BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8635
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17DI7|MED31_AEDAE Mediator of RNA polymerase II transcription subunit 31 OS=Aedes
aegypti GN=MED31 PE=3 SV=1
Length = 218
Score = 196 bits (497), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 102/116 (87%), Gaps = 2/116 (1%)
Query: 1 MANKGG--PETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWK 58
M KG E+ED Q+LRFQ ELEF+QCLANPNYL+FLAQRG+ KD F+NYLKYLL+WK
Sbjct: 5 MVGKGKLPVESEDAQKLRFQAELEFVQCLANPNYLHFLAQRGFFKDSNFINYLKYLLHWK 64
Query: 59 EPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
+P+ AKYLKYPMCLYFLDLLQYEHFRREIVN+QC KFIDDQ +LLWQHYTR+RT+L
Sbjct: 65 DPEMAKYLKYPMCLYFLDLLQYEHFRREIVNAQCCKFIDDQAILLWQHYTRRRTRL 120
>sp|Q8IH24|MED31_DROME Mediator of RNA polymerase II transcription subunit 31
OS=Drosophila melanogaster GN=MED31 PE=1 SV=2
Length = 204
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 110/161 (68%), Gaps = 22/161 (13%)
Query: 3 NKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQY 62
K E+E+ Q+ R+QIELEF+QCL+NPNYLNFLAQRG+ KD++F+NYLKYL YWKEP Y
Sbjct: 8 GKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDY 67
Query: 63 AKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLN------ 116
AKYL YPMCLYFLDLLQYEHFRREIVNSQC KFIDDQ +L WQHYTRKR KL+
Sbjct: 68 AKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLIENVTAAQ 127
Query: 117 ----------------EAAQNNISGAPTMERRSNLSPNDIQ 141
EAA S APT + S D Q
Sbjct: 128 QQQQQLQQQQQQANGMEAATGGESAAPTPNVNGSASTADSQ 168
>sp|Q28FE2|MED31_XENTR Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus
tropicalis GN=med31 PE=2 SV=2
Length = 128
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 108/125 (86%), Gaps = 4/125 (3%)
Query: 5 GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
ET++QQR+RFQ+ELEF+QCLANPNYLNFLAQRGY KD++FVNYLKYLLYWK+P+YAK
Sbjct: 3 AAMETDEQQRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAK 62
Query: 65 YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL----LNEAAQ 120
YLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR ++ + Q
Sbjct: 63 YLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRMQQALAEQQQQ 122
Query: 121 NNISG 125
NN SG
Sbjct: 123 NNTSG 127
>sp|Q4QR03|MD31A_XENLA Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus
laevis GN=med31-a PE=2 SV=2
Length = 128
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 107/122 (87%), Gaps = 4/122 (3%)
Query: 8 ETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLK 67
ET++QQR+RFQ+ELEF+QCLANPNYLNFLAQRGY KD+ FVNY+KYLLYWKEP+YAKYLK
Sbjct: 6 ETDEQQRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKPFVNYMKYLLYWKEPEYAKYLK 65
Query: 68 YPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK----LLNEAAQNNI 123
YP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR + L + QNN
Sbjct: 66 YPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVRLQQALAEQQQQNNT 125
Query: 124 SG 125
SG
Sbjct: 126 SG 127
>sp|Q9CXU1|MED31_MOUSE Mediator of RNA polymerase II transcription subunit 31 OS=Mus
musculus GN=Med31 PE=1 SV=2
Length = 131
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/114 (76%), Positives = 101/114 (88%), Gaps = 1/114 (0%)
Query: 1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
