Query psy8637
Match_columns 216
No_of_seqs 131 out of 362
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:57:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0j_A DNA polymerase subunit 100.0 2.2E-58 7.4E-63 433.6 16.9 200 7-210 29-232 (476)
2 3flo_A DNA polymerase alpha su 94.8 0.33 1.1E-05 45.4 12.4 102 34-164 12-122 (460)
3 2kbn_A Conserved protein; nucl 78.6 2.7 9.4E-05 31.1 4.6 76 62-160 4-84 (109)
4 1o7i_A SSB, SSO2364, single st 78.5 2.2 7.6E-05 31.9 4.1 42 117-158 40-84 (119)
5 3dm3_A Replication factor A; p 76.0 3 0.0001 30.9 4.1 74 63-159 5-89 (105)
6 2k50_A Replication factor A re 73.4 3.3 0.00011 30.4 3.8 73 63-151 7-83 (115)
7 3e0e_A Replication protein A; 67.2 6.9 0.00024 28.2 4.3 71 65-152 4-77 (97)
8 2k75_A Uncharacterized protein 59.8 13 0.00046 27.1 4.8 76 64-159 4-82 (106)
9 2kct_A Cytochrome C-type bioge 41.3 79 0.0027 22.9 6.3 47 118-164 32-83 (94)
10 1j6q_A Cytochrome C maturation 33.3 1.1E+02 0.0037 23.7 6.3 48 117-164 55-104 (136)
11 1jmc_A Protein (replication pr 25.9 33 0.0011 28.0 2.3 35 118-152 169-207 (246)
12 2cqa_A RUVB-like 2; TIP48, TIP 25.9 67 0.0023 23.6 3.7 36 87-133 48-83 (95)
13 3c9p_A Uncharacterized protein 25.6 13 0.00045 28.5 -0.2 19 136-154 72-90 (123)
14 3nem_A Aspartyl-tRNA synthetas 25.4 53 0.0018 30.0 3.7 47 118-164 36-97 (438)
15 1ug8_A Poly(A)-specific ribonu 23.6 1.2E+02 0.0041 21.8 4.6 21 45-65 41-61 (87)
16 1nnx_A Protein YGIW; structura 23.5 84 0.0029 23.4 3.9 40 116-155 52-94 (109)
17 1n9w_A Aspartyl-tRNA synthetas 23.4 69 0.0024 29.0 4.1 47 118-166 33-87 (422)
18 4gop_B Putative uncharacterize 22.3 1.2E+02 0.0042 22.5 4.8 42 118-159 56-106 (136)
19 1c0a_A Aspartyl tRNA synthetas 21.9 1.3E+02 0.0043 28.5 5.7 49 118-166 35-104 (585)
20 3kdf_D Replication protein A 3 21.7 86 0.0029 23.3 3.7 44 117-160 50-102 (132)
21 2xgt_A Asparaginyl-tRNA synthe 21.6 92 0.0031 28.3 4.5 48 118-165 32-95 (435)
22 4ex5_A Lysine--tRNA ligase; st 21.4 77 0.0026 29.8 4.0 47 118-164 106-165 (529)
23 1e1o_A Lysyl-tRNA synthetase, 21.4 90 0.0031 29.0 4.5 47 118-164 84-144 (504)
24 4ah6_A Aspartate--tRNA ligase, 20.9 1.1E+02 0.0038 29.3 5.1 50 118-167 41-113 (617)
25 2f3x_A Transcription factor FA 20.8 1E+02 0.0035 23.6 4.1 45 42-88 16-67 (157)
26 2oj5_A Viral attachment protei 20.7 27 0.00091 27.8 0.6 44 121-167 10-63 (165)
No 1
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-58 Score=433.56 Aligned_cols=200 Identities=41% Similarity=0.687 Sum_probs=151.9
Q ss_pred CCccccc-eecccCCCceeeCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCcceeeeeecccCCCCeEEEEEEEEe
Q psy8637 7 KSYTRPT-ADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFK 85 (216)
Q Consensus 7 ~~~~R~~-~~y~~~s~rF~l~~~~y~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~kll~l~~~~g~~cvvIGTlyK 85 (216)
..++|.+ ++|+++++||.+++|+|++||++||++||++||+++.++|++||++.++++||+|+ ++|++|||||||||
T Consensus 29 ~~~~R~~~~~y~~~~~~F~l~~~~y~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~klldl--~~ge~c~viGTvyk 106 (476)
T 3e0j_A 29 ATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCEL--QPEEKCCVVGTLFK 106 (476)
T ss_dssp CCEECCCTTCEEECCGGGCC------------CHHHHHHHHHHHHHHHHHHSCSCCCBCCSSSC--CTTCCEEEEEEEEE
T ss_pred cccccccCccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHhhcc--cCCCEEEEEEEEEe
Confidence 3679999 99999999999999999999999999999999999999999999988999999999 68999999999999
Q ss_pred eCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEEeccCCCCceeeeEEEEEeccCCCCcEEEEEEEe-
Q psy8637 86 HQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY- 164 (216)
