Your job contains 1 sequence.
>psy8633
MIIESCPDVYFTGNQSKFETKTIEIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLK
PNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGT
PVGNGKFKVSDVCYATPVFNPRTTLSNNENKYVNHSSIEVDLMPGEFDPANTTLPQQPLH
PCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLRCG
HVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFF
SSRTVAILNLSTLECHSLVVEDLTEER
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8633
(327 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030616-157 - symbol:pold2 "polymerase (DNA ... 465 7.5e-76 2
MGI|MGI:1097163 - symbol:Pold2 "polymerase (DNA directed)... 490 2.0e-73 2
RGD|1304954 - symbol:Pold2 "polymerase (DNA directed), de... 486 5.3e-73 2
UNIPROTKB|P49005 - symbol:POLD2 "DNA polymerase delta sub... 490 6.7e-73 2
UNIPROTKB|P49004 - symbol:POLD2 "DNA polymerase delta sub... 488 1.4e-72 2
UNIPROTKB|H9GW60 - symbol:POLD2 "Uncharacterized protein"... 493 2.9e-72 2
UNIPROTKB|F1SSF8 - symbol:POLD2 "Uncharacterized protein"... 482 4.7e-72 2
FB|FBgn0027903 - symbol:CG12018 species:7227 "Drosophila ... 452 2.9e-64 2
UNIPROTKB|F8W8R3 - symbol:POLD2 "DNA polymerase delta sub... 404 7.7e-64 2
TAIR|locus:2060010 - symbol:POLD2 "DNA polymerase delta s... 453 2.6e-61 2
DICTYBASE|DDB_G0281641 - symbol:polD2 "DNA polymerase del... 393 4.2e-53 2
POMBASE|SPAC27E2.05 - symbol:cdc1 "DNA polymerase delta s... 373 1.4e-46 2
GENEDB_PFALCIPARUM|PFC0340w - symbol:PFC0340w "DNA polyme... 298 5.9e-43 2
CGD|CAL0003049 - symbol:HYS2 species:5476 "Candida albica... 306 6.0e-37 2
SGD|S000003766 - symbol:POL31 "Subunit of DNA polymerase ... 229 1.5e-29 2
WB|WBGene00008722 - symbol:F12F6.7 species:6239 "Caenorha... 242 4.8e-28 2
UNIPROTKB|C9JLE1 - symbol:POLD2 "DNA polymerase delta sub... 265 6.1e-23 1
ASPGD|ASPL0000009421 - symbol:AN10470 species:162425 "Eme... 184 6.8e-22 3
UNIPROTKB|C9JHC7 - symbol:POLD2 "DNA polymerase delta sub... 186 2.9e-17 2
UNIPROTKB|C9J8Z7 - symbol:POLD2 "DNA polymerase delta sub... 208 9.1e-17 1
UNIPROTKB|C9IZD2 - symbol:POLD2 "DNA polymerase delta sub... 193 5.1e-15 1
UNIPROTKB|H7C1B3 - symbol:POLD2 "DNA polymerase delta sub... 160 2.7e-11 1
>ZFIN|ZDB-GENE-030616-157 [details] [associations]
symbol:pold2 "polymerase (DNA directed), delta 2,
regulatory subunit" species:7955 "Danio rerio" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 ZFIN:ZDB-GENE-030616-157
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 CTD:5425
HOVERGEN:HBG051396 KO:K02328 InterPro:IPR024826 PANTHER:PTHR10416
EMBL:AL591213 EMBL:BC066617 EMBL:BC171676 EMBL:BC171678
IPI:IPI00507461 RefSeq:NP_998468.1 UniGene:Dr.80429 STRING:Q90X40
GeneID:796456 KEGG:dre:796456 InParanoid:Q90X40 NextBio:20932616
Uniprot:Q90X40
Length = 467
Score = 465 (168.7 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
Identities = 82/171 (47%), Positives = 119/171 (69%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPG++DP N TLPQQPLH C+FP + + T V NPY ++G +GT+GQ
Sbjct: 286 ASVSVDVMPGQYDPTNYTLPQQPLHRCMFPLSIPFPTLQLVINPYQAIVDGVRFLGTAGQ 345
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI K+S++ + L+ILE TLR H+APTAPDTL CYPFY DP I+E CP VYF+GN
Sbjct: 346 NVSDIGKYSSVDDHLEILESTLRLRHLAPTAPDTLGCYPFYQKDPFILEECPHVYFSGNA 405
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVEDLTEE 326
+++K + + ++V L+++P+F S++T ++NL TLEC + + E
Sbjct: 406 PSYQSKRVTGPEGQDVLLVAIPEFSSTQTACLVNLRTLECEPISFSSFSTE 456
Score = 318 (117.0 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
Identities = 68/122 (55%), Positives = 82/122 (67%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V + KL DL EECVI+GT+FKH +L+P+IL+EISEE L+PQP ++S SD
Sbjct: 72 GTEVPIRKLCDLQMG--EECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSD 129
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA-TPVFNPRTTLS 146
ELILEDELQRI L GNID VTG V+AIKG +GKF V D C A P PR LS
Sbjct: 130 ELILEDELQRIKLEGNIDAPKFVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLS 189
Query: 147 NN 148
++
Sbjct: 190 SD 191
>MGI|MGI:1097163 [details] [associations]
symbol:Pold2 "polymerase (DNA directed), delta 2, regulatory
subunit" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISO] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 MGI:MGI:1097163
GO:GO:0005634 GO:GO:0003677 EMBL:CH466574 GO:GO:0006261
EMBL:AL627069 GO:GO:0003887 CTD:5425 eggNOG:COG1311