MA ET+D RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct: 1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60
Query: 60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK 113
P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +
Sbjct: 61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114
>sp|A0JNN3|MED31_BOVIN Mediator of RNA polymerase II transcription subunit 31 OS=Bos
taurus GN=MED31 PE=2 SV=1
Length = 131
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/130 (71%), Positives = 108/130 (83%), Gaps = 5/130 (3%)
Query: 1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
MA ET+D RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct: 1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60
Query: 60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK----LL 115
P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR + L
Sbjct: 61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120
Query: 116 NEAAQNNISG 125
+ QNN SG
Sbjct: 121 EQQQQNNASG 130
>sp|Q9Y3C7|MED31_HUMAN Mediator of RNA polymerase II transcription subunit 31 OS=Homo
sapiens GN=MED31 PE=1 SV=1
Length = 131
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 108/130 (83%), Gaps = 5/130 (3%)
Query: 1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
MA ET+D RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWK+
Sbjct: 1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD 60
Query: 60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK----LL 115
P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR + L
Sbjct: 61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120
Query: 116 NEAAQNNISG 125
+ QNN SG
Sbjct: 121 EQQQQNNTSG 130
>sp|Q6DH26|MED31_DANRE Mediator of RNA polymerase II transcription subunit 31 OS=Danio
rerio GN=med31 PE=2 SV=2
Length = 136
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 83/109 (76%), Positives = 101/109 (92%)
Query: 5 GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
G ET++Q R RFQ+ELEF+QCLANPNYLNFLAQRGYL+++ FVNYLKYLLYWKEP+YAK
Sbjct: 3 GVMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAK 62
Query: 65 YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK 113
+LKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKRT+
Sbjct: 63 FLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTR 111
>sp|Q6GQA1|MD31B_XENLA Mediator of RNA polymerase II transcription subunit 31-B OS=Xenopus
laevis GN=med31-b PE=2 SV=2
Length = 129
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 97/103 (94%)
Query: 12 QQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMC 71
Q R+RFQ+ELEF+QCLANPNYLNFLAQRGY KD++FVNYLKYLLYWK+P+YAKYLKYP C
Sbjct: 11 QHRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQC 70
Query: 72 LYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
L+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR ++
Sbjct: 71 LHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRM 113
>sp|P91869|MED31_CAEEL Mediator of RNA polymerase II transcription subunit 31
OS=Caenorhabditis elegans GN=mdt-31 PE=3 SV=1
Length = 163
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 82/107 (76%)
Query: 8 ETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLK 67
