Query psy8635
Match_columns 177
No_of_seqs 125 out of 155
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 23:49:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fbi_B Mediator of RNA polymer 100.0 3.1E-45 1.1E-49 288.2 4.7 97 9-106 18-130 (130)
2 3fbi_B Mediator of RNA polymer 41.3 3.7 0.00013 32.4 -1.0 49 42-97 36-86 (130)
3 3os4_A Naprtase, nicotinate ph 32.6 41 0.0014 29.9 4.1 37 17-54 54-91 (407)
4 2lnm_A Protein TIC 40, chlorop 26.1 56 0.0019 21.4 3.0 23 76-98 7-29 (62)
5 2rbd_A BH2358 protein; putativ 25.7 1.6E+02 0.0054 22.0 5.8 58 81-142 37-94 (171)
6 1ny9_A Transcriptional activat 15.5 82 0.0028 22.9 2.2 21 79-99 111-133 (143)
7 2llw_A Heat shock protein STI1 13.7 1.3E+02 0.0043 20.7 2.6 22 76-97 15-36 (71)
8 4b63_A L-ornithine N5 monooxyg 12.7 1.3E+02 0.0046 25.8 3.1 29 26-54 111-154 (501)
9 1rtw_A Transcriptional activat 12.2 2.5E+02 0.0085 21.5 4.2 27 25-52 15-41 (220)
10 2qzc_A Transcriptional activat 11.7 1.9E+02 0.0065 22.0 3.4 25 27-52 22-46 (214)
No 1
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=100.00 E-value=3.1e-45 Score=288.25 Aligned_cols=97 Identities=39% Similarity=0.730 Sum_probs=76.8
Q ss_pred CchhhcchhHhhhhHHhhhcChHHHHHH-HhhCCCCcHHHHHHHHHHhhhcCCCccccccccchHHHHHhhccHHHHHHh
Q psy8635 9 TEDQQRLRFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREI 87 (177)
Q Consensus 9 ~~~~~~~RFE~ELEFVQ~LANP~YL~~L-Aq~gyf~d~~FinYLkYL~YWk~PeYakyL~YP~cL~~LdLLQ~e~FR~~i 87 (177)
++...++|||+|||||||||||+||+|| |++|||+||+|+||||||+|||+|+|+|||+||+||+||+|||+ .||++|
T Consensus 18 ~~~~l~~RFe~ELEFVQ~LANP~YL~~Llaq~gy~~d~~FinYLkYL~YWk~PeYakyl~YP~cL~~L~LLq~-~fr~ai 96 (130)
T 3fbi_B 18 DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVYPNCLFILKLLNG-FMESAI 96 (130)
T ss_dssp -CCCCCCHHHHHHHHHHHTTSHHHHHHHHTCSGGGTSTHHHHHHHHGGGGGSTTGGGGCSCTHHHHHHHHHHH-HHHHCC
T ss_pred ccCcchhHHHHHHHHHHHhcCHHHHHHHHHHcccccCHHHHHHHHHHHHhcCCCchhHhcCccHHHHHHHHHH-HHHHHH
Confidence 3444699999999999999999999998 78899999999999999999999999999999999999999997 999999
Q ss_pred hChH-----------HHH----HHHHHHHHHHhh
Q psy8635 88 VNSQ-----------CAK----FIDDQQVLLWQH 106 (177)
Q Consensus 88 ~n~~-----------~~~----~i~~Qq~~~Wq~ 106 (177)
+|++ ++. ..+++|+.+|+.
