RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8637
         (216 letters)



>gnl|CDD|218849 pfam05997, Nop52, Nucleolar protein,Nop52.  Nop52 believed to be
           involved in the generation of 28S rRNA.
          Length = 210

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 15/26 (57%), Positives = 22/26 (84%)

Query: 190 TDDDFIRLWEGLFFSMWMSDKPLIQK 215
            + D ++LW+GLF+ MWMSDKPL+Q+
Sbjct: 36  DELDLLKLWKGLFYCMWMSDKPLVQQ 61


>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA
           polymerase delta, subunit B [DNA replication,
           recombination, and repair].
          Length = 481

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 13/155 (8%)

Query: 25  LASKDYSKQFAHIYAVRLNKM-RECLLARVSQKWGKSVSVLKLSDLN-ETDTEECV---- 78
           L+  DY  Q+A IY  RL K  R  ++    ++W     + +  D+    D         
Sbjct: 40  LSKVDYIIQYASIYFARLLKALRPRIIKESVKRWPDKPVLERDLDVEYLPDVRGNSTCGG 99

Query: 79  IIGTLFKHQQLKPNILKEI---SEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGN-- 133
           I+     + + +   L  I    EE + V   +         ++I E    R   +G+  
Sbjct: 100 IVEDFVPYFRDRYEKLSRIIREREEARYVSPIKKDLEGGSDVKIIGEVNDVRETKNGHFI 159

Query: 134 IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPV 168
           I + +  TGVV  + G     G+F V DV +   +
Sbjct: 160 ISLED-TTGVVTVVLGKDREAGRF-VVDVLFDEVI 192


>gnl|CDD|182305 PRK10206, PRK10206, putative oxidoreductase; Provisional.
          Length = 344

 Score = 27.9 bits (62), Expect = 4.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 105 PQPQHTHFVSDSDELILEDELQRIPLHGNIDIH 137
           P   H HF SD DE++ + +++ + +  + D H
Sbjct: 45  PIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77


>gnl|CDD|214747 smart00630, Sema, semaphorin domain. 
          Length = 390

 Score = 27.3 bits (61), Expect = 6.0
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 14/113 (12%)

Query: 51  ARVSQKWGKS-VSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQH 109
           +  S     S V    LSD+N       V  G  FK  +   +     S      P+P  
Sbjct: 235 STSSNPIPGSAVCAFSLSDINA------VFNGP-FKECETSTSQWLPYSRGKVPYPRPGT 287

Query: 110 THFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDV 162
                 S + + ++ L        I  H  +  VV  + G P+         +
Sbjct: 288 CPNKPPSSKDLPDETLN------FIKSHPLMDEVVQPLTGRPLFVKTDSNYLL 334


>gnl|CDD|224499 COG1583, COG1583, CRISPR system related protein, RAMP superfamily
           [Defense    mechanisms].
          Length = 240

 Score = 26.5 bits (59), Expect = 9.6
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 152 VGNGKFKVSDV--CYATPVFKPRT--TLS-------NNENKYVNHVDAFTDDDFI--RLW 198
           +GN KFKV +V        FK  T  TLS         EN  + H D + DD+    RL 
Sbjct: 100 LGNVKFKVEEVKILKEKEKFKENTFITLSPIVVYTDKKENGKLKHYDLYPDDEKFYERLR 159

Query: 199 EGLF--FSMWMSDKPLIQKY 216
           E L   ++ +  +KP    +
Sbjct: 160 ENLKKKYNAFYGEKPEDNDF 179


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,898,044
Number of extensions: 1008336
Number of successful extensions: 835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 10
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)