GeneTree:ENSGT00390000006780 HOGENOM:HOG000189057
HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG OrthoDB:EOG41NTKZ
InterPro:IPR024826 PANTHER:PTHR10416 ChiTaRS:POLD2 EMBL:Z72486
EMBL:BC003342 IPI:IPI00132795 RefSeq:NP_032920.2 UniGene:Mm.35788
ProteinModelPortal:O35654 SMR:O35654 IntAct:O35654 STRING:O35654
PhosphoSite:O35654 PaxDb:O35654 PRIDE:O35654 DNASU:18972
Ensembl:ENSMUST00000102922 GeneID:18972 KEGG:mmu:18972
InParanoid:Q99J61 NextBio:295324 Bgee:O35654 Genevestigator:O35654
GermOnline:ENSMUSG00000020471 Uniprot:O35654
Length = 469
Score = 490 (177.5 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 89/163 (54%), Positives = 117/163 (71%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
F +K I +D+ V L++VPDF S++T ++NL +L C +
Sbjct: 408 PSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPI 450
Score = 270 (100.1 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 54/108 (50%), Positives = 73/108 (67%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+EISEE LVPQP + ++ D
Sbjct: 74 GSRVEVKKLCELQPG--EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +G+F+V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFA 179
>RGD|1304954 [details] [associations]
symbol:Pold2 "polymerase (DNA directed), delta 2, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0043625 "delta DNA polymerase complex" evidence=IC] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007185 Pfam:PF04042
RGD:1304954 GO:GO:0003677 GO:GO:0006261 GO:GO:0003887 GO:GO:0043625
CTD:5425 eggNOG:COG1311 GeneTree:ENSGT00390000006780
HOGENOM:HOG000189057 HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ InterPro:IPR024826 PANTHER:PTHR10416
EMBL:BC079267 IPI:IPI00198398 RefSeq:NP_001013068.1
UniGene:Rn.22989 STRING:Q6AXY4 PRIDE:Q6AXY4
Ensembl:ENSRNOT00000019288 GeneID:289758 KEGG:rno:289758
UCSC:RGD:1304954 InParanoid:Q6AXY4 NextBio:630310
Genevestigator:Q6AXY4 GermOnline:ENSRNOG00000014098 Uniprot:Q6AXY4
Length = 469
Score = 486 (176.1 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 88/163 (53%), Positives = 116/163 (71%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ Y+T VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFAECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
F +K I +D+ V L++VPDF S++T ++NL L C +
Sbjct: 408 PSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQPI 450
Score = 270 (100.1 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 54/108 (50%), Positives = 73/108 (67%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+EISEE L+PQP + ++ D
Sbjct: 74 GSQVEVKKLCELQPG--EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +GKF+V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFA 179
>UNIPROTKB|P49005 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_216
InterPro:IPR007185 Pfam:PF04042 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0006284 GO:GO:0003677 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271 GO:GO:0003887
GO:GO:0032201 GO:GO:0006297 CTD:5425 eggNOG:COG1311
HOGENOM:HOG000189057 HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ InterPro:IPR024826 PANTHER:PTHR10416 EMBL:U21090
EMBL:AF239710 EMBL:AY116646 EMBL:BC000459 IPI:IPI00025616
PIR:I38950 RefSeq:NP_001120690.1 RefSeq:NP_001243808.1
RefSeq:NP_006221.2 UniGene:Hs.306791 UniGene:Hs.740138 PDB:3E0J
PDBsum:3E0J ProteinModelPortal:P49005 SMR:P49005 IntAct:P49005
STRING:P49005 PhosphoSite:P49005 DMDM:1352307 PaxDb:P49005
PeptideAtlas:P49005 PRIDE:P49005 DNASU:5425 Ensembl:ENST00000406581
Ensembl:ENST00000452185 GeneID:5425 KEGG:hsa:5425 UCSC:uc003tkf.4
GeneCards:GC07M044120 HGNC:HGNC:9176 HPA:HPA026745 MIM:600815
neXtProt:NX_P49005 PharmGKB:PA33497 InParanoid:P49005
PhylomeDB:P49005 ChEMBL:CHEMBL2763 ChiTaRS:POLD2
EvolutionaryTrace:P49005 GenomeRNAi:5425 NextBio:20989
ArrayExpress:P49005 Bgee:P49005 CleanEx:HS_POLD2
Genevestigator:P49005 GermOnline:ENSG00000106628 Uniprot:P49005
Length = 469
Score = 490 (177.5 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 88/163 (53%), Positives = 117/163 (71%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
F +K I +D+ V L++VPDF +++T ++NL +L C +
Sbjct: 408 PSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI 450
