BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8637
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O93610|DPOD2_XENLA DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1
Length = 463
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 114/178 (64%), Gaps = 6/178 (3%)
Query: 8 SYTRPT-ADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKL 66
++TR + Y N S FRL + +++Q+AHIYA RL +MR L+ Q+WG ++V KL
Sbjct: 23 TFTRVSNTQYSNCSSIFRLGERTFTRQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKL 82
Query: 67 SDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQ 126
+L E+C +IGTLFK +L+P+IL+EISEE L+PQP ++SDSDELILEDELQ
Sbjct: 83 CELQ--GGEKCCVIGTLFKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQ 140
Query: 127 RIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYAT-PVFKPRTTLSNNENKYV 183
RI L G D+ VTG V+A+ G GKF V D C + PV P LS E+++V
Sbjct: 141 RIKLEGATDVQQLVTGAVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLS--EDRFV 196
>sp|O35654|DPOD2_MOUSE DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=2
Length = 469
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +++Q+AHIYA RL +MR L++R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+EISEE LVPQP + ++ DEL+LEDELQRI L
Sbjct: 88 G--EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +G+F+V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFA 179
>sp|Q6AXY4|DPOD2_RAT DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1
SV=1
Length = 469
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +++Q+AHIYA RL +MR L++R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+EISEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 G--EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF+V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFA 179
>sp|P49004|DPOD2_BOVIN DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2
Length = 469
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P Y N SQ FRL + +S+Q+AHIYA RL +MR L++R Q+WG V V KL +L
Sbjct: 28 PVVTYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DELILEDELQRI L
Sbjct: 88 G--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLE 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFA 179
>sp|P49005|DPOD2_HUMAN DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1
Length = 469
Score = 157 bits (398), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +S+Q+AHIYA RL +MR L R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
>sp|Q9W088|DPOD2_DROME DNA polymerase delta small subunit OS=Drosophila melanogaster
GN=CG12018 PE=2 SV=1
Length = 431
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 89/149 (59%)
Query: 16 YKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTE 75
Y+NLS FRL DY KQF H+YA RL +M L +KWG + KL +L
Sbjct: 9 YENLSSIFRLKGHDYQKQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDV 68
Query: 76 ECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNID 135
C++IGT+FKHQ KP+IL++ISEE +L PQP ++ D+++LEDELQR+ L G ++
Sbjct: 69 HCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVRLQGKLN 128
Query: 136 IHNQVTGVVVAIKGTPVGNGKFKVSDVCY 164
TGVV A G +G F V D+ +
Sbjct: 129 GQLLATGVVCAALGGTDSDGFFNVEDILF 157
>sp|Q9LRE5|DPOD2_ORYSJ DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica
GN=POLD2 PE=2 SV=1
Length = 429
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 7/182 (3%)
Query: 11 RPTADYKNLSQCFRLASKDY-SKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDL 69
R A+Y NL + + + + Y +Q++HIY RL+ MR L A V W + V + L
Sbjct: 3 RKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVP-SWKPHLPVTTVLGL 61
Query: 70 NETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIP 129
E ++C+I+GTL+KH +LKP+IL E S+E +P + +F+ D LILEDE R+
Sbjct: 62 EEG--KDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVT 119
Query: 130 LHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTL-SNNENKYVNHVDA 188
