 6999999999999854 2333 79999999999965543 45443
No 17
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=68.53 E-value=8.9 Score=29.93 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=28.4
Q ss_pred eEEEecCCceEEEEec----ccccccccceEEEEEeeEe
Q psy8633 88 ELILEDELQRIPLHGN----IDIHNQVTGVVVAIKGTPV 122 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~----~~~~~lvTG~Vvav~G~~~ 122 (327)
.+.|.|+||+|++... .....|-.|-++.+.|...
T Consensus 46 ~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v 84 (115)
T 2k50_A 46 NVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKDVNI 84 (115)
T ss_dssp EEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEEEEE
T ss_pred EEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEeeEE
Confidence 6899999999999843 1224789999999999973
No 18
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=66.57 E-value=25 Score=31.60 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=51.2
Q ss_pred cCCcEE--EECCEEEEEEcCCchhhhhccCCCCChHHHHHHHHhcccCCCCCCCceecCcCCCCCCeeecCCCcEEEcCC
Q psy8633 197 TNPYIF--EMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGN 274 (327)
Q Consensus 197 tNP~~~--~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L~~rHlaPtaPdtl~~~P~~~~Dpfvi~~~Phv~f~Gn 274 (327)
+=|... +++|.+++.+||-+-++.-.+.......+.+..+++ +.-.+++++||
T Consensus 118 ~LP~~~~~~~~g~~i~lvHg~p~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~d~~i~GH 172 (270)
T 3qfm_A 118 NQPLQIHRQFGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVT-------------------------HPPCDIAVYGH 172 (270)
T ss_dssp SCCSEEEEEETTEEEEEESSBTTBSSSSTTSTTCCHHHHHHTTT-------------------------TTTCSEEECCS
T ss_pred hCCCceEEEECCcEEEEEECCCCCCCCceecCCCcHHHHHHHhc-------------------------ccCCCEEEECC
Confidence 345554 669999999999876544333322333334443332 11257999999
Q ss_pred ccccceeEEeecCCceEEEEecCC-----CCC-------CCeEEEEeCCCC
Q psy8633 275 QSKFETKTIEIEKDKNVRLISVPD-----FFS-------SRTVAILNLSTL 313 (327)
Q Consensus 275 ~~~f~~~~~~~~~~~~v~lv~vP~-----F~~-------t~~~vlvnl~tl 313 (327)
.|.-..... ...+.+|+..+ +.. ..+-+++++..-
T Consensus 173 tH~~~~~~~----~~~~~~iNpGSvg~pr~~~~~~~~~~~asyaild~~~~ 219 (270)
T 3qfm_A 173 IHQQLLRYG----TGGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDK 219 (270)
T ss_dssp SCSEEEEEC----TTSCEEEEECCSSSCCCSSTTGGGCCCEEEEEEEEETT
T ss_pred cCchHheec----cCCEEEEECCCccCCCCCCccccCCCCCEEEEEEecCC
Confidence 996544331 12355665544 321 367899998753
No 19
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=65.22 E-value=15 Score=28.13 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=29.1
Q ss_pred eEEEecCCceEEEEec-cccc-ccccceEEEEEeeEec
Q psy8633 88 ELILEDELQRIPLHGN-IDIH-NQVTGVVVAIKGTPVG 123 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~-~~~~-~lvTG~Vvav~G~~~~ 123 (327)
.+.|.|+||+|++... -+++ .+-.|-++.+.|....