Score = 265 (98.3 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 53/108 (49%), Positives = 72/108 (66%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GSGVGVKKLCELQPE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
>UNIPROTKB|P49004 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9913
"Bos taurus" [GO:0006260 "DNA replication" evidence=TAS]
[GO:0005634 "nucleus" evidence=IC] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 EMBL:U21091 EMBL:BC113315
IPI:IPI00694189 PIR:I46076 RefSeq:NP_776853.2 UniGene:Bt.5282
IntAct:P49004 STRING:P49004 PRIDE:P49004 Ensembl:ENSBTAT00000016237
GeneID:281991 KEGG:bta:281991 CTD:5425 eggNOG:COG1311
GeneTree:ENSGT00390000006780 HOGENOM:HOG000189057
HOVERGEN:HBG051396 InParanoid:P49004 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ BindingDB:P49004 ChEMBL:CHEMBL2762
NextBio:20805859 InterPro:IPR024826 PANTHER:PTHR10416
Uniprot:P49004
Length = 469
Score = 488 (176.8 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 87/163 (53%), Positives = 118/163 (72%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TL+ H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
F +K I+ +D+ V L++VPDF +++T ++NL +L C +
Sbjct: 408 PSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPI 450
Score = 264 (98.0 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 54/108 (50%), Positives = 72/108 (66%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GSGVLVKKLCELQPG--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
ELILEDELQRI L G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 132 ELILEDELQRIKLEGTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFA 179
>UNIPROTKB|H9GW60 [details] [associations]
symbol:POLD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00390000006780 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 Ensembl:ENSCAFT00000004694 Uniprot:H9GW60
Length = 511
Score = 493 (178.6 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 88/163 (53%), Positives = 118/163 (72%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 330 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 389
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CYPFY NDP I CP VYF GN
Sbjct: 390 NVSDIFRYSSMEDHLEILEWTLRIRHISPTAPDTLGCYPFYKNDPFIFPDCPHVYFCGNT 449
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
+F +K +D+ V L++VPDF +++T ++NL +L C +
Sbjct: 450 PQFGSKIFRGPEDQRVLLVAVPDFSTTQTACLVNLRSLACQPI 492
Score = 256 (95.2 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G + + KL +L E+C ++GTLFK L+P+IL+EISEE L+PQP + ++ D
Sbjct: 116 GDGIQIKKLCELQPG--EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDD 173
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
+L+LEDELQRI L G+ID VTG V+A+ G+ +GKF V D C+A
Sbjct: 174 QLVLEDELQRIKLEGSIDASKLVTGTVLAVLGSVRDSGKFLVEDHCFA 221
>UNIPROTKB|F1SSF8 [details] [associations]
symbol:POLD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 GeneTree:ENSGT00390000006780
OMA:HWGSGVG InterPro:IPR024826 PANTHER:PTHR10416 EMBL:CU928907
Ensembl:ENSSSCT00000018235 Uniprot:F1SSF8
Length = 469
Score = 482 (174.7 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 87/163 (53%), Positives = 115/163 (70%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
V DI ++S + + L+ILE+TL+ H++PTAPDTL CYPFY DP I CP VYF GN
Sbjct: 348 NVGDIFRYSGMEDHLEILEWTLQIRHISPTAPDTLGCYPFYKTDPFIFLECPHVYFCGNT 407
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
F +K I +D+ V L++VPDF S++T ++NL +L C +
Sbjct: 408 PSFGSKIIRGPEDQTVLLVAVPDFSSTQTACLVNLRSLTCQPI 450
Score = 265 (98.3 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 55/108 (50%), Positives = 73/108 (67%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK QL+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GGGVVVKKLCELQPG--EKCCVVGTLFKAMQLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
ELILEDELQRI L G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 132 ELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFA 179
>FB|FBgn0027903 [details] [associations]
symbol:CG12018 species:7227 "Drosophila melanogaster"
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;NAS]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006260 "DNA replication" evidence=IEA;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005634 GO:GO:0005875 EMBL:AE014296 GO:GO:0007052
GO:GO:0003677 GO:GO:0006260 GO:GO:0006974 GO:GO:0003887
eggNOG:COG1311 GeneTree:ENSGT00390000006780 KO:K02328
