Your job contains 1 sequence.
>psy8637
MKNIECKSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKS
VSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELI
LEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNEN
KYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQKY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8637
(216 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030616-157 - symbol:pold2 "polymerase (DNA ... 430 2.0e-40 1
MGI|MGI:1097163 - symbol:Pold2 "polymerase (DNA directed)... 394 1.3e-36 1
RGD|1304954 - symbol:Pold2 "polymerase (DNA directed), de... 394 1.3e-36 1
UNIPROTKB|P49004 - symbol:POLD2 "DNA polymerase delta sub... 390 3.5e-36 1
UNIPROTKB|H9GW60 - symbol:POLD2 "Uncharacterized protein"... 387 7.2e-36 1
UNIPROTKB|F1SSF8 - symbol:POLD2 "Uncharacterized protein"... 387 7.2e-36 1
UNIPROTKB|C9JLE1 - symbol:POLD2 "DNA polymerase delta sub... 385 1.2e-35 1
UNIPROTKB|F8W8R3 - symbol:POLD2 "DNA polymerase delta sub... 385 1.2e-35 1
UNIPROTKB|P49005 - symbol:POLD2 "DNA polymerase delta sub... 385 1.2e-35 1
FB|FBgn0027903 - symbol:CG12018 species:7227 "Drosophila ... 329 1.0e-29 1
UNIPROTKB|C9J8Z7 - symbol:POLD2 "DNA polymerase delta sub... 328 1.3e-29 1
UNIPROTKB|C9IZD2 - symbol:POLD2 "DNA polymerase delta sub... 313 5.0e-28 1
TAIR|locus:2060010 - symbol:POLD2 "DNA polymerase delta s... 250 1.5e-22 2
GENEDB_PFALCIPARUM|PFC0340w - symbol:PFC0340w "DNA polyme... 181 2.8e-19 2
DICTYBASE|DDB_G0281641 - symbol:polD2 "DNA polymerase del... 212 1.8e-16 1
SGD|S000003766 - symbol:POL31 "Subunit of DNA polymerase ... 207 5.3e-16 1
POMBASE|SPAC27E2.05 - symbol:cdc1 "DNA polymerase delta s... 190 3.3e-14 1
ASPGD|ASPL0000009421 - symbol:AN10470 species:162425 "Eme... 165 2.3e-11 1
WB|WBGene00008722 - symbol:F12F6.7 species:6239 "Caenorha... 158 9.4e-11 1
CGD|CAL0003049 - symbol:HYS2 species:5476 "Candida albica... 156 6.8e-10 1
UNIPROTKB|C9JHC7 - symbol:POLD2 "DNA polymerase delta sub... 129 2.7e-09 2
FB|FBgn0022069 - symbol:Nnp-1 "Nnp-1" species:7227 "Droso... 119 0.00015 1
>ZFIN|ZDB-GENE-030616-157 [details] [associations]
symbol:pold2 "polymerase (DNA directed), delta 2,
regulatory subunit" species:7955 "Danio rerio" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 ZFIN:ZDB-GENE-030616-157
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 CTD:5425
HOVERGEN:HBG051396 KO:K02328 InterPro:IPR024826 PANTHER:PTHR10416
EMBL:AL591213 EMBL:BC066617 EMBL:BC171676 EMBL:BC171678
IPI:IPI00507461 RefSeq:NP_998468.1 UniGene:Dr.80429 STRING:Q90X40
GeneID:796456 KEGG:dre:796456 InParanoid:Q90X40 NextBio:20932616
Uniprot:Q90X40
Length = 467
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 88/171 (51%), Positives = 112/171 (65%)
Query: 9 YTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSD 68
+ R Y S+ FR+ + +S+Q+AHIYA RL +MR+ L R + KWG V + KL D
Sbjct: 23 FERAEPAYSGCSERFRIGERSFSRQYAHIYATRLMQMRQILTERATHKWGTEVPIRKLCD 82
Query: 69 LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRI 128
L EECVI+GT+FKH +L+P+IL+EISEE L+PQP ++S SDELILEDELQRI
Sbjct: 83 LQMG--EECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSDELILEDELQRI 140
Query: 129 PLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA-TPVFKPRTTLSNN 178
L GNID VTG V+AIKG +GKF V D C A P PR LS++
Sbjct: 141 KLEGNIDAPKFVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLSSD 191
>MGI|MGI:1097163 [details] [associations]