T Consensus 41 ~~~l~DeTG~I~~tlW~~~~~~~i~~Gdvv~i~g~v~~ 78 (97)
T 3e0e_A 41 SLFLKDDTGSIRGTLWNELADFEVKKGDIAEVSGYVKQ 78 (97)
T ss_dssp EEEEEETTEEEEEEEEGGGGGCCCCTTCEEEEEEEEEE
T ss_pred EEEEECCCCcEEEEEECCccccccCCCCEEEEEEEEEE
Confidence 6899999999999964 3344 5899999999998543
No 20
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=63.78 E-value=17 Score=28.30 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=29.6
Q ss_pred eEEEecCCceEEEEecccccccccceEEEEE-eeEec-CCcEEE
Q psy8633 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIK-GTPVG-NGKFKV 129 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~~~~~~lvTG~Vvav~-G~~~~-~G~F~V 129 (327)
.+.|.|+||+|++...-+. +-.|-+|-+. |.... +|.+++
T Consensus 41 ~~~l~DeTG~I~~tlW~~~--l~~Gdvv~i~ng~v~~~~g~~~L 82 (106)
T 2k75_A 41 QGYIEDDTARIRISSFGKQ--LQDSDVVRIDNARVAQFNGYLSL 82 (106)
T ss_dssp EEEEECSSCEEEEEEESSC--CCTTEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEcCCCeEEEEEEcCc--cCCCCEEEEEeeEEeEECCEEEE
Confidence 6999999999999876223 9999999999 55432 344443
No 21
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=60.60 E-value=32 Score=26.61 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=39.4
Q ss_pred CeEEEecC---CceEEEEec-ccccccccceEEEEEeeEec-CCcEEEEEEE
Q psy8633 87 DELILEDE---LQRIPLHGN-IDIHNQVTGVVVAIKGTPVG-NGKFKVSDVC 133 (327)
Q Consensus 87 D~l~LED~---sgRi~L~g~-~~~~~lvTG~Vvav~G~~~~-~G~F~V~di~ 133 (327)
-...|.|. ...|.+.=. +-++.|--|.=|=+.|++.+ +|.|.+++++
T Consensus 31 v~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~~g~F~A~evL 82 (94)
T 2kct_A 31 VRFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPGEDTFKARTLM 82 (94)
T ss_dssp EEEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTTCSEEEEEEEE
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCCCCEEEEeEEE
Confidence 36788887 888888744 66888989988889999988 8999999976
No 22
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=59.54 E-value=20 Score=33.88 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=27.2
Q ss_pred cCCCcEEEcCCccccceeEEeecCCceEEEEec---CCCCC---CCeEEEEeCCC
Q psy8633 264 ESCPDVYFTGNQSKFETKTIEIEKDKNVRLISV---PDFFS---SRTVAILNLST 312 (327)
Q Consensus 264 ~~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~v---P~F~~---t~~~vlvnl~t 312 (327)
..-.|.++.||.|.... +.+ +..++---. .+|++ .+.+.+|+++.
T Consensus 200 ~~~~dyvalGH~H~~q~--~~~--~~~i~y~GS~~~~~f~E~~~~k~~~lv~~~~ 250 (379)
T 3tho_B 200 PSVVDYAALGHIHSFRE--IQK--QPLTIYPGSLIRIDFGEEADEKGAVFVELKR 250 (379)
T ss_dssp CTTSSEEEEESCSSCEE--EEE--TTEEEECCCSSCCSGGGSSSCCEEEEEECCS
T ss_pred CcCCCEEEcccccCCeE--eCC--CCcEEecCCCCCCCcccccCCCEEEEEEEcC
Confidence 45679999999998842 221 112221111 25654 57899999975
No 23
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=48.66 E-value=26 Score=29.23 Aligned_cols=48 Identities=8% Similarity=0.103 Sum_probs=33.2
Q ss_pred CCCcEEEcCCccccceeEEeecCCceEEEEecCCCCCCCeEEEEeCCCCcEEEEE
Q psy8633 265 SCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLV 319 (327)
Q Consensus 265 ~~Phv~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~~t~~~vlvnl~tl~~~~v~ 319 (327)
.-++++++||.| .+.... ..++++...++. .+...++|++..+++.++
T Consensus 179 ~~~~~~~~GH~H-~~~~~~-----~~~~~in~Gs~~-~~~~~i~~~~~~~~~~~~ 226 (228)
T 1uf3_A 179 HNPLLVLVAGKG-QKHEML-----GASWVVVPGDLS-EGEYSLLDLRARKLETGN 226 (228)
T ss_dssp HCCSEEEECCSS-CEEEEE-----TTEEEEECCBGG-GTEEEEEETTTTEEEEEE
T ss_pred hCCCEEEEcccc-cCcccc-----CCceEEEecccC-CCceEEEEecceEeeecc
Confidence 458999999999 443222 225667666654 689999999886665554
No 24
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=48.21 E-value=57 Score=26.92 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=39.8