InterPro:IPR024826 PANTHER:PTHR10416 OMA:CATGCCV EMBL:AF160903
EMBL:AY113311 RefSeq:NP_647659.1 UniGene:Dm.819
ProteinModelPortal:Q9W088 SMR:Q9W088 DIP:DIP-20333N
MINT:MINT-1686297 STRING:Q9W088 PaxDb:Q9W088 PRIDE:Q9W088
EnsemblMetazoa:FBtr0072775 GeneID:38228 KEGG:dme:Dmel_CG12018
UCSC:CG12018-RA FlyBase:FBgn0027903 InParanoid:Q9W088
OrthoDB:EOG4NCJV7 PhylomeDB:Q9W088 ChiTaRS:CG12018 GenomeRNAi:38228
NextBio:807634 Bgee:Q9W088 GermOnline:CG12018 Uniprot:Q9W088
Length = 431
Score = 452 (164.2 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 80/159 (50%), Positives = 113/159 (71%)
Query: 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQP 216
S+ VD+MPG +DPAN LPQQP H C+FP+A++ +TF VTNPY ++ L++GTSGQ
Sbjct: 263 SLPVDIMPGPYDPANFMLPQQPFHKCMFPQAAQLATFQAVTNPYSCRLDEALVVGTSGQN 322
Query: 217 VSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQS 276
VSD+ + ++L + L+ L TL GHVAPTAPDTLACYP+ ++DP I+ CP VY+ GN
Sbjct: 323 VSDLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACYPYIESDPFILRECPHVYYAGNCE 382
Query: 277 KFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLEC 315
F T+ E + K RL+ VP F +++VA+++L TL+C
Sbjct: 383 SFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTLDC 421
Score = 221 (82.9 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 44/107 (41%), Positives = 64/107 (59%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G + KL +L C++IGT+FKHQ KP+IL++ISEE +L PQP ++ D
Sbjct: 51 GNKEPIKKLCELRGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPED 110
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 134
+++LEDELQR+ L G ++ TGVV A G +G F V D+ +
Sbjct: 111 KIVLEDELQRVRLQGKLNGQLLATGVVCAALGGTDSDGFFNVEDILF 157
>UNIPROTKB|F8W8R3 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 InterPro:IPR024826 PANTHER:PTHR10416 HGNC:HGNC:9176
ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00925787
ProteinModelPortal:F8W8R3 SMR:F8W8R3 Ensembl:ENST00000223361
ArrayExpress:F8W8R3 Bgee:F8W8R3 Uniprot:F8W8R3
Length = 455
Score = 404 (147.3 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
Identities = 80/163 (49%), Positives = 109/163 (66%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G +GTSGQ
Sbjct: 288 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQ 347
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
VSDI ++S++ + L+ILE+TLR H++PTAPDTL CP VYF GN
Sbjct: 348 NVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTL--------------ECPHVYFCGNT 393
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
F +K I +D+ V L++VPDF +++T ++NL +L C +
Sbjct: 394 PSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI 436
Score = 265 (98.3 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
Identities = 53/108 (49%), Positives = 72/108 (66%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GSGVGVKKLCELQPE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
>TAIR|locus:2060010 [details] [associations]
symbol:POLD2 "DNA polymerase delta small subunit"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA;RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0007020 "microtubule nucleation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0016570 "histone
modification" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
InterPro:IPR007185 Pfam:PF04042 EMBL:CP002685 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 KO:K02328 OMA:HWGSGVG
InterPro:IPR024826 PANTHER:PTHR10416 IPI:IPI00975273
RefSeq:NP_181742.2 UniGene:At.42746 ProteinModelPortal:F4IM00
SMR:F4IM00 PRIDE:F4IM00 EnsemblPlants:AT2G42120.1 GeneID:818812
KEGG:ath:AT2G42120 Uniprot:F4IM00
Length = 441
Score = 453 (164.5 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 81/163 (49%), Positives = 111/163 (68%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
+ + VD+MPG DPAN LPQQPL+ CLFP +S Y+TF TNP+ F+++ +GTSGQ
Sbjct: 270 AGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQ 329
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQ 275
+ D+ K+S + LD +E TLR H+APTAP+TL CYPF D DP +IE+CP VYF GNQ
Sbjct: 330 NIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQ 389
Query: 276 SKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSL 318
K++ + I+ + + VRLI +P F + +NL LECH+L
Sbjct: 390 DKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECHTL 432
Score = 192 (72.6 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 46/110 (41%), Positives = 63/110 (57%)