E+ + ++ RF++E EF+Q LANPNYLNFLAQRGY K+E FVNYLKYLLYWK+PQYA+ LK
Sbjct: 2 ESVESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKDPQYARCLK 61
Query: 68 YPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
+P CL+ L+ LQ + FR + AKF++DQ VL WQ Y RKR +L
Sbjct: 62 FPQCLHMLEALQSQQFRDSMAYGPSAKFVEDQVVLQWQFYLRKRHRL 108
>sp|Q61DP3|MED31_CAEBR Mediator of RNA polymerase II transcription subunit 31
OS=Caenorhabditis briggsae GN=mdt-31 PE=3 SV=2
Length = 168
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 81/107 (75%)
Query: 8 ETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLK 67
ET + ++ RF++E EF+Q LANPNYLNFLAQRGY K+E FVNYLKYLLYWK PQYA+ LK
Sbjct: 2 ETPESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKNPQYARCLK 61
Query: 68 YPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
+P CL+ L+ LQ + FR + AKF++DQ VL WQ Y RKR +L
Sbjct: 62 FPQCLHMLEALQSQQFRDAMAYGPSAKFVEDQVVLQWQFYLRKRHRL 108
>sp|Q8MPD6|MED31_TAESO Mediator of RNA polymerase II transcription subunit 31 OS=Taenia
solium GN=Ts24233 PE=2 SV=1
Length = 148
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 77/107 (71%)
Query: 15 LRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYF 74
+RFQIELEF+Q L NP+YL FLAQ+G F+NYL YL YWK P Y++++ YP CL+
Sbjct: 29 VRFQIELEFVQSLGNPDYLTFLAQQGCFDKPEFINYLSYLQYWKSPSYSRFITYPFCLHM 88
Query: 75 LDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQN 121
LDLLQ FRRE+ + +FIDDQ +L W++Y RKR +++N+ Q+
Sbjct: 89 LDLLQSPDFRREVAHESVTRFIDDQMLLHWKNYLRKRAEMVNKHVQS 135
>sp|Q54NI7|MED31_DICDI Putative mediator of RNA polymerase II transcription subunit 31
OS=Dictyostelium discoideum GN=med31 PE=3 SV=1
Length = 176
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 78/107 (72%)
Query: 8 ETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLK 67
+ E+ LRF +ELEFIQCL+NP YLN+LAQ Y +D+AFVNYL YL YWK+P+YAK++
Sbjct: 47 DEEEANYLRFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIV 106
Query: 68 YPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
YP LYFLDLLQ E FR+E+ +SQ FI +QQ WQ+Y R +
Sbjct: 107 YPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRMSI 153
>sp|Q8VYB1|MED31_ARATH Mediator of RNA polymerase II transcription subunit 31
OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1
Length = 196
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 69/103 (66%)
Query: 11 DQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPM 70
D R RF +ELEFIQCLANP Y+++LAQ Y +DEAF+ YLKYL YW+ P+Y K++ YP
Sbjct: 26 DGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPH 85
Query: 71 CLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK 113
CLYFL+LLQ +FR + + + QQ W++Y R K
Sbjct: 86 CLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLK 128
>sp|Q6CAU9|MED31_YARLI Mediator of RNA polymerase II transcription subunit 31 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SOH1 PE=3 SV=1
Length = 160
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 6 GPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKY 65
G E D+ LRF+ ELEF+Q LANP YL++LA YL+ F+NYL YL YW+EP+YA++
Sbjct: 18 GSEQPDRS-LRFEAELEFVQSLANPQYLSYLAHNKYLESPEFLNYLSYLEYWREPKYARF 76
Query: 66 LKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLW 104
L YP CL+ L LLQY FR+EI AK + D+ W
Sbjct: 77 LVYPNCLHVLKLLQYATFRKEISRPDFAKQLMDEFYYAW 115