symbol:Pold2 "polymerase (DNA directed), delta 2, regulatory
subunit" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISO] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 MGI:MGI:1097163
GO:GO:0005634 GO:GO:0003677 EMBL:CH466574 GO:GO:0006261
EMBL:AL627069 GO:GO:0003887 CTD:5425 eggNOG:COG1311
GeneTree:ENSGT00390000006780 HOGENOM:HOG000189057
HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG OrthoDB:EOG41NTKZ
InterPro:IPR024826 PANTHER:PTHR10416 ChiTaRS:POLD2 EMBL:Z72486
EMBL:BC003342 IPI:IPI00132795 RefSeq:NP_032920.2 UniGene:Mm.35788
ProteinModelPortal:O35654 SMR:O35654 IntAct:O35654 STRING:O35654
PhosphoSite:O35654 PaxDb:O35654 PRIDE:O35654 DNASU:18972
Ensembl:ENSMUST00000102922 GeneID:18972 KEGG:mmu:18972
InParanoid:Q99J61 NextBio:295324 Bgee:O35654 Genevestigator:O35654
GermOnline:ENSMUSG00000020471 Uniprot:O35654
Length = 469
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 77/154 (50%), Positives = 104/154 (67%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +++Q+AHIYA RL +MR L++R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+EISEE LVPQP + ++ DEL+LEDELQRI L
Sbjct: 88 G--EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +G+F+V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFA 179
>RGD|1304954 [details] [associations]
symbol:Pold2 "polymerase (DNA directed), delta 2, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0043625 "delta DNA polymerase complex" evidence=IC] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007185 Pfam:PF04042
RGD:1304954 GO:GO:0003677 GO:GO:0006261 GO:GO:0003887 GO:GO:0043625
CTD:5425 eggNOG:COG1311 GeneTree:ENSGT00390000006780
HOGENOM:HOG000189057 HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ InterPro:IPR024826 PANTHER:PTHR10416
EMBL:BC079267 IPI:IPI00198398 RefSeq:NP_001013068.1
UniGene:Rn.22989 STRING:Q6AXY4 PRIDE:Q6AXY4
Ensembl:ENSRNOT00000019288 GeneID:289758 KEGG:rno:289758
UCSC:RGD:1304954 InParanoid:Q6AXY4 NextBio:630310
Genevestigator:Q6AXY4 GermOnline:ENSRNOG00000014098 Uniprot:Q6AXY4
Length = 469
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 77/154 (50%), Positives = 104/154 (67%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +++Q+AHIYA RL +MR L++R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+EISEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 G--EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF+V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFA 179
>UNIPROTKB|P49004 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9913
"Bos taurus" [GO:0006260 "DNA replication" evidence=TAS]
[GO:0005634 "nucleus" evidence=IC] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 EMBL:U21091 EMBL:BC113315
IPI:IPI00694189 PIR:I46076 RefSeq:NP_776853.2 UniGene:Bt.5282
IntAct:P49004 STRING:P49004 PRIDE:P49004 Ensembl:ENSBTAT00000016237
GeneID:281991 KEGG:bta:281991 CTD:5425 eggNOG:COG1311
GeneTree:ENSGT00390000006780 HOGENOM:HOG000189057
HOVERGEN:HBG051396 InParanoid:P49004 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ BindingDB:P49004 ChEMBL:CHEMBL2762
NextBio:20805859 InterPro:IPR024826 PANTHER:PTHR10416
Uniprot:P49004
Length = 469
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 77/154 (50%), Positives = 103/154 (66%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P Y N SQ FRL + +S+Q+AHIYA RL +MR L++R Q+WG V V KL +L
Sbjct: 28 PVVTYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DELILEDELQRI L