Query: 45 EECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGN- 103
+EC+I+GTLFKH +LKP +L E S+E + P + +F+ D LILEDE R+ L G+
Sbjct: 74 KECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRVKLAGSA 133
Query: 104 IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFNPRTTLSNNENKYV 153
+ VTGVVVA+ G G+F V DV A + E+KYV
Sbjct: 134 LSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYV 183
>DICTYBASE|DDB_G0281641 [details] [associations]
symbol:polD2 "DNA polymerase delta subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 dictyBase:DDB_G0281641
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000042 GO:GO:0003887 eggNOG:COG1311 KO:K02328
InterPro:IPR024826 PANTHER:PTHR10416 OMA:CATGCCV RefSeq:XP_640553.1
STRING:Q54TN8 EnsemblProtists:DDB0234234 GeneID:8623163
KEGG:ddi:DDB_G0281641 InParanoid:Q54TN8 Uniprot:Q54TN8
Length = 521
Score = 393 (143.4 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 72/158 (45%), Positives = 105/158 (66%)
Query: 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQP 216
++ VD++PG DP N +LPQ PL+ CLFP + + + TNPY ++ G+LL+GTSGQ
Sbjct: 345 TVPVDIIPGPNDPTNISLPQLPLNSCLFPFSIQNTNLTTCTNPYQSQIGGRLLLGTSGQN 404
Query: 217 VSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQS 276
+ + +++ N + + E TL H+APTAPDTL C DNDP +IE CPD+YF GNQ
Sbjct: 405 IENASRYMTYENKMSLTESTLIWRHLAPTAPDTLTCAAL-DNDPFVIEQCPDIYFVGNQD 463
Query: 277 KFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLE 314
FETK ++ D+ VRLI +P+F + T+ ++NL TL+
Sbjct: 464 HFETKLLKGPNDEIVRLIFIPNFSETNTIILVNLKTLD 501
Score = 174 (66.3 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 38/113 (33%), Positives = 68/113 (60%)
Query: 45 EECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTH-FVSDSDELILEDELQRIPLHGN 103
+EC++IGTL+K +LKPNILK +++ ++P P + F+ + D+L ED R+ L G+
Sbjct: 141 DECIMIGTLYKEMELKPNILKAYAQDRAMLPIPDNRESFIGEKDKLFFEDNTGRVKLIGS 200
Query: 104 ID-IHNQVTGVVVAIKGTPVGNGKFKVSDVCYA--TPVFNPRTTLSNNENKYV 153
+ + + VTG+ VAI G + + +F+V D+ + P + R S ++ Y+
Sbjct: 201 KEMVDSLVTGLNVAILGKGLPDAEFEVRDIVFPGIPPQPHSRDLESLKDDAYI 253
>POMBASE|SPAC27E2.05 [details] [associations]
symbol:cdc1 "DNA polymerase delta small subunit Cdc1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] InterPro:IPR007185 Pfam:PF04042
PomBase:SPAC27E2.05 GO:GO:0005829 EMBL:CU329670 GO:GO:0051301
GO:GO:0007067 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0000723
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0043625
eggNOG:COG1311 HOGENOM:HOG000189057 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 OMA:CATGCCV EMBL:Y12562 EMBL:Y12561 PIR:T38453
RefSeq:NP_594406.1 IntAct:P87324 STRING:P87324
EnsemblFungi:SPAC27E2.05.1 GeneID:2542083 KEGG:spo:SPAC27E2.05
OrthoDB:EOG4R273H NextBio:20803156 Uniprot:P87324
Length = 462
Score = 373 (136.4 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 76/191 (39%), Positives = 111/191 (58%)
Query: 125 GKFKVSDVCYATPVFNPRTTLSNNENKYVNHSSIEVDLMPGEFDPANTTLPQQPLHPCLF 184
GK KV Y T +NP T + SSI+V LMPG +D ++T LPQQPLHP L
Sbjct: 253 GKKKVKRYGYDTSAYNPNPTFQLDNFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHPALL 312
Query: 185 PEASKY--STFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLRCGHV 242
++ + S+ VTNP + ++ TSGQ ++D+ K+ + L +E TL H+
Sbjct: 313 TKSKVWLGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHI 372
Query: 243 APTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSS 302
PT+PDTL CYPF D D ++E PD+Y GNQ KF KT+ I + ++L+SVP+F +
Sbjct: 373 TPTSPDTLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGCKTV-INEGNRIQLVSVPEFRKT 431
Query: 303 RTVAILNLSTL 313
+ ++N+ TL
Sbjct: 432 GVLVLINMHTL 442
Score = 132 (51.5 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 34/121 (28%), Positives = 65/121 (53%)
Query: 39 LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD------ELILE 92
L+ E+C ++ T + LKPN++ ++++ +V + + +VS D E LE
Sbjct: 62 LDVKSDEDCWVVATAYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALE 121
Query: 93 DELQRIPLHGNIDIHNQ--VTGVVVAIKGTPVGNGKFKVSDVCYATPVFNPRTTLSNNEN 150
D+ RI G+ +++ VTGVV+A+ G G+F V DVC+ +F+ ++ +E+
Sbjct: 122 DDYGRIDCSGSF-LYDAGVVTGVVLAVLGHEDEQGRFVVVDVCFPG-IFSHSIPMTTDES 179
Query: 151 K 151
+
Sbjct: 180 Q 180
>GENEDB_PFALCIPARUM|PFC0340w [details] [associations]
symbol:PFC0340w "DNA polymerase delta small