Q ss_pred CeEEEec-CCceEEEEec-ccccccccceEEEEEeeEecCCcEEEEEEEe
Q psy8633 87 DELILED-ELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 134 (327)
Q Consensus 87 D~l~LED-~sgRi~L~g~-~~~~~lvTG~Vvav~G~~~~~G~F~V~di~~ 134 (327)
-...|.| ....|.+.=. +-++.|--|.-|=+.|++.++|.|.+++++-
T Consensus 55 v~F~vtD~~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLa 104 (136)
T 1j6q_A 55 VQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGVLGEDGKLAATEVLA 104 (136)
T ss_dssp EEEEEECTTCCCEEEEECSCCTTSCCSSSEEEEEEEECSTTSEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEe
Confidence 3678899 7888888744 5678888898888899999899999999874
No 25
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=46.46 E-value=35 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=30.9
Q ss_pred CCeEEEecCCceEEEEec---ccccccccceEEEEEeeEecCC
Q psy8633 86 SDELILEDELQRIPLHGN---IDIHNQVTGVVVAIKGTPVGNG 125 (327)
Q Consensus 86 ~D~l~LED~sgRi~L~g~---~~~~~lvTG~Vvav~G~~~~~G 125 (327)
+|.+.+-|.||+|+++.+ -.-..+-.+--|=+.|.+..+.
T Consensus 52 ~d~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~ 94 (109)
T 1nnx_A 52 DDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDW 94 (109)
T ss_dssp TTEEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEEEET
T ss_pred CCeEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEECCCC
Confidence 688999999999999864 2234556677788899988765
No 26
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=41.01 E-value=62 Score=25.93 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=31.3
Q ss_pred eEEEecCCceEEEEecc--------cccccccceEEEEEeeEec-CCcE
Q psy8633 88 ELILEDELQRIPLHGNI--------DIHNQVTGVVVAIKGTPVG-NGKF 127 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~~--------~~~~lvTG~Vvav~G~~~~-~G~F 127 (327)
.+.|+|.||+|...-.. +...+..|.+|-|.|.+.. +|+-
T Consensus 56 ~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~ 104 (136)
T 4gop_B 56 AYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRR 104 (136)
T ss_dssp EEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEE
T ss_pred EEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEE
Confidence 78999999999887431 3567899999999999775 4543
No 27
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=39.51 E-value=55 Score=30.94 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=59.2
Q ss_pred cCceeEEEcCCCCCCCCCCC--CCCCCCc--CCc--CCccCCCCeeeecCC-cEEEECCEEEEEEcCCchhhhhccCCCC
Q psy8633 155 HSSIEVDLMPGEFDPANTTL--PQQPLHP--CLF--PEASKYSTFHPVTNP-YIFEMEGKLLMGTSGQPVSDIAKFSNLS 227 (327)
Q Consensus 155 ~~~i~V~lmPG~~Dp~~~~l--PQqplh~--~lf--~~~~~~~~~~~vtNP-~~~~i~g~~vlgtsGq~i~di~k~~~~~ 227 (327)
...+|+...|||||-..... .+..+.. ..| |... .....|- |.++.++++|++.+.+.- +....
T Consensus 189 ~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~----~~~~~~~~ys~~~g~~~~i~Ldt~~~-----~~~~~ 259 (426)
T 1xzw_A 189 VAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEA----SGSGDPLWYAIKRASAHIIVLSSYSG-----FVKYS 259 (426)
T ss_dssp HTTSCEECCCCGGGCCCBGGGTBCSTTHHHHHHSCCCCGG----GTCSSTTSEEEEETTEEEEECCTTSC-----CSTTS
T ss_pred HhcCCEEEeccccccccCCccccccCChhheEEEeCCccc----CCCCCCCeEEEEECCEEEEEeeCccc-----CCCCH
Confidence 45789999999999765310 0111110 001 1000 0011222 457889999999886531 12234
Q ss_pred ChHHHHHHHHhcccCCCCCCCce-----ecCcCCC---CC---------CeeecCCCcEEEcCCcccccee
Q psy8633 228 NPLDILEYTLRCGHVAPTAPDTL-----ACYPFYD---ND---------PMIIESCPDVYFTGNQSKFETK 281 (327)
Q Consensus 228 ~~l~~m~~~L~~rHlaPtaPdtl-----~~~P~~~---~D---------pfvi~~~Phv~f~Gn~~~f~~~ 281 (327)
..++.|+..|+.-.- ..+|=.+ |.|.... .| +++-+.-.+++++||.|.++-.