Sbjct: 88 G--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLE 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFA 179
>UNIPROTKB|H9GW60 [details] [associations]
symbol:POLD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00390000006780 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 Ensembl:ENSCAFT00000004694 Uniprot:H9GW60
Length = 511
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 79/169 (46%), Positives = 109/169 (64%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P + Y N SQ FRL + +S+Q+AHIYA RL +MR L++R Q WG + + KL +L
Sbjct: 70 PVSTYTNSSQSFRLGERSFSRQYAHIYATRLLQMRPFLVSRAQQHWGDGIQIKKLCELQP 129
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+EISEE L+PQP + ++ D+L+LEDELQRI L
Sbjct: 130 G--EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDQLVLEDELQRIKLE 187
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA--TPVFKPRTTLSNN 178
G+ID VTG V+A+ G+ +GKF V D C+A P KP TL +
Sbjct: 188 GSIDASKLVTGTVLAVLGSVRDSGKFLVEDHCFAELAPQ-KPAPTLDTD 235
>UNIPROTKB|F1SSF8 [details] [associations]
symbol:POLD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 GeneTree:ENSGT00390000006780
OMA:HWGSGVG InterPro:IPR024826 PANTHER:PTHR10416 EMBL:CU928907
Ensembl:ENSSSCT00000018235 Uniprot:F1SSF8
Length = 469
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 77/154 (50%), Positives = 104/154 (67%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P Y N SQ FRL + +++Q+AHIYA RL +MR L++R Q+WG V V KL +L
Sbjct: 28 PVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQMRPFLVSRARQRWGGGVVVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK QL+P+IL+E+SEE L+PQP + ++ DELILEDELQRI L
Sbjct: 88 G--EKCCVVGTLFKAMQLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLE 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 146 GAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFA 179
>UNIPROTKB|C9JLE1 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] GO:GO:0005634 GO:GO:0006261
HOGENOM:HOG000189057 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00927870
ProteinModelPortal:C9JLE1 SMR:C9JLE1 STRING:C9JLE1
Ensembl:ENST00000433715 ArrayExpress:C9JLE1 Bgee:C9JLE1
Uniprot:C9JLE1
Length = 220
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 77/154 (50%), Positives = 101/154 (65%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +S+Q+AHIYA RL +MR L R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
>UNIPROTKB|F8W8R3 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 InterPro:IPR024826 PANTHER:PTHR10416 HGNC:HGNC:9176
ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00925787
ProteinModelPortal:F8W8R3 SMR:F8W8R3 Ensembl:ENST00000223361
ArrayExpress:F8W8R3 Bgee:F8W8R3 Uniprot:F8W8R3
Length = 455
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 77/154 (50%), Positives = 101/154 (65%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +S+Q+AHIYA RL +MR L R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
>UNIPROTKB|P49005 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_216
InterPro:IPR007185 Pfam:PF04042 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0006284 GO:GO:0003677 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271 GO:GO:0003887
GO:GO:0032201 GO:GO:0006297 CTD:5425 eggNOG:COG1311
HOGENOM:HOG000189057 HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ InterPro:IPR024826 PANTHER:PTHR10416 EMBL:U21090
EMBL:AF239710 EMBL:AY116646 EMBL:BC000459 IPI:IPI00025616
