RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8637
         (216 letters)



>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 127

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 5/48 (10%)

Query: 153 GNGKFKVSDVCYATPVF-KPRTTLSNNENKYVNHVDAFTDDDFIRLWE 199
           G G F  + + +   +   P      +    V   +        R+++
Sbjct: 20  GKGGFYFAGMSHQGSLLFLPDAVWGWD----VTKPEQIDRYSLQRVFD 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 812,282
Number of extensions: 37152
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)