Q Consensus 86 ~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~G~i~~~~lVTGvVvaV~G~~~~~G~F~V~di~~- 164 (216)
+|+||||||+||++|+++.|++++.+|++++|+++||||||||+|.|.++++.+|||+||||+|++.++|+|+|+|+||
T Consensus 107 ~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDesGRv~L~g~~~~~~lVTG~VvaV~G~~~~~G~F~V~di~~P 186 (476)
T 3e0j_A 107 AMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 186 (476)
T ss_dssp EC----------------------CCCCCSSCEEEEECSSCEEEEEESCCTTTCCTTCEEEEEEEECTTSSEEEEEEEEC
T ss_pred cccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECCCCEEEEEEEcccccccCCcEEEEEEEEcCCCeEEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred cCCCCCCcccCCCCCCcceeecCCCCHHHH--HHHhhHHHhhhhhcCC
Q psy8637 165 ATPVFKPRTTLSNNENKYVNHVDAFTDDDF--IRLWEGLFFSMWMSDK 210 (216)
Q Consensus 165 ~~~pq~p~~~~~~~~~~yv~lvsgl~~~d~--~~l~kgl~~~~w~~d~ 210 (216)
++|||+|++....+ +||||+|||++..- ...-....+..|+++.
T Consensus 187 d~ppq~~~~~~~~~--~~ialVSGL~igs~~~~~~~~~~ll~d~L~G~ 232 (476)
T 3e0j_A 187 DLAPQKPAPPLDTD--RFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQ 232 (476)
T ss_dssp BCCCCCCCCCCSSC--CEEEEECCCCBTSSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCC--CEEEEECCcccCCCcccchHHHHHHHHHHcCC
Confidence 99999998765544 99999999997542 2233557888999864
No 2
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.33 Score=45.37 Aligned_cols=102 Identities=14% Similarity=0.231 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh---hcCCCcceeeeeecccCCCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCC
Q psy8637 34 FAHIYAVRLNKMRECLLARVSQ---KWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHT 110 (216)
Q Consensus 34 Y~~iY~~RL~~Lr~~l~~~a~~---kw~~~~~i~kll~l~~~~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~ 110 (216)
-+.+-..|+..+...+.+.-.- .||+ . .+ ......+++|-|..+... + | .
T Consensus 12 ~~~vLd~~I~~~~~~~~~~~~~~~~~f~~-p------~~--~sq~~v~~vGRI~~Ds~~-~--------e---------g 64 (460)
T 3flo_A 12 ASDVLDDQIESFTKIIQNHYKLSPNDFAD-P------TI--QSQSEIYAVGRIVPDSPT-Y--------D---------K 64 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGBCC-T------TS--CCSSCEEEEEEEEESSSS-C--------C---------S
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccCC-c------cc--CccccEEEEEEEeeCCCC-C--------C---------C
Confidence 3455566777776666554321 2443 0 12 467789999999998521 0 0 0
Q ss_pred CcCCCCCeEEEec-----CCCcEEEEec-cCCCCceeeeEEEEEeccCCCCcEEEEEEEe
Q psy8637 111 HFVSDSDELILED-----ELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 164 (216)
Q Consensus 111 ~y~s~~D~l~LED-----esgRI~L~G~-i~~~~lVTGvVvaV~G~~~~~G~F~V~di~~ 164 (216)
+ -++..++||= ...||+|.=+ +..-.+..|-|||++|+-...+.|.|++++-
T Consensus 65 k--Ln~~Sl~LE~sr~~g~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~ 122 (460)
T 3flo_A 65 F--LNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILP 122 (460)
T ss_dssp C--CCTTSEEEECCHHHHTTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECC
T ss_pred C--cchhheEEEeccccCCCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeecc
Confidence 1 1245788983 3689999876 7778899999999999854556799999884
No 3
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=78.63 E-value=2.7 Score=31.11 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=48.2
Q ss_pred ceeeeeecccCC-CCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEE--eccCCCC
Q psy8637 62 SVLKLSDLNETD-TEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH--GNIDIHN 138 (216)
Q Consensus 62 ~i~kll~l~~~~-g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~--G~i~~~~ 138 (216)
++.+|.||+ + ++..-++|.|...-. |+ ....|. .+.|.|+||+|+++ ++-+...