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0003677 GO:GO:0006260
EMBL:AL844502 GO:GO:0003887 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 OMA:CATGCCV PIR:T18428 RefSeq:XP_001351155.1
ProteinModelPortal:O77321 PRIDE:O77321
EnsemblProtists:PFC0340w:mRNA GeneID:814397 KEGG:pfa:PFC0340w
EuPathDB:PlasmoDB:PF3D7_0308000 HOGENOM:HOG000284166
ProtClustDB:CLSZ2500465 Uniprot:O77321
Length = 498
Score = 298 (110.0 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 60/175 (34%), Positives = 103/175 (58%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQ 215
SSI +DLMPG+ DP+++ LPQQP F +A +++F VTNPY+F ++ + SG+
Sbjct: 326 SSIHIDLMPGDKDPSDSNLPQQPFPNIFFKKARNFNSFQCVTNPYLFSIDNINICCMSGE 385
Query: 216 PVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIE---SCPDVYFT 272
PV +I +S +N ++ L+ + ++PT+PDTL CYPF NDP + + P ++
Sbjct: 386 PVHNITSYSK-NNKMNALKLIAQSRILSPTSPDTLGCYPFTKNDPFCLNDDNTYPHIFIN 444
Query: 273 GNQSKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVEDLTEER 327
GN SK E + ++ + L+ +P+F S ++NL LE + ++ + E++
Sbjct: 445 GNCSKLEVQYMQDHNKQLPLLVCLPNFHISPKAFLINLKNLE-YKILTFQIDEDK 498
Score = 181 (68.8 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 45 EECVIIGTLFKHQQLKPNILKEISEELKLVPQP-QHTHFVSDSDELILEDELQRIPLHGN 103
E+C IGT+FK +L+P+IL E E+ ++ +TH D D L LEDE R+ L GN
Sbjct: 150 EKCYCIGTIFKKMELRPSILNEYLSEISILNNTINYTH---DEDILFLEDETARLKLEGN 206
Query: 104 IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFNPRTTLSN---NENKYV 153
I+ +TG+ V +KG + NG V ++ Y+ + P+ + N N++K++
Sbjct: 207 INSDFYITGLTVIVKGIGMSNGSLYVEEIIYS---YIPKLDIPNCISNDDKFI 256
>CGD|CAL0003049 [details] [associations]
symbol:HYS2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 CGD:CAL0003049 GO:GO:0003677
GO:GO:0006260 EMBL:AACQ01000012 GO:GO:0003887 eggNOG:COG1311
KO:K02328 InterPro:IPR024826 PANTHER:PTHR10416 EMBL:AACQ01000011
RefSeq:XP_721869.1 RefSeq:XP_722029.1 STRING:Q5AK60 GeneID:3636359
GeneID:3636441 KEGG:cal:CaO19.11442 KEGG:cal:CaO19.3960
Uniprot:Q5AK60
Length = 474
Score = 306 (112.8 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 70/174 (40%), Positives = 99/174 (56%)
Query: 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKY---STFHPVTNPYIFEMEGKLLMGTS 213
S+ V +MPG+ DPA LPQQPLH LF S + +TNP + + ++GTS
Sbjct: 301 SLPVAVMPGKNDPAEICLPQQPLHRSLFKNNSSLLDGNRLTRLTNPQWIDAQTVKILGTS 360
Query: 214 GQPVSDIAKF-----SNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMII-ESCP 267
GQ V DI K+ + ++I+E ++ + PTAPDTL CYP+ + DP I + P
Sbjct: 361 GQNVDDIQKYIVPKKDHQFTSIEIMENNIKWQNFVPTAPDTLYCYPYENYDPFIFSDDLP 420
Query: 268 DVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVE 321
VYF GNQ +F++K E + NVRLIS+P F S +L+L TLE + +E
Sbjct: 421 HVYFVGNQQQFDSKLFEHD-GVNVRLISIPKFKESGQFVLLDLDTLETEVVTIE 473
Score = 112 (44.5 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 47 CVIIGTLFKHQQLKPNILKEISEELK-LVPQPQHTHFVSDSDELI-LEDELQRIPLHG-N 103
C +IGT+F + K +IL ++ + ++P T+ D ++ LEDE R L+ N
Sbjct: 93 CWVIGTVFCDAKYKLDILNDVEKGTDDVLPLEPVTYVNEDEQPIVMLEDESGRAILNNDN 152
Query: 104 IDIHNQ-VTGVVVAIKGTPVGNGKFKVSDVCYATPVFNPRTTLSNNENK 151
N VTG +VA+ G + G F++ D+ Y P P+ L ENK
Sbjct: 153 FLAKNLLVTGCIVAVLGIEIQAGIFEIMDIAY--PDCAPQKPLPLGENK 199
>SGD|S000003766 [details] [associations]
symbol:POL31 "Subunit of DNA polymerase delta (polymerase
III)" species:4932 "Saccharomyces cerevisiae" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0006284 "base-excision repair"
evidence=TAS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006301 "postreplication repair" evidence=TAS]
[GO:0043625 "delta DNA polymerase complex" evidence=TAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=TAS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 SGD:S000003766 EMBL:BK006943 GO:GO:0006284
GO:GO:0003677 GO:GO:0006298 GO:GO:0006278 EMBL:X87611 GO:GO:0006289
GO:GO:0006301 GO:GO:0043137 GO:GO:0003887 GO:GO:0006272
GO:GO:0043625 eggNOG:COG1311 GeneTree:ENSGT00390000006780
HOGENOM:HOG000189057 KO:K02328 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 OrthoDB:EOG4R273H EMBL:D50324 EMBL:Z49506
PIR:S55194 RefSeq:NP_012539.1 ProteinModelPortal:P46957 SMR:P46957
DIP:DIP-2525N IntAct:P46957 MINT:MINT-477144 STRING:P46957
PaxDb:P46957 EnsemblFungi:YJR006W GeneID:853462 KEGG:sce:YJR006W
CYGD:YJR006w NextBio:974044 Genevestigator:P46957
GermOnline:YJR006W Uniprot:P46957
