BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8639
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 195/463 (42%), Gaps = 75/463 (16%)
Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
+G F I+ SG L V + LDRE + L A+D + N + + I I ++D+NDN
Sbjct: 48 TGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNR 105
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQYPE---GNHFSVD 219
P + V E + G+ + TA DADD + NG LRY ++ Q P N F+++
Sbjct: 106 PEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTIN 165
Query: 220 HLTG-TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS 278
+ TG +T+ LD E + + L+++ TD N + LS + TA + V D+NDN P F
Sbjct: 166 NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFT- 224
Query: 279 PTRGSLIYVSE--QTRVGSHVTKMTAVDQDSGDN--GRVTYVISGGNEDARFHLDHDKGI 334
++ + E + RV V +T D+D Y ISGG+ RF + D
Sbjct: 225 ----AMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNS 280
Query: 335 L-SLARVISEYDHQSKFRAVLNITASDH-----GI--PPKSSSLVINILSETVSTSLPTF 386
L V+ D ++ VL + A + GI PP+S++ TVS ++
Sbjct: 281 NDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTA--------TVSVTVIDV 332
Query: 387 LSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPS 446
Y A P II+ E GT + + A+ P
Sbjct: 333 NENPYFA-------PNPKIIR-------------------QEEGLHAGTMLTTLTAQDPD 366
Query: 447 TYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVT 506
Y+ + S PA + KID G +T LDRE+ + N + + T
Sbjct: 367 RYMQQNIRYTKLSD-------PA----NWLKIDPVNGQITTIAVLDRESPNVKNNIYNAT 415
Query: 507 DSKSGD-----YDTTNVFITILDVNDNAPEFKSGSCYPITIPE 544
S + T + I +LD+NDNAP+ PE
Sbjct: 416 FLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPE 458
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 155/362 (42%), Gaps = 44/362 (12%)
Query: 52 SRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTG-RAGGGHVMYSLTSLSP-TDHSGAFD 109
+R +F + N + E G V V + D+ A G + Y + S +P T F
Sbjct: 104 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 110 IDKSSGSLV-VARQLDRETCPEYKLEVRALDTSTSSNP----QSSAVAIKIEIVDVNDNA 164
I+ +G ++ VA LDRE +Y L ++A D NP ++A A+ I + DVNDN
Sbjct: 164 INNETGDIITVAAGLDREKVQQYTLIIQATDME--GNPTYGLSNTATAV-ITVTDVNDNP 220
Query: 165 PR------WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELR--YGLVRQYPEGNHF 216
P +GE P + V + N T TD D Y + P G F
Sbjct: 221 PEFTAMTFYGEVP-------ENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTG-RF 272
Query: 217 SV----DHLTGTLTLLQPLDYETLTSFILVVKVTDQ---AANISERLSTSLTARVVVKDL 269
++ + G +T+++P+D+ET F+L V +Q A I ++ T V V D+
Sbjct: 273 AILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDV 332
Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDS--GDNGRVTYVISGGNEDARFH 327
N+N P F +I E G+ +T +TA D D N R T + N
Sbjct: 333 NEN-PYFAP--NPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN---WLK 386
Query: 328 LDHDKGILSLARVISEYDHQSKFRAVLNIT--ASDHGIPPKSSSLVINILSETVSTSLPT 385
+D G ++ V+ K + N T ASD+GIPP S + + I ++ + P
Sbjct: 387 IDPVNGQITTIAVLDRESPNVK-NNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQ 445
Query: 386 FL 387
L
Sbjct: 446 VL 447
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 54/290 (18%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
I + E +R G ++ + D N + Y ++G D F ++ G LS+ +
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 341 IS-EYDHQSKFRA-VLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSED 398
+ E + RA ++I + P +VIN++ ++ + P FL ++ +V E
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENP---IDIVINVID--MNDNRPEFLHQVWNGSVPEG 120
Query: 399 AIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF 458
+ PGTY++ V A + +A+ G ++++++PST
Sbjct: 121 SKPGTYVMTVTA-------------IDADDPNALNGMLRYRILSQAPST----------- 156