PIR:I38950 RefSeq:NP_001120690.1 RefSeq:NP_001243808.1
RefSeq:NP_006221.2 UniGene:Hs.306791 UniGene:Hs.740138 PDB:3E0J
PDBsum:3E0J ProteinModelPortal:P49005 SMR:P49005 IntAct:P49005
STRING:P49005 PhosphoSite:P49005 DMDM:1352307 PaxDb:P49005
PeptideAtlas:P49005 PRIDE:P49005 DNASU:5425 Ensembl:ENST00000406581
Ensembl:ENST00000452185 GeneID:5425 KEGG:hsa:5425 UCSC:uc003tkf.4
GeneCards:GC07M044120 HGNC:HGNC:9176 HPA:HPA026745 MIM:600815
neXtProt:NX_P49005 PharmGKB:PA33497 InParanoid:P49005
PhylomeDB:P49005 ChEMBL:CHEMBL2763 ChiTaRS:POLD2
EvolutionaryTrace:P49005 GenomeRNAi:5425 NextBio:20989
ArrayExpress:P49005 Bgee:P49005 CleanEx:HS_POLD2
Genevestigator:P49005 GermOnline:ENSG00000106628 Uniprot:P49005
Length = 469
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 77/154 (50%), Positives = 101/154 (65%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +S+Q+AHIYA RL +MR L R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
G ID+ VTG V+A+ G+ +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179
>FB|FBgn0027903 [details] [associations]
symbol:CG12018 species:7227 "Drosophila melanogaster"
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;NAS]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006260 "DNA replication" evidence=IEA;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005634 GO:GO:0005875 EMBL:AE014296 GO:GO:0007052
GO:GO:0003677 GO:GO:0006260 GO:GO:0006974 GO:GO:0003887
eggNOG:COG1311 GeneTree:ENSGT00390000006780 KO:K02328
InterPro:IPR024826 PANTHER:PTHR10416 OMA:CATGCCV EMBL:AF160903
EMBL:AY113311 RefSeq:NP_647659.1 UniGene:Dm.819
ProteinModelPortal:Q9W088 SMR:Q9W088 DIP:DIP-20333N
MINT:MINT-1686297 STRING:Q9W088 PaxDb:Q9W088 PRIDE:Q9W088
EnsemblMetazoa:FBtr0072775 GeneID:38228 KEGG:dme:Dmel_CG12018
UCSC:CG12018-RA FlyBase:FBgn0027903 InParanoid:Q9W088
OrthoDB:EOG4NCJV7 PhylomeDB:Q9W088 ChiTaRS:CG12018 GenomeRNAi:38228
NextBio:807634 Bgee:Q9W088 GermOnline:CG12018 Uniprot:Q9W088
Length = 431
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 74/196 (37%), Positives = 106/196 (54%)
Query: 16 YKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTE 75
Y+NLS FRL DY KQF H+YA RL +M L +KWG + KL +L
Sbjct: 9 YENLSSIFRLKGHDYQKQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDV 68
Query: 76 ECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNID 135
C++IGT+FKHQ KP+IL++ISEE +L PQP ++ D+++LEDELQR+ L G ++
Sbjct: 69 HCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVRLQGKLN 128
Query: 136 IHNQVTGVVVAIKGTPVGNGKFKVSDVC-YATPVFKPRTTLSNNENKYV-NHVDAFTDDD 193
TGVV A G +G F V D+ Y + KP + + + + +D
Sbjct: 129 GQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLDQLQAHK 188
Query: 194 FIRLWEGL-FFSMWMS 208
F+ E L F W++
Sbjct: 189 FV---EALNLFQYWLA 201
>UNIPROTKB|C9J8Z7 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] GO:GO:0006261 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 HOGENOM:HOG000213747
IPI:IPI00927382 ProteinModelPortal:C9J8Z7 SMR:C9J8Z7 STRING:C9J8Z7
Ensembl:ENST00000456038 ArrayExpress:C9J8Z7 Bgee:C9J8Z7
Uniprot:C9J8Z7
Length = 155
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 66/130 (50%), Positives = 85/130 (65%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +S+Q+AHIYA RL +MR L R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNIDIHNQVT 141
G ID+ VT
Sbjct: 146 GTIDVSKLVT 155
>UNIPROTKB|C9IZD2 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] GO:GO:0006261 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00927214