T Consensus 4 ~~~kI~dl~--~~~~~v~v~~~V~~~~~--~~---------------~~~~~~----~~~l~DeTG~I~~t~W~~~~~~~ 60 (109)
T 2kbn_A 4 QLTKIVDIV--ENGQWANLKAKVIQLWE--NT---------------HESISQ----VGLLGDETGIIKFTIWKNAELPL 60 (109)
T ss_dssp CBCCTTTCC--STTCEEEEEEEEEEEEE--CC---------------CSSEEE----EEEEECTTCCEEEEEEGGGCCCC
T ss_pred CceEHHHCC--CCCCcEEEEEEEEEeEc--CC---------------CCeEEE----EEEEECCCCeEEEEEECcccccc
Confidence 445677883 4 555667777765432 11 001121 28999999999998 3234557
Q ss_pred ceeeeEEEEE-eccCC-CCcEEEE
Q psy8637 139 QVTGVVVAIK-GTPVG-NGKFKVS 160 (216)
Q Consensus 139 lVTGvVvaV~-G~~~~-~G~F~V~ 160 (216)
+-.|-+|-+. |.... +|.+++.
T Consensus 61 ~~~G~~V~i~n~~v~~~~G~~~L~ 84 (109)
T 2kbn_A 61 LEQGESYLLRSVVVGEYNDRFQVQ 84 (109)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEE
T ss_pred cCCCCEEEEEEEEEEEECCEEEEE
Confidence 8889999999 55443 5666554
No 4
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=78.54 E-value=2.2 Score=31.88 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=29.6
Q ss_pred CeEEEecCCCcEEEEec-cCCCCceeeeEEEEE-eccCC-CCcEE
Q psy8637 117 DELILEDELQRIPLHGN-IDIHNQVTGVVVAIK-GTPVG-NGKFK 158 (216)
Q Consensus 117 D~l~LEDesgRI~L~G~-i~~~~lVTGvVvaV~-G~~~~-~G~F~ 158 (216)
-.+.|.|+||+|+++-= -....+-.|-|++|. |.... +|.++
T Consensus 40 ~~~~l~D~TG~I~~tlW~~~~~~~~~G~vv~i~~g~v~~~~g~~q 84 (119)
T 1o7i_A 40 SEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTTAFKGQVQ 84 (119)
T ss_dssp EEEEEEETTEEEEEEEEGGGTTCCCTTCEEEEEEEEEEEETTEEE
T ss_pred EEEEEEeCCCEEEEEEECChhhcCCCCCEEEEEeEEEEEeCCEEE
Confidence 36899999999999742 223457789999999 66543 45444
No 5
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=75.97 E-value=3 Score=30.87 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=49.7
Q ss_pred eeeeeecccCCCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCCCC------CeEEEecCCCcEEEE--ec-
Q psy8637 63 VLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDS------DELILEDELQRIPLH--GN- 133 (216)
Q Consensus 63 i~kll~l~~~~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~------D~l~LEDesgRI~L~--G~- 133 (216)
+.+|-+| .++..+-|+|.|-.-.+.++ |...+ =.+.|.|+||+|+++ |+
T Consensus 5 ~~~I~dL--~~~~~v~v~g~V~~~~~~r~--------------------~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~ 62 (105)
T 3dm3_A 5 TYNIGEL--SPGMTATFEGEVISALPIKE--------------------FKRADGSIGKLKSFIVRDETGSIRVTLWDNL 62 (105)
T ss_dssp EECGGGC--CSSEEEEEEEEEEEEEEEEE--------------------EECTTSCEEEEEEEEEEETTEEEEEEEEGGG
T ss_pred ceEHHHC--CCCCeEEEEEEEEECCCceE--------------------EEcCCCCeeEEEEEEEECCCCcEEEEEECcc
Confidence 3466677 57777889999876544331 11111 158999999999998 44
Q ss_pred cCCCCceeeeEEEEEeccCC--CCcEEE
Q psy8637 134 IDIHNQVTGVVVAIKGTPVG--NGKFKV 159 (216)
Q Consensus 134 i~~~~lVTGvVvaV~G~~~~--~G~F~V 159 (216)
.+. .+-.|-|+++.|.... .|..++
T Consensus 63 a~~-~l~~Gdvv~i~g~vk~~~~g~~eL 89 (105)
T 3dm3_A 63 TDI-DVGRGDYVRVRGYIREGYYGGLEC 89 (105)
T ss_dssp GGS-CCCTTCEEEEEEEEEECTTSSEEE
T ss_pred ccc-ccCCCCEEEEEEEEEEccCCCEEE
Confidence 333 7889999999996543 345544
No 6
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=73.36 E-value=3.3 Score=30.43 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=46.9
Q ss_pred eeeeeecccCCCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEE--ec-c-CCCC
Q psy8637 63 VLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH--GN-I-DIHN 138 (216)
Q Consensus 63 i~kll~l~~~~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~--G~-i-~~~~ 138 (216)
..+|.+| ++|+.+-|+|.|-...+.+. +....+ .... -=.+.|.|+||+|+++ ++ - ....
