RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8633
         (327 letters)



>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus,
           ba3 type [TaxId: 274]}
          Length = 122

 Score = 28.9 bits (64), Expect = 0.34
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 240 GHVAPTAPDTLACYPFYDNDPMIIESCP---DVYFTGNQSKFETKTIEIEKDKNVRLI 294
             V PT        P+ D    ++++ P    VY       ++   IE+ +   +   
Sbjct: 5   ERVDPTTVRQEG--PWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFK 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,220,966
Number of extensions: 57141
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)