ProteinModelPortal:C9IZD2 SMR:C9IZD2 STRING:C9IZD2
Ensembl:ENST00000418438 HOGENOM:HOG000213747 ArrayExpress:C9IZD2
Bgee:C9IZD2 Uniprot:C9IZD2
Length = 148
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 63/123 (51%), Positives = 81/123 (65%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P A Y N SQ FRL + +S+Q+AHIYA RL +MR L R Q WG V V KL +L
Sbjct: 28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
E+C ++GTLFK L+P+IL+E+SEE L+PQP + ++ DEL+LEDELQRI L
Sbjct: 88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145
Query: 132 GNI 134
G I
Sbjct: 146 GTI 148
>TAIR|locus:2060010 [details] [associations]
symbol:POLD2 "DNA polymerase delta small subunit"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA;RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0007020 "microtubule nucleation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0016570 "histone
modification" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
InterPro:IPR007185 Pfam:PF04042 EMBL:CP002685 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 KO:K02328 OMA:HWGSGVG
InterPro:IPR024826 PANTHER:PTHR10416 IPI:IPI00975273
RefSeq:NP_181742.2 UniGene:At.42746 ProteinModelPortal:F4IM00
SMR:F4IM00 PRIDE:F4IM00 EnsemblPlants:AT2G42120.1 GeneID:818812
KEGG:ath:AT2G42120 Uniprot:F4IM00
Length = 441
Score = 250 (93.1 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 66/180 (36%), Positives = 99/180 (55%)
Query: 7 KSYTRPTADYKNLS-QCFRLASKDY-SKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVL 64
K + R +DY +L + F + + Y +Q++ IY RL+ MR LL ++ W + V
Sbjct: 7 KIHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRT-LLYSLAPTWKSHLPVC 65
Query: 65 KLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDE 124
K+ L + +EC+I+GTLFKH +LKP +L E S+E + P + +F+ D LILEDE
Sbjct: 66 KVLGLEKG--KECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDE 123
Query: 125 LQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYV 183
R+ L G+ + VTGVVVA+ G G+F V DV A + + E+KYV
Sbjct: 124 SGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYV 183
Score = 35 (17.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 171 PRTTLSNNENKYVNHVDAFTDDDFIRL 197
P N++KY N + ++ +RL
Sbjct: 381 PHVYFVGNQDKYDNRLIKGSEGQLVRL 407
>GENEDB_PFALCIPARUM|PFC0340w [details] [associations]
symbol:PFC0340w "DNA polymerase delta small
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0003677 GO:GO:0006260
EMBL:AL844502 GO:GO:0003887 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 OMA:CATGCCV PIR:T18428 RefSeq:XP_001351155.1
ProteinModelPortal:O77321 PRIDE:O77321
EnsemblProtists:PFC0340w:mRNA GeneID:814397 KEGG:pfa:PFC0340w
EuPathDB:PlasmoDB:PF3D7_0308000 HOGENOM:HOG000284166
ProtClustDB:CLSZ2500465 Uniprot:O77321
Length = 498
Score = 181 (68.8 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 75 EECVIIGTLFKHQQLKPNILKEISEELKLVPQP-QHTHFVSDSDELILEDELQRIPLHGN 133
E+C IGT+FK +L+P+IL E E+ ++ +TH D D L LEDE R+ L GN
Sbjct: 150 EKCYCIGTIFKKMELRPSILNEYLSEISILNNTINYTH---DEDILFLEDETARLKLEGN 206
Query: 134 IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSN---NENKYV 183
I+ +TG+ V +KG + NG V ++ Y+ + P+ + N N++K++
Sbjct: 207 INSDFYITGLTVIVKGIGMSNGSLYVEEIIYS---YIPKLDIPNCISNDDKFI 256
Score = 80 (33.2 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 15 DYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARV 53
+Y NLS+ F + Y++QF+HIY++R+ M+ L+ +