T Consensus 7 ~~~I~~L--~~g~~v~i~~~V~~~~~~~~-----~~~k~G-----~~~~----~~~~~l~D~TG~I~~t~w~~~~~~~~~ 70 (115)
T 2k50_A 7 MDTISKL--EEGAETPVTGRVMKISSPRT-----FTTRKG-----REGK----LANVIIADDTGELRAVFWTENIKLLKK 70 (115)
T ss_dssp CCCTTTC--CTTCEEEEEEEEEEECCCEE-----CCCTTS-----SCCE----EEEEEEEETTEEEEEEEETTGGGGGGT
T ss_pred eEEHHHC--CCCCEeEEEEEEEECCCceE-----EEcCCC-----CEEE----EEEEEEEeCCCeEEEEEeCchhhhhhc
Confidence 4456777 58999889998876534331 100000 0001 1258899999999998 43 1 1246
Q ss_pred ceeeeEEEEEecc
Q psy8637 139 QVTGVVVAIKGTP 151 (216)
Q Consensus 139 lVTGvVvaV~G~~ 151 (216)
+-.|-|++|.|..
T Consensus 71 l~~G~vv~i~g~~ 83 (115)
T 2k50_A 71 FREGDVIRIKDVN 83 (115)
T ss_dssp CCTTSEEEEEEEE
T ss_pred CCCCCEEEEEeeE
Confidence 8899999999987
No 7
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=67.23 E-value=6.9 Score=28.20 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=45.5
Q ss_pred eeeecccCCCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEE--ec-cCCCCcee
Q psy8637 65 KLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH--GN-IDIHNQVT 141 (216)
Q Consensus 65 kll~l~~~~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~--G~-i~~~~lVT 141 (216)
+|-+| +++..+-|+|.|-...+.++ +.+..+ .... =-.+.|.|+||+|+++ ++ .+. .+-.
T Consensus 4 kI~dl--~~g~~v~i~~~V~~~~~~r~-----~~~~~G-----~~~~----v~~~~l~DeTG~I~~tlW~~~~~~-~i~~ 66 (97)
T 3e0e_A 4 KISEL--MPNLSGTINAEVVTAYPKKE-----FSRKDG-----TKGQ----LKSLFLKDDTGSIRGTLWNELADF-EVKK 66 (97)
T ss_dssp CGGGC--CTTEEEEEEEEEEEECCCEE-----EC---------CCEE----EEEEEEEETTEEEEEEEEGGGGGC-CCCT
T ss_pred EHHHC--CCCCcEEEEEEEEECCCceE-----EEcCCC-----CeeE----EEEEEEECCCCcEEEEEECCcccc-ccCC
Confidence 46678 57877889999877654432 111100 0000 1258999999999998 33 322 6888
Q ss_pred eeEEEEEeccC
Q psy8637 142 GVVVAIKGTPV 152 (216)
Q Consensus 142 GvVvaV~G~~~ 152 (216)
|-|+.|.|...