>sp|Q9USH1|MED31_SCHPO Mediator of RNA polymerase II transcription subunit 31
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med31 PE=3 SV=1
Length = 139
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 65/91 (71%)
Query: 14 RLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLY 73
+ RF+IELEF+Q L+NP YLNFLAQ Y +DEAF+ YL+Y+ YW+EP+Y K++ YP CL+
Sbjct: 14 KSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCLH 73
Query: 74 FLDLLQYEHFRREIVNSQCAKFIDDQQVLLW 104
L LL+ FR +I + +K ++D+ W
Sbjct: 74 MLTLLKNPQFRNDISRADLSKQVNDEIYYEW 104
>sp|Q59P87|MED31_CANAL Mediator of RNA polymerase II transcription subunit 31 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SOH1 PE=3
SV=1
Length = 146
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFL 75
R++IELEF+Q L+N Y+N+LAQ Y DE F+NYL YL YW +P+Y+K+L YP CL+ L
Sbjct: 30 RWEIELEFVQSLSNIPYVNYLAQNNYFNDENFINYLNYLQYWTQPEYSKFLVYPNCLHIL 89
Query: 76 DLLQYEHFRREIVNSQCAKFIDDQQVLLWQ 105
LLQ E+FR+ I+N + + V WQ
Sbjct: 90 KLLQDENFRKNIINQDFMNSLMNDMVKRWQ 119
>sp|Q6BUN9|MED31_DEBHA Mediator of RNA polymerase II transcription subunit 31
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SOH1 PE=3 SV=2
Length = 135
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 61/90 (67%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFL 75
R++IELEF+Q LAN YLN LAQ YL + F+NY++YL YWKEP+Y+KYL YP CL+ L
Sbjct: 8 RWEIELEFVQSLANIQYLNHLAQNNYLSNPEFLNYIEYLNYWKEPEYSKYLVYPNCLHIL 67
Query: 76 DLLQYEHFRREIVNSQCAKFIDDQQVLLWQ 105
LLQ E FR+ I+ + + V WQ
Sbjct: 68 TLLQNEEFRKNILIPDFMNTVMNDMVKRWQ 97
>sp|P0CS74|MED31_CRYNJ Mediator of RNA polymerase II transcription subunit 31
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SOH1 PE=3 SV=1
Length = 180
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 15 LRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYF 74
+RFQ ELEFIQCLA+P YL+ L +GYL AF+NYLKYL YW+EPQY +++ YP CL +
Sbjct: 31 VRFQSELEFIQCLAHPQYLHELHIQGYLGKPAFLNYLKYLEYWREPQYVRFIIYPTCLVY 90
Query: 75 LDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTM 129
L LLQ E FR + + FI + + +H+ R E Q+ A +M
Sbjct: 91 LTLLQTELFRSRLGD---MGFITELMRVGSRHHATWRVGKPAEDKQSEEKPAVSM 142
>sp|P0CS75|MED31_CRYNB Mediator of RNA polymerase II transcription subunit 31
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SOH1 PE=3 SV=1
Length = 180
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 15 LRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYF 74
+RFQ ELEFIQCLA+P YL+ L +GYL AF+NYLKYL YW+EPQY +++ YP CL +
Sbjct: 31 VRFQSELEFIQCLAHPQYLHELHIQGYLGKPAFLNYLKYLEYWREPQYVRFIIYPTCLVY 90
Query: 75 LDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTM 129
L LLQ E FR + + FI + + +H+ R E Q+ A +M
Sbjct: 91 LTLLQTELFRSRLGD---MGFITELMRVGSRHHATWRVGKPAEDKQSEEKPAVSM 142
>sp|Q0U957|MED31_PHANO Mediator of RNA polymerase II transcription subunit 31
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=SOH1 PE=3 SV=3
Length = 115
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPM-CLYF 74
RF++ELEF+QCLANP YLN+LA + Y FV YL YL Y+ EP+Y K+L +P L
Sbjct: 20 RFELELEFVQCLANPVYLNYLATQKYFDKPEFVAYLDYLQYFAEPKYIKFLHHPGPTLRA 79
Query: 75 LDLLQYEHFRREIVNSQCA 93
L+LLQ E FR++I+ A
Sbjct: 80 LELLQQERFRQDIITPGLA 98