Sbjct: 38 EYVNLSERFIITCPTYTQQFSHIYSLRIKIMKTLLMRTI 76
>DICTYBASE|DDB_G0281641 [details] [associations]
symbol:polD2 "DNA polymerase delta subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 dictyBase:DDB_G0281641
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000042 GO:GO:0003887 eggNOG:COG1311 KO:K02328
InterPro:IPR024826 PANTHER:PTHR10416 OMA:CATGCCV RefSeq:XP_640553.1
STRING:Q54TN8 EnsemblProtists:DDB0234234 GeneID:8623163
KEGG:ddi:DDB_G0281641 InParanoid:Q54TN8 Uniprot:Q54TN8
Length = 521
Score = 212 (79.7 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 54/171 (31%), Positives = 93/171 (54%)
Query: 33 QFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPN 92
Q++ IYA RL K+ L+ V K+ + K+ + D EC++IGTL+K +LKPN
Sbjct: 102 QYSSIYASRLEKLNPILVENVESKY-PGIPTQKILHMKPGD--ECIMIGTLYKEMELKPN 158
Query: 93 ILKEISEELKLVPQPQHTH-FVSDSDELILEDELQRIPLHGNID-IHNQVTGVVVAIKGT 150
ILK +++ ++P P + F+ + D+L ED R+ L G+ + + + VTG+ VAI G
Sbjct: 159 ILKAYAQDRAMLPIPDNRESFIGEKDKLFFEDNTGRVKLIGSKEMVDSLVTGLNVAILGK 218
Query: 151 PVGNGKFKVSDVCYATPVFKPRTTLSNNENKYVNHVDAFTDDDFIRLWEGL 201
+ + +F+V D+ + P P+ + +++ DD +I L GL
Sbjct: 219 GLPDAEFEVRDIVF--PGIPPQP--------HSRDLESLKDDAYICLISGL 259
>SGD|S000003766 [details] [associations]
symbol:POL31 "Subunit of DNA polymerase delta (polymerase
III)" species:4932 "Saccharomyces cerevisiae" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0006284 "base-excision repair"
evidence=TAS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006301 "postreplication repair" evidence=TAS]
[GO:0043625 "delta DNA polymerase complex" evidence=TAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=TAS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 SGD:S000003766 EMBL:BK006943 GO:GO:0006284
GO:GO:0003677 GO:GO:0006298 GO:GO:0006278 EMBL:X87611 GO:GO:0006289
GO:GO:0006301 GO:GO:0043137 GO:GO:0003887 GO:GO:0006272
GO:GO:0043625 eggNOG:COG1311 GeneTree:ENSGT00390000006780
HOGENOM:HOG000189057 KO:K02328 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 OrthoDB:EOG4R273H EMBL:D50324 EMBL:Z49506
PIR:S55194 RefSeq:NP_012539.1 ProteinModelPortal:P46957 SMR:P46957
DIP:DIP-2525N IntAct:P46957 MINT:MINT-477144 STRING:P46957
PaxDb:P46957 EnsemblFungi:YJR006W GeneID:853462 KEGG:sce:YJR006W
CYGD:YJR006w NextBio:974044 Genevestigator:P46957
GermOnline:YJR006W Uniprot:P46957
Length = 487
Score = 207 (77.9 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 57/163 (34%), Positives = 85/163 (52%)
Query: 18 NLSQCFRLASK--DYSKQFAHIYAVRLNKMRECLLARVSQKW--GKSVS---VLKLSD-L 69
N S F+L K DY Q+ HIY RL RE +L ++W G +++ VLK L
Sbjct: 35 NKSNPFQLCYKKRDYGSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVL 94
Query: 70 NETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQ--PQHTHFVSDSDELILEDELQR 127
+ + C +G+++ + KPN+L E+ + P +T SDE++LEDE R
Sbjct: 95 DIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGR 154
Query: 128 IPLHGNIDIHNQ--VTGVVVAIKGTPVGNGKFKVSDVCYATPV 168
+ L G+ I + +TGVVV I G G F+V D+CY TP+
Sbjct: 155 VLLVGDF-IRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPL 196
>POMBASE|SPAC27E2.05 [details] [associations]
symbol:cdc1 "DNA polymerase delta small subunit Cdc1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] InterPro:IPR007185 Pfam:PF04042
PomBase:SPAC27E2.05 GO:GO:0005829 EMBL:CU329670 GO:GO:0051301
GO:GO:0007067 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0000723