L G I VTGVV+A+ G G F V D+ A P+ TL S NE+KYV V
Sbjct: 120 LAGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAG--IPPQITLPSINEDKYVVFVSG 177
Query: 189 FT 190
+
Sbjct: 178 LS 179
>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2
PE=2 SV=2
Length = 440
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 7 KSYTRPTADYKNLSQCFRLASKDY-SKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLK 65
K + R +DY +L + F + + Y +Q++ IY RL+ MR LL ++ W + V K
Sbjct: 7 KIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMR-TLLYSLAPTWKSHLPVCK 65
Query: 66 LSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDEL 125
+ L + +EC+I+GTLFKH +LKP +L E S+E + P + +F+ D LILEDE
Sbjct: 66 VLGLEKG--KECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDES 123
Query: 126 QRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYV 183
R+ L G+ + VTGVVVA+ G G+F V DV A + + E+KYV
Sbjct: 124 GRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYV 182
>sp|P46957|DPOD2_YEAST DNA polymerase delta small subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1
Length = 487
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 18 NLSQCFRLASK--DYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVS-----VLKLSD-L 69
N S F+L K DY Q+ HIY RL RE +L ++W + VLK L
Sbjct: 35 NKSNPFQLCYKKRDYGSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVL 94
Query: 70 NETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQ--PQHTHFVSDSDELILEDELQR 127
+ + C +G+++ + KPN+L E+ + P +T SDE++LEDE R
Sbjct: 95 DIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGR 154
Query: 128 IPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPV 168
+ L G+ I +TGVVV I G G F+V D+CY TP+
Sbjct: 155 VLLVGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPL 196
>sp|P87324|DPOD2_SCHPO DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc1 PE=1 SV=1
Length = 462
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 23 FRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGT 82
L+ + YS+Q+A IY RL +R + S+KW + ++ D+ E+C ++ T
Sbjct: 18 LSLSQQTYSQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSD--EDCWVVAT 75
Query: 83 LFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD------ELILEDELQRIPLHGN-ID 135
+ LKPN++ ++++ +V + + +VS D E LED+ RI G+ +
Sbjct: 76 AYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLY 135
Query: 136 IHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENK 181
VTGVV+A+ G G+F V DVC+ +F ++ +E++
Sbjct: 136 DAGVVTGVVLAVLGHEDEQGRFVVVDVCFPG-IFSHSIPMTTDESQ 180
>sp|Q19366|DPOD2_CAEEL Probable DNA polymerase delta small subunit OS=Caenorhabditis
elegans GN=F12F6.7 PE=3 SV=1
Length = 451
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 19/210 (9%)
Query: 15 DYKNLSQCFRLASKD----YSKQFAHIYAVRLNKMRECLLARVSQKWGKS-VSVLKLSDL 69
+YKN+S + L KD +++Q+ +Y RL +++ +L ++ GK + +LSD
Sbjct: 10 NYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGKFTHSQLSDA 69
Query: 70 NETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHT---------HFVSDSDELI 120
+ EE ++G + K +P+ILK + E K+ + S D +
Sbjct: 70 KQD--EEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSIEDRIE 127
Query: 121 LEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNEN 180
LE + Q + L GNI + TG V + G G F V+ + + + V P+ +
Sbjct: 128 LESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFHVNRLVWPS-VKVPKKVAVDGTI 186
Query: 181 KYVNHVDAFTD--DDFIRLWEGLFFSMWMS 208
+V+ +D D DD + + F + WM+
Sbjct: 187 AFVSGLDLTGDLEDDRLTISGLEFMADWMN 216
>sp|Q9VJZ7|RRP1L_DROME Ribosomal RNA processing protein 1 homolog OS=Drosophila
melanogaster GN=Nnp-1 PE=1 SV=1
Length = 687
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 26/27 (96%)
Query: 189 FTDDDFIRLWEGLFFSMWMSDKPLIQK 215
F +DDF+R+W+GL+++MWMSDKPL+Q+
Sbjct: 76 FNEDDFMRIWKGLYYTMWMSDKPLVQE 102