T Consensus 67 Gdvv~i~g~v~ 77 (97)
T 3e0e_A 67 GDIAEVSGYVK 77 (97)
T ss_dssp TCEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 99999999753
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=59.77 E-value=13 Score=27.14 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=44.2
Q ss_pred eeeeecccCCCCe-EEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEEeccCCCCceee
Q psy8637 64 LKLSDLNETDTEE-CVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTG 142 (216)
Q Consensus 64 ~kll~l~~~~g~~-cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~G~i~~~~lVTG 142 (216)
.+|.|| +++.. +-++|.|....+.+ + .++ + ....|. .+.|.|+||+|+++-= +.. +-.|
T Consensus 4 ~kI~dl--~pg~~~v~v~~~V~~~~~~~-~-----~k~-G-----~~~~v~----~~~l~DeTG~I~~tlW-~~~-l~~G 63 (106)
T 2k75_A 4 VKIRDV--SLSTPYVSVIGKITGIHKKE-Y-----ESD-G-----TTKSVY----QGYIEDDTARIRISSF-GKQ-LQDS 63 (106)
T ss_dssp CCSTTC--CTTCSEEEEEEEEEEEEEEE-E-----EET-T-----EEEEEE----EEEEECSSCEEEEEEE-SSC-CCTT
T ss_pred EEHHHc--CCCCceEEEEEEEEEccccc-c-----ccC-C-----CeeEEE----EEEEEcCCCeEEEEEE-cCc-cCCC
Confidence 356677 46766 56777776654221 0 000 0 000121 5899999999999852 223 8889
Q ss_pred eEEEEE-eccCC-CCcEEE
Q psy8637 143 VVVAIK-GTPVG-NGKFKV 159 (216)
Q Consensus 143 vVvaV~-G~~~~-~G~F~V 159 (216)
-||-+. |.... +|.+++
T Consensus 64 dvv~i~ng~v~~~~g~~~L 82 (106)
T 2k75_A 64 DVVRIDNARVAQFNGYLSL 82 (106)
T ss_dssp EEEEEEEEEEEEETTEEEE
T ss_pred CEEEEEeeEEeEECCEEEE
Confidence 999998 55432 444443
No 9
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=41.33 E-value=79 Score=22.92 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=37.8
Q ss_pred eEEEecC---CCcEEEEec-cCCCCceeeeEEEEEeccCC-CCcEEEEEEEe
Q psy8637 118 ELILEDE---LQRIPLHGN-IDIHNQVTGVVVAIKGTPVG-NGKFKVSDVCY 164 (216)
Q Consensus 118 ~l~LEDe---sgRI~L~G~-i~~~~lVTGvVvaV~G~~~~-~G~F~V~di~~ 164 (216)
.-.|.|. ...|...=. +-++.|--|.-|-+.|+..+ +|.|.-.+++-
T Consensus 32 ~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~~g~F~A~evLa 83 (94)
T 2kct_A 32 RFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPGEDTFKARTLMT 83 (94)
T ss_dssp EEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTTCSEEEEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCCCCEEEEeEEEE
Confidence 5678887 777777633 56788888888888999988 89999999875
No 10
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=33.30 E-value=1.1e+02 Score=23.73 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=38.4
Q ss_pred CeEEEec-CCCcEEEEec-cCCCCceeeeEEEEEeccCCCCcEEEEEEEe
Q psy8637 117 DELILED-ELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 164 (216)
Q Consensus 117 D~l~LED-esgRI~L~G~-i~~~~lVTGvVvaV~G~~~~~G~F~V~di~~ 164 (216)
-.-.|.| ....|...=+ +-++.|--|.-|-+.|+..++|.|.-.+++-
T Consensus 55 v~F~vtD~~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLa 104 (136)
T 1j6q_A 55 VQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGVLGEDGKLAATEVLA 104 (136)
T ss_dssp EEEEEECTTCCCEEEEECSCCTTSCCSSSEEEEEEEECSTTSEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEe
Confidence 3567888 6777777633 5678888888888899998899999999886
No 11
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=25.90 E-value=33 Score=28.03 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=23.1
Q ss_pred eEEEecCCCc-EEEE--ec-cCCCCceeeeEEEEEeccC
Q psy8637 118 ELILEDELQR-IPLH--GN-IDIHNQVTGVVVAIKGTPV 152 (216)
Q Consensus 118 ~l~LEDesgR-I~L~--G~-i~~~~lVTGvVvaV~G~~~ 152 (216)
.+.|.|+||+ |+++ |+ -..-..-.|.||++.|.-.