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0043625
eggNOG:COG1311 HOGENOM:HOG000189057 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 OMA:CATGCCV EMBL:Y12562 EMBL:Y12561 PIR:T38453
RefSeq:NP_594406.1 IntAct:P87324 STRING:P87324
EnsemblFungi:SPAC27E2.05.1 GeneID:2542083 KEGG:spo:SPAC27E2.05
OrthoDB:EOG4R273H NextBio:20803156 Uniprot:P87324
Length = 462
Score = 190 (71.9 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 51/178 (28%), Positives = 94/178 (52%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
P + K L L+ + YS+Q+A IY RL +R + S+KW + ++ D+ +
Sbjct: 9 PCEETKRLE--LSLSQQTYSQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDV-K 65
Query: 72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD------ELILEDEL 125
+D E+C ++ T + LKPN++ ++++ +V + + +VS D E LED+
Sbjct: 66 SD-EDCWVVATAYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDY 124
Query: 126 QRIPLHGNIDIHNQ--VTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENK 181
RI G+ +++ VTGVV+A+ G G+F V DVC+ +F ++ +E++
Sbjct: 125 GRIDCSGSF-LYDAGVVTGVVLAVLGHEDEQGRFVVVDVCFPG-IFSHSIPMTTDESQ 180
>ASPGD|ASPL0000009421 [details] [associations]
symbol:AN10470 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IEA] [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 GO:GO:0003887
HOGENOM:HOG000189057 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 EnsemblFungi:CADANIAT00004848 Uniprot:C8V6H5
Length = 538
Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 51/177 (28%), Positives = 91/177 (51%)
Query: 11 RPTADYKNLSQCFRLA---SKDYSKQFAHIYAVRLNKMRECLLARVSQKW-GKSVS---- 62
R ++ Y L+ FRL + Y +Q+ +Y +RL K++ + A + W G S++
Sbjct: 24 RNSSIYNPLNT-FRLPPGQERQYQQQYGDMYFLRLAKLKPAVEAVAVEAWEGFSIAGEHA 82
Query: 63 --VLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEE-LKLVPQPQHTH---FVSDS 116
V ++ D+ + E C + GT++ LKPNIL +++++ P P+ T+ +
Sbjct: 83 RRVERVLDVRQG--ELCWVAGTIYMEMPLKPNILDDLAKDNFTSAPPPRRTYQDPAHPEL 140
Query: 117 DELILEDELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPR 172
E++LEDE R+ L G+ + TGV++A+ GT NG F+ D+ +PR
Sbjct: 141 TEIMLEDESGRLRLTGSKLQSVQLATGVIIAVLGTENANGDFEAIDIKVPDLARQPR 197
>WB|WBGene00008722 [details] [associations]
symbol:F12F6.7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0040035 GO:GO:0003887 eggNOG:COG1311
GeneTree:ENSGT00390000006780 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 EMBL:Z73425 PIR:T20798 RefSeq:NP_502177.1
ProteinModelPortal:Q19366 IntAct:Q19366 STRING:Q19366 PaxDb:Q19366
EnsemblMetazoa:F12F6.7.1 EnsemblMetazoa:F12F6.7.2 GeneID:178077
KEGG:cel:CELE_F12F6.7 UCSC:F12F6.7.1 CTD:178077 WormBase:F12F6.7
HOGENOM:HOG000017939 InParanoid:Q19366 OMA:CATGCCV NextBio:899618
Uniprot:Q19366
Length = 451
Score = 158 (60.7 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 55/211 (26%), Positives = 97/211 (45%)
Query: 15 DYKNLSQCFRLASKD----YSKQFAHIYAVRLNKMRECLLARVSQKWGKS-VSVLKLSDL 69
+YKN+S + L KD +++Q+ +Y RL +++ +L ++ GK + +LSD
Sbjct: 10 NYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGKFTHSQLSDA 69
Query: 70 NETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDS---------DELI 120
+ EE ++G + K +P+ILK + E K+ D D +
Sbjct: 70 KQD--EEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSIEDRIE 127
Query: 121 LEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNEN 180
LE + Q + L GNI + TG V + G G F V+ + + + V P+ +
Sbjct: 128 LESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFHVNRLVWPS-VKVPKKVAVDGTI 186
