RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8635
         (177 letters)



>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase
           2A regulatory subunit B56-gamma {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 343

 Score = 28.2 bits (63), Expect = 0.51
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 23  FIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEH 82
           F++ L +P++   +A++    D+ FV  L  L   ++P+   +LK  +   +   L    
Sbjct: 112 FLRFLESPDFQPNIAKK--YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA 169

Query: 83  FRREIVNSQCAKFID 97
           + R+ +N+   +FI 
Sbjct: 170 YIRKQINNIFYRFIY 184


>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN
           {Campylobacter jejuni [TaxId: 197]}
          Length = 255

 Score = 27.3 bits (60), Expect = 0.88
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 12  QQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKY 68
            Q + F + LE +      +       +  +K     N L +   WK   Y +++  
Sbjct: 62  SQNINFDVALEMLASTEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNV 118


>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 328

 Score = 26.2 bits (57), Expect = 2.3
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 89  NSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPNDIQPRPEEVW 148
           +   A   D   ++ +Q   +  +K+   AA  + SG          +P+ +   P   W
Sbjct: 206 DWISANLDDGSALMAFQIRGKDDSKIWAYAALRDASGHTR-----LFTPDQVSFHPIRTW 260

Query: 149 TV 150
             
Sbjct: 261 RS 262


>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 283

 Score = 24.8 bits (53), Expect = 6.8
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 4/74 (5%)

Query: 7   PETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYL 66
               ++QR+ F  E   +   ++ N +      G +     +  +               
Sbjct: 46  AGYTEKQRVDFLGEAGIMGQFSHHNIIRLE---GVISKYKPM-MIITEYMENGALDKFLR 101

Query: 67  KYPMCLYFLDLLQY 80
           +       L L+  
Sbjct: 102 EKDGEFSVLQLVGM 115


>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human
           immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 154

 Score = 24.0 bits (51), Expect = 10.0
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 79  QYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPN 138
             E   +E+           +     +   +    + N+  +  I G    ER  ++   
Sbjct: 95  VVESMNKELKKIIGQVRDQAE---HLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT 151

Query: 139 DIQ 141
           DIQ
Sbjct: 152 DIQ 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,078
Number of extensions: 31148
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 14
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)