T Consensus 169 ~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv~i~~~~v 207 (246)
T 1jmc_A 169 NIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARV 207 (246)
T ss_dssp EEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEchhhhhcccCCCCEEEEEEEEE
Confidence 5889999996 7775 54 1111134678888888644
No 12
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=25.88 E-value=67 Score=23.55 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEEec
Q psy8637 87 QQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGN 133 (216)
Q Consensus 87 mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~G~ 133 (216)
.+|=|+|.+.+.++. +...|.+++|=+||||+=.|-
T Consensus 48 l~lg~~i~e~L~kek-----------V~~GDVI~Id~~sG~V~klGR 83 (95)
T 2cqa_A 48 YDLGTKMIESLTKDK-----------VQAGDVITIDKATGKISKLGR 83 (95)
T ss_dssp EEECSHHHHHHHHTT-----------CCTTSEEEEETTTTEEEEEEC
T ss_pred EeCCHHHHHHHHHcC-----------ceeCCEEEEEccCCEEEEEEE
Confidence 456699999998874 234899999999999999885
No 13
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Probab=25.57 E-value=13 Score=28.52 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=14.3
Q ss_pred CCCceeeeEEEEEeccCCC
Q psy8637 136 IHNQVTGVVVAIKGTPVGN 154 (216)
Q Consensus 136 ~~~lVTGvVvaV~G~~~~~ 154 (216)
...++||+||||+=.+.++
T Consensus 72 ~~~lItGvICGvRVEeIed 90 (123)
T 3c9p_A 72 ERIAITGKICGVRIEEIDD 90 (123)
T ss_dssp GGGGCCSEETTEEGGGCCS
T ss_pred cHHHhcccccceehhhccc
Confidence 3569999999988765553
No 14
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=25.40 E-value=53 Score=30.00 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=32.7
Q ss_pred eEEEecCCCcEEEEec---cC------CCCceeeeEEEEEeccCCC----CcEE--EEEEEe
Q psy8637 118 ELILEDELQRIPLHGN---ID------IHNQVTGVVVAIKGTPVGN----GKFK--VSDVCY 164 (216)
Q Consensus 118 ~l~LEDesgRI~L~G~---i~------~~~lVTGvVvaV~G~~~~~----G~F~--V~di~~ 164 (216)
.+.|-|.||.|.++-+ ++ ...+-+|-||+|.|.+..+ |.++ |+++-.
T Consensus 36 Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~v 97 (438)
T 3nem_A 36 FLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVV 97 (438)
T ss_dssp EEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEE
T ss_pred EEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEEE
Confidence 4578999999988744 11 2357789999999987532 6665 456655
No 15
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=23.56 E-value=1.2e+02 Score=21.78 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhcCCCcceee
Q psy8637 45 MRECLLARVSQKWGKSVSVLK 65 (216)
Q Consensus 45 Lr~~l~~~a~~kw~~~~~i~k 65 (216)
+|+++-+.+..+|++.+.+..
T Consensus 41 ~RkLIYQ~~~~kfp~~i~vet 61 (87)
T 1ug8_A 41 QRKLIYQTLSWKYPKGIHVET 61 (87)
T ss_dssp HHHHHHHHHHHHSSSSEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEE
Confidence 678888999999998665544
No 16
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=23.49 E-value=84 Score=23.38 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=27.3
Q ss_pred CCeEEEecCCCcEEEEec---cCCCCceeeeEEEEEeccCCCC
Q psy8637 116 SDELILEDELQRIPLHGN---IDIHNQVTGVVVAIKGTPVGNG 155 (216)
Q Consensus 116 ~D~l~LEDesgRI~L~G~---i~~~~lVTGvVvaV~G~~~~~G 155 (216)
+|.+.+-|.||+|.+.-+ -....+-.+--|-+.|.+..++
T Consensus 52 ~d~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~ 94 (109)
T 1nnx_A 52 DDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDW 94 (109)
T ss_dssp TTEEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEEEET
T ss_pred CCeEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEECCCC
Confidence 688899999999999843 2223344455666778776544
No 17
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=23.39 E-value=69 Score=29.04 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=32.1
Q ss_pred eEEEecCCCcEEEEeccCCCCce-eeeEEEEEeccCC----CCcEEE--EEEEe-cC
Q psy8637 118 ELILEDELQRIPLHGNIDIHNQV-TGVVVAIKGTPVG----NGKFKV--SDVCY-AT 166 (216)
Q Consensus 118 ~l~LEDesgRI~L~G~i~~~~lV-TGvVvaV~G~~~~----~G~F~V--~di~~-~~ 166 (216)
-+.|-|.||.|.++-+- ..+- +|-||+|.|.+.. .|.++| +++-. +.