Query: 181 KYVNHVDAFTD--DDFIRLWEGL-FFSMWMS 208
+V+ +D D DD + + GL F + WM+
Sbjct: 187 AFVSGLDLTGDLEDDRLTI-SGLEFMADWMN 216
>CGD|CAL0003049 [details] [associations]
symbol:HYS2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 CGD:CAL0003049 GO:GO:0003677
GO:GO:0006260 EMBL:AACQ01000012 GO:GO:0003887 eggNOG:COG1311
KO:K02328 InterPro:IPR024826 PANTHER:PTHR10416 EMBL:AACQ01000011
RefSeq:XP_721869.1 RefSeq:XP_722029.1 STRING:Q5AK60 GeneID:3636359
GeneID:3636441 KEGG:cal:CaO19.11442 KEGG:cal:CaO19.3960
Uniprot:Q5AK60
Length = 474
Score = 156 (60.0 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 47/167 (28%), Positives = 81/167 (48%)
Query: 26 ASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDT-------EECV 78
+S+ Y+KQ+ +Y RL +R+ + +KWG + + + + D + C
Sbjct: 35 SSRKYAKQYFSMYQYRLKNLRDRVHKTAMEKWGHGTKKINGNTIEKQDKILDIASGKLCW 94
Query: 79 IIGTLFKHQQLKPNILKEISEELK-LVPQPQHTHFVSDSDELI-LEDELQRIPLHG-NID 135
+IGT+F + K +IL ++ + ++P T+ D ++ LEDE R L+ N
Sbjct: 95 VIGTVFCDAKYKLDILNDVEKGTDDVLPLEPVTYVNEDEQPIVMLEDESGRAILNNDNFL 154
Query: 136 IHNQ-VTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENK 181
N VTG +VA+ G + G F++ D+ Y P P+ L ENK
Sbjct: 155 AKNLLVTGCIVAVLGIEIQAGIFEIMDIAY--PDCAPQKPLPLGENK 199
>UNIPROTKB|C9JHC7 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 HOGENOM:HOG000189057
InterPro:IPR024826 PANTHER:PTHR10416 HGNC:HGNC:9176 ChiTaRS:POLD2
EMBL:AC006454 IPI:IPI00926735 ProteinModelPortal:C9JHC7 SMR:C9JHC7
STRING:C9JHC7 Ensembl:ENST00000436844 ArrayExpress:C9JHC7
Bgee:C9JHC7 Uniprot:C9JHC7
Length = 257
Score = 129 (50.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSV 63
P A Y N SQ FRL + +S+Q+AHIYA RL +MR L R Q WG ++V
Sbjct: 28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGTVLAV 79
Score = 57 (25.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 142 GVVVAIKGTPVGNGKFKVSDVCYA 165
G V+A+ G+ +GKF V D C+A
Sbjct: 74 GTVLAVFGSVRDDGKFLVEDYCFA 97
>FB|FBgn0022069 [details] [associations]
symbol:Nnp-1 "Nnp-1" species:7227 "Drosophila melanogaster"
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0016072 "rRNA metabolic process"
evidence=NAS] [GO:0030688 "preribosome, small subunit precursor"
evidence=IEA] [GO:0000022 "mitotic spindle elongation"
evidence=IMP] InterPro:IPR010301 Pfam:PF05997 GO:GO:0005634
EMBL:AE014134 GO:GO:0000022 GO:GO:0006364 GO:GO:0030688
eggNOG:NOG299406 KO:K14849 PANTHER:PTHR13026
GeneTree:ENSGT00390000011821 EMBL:BT015271 RefSeq:NP_651976.1
UniGene:Dm.7283 DIP:DIP-20610N IntAct:Q9VJZ7 MINT:MINT-887857
STRING:Q9VJZ7 PaxDb:Q9VJZ7 PRIDE:Q9VJZ7 EnsemblMetazoa:FBtr0080473
GeneID:44391 KEGG:dme:Dmel_CG12396 UCSC:CG12396-RA CTD:44391
FlyBase:FBgn0022069 InParanoid:Q9VJZ7 OMA:RALACND OrthoDB:EOG4BNZSW
PhylomeDB:Q9VJZ7 ChiTaRS:RRP1 GenomeRNAi:44391 NextBio:837226
Bgee:Q9VJZ7 GermOnline:CG12396 Uniprot:Q9VJZ7
Length = 687
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 17/27 (62%), Positives = 26/27 (96%)
Query: 189 FTDDDFIRLWEGLFFSMWMSDKPLIQK 215
F +DDF+R+W+GL+++MWMSDKPL+Q+
Sbjct: 76 FNEDDFMRIWKGLYYTMWMSDKPLVQE 102
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 216 216 0.00088 112 3 11 22 0.37 33
32 0.50 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 606 (64 KB)
Total size of DFA: 195 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.29u 0.07s 21.36t Elapsed: 00:00:22
Total cpu time: 21.30u 0.07s 21.37t Elapsed: 00:00:22
Start: Thu Aug 15 15:08:41 2013 End: Thu Aug 15 15:09:03 2013