>sp|Q7SF81|MED31_NEUCR Mediator of RNA polymerase II transcription subunit 31
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=soh-1 PE=3 SV=1
Length = 134
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 3 NKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQY 62
G E + RF++ELEF+Q L NP YLN LA R L + AF+ YL YL YW P Y
Sbjct: 20 GSGADEPKYGGYTRFELELEFVQALGNPLYLNHLASRKLLSNPAFIAYLDYLQYWSRPPY 79
Query: 63 AKYLKYPM-CLYFLDLLQYEHFRREIVN 89
KY+ YP L L+LLQ E FR++I++
Sbjct: 80 LKYITYPGPTLKNLELLQQEKFRQDIIS 107
>sp|Q4P308|MED31_USTMA Mediator of RNA polymerase II transcription subunit 31 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=SOH1 PE=3 SV=1
Length = 153
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 7 PETEDQQR----LRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQY 62
P ++Q+R F +LEF+ LANP YLN LA G L +F YLKYL Y++ P+Y
Sbjct: 19 PSRDEQRRQANQAAFSRDLEFLSSLANPYYLNHLALSGALSSPSFKRYLKYLDYFRHPKY 78
Query: 63 AKYLKYPMCLYFLDLLQ-YEHFRREIVNSQCAKFIDDQQVLLW 104
KYL YP L+FLDLLQ E FR + A + +Q+ W
Sbjct: 79 VKYLHYPQALHFLDLLQNEEEFRLACRDPAFAGEVMAKQIGHW 121
>sp|Q8SU76|MED31_ENCCU Mediator of RNA polymerase II transcription subunit 31
OS=Encephalitozoon cuniculi (strain GB-M1) GN=SOH1 PE=3
SV=1
Length = 103
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFL 75
RF+ ELEF+Q L NP+YL +L + G+ + E F +YL+YL YW+ P+Y+++L YP CL L
Sbjct: 5 RFERELEFVQLLCNPDYLRWLTREGHFESEEFRSYLRYLEYWRSPEYSRFLTYPQCLAVL 64
Query: 76 DLLQYEHFRREIVNSQCAKFIDDQQVLLW 104
+ L E+ + + + +QQ +W
Sbjct: 65 EHLNSENINDMLSDENFFLALGEQQYFIW 93
>sp|Q75EB3|MED31_ASHGO Mediator of RNA polymerase II transcription subunit 31 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=SOH1 PE=3 SV=1
Length = 127
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 7 PETEDQQR-LRFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
P +E +Q RF++ELEF+Q LAN Y+ FL Q +D F YLKYL YW EP Y +
Sbjct: 12 PSSEGEQLPSRFEVELEFVQSLANIPYVTFLLTQHQIWQDPRFKAYLKYLEYWCEPPYTQ 71
Query: 65 YLKYPMCLYFLDLL 78
++ YP CL+ L LL
Sbjct: 72 FIVYPNCLFVLKLL 85
>sp|A1CL91|MED31_ASPCL Mediator of RNA polymerase II transcription subunit 31
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=soh1 PE=3 SV=1
Length = 161
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 63/133 (47%), Gaps = 27/133 (20%)
Query: 16 RFQIELEFIQCLANPNYLNFLA-------------QRGYLKDE-------AFVNYLKYLL 55
RF +ELEF+ LANP YL+ LA G +E AF YL YL
Sbjct: 20 RFTLELEFVSSLANPYYLSHLAVTYPNLLGISKSGDEGETSNESSDPEAKAFAAYLAYLY 79
Query: 56 -YWKEPQYAKYLKYP-MCLYFLDLLQYEHFRREIVNSQ-----CAKFIDDQQVLLWQHYT 108
YWK P+YA++L +P L L LLQ E FRR+I+ Q +D+Q Q
Sbjct: 80 SYWKTPEYAQFLTHPGATLRALRLLQEETFRRDIIRPQVIEALAGTGVDEQGAQDTQEGE 139
Query: 109 RKRTKLLNEAAQN 121
++ + E AQ+
Sbjct: 140 GEQKQNKEEDAQD 152
>sp|P38633|MED31_YEAST Mediator of RNA polymerase II transcription subunit 31
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SOH1 PE=1 SV=1
Length = 127
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 2 ANKGGPETEDQQRL--RFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWK 58
N + DQ L RF++ELEFIQ LAN Y+ +L Q+ K F NYLKYL YW
Sbjct: 6 GNAPATPSSDQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWC 65
Query: 59 EPQYAKYLKYPMCLYFLDLL 78
P Y++ + YP CL+ L LL
Sbjct: 66 NPPYSQCIVYPNCLFILKLL 85