Length = 487
Score = 229 (85.7 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 47/119 (39%), Positives = 73/119 (61%)
Query: 203 EMEGKLLMGTSGQPVSDIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMI 262
E E K+ G S DI + LD++E T++ ++APTAPDTL CYP+ D DP +
Sbjct: 375 ESENKVEEGESNDFKDDI------EHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFV 428
Query: 263 IESCPDVYFTGNQSKFETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTLECHSLVVE 321
++ P VY NQ F T+ +EI KN+++ISVP+F S+ + +L+L TLE ++ ++
Sbjct: 429 LDKWPHVYIVANQPYFGTRVVEIG-GKNIKIISVPEFSSTGMIILLDLETLEAETVKID 486
Score = 150 (57.9 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 41/115 (35%), Positives = 61/115 (53%)
Query: 33 VLKLSD-LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQ--PQHTHFVSDSDEL 89
VLK L+ + C +G+++ + KPN+L E+ + P +T SDE+
Sbjct: 87 VLKKDKVLDIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEI 146
Query: 90 ILEDELQRIPLHGNIDIHNQ--VTGVVVAIKGTPVGNGKFKVSDVCYATPV-FNP 141
+LEDE R+ L G+ I + +TGVVV I G G F+V D+CY TP+ NP
Sbjct: 147 MLEDESGRVLLVGDF-IRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNP 200
Score = 139 (54.0 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEA-------SKYSTFHPVTNPYIFEMEGKLL 209
SI VD+MPG DP++ +LPQQP H LF ++ S + VTNPY F G +
Sbjct: 293 SISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESYFNGSNKEILNLVTNPYEFSYNGVDV 352
Query: 210 MGTSGQPVSDIAKFSNLSN 228
+ SG+ ++DI K+ SN
Sbjct: 353 LAVSGKNINDICKYVIPSN 371
>WB|WBGene00008722 [details] [associations]
symbol:F12F6.7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0040035 GO:GO:0003887 eggNOG:COG1311
GeneTree:ENSGT00390000006780 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 EMBL:Z73425 PIR:T20798 RefSeq:NP_502177.1
ProteinModelPortal:Q19366 IntAct:Q19366 STRING:Q19366 PaxDb:Q19366
EnsemblMetazoa:F12F6.7.1 EnsemblMetazoa:F12F6.7.2 GeneID:178077
KEGG:cel:CELE_F12F6.7 UCSC:F12F6.7.1 CTD:178077 WormBase:F12F6.7
HOGENOM:HOG000017939 InParanoid:Q19366 OMA:CATGCCV NextBio:899618
Uniprot:Q19366
Length = 451
Score = 242 (90.2 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 55/155 (35%), Positives = 80/155 (51%)
Query: 160 VDLMPGEFDPANTTLPQQPLHPCLFPEASKYST-FHPVTNPYIFEMEGKLLMGTSGQPVS 218
VD+ PG DP ++ P P+H P + VTNPY FE+ G +M SG+ VS
Sbjct: 287 VDVTPGVGDPCSSMWPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVS 346
Query: 219 DIAKFSNLSNPLDILEYTLRCGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKF 278
++ + S D +E ++ HVAP PDTL +P + DP+I++ P V GNQ
Sbjct: 347 ELLRTSLKWTGADAIENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHA 406
Query: 279 ETKTIEIEKDKNVRLISVPDFFSSRTVAILNLSTL 313
E + I I+ N ++ +P F +R LNLS L
Sbjct: 407 EFRHIPID-GSNCLVVCLPKFSKTRVACFLNLSDL 440
Score = 97 (39.2 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 39/148 (26%), Positives = 62/148 (41%)
Query: 24 EIEKGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFV 83
EI KGK +LSD + EE ++G + K +P+ILK + E K+
Sbjct: 55 EIGKGKFTHS-QLSDAKQD--EEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAE 111
Query: 84 SDS---------DELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 134
D D + LE + Q + L GNI + TG V + G G F V+ + +
Sbjct: 112 EDEVKRYAGSIEDRIELESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFHVNRLVW 171
Query: 135 ATPVFNPRTTLSNNENKYVNHSSIEVDL 162
+ V P+ + +V+ + DL
Sbjct: 172 PS-VKVPKKVAVDGTIAFVSGLDLTGDL 198
>UNIPROTKB|C9JLE1 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] GO:GO:0005634 GO:GO:0006261
HOGENOM:HOG000189057 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00927870
ProteinModelPortal:C9JLE1 SMR:C9JLE1 STRING:C9JLE1
Ensembl:ENST00000433715 ArrayExpress:C9JLE1 Bgee:C9JLE1
Uniprot:C9JLE1
Length = 220
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 53/108 (49%), Positives = 72/108 (66%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GSGVGVKKLCELQPE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 135
EL+LEDELQRI L G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
>ASPGD|ASPL0000009421 [details] [associations]
symbol:AN10470 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IEA] [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 GO:GO:0003887
HOGENOM:HOG000189057 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 EnsemblFungi:CADANIAT00004848 Uniprot:C8V6H5
Length = 538