T Consensus 97 ~nedg~legl~~lp~~~q~qg~~~mn~mv~rw~~ 130 (130)
T 3fbi_B 97 VNEDGLLEGLDELPKIIQLQGPQWMNEMVERWAN 130 (130)
T ss_dssp BCSSSCBGGGTTCC--------------------
T ss_pred hCcchhhhhHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 9955 443 667888888863
No 2
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=41.33 E-value=3.7 Score=32.41 Aligned_cols=49 Identities=31% Similarity=0.665 Sum_probs=32.2
Q ss_pred CCcHHHHHHH--HHHhhhcCCCccccccccchHHHHHhhccHHHHHHhhChHHHHHHH
Q psy8635 42 LKDEAFVNYL--KYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFID 97 (177)
Q Consensus 42 f~d~~FinYL--kYL~YWk~PeYakyL~YP~cL~~LdLLQ~e~FR~~i~n~~~~~~i~ 97 (177)
+.+|.+++|| ..= ||++|.+..||+| |+--..|+.-+-|.-|.|..+++
T Consensus 36 LANP~YL~~Llaq~g-y~~d~~FinYLkY------L~YWk~PeYakyl~YP~cL~~L~ 86 (130)
T 3fbi_B 36 LANIQYVTYLLTQQQ-IWKSPNFKNYLKY------LEYWCNPPYSQCIVYPNCLFILK 86 (130)
T ss_dssp TTSHHHHHHHHTCSG-GGTSTHHHHHHHH------GGGGGSTTGGGGCSCTHHHHHHH
T ss_pred hcCHHHHHHHHHHcc-cccCHHHHHHHHH------HHHhcCCCchhHhcCccHHHHHH
Confidence 4467777776 112 6777777777664 44555677777778887766554
No 3
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=32.64 E-value=41 Score=29.93 Aligned_cols=37 Identities=11% Similarity=0.415 Sum_probs=26.2
Q ss_pred hHhhhhHHhhhc-ChHHHHHHHhhCCCCcHHHHHHHHHH
Q psy8635 17 FQIELEFIQCLA-NPNYLNFLAQRGYLKDEAFVNYLKYL 54 (177)
Q Consensus 17 FE~ELEFVQ~LA-NP~YL~~LAq~gyf~d~~FinYLkYL 54 (177)
.+..|+++..|. .+.=|.||+..++| +++|+.||+=.
T Consensus 54 l~~~l~~l~~l~ft~~ei~yL~~~~~~-~~~fl~yL~~f 91 (407)
T 3os4_A 54 IRHQVTLMGQLALTSDEFIYLSSLPFF-QDDYLHWLRDF 91 (407)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHTSSSC-CHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhCCCC-CHHHHHHHHhC
Confidence 455677777775 56668888877877 57787777653
No 4
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=26.07 E-value=56 Score=21.38 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=15.2
Q ss_pred HhhccHHHHHHhhChHHHHHHHH
Q psy8635 76 DLLQYEHFRREIVNSQCAKFIDD 98 (177)
Q Consensus 76 dLLQ~e~FR~~i~n~~~~~~i~~ 98 (177)
+++++|+....+.+|+++..+.+
T Consensus 7 kl~~dPe~~~~m~dP~~~~~lq~ 29 (62)
T 2lnm_A 7 KIMENPDVAMAFQNPRVQAALME 29 (62)
T ss_dssp HHTTSHHHHHHTTSHHHHHHHHH
T ss_pred HHHcChHHHHHcCCHHHHHHHHH
Confidence 45667777777777777665543
No 5
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=25.66 E-value=1.6e+02 Score=21.98 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=35.3
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhccCCCCCcccccCCCCCCCCC
Q psy8635 81 EHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPNDIQP 142 (177)
Q Consensus 81 e~FR~~i~n~~~~~~i~~Qq~~~Wq~y~r~R~~~~~~~~e~~~~~~~~~~~r~~~~~~~~~~ 142 (177)
.-|+.-+.++++.+.|.++. +.....=..+.....+...+.++....+...|++|+.+
T Consensus 37 ~~f~~~~~D~elk~iL~~~~----~~~~~~i~~l~~~~~~~g~p~P~~~~~~~~~~~~dv~~ 94 (171)
T 2rbd_A 37 RSFINHTGDEDLKNLIDEAI----QAMQDENHQLEELLRSNGVGLPPAPPDRPAARLDDIPV 94 (171)
T ss_dssp HHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCCCCCCCCCCCCCCGGGSCG
T ss_pred HHHHHhcCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCcccccCccccCCC
Confidence 46778888888888887763 33333333343444455555555455577777788765
No 6
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=15.46 E-value=82 Score=22.88 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=10.9
Q ss_pred ccHHHHHHhh--ChHHHHHHHHH
Q psy8635 79 QYEHFRREIV--NSQCAKFIDDQ 99 (177)
Q Consensus 79 Q~e~FR~~i~--n~~~~~~i~~Q 99 (177)
.+|+|+..+- .+.++.+|.+-
T Consensus 111 ~D~rF~~~~d~~~~Gla~fl~~A 133 (143)
T 1ny9_A 111 SDERFTRNIDAAKPGLAAYMRDA 133 (143)
T ss_dssp STHHHHHHHGGGSTTHHHHHHHH
T ss_pred cCHHHHHhHcccChhHHHHHHHH
Confidence 4555555552 45555555544
No 7
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=13.68 E-value=1.3e+02 Score=20.67 Aligned_cols=22 Identities=0% Similarity=0.031 Sum_probs=15.0
Q ss_pred HhhccHHHHHHhhChHHHHHHH
Q psy8635 76 DLLQYEHFRREIVNSQCAKFID 97 (177)
Q Consensus 76 dLLQ~e~FR~~i~n~~~~~~i~ 97 (177)
++|++|++...+.||.++..+.