>sp|Q0CQK7|MED31_ASPTN Mediator of RNA polymerase II transcription subunit 31
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=soh1 PE=3 SV=2
Length = 160
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 16 RFQIELEFIQCLANPNYLNFLA-------------------QRGYLKDEAFVNYLKYLL- 55
RF +ELEF+ LANP YL+ LA G +AF YL YL
Sbjct: 21 RFTLELEFVSSLANPYYLSHLAVNYPNLLGINKSGDDNDTNDSGDPDAQAFAAYLAYLYS 80
Query: 56 YWKEPQYAKYLKYP-MCLYFLDLLQYEHFRREIVNSQC 92
YWK P+YA++L +P L L LLQ + FRR+I+ Q
Sbjct: 81 YWKTPEYAQFLTHPGATLRALRLLQEDTFRRDIIRPQV 118
>sp|Q6FR78|MED31_CANGA Mediator of RNA polymerase II transcription subunit 31 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SOH1 PE=3 SV=1
Length = 130
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQRGYL--KDEAFVNYLKYLLYWKEPQYAKYLKYPMCLY 73
RF++ELEF+Q LAN Y+ +L + L KD F NYLKYL YW EP YA+ + YP L+
Sbjct: 24 RFEVELEFVQSLANIPYVTYLLTQQQLLWKDPKFKNYLKYLEYWCEPPYAQCIVYPNALF 83
Query: 74 FLDLL 78
L LL
Sbjct: 84 ILKLL 88
>sp|A1D619|MED31_NEOFI Mediator of RNA polymerase II transcription subunit 31
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=soh1 PE=3 SV=1
Length = 162
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 22/99 (22%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQR-----GYLKD---------------EAFVNYLKYLL 55
RF +ELEF+ LANP YL+ LA G K +AF YL YL
Sbjct: 21 RFTLELEFVSSLANPYYLSHLAVTYPNLLGISKSSDDSNTGTEGPDPEAQAFAAYLAYLY 80
Query: 56 -YWKEPQYAKYLKYP-MCLYFLDLLQYEHFRREIVNSQC 92
YWK P+YA++L +P L L LLQ E FRR+I+ Q
Sbjct: 81 SYWKTPEYAQFLTHPGATLRALRLLQEETFRRDIIRPQV 119
>sp|Q4WYS1|MED31_ASPFU Mediator of RNA polymerase II transcription subunit 31
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=soh1 PE=3 SV=1
Length = 162
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 22/99 (22%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQR-----GYLKD---------------EAFVNYLKYLL 55
RF +ELEF+ LANP YL+ LA G K +AF YL YL
Sbjct: 21 RFTLELEFVSSLANPYYLSHLAVTYPNLLGISKSSDDSNTSTEGPDPEAQAFAAYLAYLY 80
Query: 56 -YWKEPQYAKYLKYP-MCLYFLDLLQYEHFRREIVNSQC 92
YWK P+YA++L +P L L LLQ E FRR+I+ Q
Sbjct: 81 SYWKTPEYAQFLTHPGATLRALRLLQEESFRRDIIRPQV 119
>sp|Q5BAD5|MED31_EMENI Mediator of RNA polymerase II transcription subunit 31
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=soh1 PE=3 SV=1
Length = 158
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 22/99 (22%)
Query: 16 RFQIELEFIQCLANPNYLNFLAQR-----GYLKD---------------EAFVNYLKYLL 55
RF +ELEF+ LANP YL+ LA G K EAF YL YL
Sbjct: 20 RFTLELEFVSSLANPYYLSHLAVNYPSLLGISKSGNENEVNDDNSDPDAEAFAAYLAYLY 79
Query: 56 -YWKEPQYAKYLKYP-MCLYFLDLLQYEHFRREIVNSQC 92
YWK P+Y+++L +P L L LLQ E FRR+I+ Q
Sbjct: 80 SYWKTPEYSQFLTHPGATLRALRLLQEEKFRRDIIRPQV 118
>sp|Q6CUD2|MED31_KLULA Mediator of RNA polymerase II transcription subunit 31
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SOH1
PE=3 SV=1
Length = 124
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 16 RFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYF 74
RF+IELEF+Q LAN Y+ +L Q +D F YLKYL YW EP+YA+ + YP L+
Sbjct: 19 RFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLFV 78
Query: 75 LDLL 78
L LL
Sbjct: 79 LKLL 82
>sp|A2QU71|MED31_ASPNC Mediator of RNA polymerase II transcription subunit 31
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=soh1 PE=3 SV=1
