Query psy8635
Match_columns 177
No_of_seqs 125 out of 155
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 23:49:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8635.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8635hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yira2 d.41.2.2 (A:4-144) Nic 64.7 3.6 0.00026 29.8 4.2 44 17-64 55-100 (141)
2 d1vlpa1 d.41.2.2 (A:1-149) Nic 48.4 11 0.0008 27.3 4.6 40 17-56 53-93 (149)
3 d2f7fa2 d.41.2.1 (A:4-140) Put 42.7 17 0.0013 25.5 4.8 45 17-65 53-98 (137)
4 d1to9a_ a.132.1.3 (A:) Transcr 23.1 37 0.0027 24.0 3.7 28 24-52 14-41 (225)
5 d2j3wb1 d.278.1.2 (B:21-188) T 16.6 13 0.00092 27.2 -0.2 32 145-176 71-102 (168)
6 d1ybea2 d.41.2.2 (A:8-167) Nic 15.5 42 0.003 24.3 2.5 37 16-52 68-110 (160)
7 d1yqfa1 d.25.1.1 (A:14-195) Hy 13.9 21 0.0015 25.8 0.4 33 32-66 141-174 (182)
8 d2a9ua1 a.118.23.1 (A:6-139) U 13.4 2E+02 0.015 19.8 6.3 56 44-104 52-111 (134)
9 d1or4a_ a.1.1.2 (A:) Heme-base 13.3 1.2E+02 0.0089 20.6 4.5 43 78-120 65-116 (169)
10 d1tuka1 a.52.1.1 (A:1-67) Non- 11.1 34 0.0025 22.3 0.7 22 55-76 37-58 (67)
No 1
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=64.74 E-value=3.6 Score=29.80 Aligned_cols=44 Identities=27% Similarity=0.643 Sum_probs=30.0
Q ss_pred hHhhhhHHhhhc-ChHHHHHHHhhCCCCcHHHHHHHHHHhhhc-CCCccc
Q psy8635 17 FQIELEFIQCLA-NPNYLNFLAQRGYLKDEAFVNYLKYLLYWK-EPQYAK 64 (177)
Q Consensus 17 FE~ELEFVQ~LA-NP~YL~~LAq~gyf~d~~FinYLkYL~YWk-~PeYak 64 (177)
.+..|++++.|. ...=+.||++.++| +++|++||+= || .|++..
T Consensus 55 l~~~i~~l~~lrFt~eei~yL~~~~~f-~~~fldyL~~---frf~~~~~~ 100 (141)
T d1yira2 55 IREQLEYLAGLAISDEQLAFLERIPFL-APDFIRFLGL---FRFNPRYVQ 100 (141)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHTSTTS-CHHHHHHHHH---CCCCGGGEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHcCCCC-CHHHHHHHHh---CCCCceEEE
Confidence 456688888876 56678888888888 4667777663 33 455443
No 2
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.42 E-value=11 Score=27.28 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=29.5
Q ss_pred hHhhhhHHhhhc-ChHHHHHHHhhCCCCcHHHHHHHHHHhh
Q psy8635 17 FQIELEFIQCLA-NPNYLNFLAQRGYLKDEAFVNYLKYLLY 56 (177)
Q Consensus 17 FE~ELEFVQ~LA-NP~YL~~LAq~gyf~d~~FinYLkYL~Y 56 (177)
.+..+++++.|. .+.=+.||+.++-+=+++|++||+-+.+
T Consensus 53 l~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~rF 93 (149)
T d1vlpa1 53 LKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNY 93 (149)
T ss_dssp HHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 556788888776 6778999997765557778888776654
No 3
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}
Probab=42.66 E-value=17 Score=25.46 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=29.9
Q ss_pred hHhhhhHHhhh-cChHHHHHHHhhCCCCcHHHHHHHHHHhhhcCCCcccc
Q psy8635 17 FQIELEFIQCL-ANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKY 65 (177)
Q Consensus 17 FE~ELEFVQ~L-ANP~YL~~LAq~gyf~d~~FinYLkYL~YWk~PeYaky 65 (177)
-+.+++++..| -...=+.||++.++|++ .| ++||.-++-+....-
T Consensus 53 L~~~l~~l~~l~ft~eei~yL~~~~~~~~-~f---l~~L~~~~~~~~i~a 98 (137)
T d2f7fa2 53 LERLVNYLENLTFTESDIAYLREVEEYPE-DF---LTYLANFEFKCTVRS 98 (137)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHTSCCCH-HH---HHHHHTCCCCCEEEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhCCCCCH-HH---HHHHHhCCCCceEEE
Confidence 35677788777 56778889998898864 44 555555555554433
No 4
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}
Probab=23.11 E-value=37 Score=23.95 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=21.4
Q ss_pred HhhhcChHHHHHHHhhCCCCcHHHHHHHH
Q psy8635 24 IQCLANPNYLNFLAQRGYLKDEAFVNYLK 52 (177)
Q Consensus 24 VQ~LANP~YL~~LAq~gyf~d~~FinYLk 52 (177)
.+...|..+++-|+ .|-+..+.|..||.