>sp|P56182|RRP1_HUMAN Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens
GN=RRP1 PE=1 SV=1
Length = 461
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 186 VDAFTDDDFIRLWEGLFFSMWMSDKPLIQK 215
FT D+ +++W+GLF+ MWM DKPL+Q+
Sbjct: 44 AGGFTHDELLKVWKGLFYCMWMQDKPLLQE 73
>sp|P56183|RRP1_MOUSE Ribosomal RNA processing protein 1 homolog A OS=Mus musculus
GN=Rrp1 PE=2 SV=2
Length = 494
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 179 ENKYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQK 215
E + FT D+ +++W+GLF+ MWM DKPL Q+
Sbjct: 37 EARSQRATGGFTPDELLKVWKGLFYCMWMQDKPLQQE 73
>sp|Q9Y7M6|RRP1_SCHPO Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC9B6.07 PE=3 SV=1
Length = 217
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 181 KYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQK 215
++++ F DF++LW+GLF+ MWM+DKPL Q+
Sbjct: 28 RFLSQKKKFERLDFLKLWKGLFYCMWMADKPLYQQ 62
>sp|Q14684|RRP1B_HUMAN Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens
GN=RRP1B PE=1 SV=3
Length = 758
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 181 KYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQK 215
K F+ ++ +++W+GLF+ MW+ D+PL+Q+
Sbjct: 38 KTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQE 72
>sp|Q91YK2|RRP1B_MOUSE Ribosomal RNA processing protein 1 homolog B OS=Mus musculus
GN=Rrp1b PE=2 SV=2
Length = 724
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 24/28 (85%)
Query: 188 AFTDDDFIRLWEGLFFSMWMSDKPLIQK 215
+F+ ++ +++W+GLF+ MW+ D+PL+Q+
Sbjct: 45 SFSQEELLKIWKGLFYCMWVQDEPLLQE 72
>sp|P35178|RRP1_YEAST Ribosomal RNA-processing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP1 PE=1 SV=2
Length = 278
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 12/52 (23%)
Query: 176 SNNENKYVNHVDA---------FTDD---DFIRLWEGLFFSMWMSDKPLIQK 215
SNN VN ++A F ++ +F +LW+GL+++MW SD+P Q+
Sbjct: 12 SNNRKTRVNALEALKKYLTAKQFKENKQIEFNKLWKGLYYAMWFSDRPRPQQ 63
>sp|Q54WY5|RRP1_DICDI Ribosomal RNA processing protein 1 homolog OS=Dictyostelium
discoideum GN=rrp1 PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 187 DAFTDDDFIRLWEGLFFSMWMSDKPLIQ 214
+ T+ +++W+GLF S++ +DKP++Q
Sbjct: 53 EKLTEIQLLKIWKGLFLSLYNTDKPIVQ 80
>sp|C1DTW6|PNP_SULAA Polyribonucleotide nucleotidyltransferase OS=Sulfurihydrogenibium
azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=pnp
PE=3 SV=1
Length = 707
Score = 34.3 bits (77), Expect = 0.66, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 75 EECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQ 126
EE ++ +F HQ++K L E+ EEL+L + D +E+IL+D+L+
Sbjct: 199 EEDILEAMMFGHQEIKK--LIELQEELRLKCGKEKIQVAIDEEEIILKDKLK 248
>sp|Q18674|RRP1_CAEEL Ribosomal RNA processing protein 1 homolog OS=Caenorhabditis
elegans GN=C47E12.7 PE=3 SV=2
Length = 397
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 189 FTDDDFIRLWEGLFFSMWMSDKPLIQ 214
F D D +RL +GL + MWM DK ++Q
Sbjct: 44 FDDADLMRLCKGLHYVMWMQDKMILQ 69
>sp|B1GYZ9|MNME_UNCTG tRNA modification GTPase MnmE OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=mnmE PE=3 SV=2
Length = 456
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 42 LNKMRECLLARVSQKWGKS-VSVLKLSDLNETDTEECVIIGTLFK-----HQQLK----P 91
+N ++E +A +S GKS ++V++LS N IIG +FK QQ+K
Sbjct: 1 MNYLKEDTIAALSTAAGKSAIAVIRLSGENSFQ-----IIGKIFKTHSKPEQQVKHGYIT 55
Query: 92 NILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTP 151
+ +++ E L + HT+ + L I HGN I N++ ++ P
Sbjct: 56 DGIEKKDEVLCTFFKAPHTY---------TGENLVEIAAHGNPVIINEILNLLYKNGARP 106
Query: 152 VGNGKF 157
G G+F
Sbjct: 107 AGPGEF 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,410,699
Number of Sequences: 539616
Number of extensions: 3420060
Number of successful extensions: 7886
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7849
Number of HSP's gapped (non-prelim): 30
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)