Score = 184 (69.8 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 193 FHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNP---LD----------ILEYTLR- 238
F VTNP+ ++EG G+SGQ V D+ ++ + ++ +D ++E LR
Sbjct: 369 FDSVTNPWEGDVEGWRFWGSSGQNVDDVLRYLDFADEDGNVDMNGDTEARIRVMEAMLRW 428
Query: 239 -CGHVAPTAPDTLACYPFYDNDPMIIESCPDVYFTGNQSKFETKTIE 284
CG PTAPDTL YPF +DP ++ESCP ++F GNQ +F+T IE
Sbjct: 429 RCG--VPTAPDTLWSYPFQTHDPFVMESCPHLFFAGNQPQFKTAVIE 473
Score = 147 (56.8 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 157 SIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYST-------------FHPVTNPYIFE 203
SI + LMPGE DPAN LPQQP+H +FP + Y + F VTNP+ +
Sbjct: 320 SIPITLMPGESDPANFALPQQPIHRAMFPRSRAYCSAPPIGEDKVEPGWFDSVTNPWEGD 379
Query: 204 MEGKLLMGTSGQPVSDIAKFSNLSN 228
+EG G+SGQ V D+ ++ + ++
Sbjct: 380 VEGWRFWGSSGQNVDDVLRYLDFAD 404
Score = 132 (51.5 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 45 EECVIIGTLFKHQQLKPNILKEISEE-LKLVPQPQHTH---FVSDSDELILEDELQRIPL 100
E C + GT++ LKPNIL +++++ P P+ T+ + E++LEDE R+ L
Sbjct: 95 ELCWVAGTIYMEMPLKPNILDDLAKDNFTSAPPPRRTYQDPAHPELTEIMLEDESGRLRL 154
Query: 101 HGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDV 132
G+ + TGV++A+ GT NG F+ D+
Sbjct: 155 TGSKLQSVQLATGVIIAVLGTENANGDFEAIDI 187
Score = 42 (19.8 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 291 VRLISVPDFFSSRTVAILNLSTL 313
VRLIS+P F + + +++ TL
Sbjct: 499 VRLISLPKFRETGELVLVDTETL 521
>UNIPROTKB|C9JHC7 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 HOGENOM:HOG000189057
InterPro:IPR024826 PANTHER:PTHR10416 HGNC:HGNC:9176 ChiTaRS:POLD2
EMBL:AC006454 IPI:IPI00926735 ProteinModelPortal:C9JHC7 SMR:C9JHC7
STRING:C9JHC7 Ensembl:ENST00000436844 ArrayExpress:C9JHC7
Bgee:C9JHC7 Uniprot:C9JHC7
Length = 257
Score = 186 (70.5 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 156 SSIEVDLMPGEFDPANTTLPQQPLHPCLFPEASKYSTFHPVTNPYIFEMEG 206
+S+ VD+MPGEFDP N TLPQQPLHPC+FP A+ YST VTNPY ++G
Sbjct: 206 ASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDG 256
Score = 57 (25.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 112 GVVVAIKGTPVGNGKFKVSDVCYA 135
G V+A+ G+ +GKF V D C+A
Sbjct: 74 GTVLAVFGSVRDDGKFLVEDYCFA 97
>UNIPROTKB|C9J8Z7 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] GO:GO:0006261 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 HOGENOM:HOG000213747
IPI:IPI00927382 ProteinModelPortal:C9J8Z7 SMR:C9J8Z7 STRING:C9J8Z7
Ensembl:ENST00000456038 ArrayExpress:C9J8Z7 Bgee:C9J8Z7
Uniprot:C9J8Z7
Length = 155
Score = 208 (78.3 bits), Expect = 9.1e-17, P = 9.1e-17
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GSGVGVKKLCELQPE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNIDIHNQVT 111
EL+LEDELQRI L G ID+ VT
Sbjct: 132 ELVLEDELQRIKLKGTIDVSKLVT 155
>UNIPROTKB|C9IZD2 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] GO:GO:0006261 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00927214
ProteinModelPortal:C9IZD2 SMR:C9IZD2 STRING:C9IZD2
Ensembl:ENST00000418438 HOGENOM:HOG000213747 ArrayExpress:C9IZD2
Bgee:C9IZD2 Uniprot:C9IZD2
Length = 148
Score = 193 (73.0 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 28 GKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD 87
G V V KL +L E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ D
Sbjct: 74 GSGVGVKKLCELQPE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDD 131
Query: 88 ELILEDELQRIPLHGNI 104
EL+LEDELQRI L G I
Sbjct: 132 ELVLEDELQRIKLKGTI 148
>UNIPROTKB|H7C1B3 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 InterPro:IPR024826
PANTHER:PTHR10416 HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454
ProteinModelPortal:H7C1B3 Ensembl:ENST00000436400 Bgee:H7C1B3
Uniprot:H7C1B3
Length = 83
Score = 160 (61.4 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 177 QPLHPCLFPEASKYSTFHPVTNPYIFEMEGKLLMGTSGQPVSDIAKFSNLSNPLDI 232
QPLHPC+FP A+ YST VTNPY ++G +GTSGQ VSDI ++S++ + L+I
Sbjct: 28 QPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEI 83
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 327 327 0.00088 116 3 11 22 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 585 (62 KB)
Total size of DFA: 215 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.60u 0.13s 30.73t Elapsed: 00:00:02
Total cpu time: 30.60u 0.13s 30.73t Elapsed: 00:00:02
Start: Thu Aug 15 14:59:02 2013 End: Thu Aug 15 14:59:04 2013