T Consensus 260 ~Q~~WL~~~L~~~~~-~~~~w~Iv~~H~P~~~~~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~~~r~ 329 (426)
T 1xzw_A 260 PQYKWFTSELEKVNR-SETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERS 329 (426)
T ss_dssp HHHHHHHHHHHHCCT-TTCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTTCSEEEECSSSSEEEE
T ss_pred HHHHHHHHHHHhhhh-cCCCEEEEEeccCceeCCCcccCCCHHHHHHHHHHHHHhCCCEEEEcChhhheee
Confidence 567888888865110 0111000 1111100 01 2222345789999999988754
No 28
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=37.16 E-value=40 Score=27.88 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=39.1
Q ss_pred eEEEecCCceEEEEec-ccccccccceEEEEEeeEecCCcEEEEEEE
Q psy8633 88 ELILEDELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVC 133 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~-~~~~~lvTG~Vvav~G~~~~~G~F~V~di~ 133 (327)
...|.|....|.+.=. +-++.|--|.-|=+.|++.++|.|.+++++
T Consensus 52 ~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVL 98 (136)
T 1sr3_A 52 TFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELEKGNHILAKEVL 98 (136)
T ss_dssp EEEEECSSCEEEEEEESCCCTTCCTTSEEEEEEEECSSSEEEESSCB
T ss_pred EEEEEeCCcEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEE
Confidence 6788999888888744 668888888888889999989999999976
No 29
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=34.25 E-value=53 Score=26.23 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=30.6
Q ss_pred eEEEecCCc-eEEEEecc-------cccccccceEEEEEeeEec-CCc
Q psy8633 88 ELILEDELQ-RIPLHGNI-------DIHNQVTGVVVAIKGTPVG-NGK 126 (327)
Q Consensus 88 ~l~LED~sg-Ri~L~g~~-------~~~~lvTG~Vvav~G~~~~-~G~ 126 (327)
.+.|+|.|| +|...-.. +...+..|..|-|.|.+.. +|+
T Consensus 51 ~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g~ 98 (132)
T 3kdf_D 51 VYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNK 98 (132)
T ss_dssp EEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETTE
T ss_pred EEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECCE
Confidence 789999999 99997431 2567889999999999775 454
No 30
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=31.73 E-value=34 Score=28.54 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=28.3
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCcCCcCCccCCCCeeeecCCcEEE-ECCEEEEEEcCCch
Q psy8633 158 IEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFE-MEGKLLMGTSGQPV 217 (327)
Q Consensus 158 i~V~lmPG~~Dp~~~~lPQqplh~~lf~~~~~~~~~~~vtNP~~~~-i~g~~vlgtsGq~i 217 (327)
.++.+++||||.....+ ...|.+ +..-.+++ ++|.+++.+||-..