T Consensus 15 ~~m~dPEi~~im~DP~~~~~lq 36 (71)
T 2llw_A 15 RAMKDPEVAAIMQDPVMQSILQ 36 (71)
T ss_dssp HHHHSHHHHHHHTCTHHHHHHH
T ss_pred HHhcCHHHHHHhCCHHHHHHHH
Confidence 4566777777777777766654
No 8
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=12.68 E-value=1.3e+02 Score=25.79 Aligned_cols=29 Identities=31% Similarity=0.710 Sum_probs=18.7
Q ss_pred hhcChH----HHHHHHhhCC-----------CCcHHHHHHHHHH
Q psy8635 26 CLANPN----YLNFLAQRGY-----------LKDEAFVNYLKYL 54 (177)
Q Consensus 26 ~LANP~----YL~~LAq~gy-----------f~d~~FinYLkYL 54 (177)
+|+||. |++||.++|- -.-.+|..||+..
T Consensus 111 tl~~P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~ 154 (501)
T 4b63_A 111 TLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWC 154 (501)
T ss_dssp TTTCTTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHH
T ss_pred cccCCCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHH
Confidence 567774 8999988773 2334566666543
No 9
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=12.18 E-value=2.5e+02 Score=21.49 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred hhhcChHHHHHHHhhCCCCcHHHHHHHH
Q psy8635 25 QCLANPNYLNFLAQRGYLKDEAFVNYLK 52 (177)
Q Consensus 25 Q~LANP~YL~~LAq~gyf~d~~FinYLk 52 (177)
+..-+..+++-|+ .|-+..+.|..||.
T Consensus 15 ~~~~~HPFv~~l~-~GtL~~~~f~~YL~ 41 (220)
T 1rtw_A 15 RRFLPHKFLIEMA-ENTIKKENFEKWLV 41 (220)
T ss_dssp GGGTTCHHHHHHH-TTCCCHHHHHHHHH
T ss_pred HHHHCChHHHHHH-cCCCCHHHHHHHHH
Confidence 3444455777775 78999999999987
No 10
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=11.70 E-value=1.9e+02 Score=22.01 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.9
Q ss_pred hcChHHHHHHHhhCCCCcHHHHHHHH
Q psy8635 27 LANPNYLNFLAQRGYLKDEAFVNYLK 52 (177)
Q Consensus 27 LANP~YL~~LAq~gyf~d~~FinYLk 52 (177)
.-+..+++-|+ .|-+..+.|..||.
T Consensus 22 ~~~HpFv~~l~-~GtL~~~~f~~Yl~ 46 (214)
T 2qzc_A 22 YVKHEFILKMR-DGSLPLDIFRYYLI 46 (214)
T ss_dssp HHTCHHHHHHH-TSCSCHHHHHHHHH
T ss_pred HHCChHHHHHH-cCCCCHHHHHHHHH
Confidence 33444677675 78999999999987
Done!