Length = 151
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 22/95 (23%)
Query: 16 RFQIELEFIQCLANPNYLNFLA----------QRGYLKD----------EAFVNYLKYLL 55
RF +ELEF+ LANP YL+ LA + G D + F YL YL
Sbjct: 22 RFTLELEFVSSLANPYYLSHLAVTYPNLLGINKSGDDSDVNNDSTDPDAQGFAAYLAYLY 81
Query: 56 -YWKEPQYAKYLKYP-MCLYFLDLLQYEHFRREIV 88
YWK P+YA++L +P L L LLQ E FRR+I+
Sbjct: 82 SYWKTPEYAQFLTHPGATLRALRLLQEETFRRDII 116
>sp|Q1E146|MED31_COCIM Mediator of RNA polymerase II transcription subunit 31
OS=Coccidioides immitis (strain RS) GN=SOH1 PE=3 SV=1
Length = 152
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 16 RFQIELEFIQCLANPNYLNFLA------------------QRGYLKDEAFVNYLKYLL-Y 56
RF +ELEF+ LANP Y++ LA +AF YL YL Y
Sbjct: 18 RFTLELEFVLSLANPYYISHLAVTYPHLLGISSQSTDNDDPSASSDAKAFAAYLAYLYDY 77
Query: 57 WKEPQYAKYLKYP-MCLYFLDLLQYEHFRREIVNSQCAKFI--DDQQVLLWQHYTRKRTK 113
WK P+Y ++L +P L L LLQ E FR+ ++ Q + + +V L R K
Sbjct: 78 WKRPEYVQFLTHPGATLRALRLLQEESFRKAVIRPQVIEALLGTTTEVDLHVESEEDREK 137
Query: 114 LLNEAAQNNISGA 126
E A+ +GA
Sbjct: 138 NNEEQAEKGSNGA 150
>sp|Q6GQ70|S35B1_XENLA Solute carrier family 35 member B1 OS=Xenopus laevis GN=slc35b1
PE=2 SV=1
Length = 320
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 8 ETEDQQRLRFQIELEFIQCLANPNYLNFLAQ 38
E E Q++ RF + L F+QC+ N + L Q
Sbjct: 40 EGEKQEKFRFALSLVFVQCIVNALFAKLLIQ 70
>sp|Q8AXS6|S35B1_XENTR Solute carrier family 35 member B1 OS=Xenopus tropicalis
GN=slc35b1 PE=2 SV=2
Length = 323
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 8 ETEDQQRLRFQIELEFIQCLANPNYLNFLAQ 38
E E Q++ RF + L F+QC+ N + L Q
Sbjct: 42 EGEKQEKFRFALSLVFVQCIVNALFAKLLIQ 72
>sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan OS=Caenorhabditis elegans GN=unc-52
PE=1 SV=2
Length = 3375
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 142 PRPEEVWTVLWGP---PINCLLTTSSPSNVLNLHDNKP 176
P P W + WGP P CL T+ L +HD +P
Sbjct: 299 PEPYINWRLNWGPVCEPPRCLQTSEGGYGTLTIHDAQP 336
>sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=atp12 PE=3 SV=2
Length = 291
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 75 LDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQN 121
+D+ Q++ +E++++Q +F+D +L++ T KLL E +N
Sbjct: 111 IDISQFKKEEKELLSTQLIRFLDTDTILIYSPETEYEGKLLEEQKEN 157
>sp|B1KK48|SYR_SHEWM Arginine--tRNA ligase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=argS PE=3 SV=1
Length = 581
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 63 AKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDD 98
A LK LYF+DL Q HF++ ++ A F+DD
Sbjct: 331 ANVLKADRALYFVDLRQALHFQQVFKLARKANFVDD 366
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc
PE=3 SV=1
Length = 1199
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 97 DDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPNDIQPRPEEVWTVLWGPPI 156
D+ ++W ++ TK+ E++Q S A +E+R + N++ ++ + GP I
Sbjct: 107 DNNYYVVWYEVEKQNTKINTESSQKKTSKASKVEKRRRMKKNEVLDLLSKISLIADGPNI 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,494,171
Number of Sequences: 539616
Number of extensions: 2947051
Number of successful extensions: 5551
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5449
Number of HSP's gapped (non-prelim): 50
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)