T Consensus 72 ~~~~~v~GNhD~~~~~~------------~~~~~~---l~~~~~l~~~~~~~i~~~H~~~~ 117 (195)
T 1xm7_A 72 GRKILVMGNHDKDKESL------------KEYFDE---IYDFYKIIEHKGKRILLSHYPAK 117 (195)
T ss_dssp SEEEEECCTTCCCHHHH------------TTTCSE---EESSEEEEEETTEEEEEESSCSS
T ss_pred CCEEEEeCCCCCchhhh------------hhhhhc---hhHHHHHHhcCCcEEEEEccCCc
Confidence 47999999999743100 011211 22334566 89999999999653
No 31
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=30.44 E-value=48 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=28.7
Q ss_pred eEEEecCCceEEEEec-ccccccccceEEEEEeeEec
Q psy8633 88 ELILEDELQRIPLHGN-IDIHNQVTGVVVAIKGTPVG 123 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~-~~~~~lvTG~Vvav~G~~~~ 123 (327)
++.+-|+||+|++.-. .+.+.+-.|-+|=+.+...+
T Consensus 65 ~~lVgDeTG~I~ftlW~e~~~~l~~Gd~v~i~na~v~ 101 (145)
T 1wjj_A 65 ECLIGDETGCILFTARNDQVDLMKPGATVILRNSRID 101 (145)
T ss_dssp EEEEECSSCEEEEEECTTHHHHTCTTCEEEEEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCcCcCCCCCEEEEeccEEE
Confidence 5899999999999965 34556778999999886543
No 32
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=26.70 E-value=91 Score=30.40 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=35.3
Q ss_pred eEEEecCCceEEEEeccc---------ccccccceEEEEEeeEecC----CcEE--EEEEEecC
Q psy8633 88 ELILEDELQRIPLHGNID---------IHNQVTGVVVAIKGTPVGN----GKFK--VSDVCYAT 136 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~~~---------~~~lvTG~Vvav~G~~~~~----G~F~--V~di~~p~ 136 (327)
-+.|-|.+|.|.++-+-+ ...|-.|-+|+|.|.+... |.++ |+++-.-+
T Consensus 36 Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~vl~ 99 (438)
T 3nem_A 36 FLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLN 99 (438)
T ss_dssp EEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEE
T ss_pred EEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEEEEe
Confidence 467999999999885411 3468889999999998764 5555 46665533
No 33
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=25.84 E-value=70 Score=24.86 Aligned_cols=38 Identities=11% Similarity=0.274 Sum_probs=30.8
Q ss_pred ecCCCCcchHHHHHhhccCCCCCCCCCccCCCCeEEEecCCceEEEEec
Q psy8633 55 KHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGN 103 (327)
Q Consensus 55 k~m~lkPsiL~e~~~e~~~~~~~~~~~y~~~~D~l~LED~sgRi~L~g~ 103 (327)
|..+|=|+|.+++.++.- ..+|.+++|-+||+|+=.|.
T Consensus 46 k~l~lg~~i~e~L~kekV-----------~~GDVI~Id~~sG~V~klGR 83 (95)
T 2cqa_A 46 TIYDLGTKMIESLTKDKV-----------QAGDVITIDKATGKISKLGR 83 (95)
T ss_dssp EEEEECSHHHHHHHHTTC-----------CTTSEEEEETTTTEEEEEEC
T ss_pred EEEeCCHHHHHHHHHcCc-----------eeCCEEEEEccCCEEEEEEE
Confidence 345666999999988732 34899999999999999996
No 34
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=25.73 E-value=60 Score=28.34 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=35.4
Q ss_pred ecCCCcE--EEcCCccccceeEEeecCCceEEEEecCCCC----CCCeEEEEeCCCCcEEEEEEc
Q psy8633 263 IESCPDV--YFTGNQSKFETKTIEIEKDKNVRLISVPDFF----SSRTVAILNLSTLECHSLVVE 321 (327)
Q Consensus 263 i~~~Phv--~f~Gn~~~f~~~~~~~~~~~~v~lv~vP~F~----~t~~~vlvnl~tl~~~~v~F~ 321 (327)
+.+.++| +|+||.|...... +...+.+++.|+.. ..+...++++..-..+...++
T Consensus 252 l~~~~~v~~~~~GH~H~~~~~~----~~~g~~~i~~~~~~~~~~~~~~y~~v~~~~~~~~~~~~~ 312 (322)
T 2nxf_A 252 LRSHQSVLCFIAGHDHDGGRCT----DSSGAQHITLEGVIETPPHSHAFATAYLYEDRMVMKGRG 312 (322)
T ss_dssp HHTCTTEEEEEECSCTTCEEEE----CTTSCEEEECCCGGGCCTTSCEEEEEEECSSEEEEEEEE