T Consensus 33 F~~lrD~~g~iQ~v~~~--~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~ 87 (422)
T 1n9w_A 33 FLLLRDRSGVVQVVTGG--LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSP 87 (422)
T ss_dssp EEEEEETTEEEEEEEES--CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEEC
T ss_pred EEEEEECCEEEEEEEEc--cccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEecc
Confidence 46788999999987642 4455 6888888888743 245655 56655 53
No 18
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=22.30 E-value=1.2e+02 Score=22.53 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=29.7
Q ss_pred eEEEecCCCcEEEEe----c----cCCCCceeeeEEEEEeccCC-CCcEEE
Q psy8637 118 ELILEDELQRIPLHG----N----IDIHNQVTGVVVAIKGTPVG-NGKFKV 159 (216)
Q Consensus 118 ~l~LEDesgRI~L~G----~----i~~~~lVTGvVvaV~G~~~~-~G~F~V 159 (216)
.+.|+|.||.|...= + .+...+..|.+|-|.|.... +|.-.+
T Consensus 56 ~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~qi 106 (136)
T 4gop_B 56 AYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSI 106 (136)
T ss_dssp EEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEEEE
Confidence 688999999887641 1 13567889999999998764 554433
No 19
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=21.89 E-value=1.3e+02 Score=28.53 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=34.0
Q ss_pred eEEEecCCCcEEEEeccC-------CCCceeeeEEEEEeccC-----------CCCcEEE--EEEEe-cC
Q psy8637 118 ELILEDELQRIPLHGNID-------IHNQVTGVVVAIKGTPV-----------GNGKFKV--SDVCY-AT 166 (216)
Q Consensus 118 ~l~LEDesgRI~L~G~i~-------~~~lVTGvVvaV~G~~~-----------~~G~F~V--~di~~-~~ 166 (216)
.+.|-|.||.|.++-+-+ ...+=+|-||+|.|++. ..|.++| +++.. +.
T Consensus 35 Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~ 104 (585)
T 1c0a_A 35 FIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINR 104 (585)
T ss_dssp EEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEEC
T ss_pred EEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEEeEEEEEec
Confidence 567889999999875311 13567899999999874 3576766 55655 53
No 20
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=21.65 E-value=86 Score=23.31 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=30.7
Q ss_pred CeEEEecCCC-cEEEEec-------cCCCCceeeeEEEEEeccCC-CCcEEEE
Q psy8637 117 DELILEDELQ-RIPLHGN-------IDIHNQVTGVVVAIKGTPVG-NGKFKVS 160 (216)
Q Consensus 117 D~l~LEDesg-RI~L~G~-------i~~~~lVTGvVvaV~G~~~~-~G~F~V~ 160 (216)
-.+.|+|.|| +|...== -+...+..|..|-|.|.... +|.-.+.
T Consensus 50 ~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g~~qi~ 102 (132)
T 3kdf_D 50 IVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLV 102 (132)
T ss_dssp EEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETTEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECCEEEEE
Confidence 3688999999 8888521 12567888999999998764 5554443
No 21
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=21.61 E-value=92 Score=28.25 Aligned_cols=48 Identities=15% Similarity=-0.040 Sum_probs=30.8
Q ss_pred eEEEecCCCcEEEEec--cCC----CCceeeeEEEEEeccC-------CCCcEE--EEEEEe-c
Q psy8637 118 ELILEDELQRIPLHGN--IDI----HNQVTGVVVAIKGTPV-------GNGKFK--VSDVCY-A 165 (216)
Q Consensus 118 ~l~LEDesgRI~L~G~--i~~----~~lVTGvVvaV~G~~~-------~~G~F~--V~di~~-~ 165 (216)
-+.|-|.||.|.++-+ +.. ..+-+|-||+|.|++. ..|.++ |+++.. +
T Consensus 32 Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~~~vl~ 95 (435)
T 2xgt_A 32 FFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIG 95 (435)
T ss_dssp EEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TTEEEEEEEEEEEE
T ss_pred EEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEEEEEee
Confidence 4678899999998743 211 1355788888888863 345555 456666 6
No 22
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=21.45 E-value=77 Score=29.84 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=33.4
Q ss_pred eEEEecCCCcEEEEec---cC------CCCceeeeEEEEEeccC--CCCcEE--EEEEEe
Q psy8637 118 ELILEDELQRIPLHGN---ID------IHNQVTGVVVAIKGTPV--GNGKFK--VSDVCY 164 (216)
Q Consensus 118 ~l~LEDesgRI~L~G~---i~------~~~lVTGvVvaV~G~~~--~~G~F~--V~di~~ 164 (216)
.+.|-|.||+|.++-+ +. ...+-+|-||+|.|.+. ..|.++ |+++..