T Consensus 14 w~~~~~HPFv~~l~-~GtL~~~~f~~yl~ 41 (225)
T d1to9a_ 14 WEGSFVHPFVQGIG-DGTLPIDRFKYYVL 41 (225)
T ss_dssp HHHHHTCHHHHHHH-TTCSCHHHHHHHHH
T ss_pred HHHHHCCHHHHHHh-cCCCCHHHHHHHHH
Confidence 34445566888888 48899999999875
No 5
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=16.62 E-value=13 Score=27.15 Aligned_cols=32 Identities=19% Similarity=0.457 Sum_probs=25.8
Q ss_pred chhheeeecCccceeeecCCCCccccccCCCC
Q psy8635 145 EEVWTVLWGPPINCLLTTSSPSNVLNLHDNKP 176 (177)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (177)
.++|+.++|-++..|-+.....++..++||.|
T Consensus 71 k~~W~~lfgk~~d~L~~~~~~~~~y~I~d~~~ 102 (168)
T d2j3wb1 71 VNVWKALFGKEADKLEQANDDDKTYYIIEKEP 102 (168)
T ss_dssp THHHHHHHSSCCSEEEEETTEEEEEEEEESSC
T ss_pred HHHHHHHcCcCcccccccCCCCceEEEEcCCc
Confidence 57999999999998887666667777777754
No 6
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=15.51 E-value=42 Score=24.32 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=21.9
Q ss_pred hhHhhhhHHhhhc-ChHHHHHHHhhCC-----CCcHHHHHHHH
Q psy8635 16 RFQIELEFIQCLA-NPNYLNFLAQRGY-----LKDEAFVNYLK 52 (177)
Q Consensus 16 RFE~ELEFVQ~LA-NP~YL~~LAq~gy-----f~d~~FinYLk 52 (177)
..+.+++++..|. .+.=+.||+.... +-+++|+.||+
T Consensus 68 gL~~~i~~l~~lrFt~eei~yL~~~~~~~~~~~f~~~fl~~L~ 110 (160)
T d1ybea2 68 ELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLS 110 (160)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHSCSSSCSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHhcCCccccCcCCHHHHHHHh
Confidence 3455666666664 3556788887632 23566666555
No 7
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=13.94 E-value=21 Score=25.82 Aligned_cols=33 Identities=24% Similarity=0.711 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHhhhc-CCCccccc
Q psy8635 32 YLNFLAQRGYLKDEAFVNYLKYLLYWK-EPQYAKYL 66 (177)
Q Consensus 32 YL~~LAq~gyf~d~~FinYLkYL~YWk-~PeYakyL 66 (177)
..+||..+|+ |..|.+||.=+..+| +-+|.++|
T Consensus 141 l~~yLeeRGI--d~~la~fl~~~~~~kE~~eYi~WL 174 (182)
T d1yqfa1 141 VMTYLEKRGV--DEKLGEFVVLYSFWAEQQDYEAWL 174 (182)
T ss_dssp HHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999998 888888886554443 45666554
No 8
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.43 E-value=2e+02 Score=19.81 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHhh----hcCCCccccccccchHHHHHhhccHHHHHHhhChHHHHHHHHHHHHHH
Q psy8635 44 DEAFVNYLKYLLY----WKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLW 104 (177)
Q Consensus 44 d~~FinYLkYL~Y----Wk~PeYakyL~YP~cL~~LdLLQ~e~FR~~i~n~~~~~~i~~Qq~~~W 104 (177)
..+|+-|++|+.. .++|+|.+. ......+|-...++..|...+..+-.=...+-.|
T Consensus 52 E~AYily~Ry~~L~eki~kHpdyk~~-----~~~~~~~l~~~~~~~~l~~~E~Lk~~L~~rYe~~ 111 (134)
T d2a9ua1 52 ERAYVLYMKYVTVYNLIKKRPDFKQQ-----QDYFHSILGPGNIKKAVEEAERLSESLKLRYEEA 111 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHHT-----HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccc-----hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999865 467887652 3345555555566766665544443334444444
No 9
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}
Probab=13.32 E-value=1.2e+02 Score=20.58 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=28.4
Q ss_pred hccHHHHHHhhChHHHHHHHHHHHHHHhh---------hhHHHHHHhHHHHh
Q psy8635 78 LQYEHFRREIVNSQCAKFIDDQQVLLWQH---------YTRKRTKLLNEAAQ 120 (177)
Q Consensus 78 LQ~e~FR~~i~n~~~~~~i~~Qq~~~Wq~---------y~r~R~~~~~~~~e 120 (177)
++.|+.++-+.+++.++.+...|..||.. |-..|.++-+.|+.
T Consensus 65 ~~~Pe~~~~f~~~~~~erlk~~~~~~~~~lf~g~~D~~y~~~~~~IG~~H~r 116 (169)
T d1or4a_ 65 DHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVIDDEFIEKRNRIASIHLR 116 (169)
T ss_dssp TTSHHHHHHHHHHCCHHHHHHHHHHHHHHTTSSCEEHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHcCccchHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 45566666666666677778888888864 44556666666653
No 10
>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}
Probab=11.12 E-value=34 Score=22.31 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=15.0
Q ss_pred hhhcCCCccccccccchHHHHH
Q psy8635 55 LYWKEPQYAKYLKYPMCLYFLD 76 (177)
Q Consensus 55 ~YWk~PeYakyL~YP~cL~~Ld 76 (177)
+|-|+|.|.+||.=|+.=.+|.
T Consensus 37 ~Y~kdP~~~~yv~spnarkv~~ 58 (67)
T d1tuka1 37 QYAKDPTYGQYIRSPHARDTLT 58 (67)
T ss_dssp HHTTCTTTHHHHTSHHHHHHHH
T ss_pred eecCCccHHHHcCCHHHHHHHH
Confidence 5677888888877666555543
Done!