T ss_pred HhcCCCeEEEEcCCcCCCCcee----ccCCceEEEecchhhCCCCCCcEEEEEEECCeEEEEecc
Confidence 4555555 9999999887654 12347788888774 345567777765444444443
No 35
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=24.64 E-value=1.6e+02 Score=27.04 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=54.5
Q ss_pred cEEEECCEEEEEEcCCchhhhhccCCCCChHHHHHHHHhcccCCCCCCCceecC--cCCCCCCe--------------ee
Q psy8633 200 YIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACY--PFYDNDPM--------------II 263 (327)
Q Consensus 200 ~~~~i~g~~vlgtsGq~i~di~k~~~~~~~l~~m~~~L~~rHlaPtaPdtl~~~--P~~~~Dpf--------------vi 263 (327)
..++++|++|.|+.+.+-..-..+. ++...++++ +|.-+ |...|-|-++ |+.-.|-. .|
T Consensus 167 ~~~~i~Gl~i~Gsp~tP~~~~~~f~-~~~~~~~~~---~~~~i-p~~~dILvTH~PP~g~~D~~~~~~~~~G~~~L~~~i 241 (296)
T 3rl5_A 167 SEVTVKGFRIYGAPWTPWFNGWGFN-LPRGQSLLD---KWNLI-PEGTDILMTHGPPLGFRDWVPKELQRVGCVELLNTV 241 (296)
T ss_dssp EEEEETTEEEEEECCBCC--CCTTB-CCTTHHHHH---HHTTS-CTTCSEEEESSCBTTSSCEEGGGTEECSBHHHHHHH
T ss_pred CcEEECCEEEEEecCCCCCCCcCCC-cchHHHHHH---HHhhC-CCCCeEEEECCCccccccccccccCcCChHHHHHHH
Confidence 4567899999997776543211111 111112222 34433 5444444332 33323321 22
Q ss_pred --cCCCcEEEcCCcccc-ceeEEeecCCceEEEEecCCCCC----CCeEEEEeCCC
Q psy8633 264 --ESCPDVYFTGNQSKF-ETKTIEIEKDKNVRLISVPDFFS----SRTVAILNLST 312 (327)
Q Consensus 264 --~~~Phv~f~Gn~~~f-~~~~~~~~~~~~v~lv~vP~F~~----t~~~vlvnl~t 312 (327)
+.-|++.++||.|.. +.... ..+.+|+..+... ....+++||..
T Consensus 242 ~~~~~p~l~v~GH~H~~~~~~~~-----g~t~vvNpGs~~~~~~~~n~p~v~dl~~ 292 (296)
T 3rl5_A 242 QRRVRPKLHVFGGIHEGYGTMTD-----GYTTYINASTCTVSFQPTNPPIIFDLPN 292 (296)
T ss_dssp HHTTCCSEEEECSCGGGCEEEEC-----SSCEEEECBCSCTTSCCCSCCEEEEEEC
T ss_pred HHhcCCCEEEECCccCCCceEEE-----CCEEEEECCcCCcCcCCCCCCEEEEecC
Confidence 356999999999974 33221 2367777766543 46667777653
No 36
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=23.72 E-value=1.3e+02 Score=27.04 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=32.0
Q ss_pred eEEEecCCc-eEEEEecc-------cccccccceEEEEEeeEec-CCcEEE
Q psy8633 88 ELILEDELQ-RIPLHGNI-------DIHNQVTGVVVAIKGTPVG-NGKFKV 129 (327)
Q Consensus 88 ~l~LED~sg-Ri~L~g~~-------~~~~lvTG~Vvav~G~~~~-~G~F~V 129 (327)
.+.|+|.|| +|...-.. +...+..|.+|-|.|.+.. +|+..+
T Consensus 91 ~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi 141 (270)
T 2pi2_A 91 VYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSL 141 (270)
T ss_dssp EEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEE
Confidence 799999999 89887541 2467899999999999765 455433
No 37
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=20.60 E-value=1.1e+02 Score=30.65 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=35.4
Q ss_pred eEEEecCCceEEEEecc---c------ccccccceEEEEEeeEec--CCcEE--EEEEEecC
Q psy8633 88 ELILEDELQRIPLHGNI---D------IHNQVTGVVVAIKGTPVG--NGKFK--VSDVCYAT 136 (327)
Q Consensus 88 ~l~LED~sgRi~L~g~~---~------~~~lvTG~Vvav~G~~~~--~G~F~--V~di~~p~ 136 (327)
-+.|-|.||+|.++-+- . ...+-.|-+|+|.|.+.. .|.++ |++|-.-+
T Consensus 106 Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs 167 (529)
T 4ex5_A 106 FATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLA 167 (529)
T ss_dssp EEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred EEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence 47799999999998541 1 235788999999999765 46655 46666533
Done!