T Consensus 106 Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~v 165 (529)
T 4ex5_A 106 FATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRL 165 (529)
T ss_dssp EEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence 4679999999998743 21 12467899999999874 457765 455655
No 23
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=21.38 E-value=90 Score=29.04 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=33.3
Q ss_pred eEEEecCCCcEEEEec---c-------CCCCceeeeEEEEEeccC--CCCcEEE--EEEEe
Q psy8637 118 ELILEDELQRIPLHGN---I-------DIHNQVTGVVVAIKGTPV--GNGKFKV--SDVCY 164 (216)
Q Consensus 118 ~l~LEDesgRI~L~G~---i-------~~~~lVTGvVvaV~G~~~--~~G~F~V--~di~~ 164 (216)
.+.|-|.||+|.++-+ + ....+-+|-||+|.|++. ..|.++| +++-.
T Consensus 84 F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~v 144 (504)
T 1e1o_A 84 FVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRL 144 (504)
T ss_dssp EEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEE
Confidence 5678899999998743 2 123466899999999874 5577665 45555
No 24
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=20.93 E-value=1.1e+02 Score=29.31 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=34.0
Q ss_pred eEEEecCCCcEEEEeccCC---------CCceeeeEEEEEeccC-----------CCCcEEE--EEEEe-cCC
Q psy8637 118 ELILEDELQRIPLHGNIDI---------HNQVTGVVVAIKGTPV-----------GNGKFKV--SDVCY-ATP 167 (216)
Q Consensus 118 ~l~LEDesgRI~L~G~i~~---------~~lVTGvVvaV~G~~~-----------~~G~F~V--~di~~-~~~ 167 (216)
.+.|-|.+|.|.++-+-+. ..+-+|-||+|.|++. ..|.++| +++-. +..
T Consensus 41 Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a 113 (617)
T 4ah6_A 41 FLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNAC 113 (617)
T ss_dssp EEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECB
T ss_pred EEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecC
Confidence 6789999999998754211 2356788899988864 2477775 55555 433
No 25
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=20.76 E-value=1e+02 Score=23.63 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhc-CC------CcceeeeeecccCCCCeEEEEEEEEeeCC
Q psy8637 42 LNKMRECLLARVSQKW-GK------SVSVLKLSDLNETDTEECVIIGTLFKHQQ 88 (216)
Q Consensus 42 L~~Lr~~l~~~a~~kw-~~------~~~i~kll~l~~~~g~~cvvIGTlyK~mk 88 (216)
+-.||.|+...|.+.| .. ..-+.+|.++ ++|+.++++=++=.++.
T Consensus 16 ipe~r~ri~~~~~~~~~~~~~~~~~~~lvg~i~e~--~~g~~a~~~~~vt~~~~ 67 (157)
T 2f3x_A 16 IPELRERIKNVAEKTLEDEVKSLSLDEVIGEIIDL--ELDDQAISILEIKQEHV 67 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCGGGSSSEEEEE--ETTTEEEEEEECCGGGB
T ss_pred CHHHHHHHHHHHHhhhHHHHhcCCHHHheeeEEEE--cCCCEEEEEEEcCHHHh
Confidence 3579999999999888 32 1235688888 57888777655555554
No 26
>2oj5_A Viral attachment protein sigma 1; beta-barrel, beta-spiral repeat, aspartic acid cluster, GREE motif, trimer, viral protein; 1.75A {Reovirus SP} PDB: 3eoy_A 2oj6_A
Probab=20.68 E-value=27 Score=27.83 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=25.6
Q ss_pred EecCCCcEEEEeccCCCCceeeeEEEEEeccCC---------CCcEEEEEEEe-cCC
Q psy8637 121 LEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVG---------NGKFKVSDVCY-ATP 167 (216)
Q Consensus 121 LEDesgRI~L~G~i~~~~lVTGvVvaV~G~~~~---------~G~F~V~di~~-~~~ 167 (216)
|||-|++|.+.-+ -.+-||.=.|.+-...+ ...|.|.|++. .++
T Consensus 10 l~d~sn~v~~s~~---yr~R~g~W~G~l~Y~~p~L~Wrv~Vt~~lm~VdDwl~lsf~ 63 (165)
T 2oj5_A 10 IADVSGGIGMSPN---YRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLP 63 (165)
T ss_dssp EEEETTEEEECHH---HHCEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEC
T ss_pred hhcccCceeeccc---cceeeeeEEEEEEecCCCceEEEeeeeeEEEEccEEEEEec
Confidence 7899999988643 12334555554443332 24677777665 444
Done!