Query: 459 SGYNLTYMIPAGVADDMFKIDAETG-VVTLARSLDRETVDQYNLVVHVTDSKS----GDY 513
+ +MF I+ ETG ++T+A LDRE V QY L++ TD + G
Sbjct: 157 ------------PSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204
Query: 514 DTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFH 563
+T IT+ DVNDN PEF + + Y +PEN V TD H
Sbjct: 205 NTATAVITVTDVNDNPPEFTAMTFY-GEVPENRVDVIVANLTVTDKDQPH 253
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 204/459 (44%), Gaps = 72/459 (15%)
Query: 91 HVMYSLTSLSPTDH-SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T + G F I+ +G ++V R LDRE +Y L A+ S + +P
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV--SENGSPVEE 96
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGL 206
+ I I ++D NDN P++ ++ V E G+ + +ATD DD NG L Y +
Sbjct: 97 PMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI 156
Query: 207 VRQYPE---GNHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTA 262
++Q PE N F+++ TG ++L+ LD E + L V+ TD LS A
Sbjct: 157 LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG---AGLSVEGKA 213
Query: 263 RVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDN--GRVTYVISGG 320
+ + D NDNAP+F T +L+ +E +G V +++ D D + Y I
Sbjct: 214 IIQITDANDNAPIFDPKTYTALVPENE---IGFEVQRLSVTDLDMPGTPAWQAVYKIRV- 269
Query: 321 NEDARFHLDHD----KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILS 376
NE F++ D +GIL+ A+ + D + + + VL IT + +
Sbjct: 270 NEGGFFNITTDPESNQGILTTAKGL---DFELRKQYVLQITVEN---------------A 311
Query: 377 ETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTY 436
E S LPT + ED + + V+R VSED G
Sbjct: 312 EPFSVPLPTSTA--TVTVTVEDVNEAPFFVPAVSR-------------VDVSEDLSRGEK 356
Query: 437 IIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV 496
II +VA+ P + +S F G + PA ++ + G+VT +LDRE+
Sbjct: 357 IISLVAQDPDKQ--QIQKLSYFIGND-----PA----RWLTVNKDNGIVTGNGNLDRESE 405
Query: 497 ----DQYNLVVHVTDSK-SGDYDTTNVFITILDVNDNAP 530
+ Y +++ VTD S T + + +LDVNDN P
Sbjct: 406 YVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 444
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 111/285 (38%), Gaps = 54/285 (18%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNED----ARFHLDHDKGILSLARV 340
I VSE R G ++ + + +V Y I+G D F ++ + G + + R
Sbjct: 13 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 71
Query: 341 I--SEYDHQSKFRAVLNITA-SDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
+ EYD + VL+ A S++G P + + IN++ + + + P F + +V
Sbjct: 72 LDREEYD-----KYVLSSHAVSENGSPVEEPMEITINVIDQ--NDNRPKFTQDVFRGSVR 124
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
E PGT ++ V A + D++ G ++ + P + ++
Sbjct: 125 EGVQPGTQVMAVSATDEDD------------NIDSLNGVLSYSILKQDPEEPIPNL---- 168
Query: 457 DFSGYNLTYMIPAGVADDMFKIDAETGVVTL-ARSLDRETVDQYNLVVHVTDSKSGDYDT 515
F I+ ETGV++L LDRE +Y L V TD +
Sbjct: 169 -------------------FTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 209
Query: 516 T-NVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDF 559
I I D NDNAP F Y +PEN V TD
Sbjct: 210 EGKAIIQITDANDNAPIFDP-KTYTALVPENEIGFEVQRLSVTDL 253
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 5/169 (2%)
Query: 109 DIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWG 168
D + + G L A+ LD E +Y L++ + S P ++ A V+ + AP +
Sbjct: 280 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFV 339
Query: 169 ENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH--LTGTLT 226
+ V+ED G I + A D D +L Y + + D+ +TG
Sbjct: 340 PAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGN 399
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
L + +Y ++ +++ VTD ++ T + + V D+NDN PV
Sbjct: 400 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLI---LHVLDVNDNGPV 445
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 128/458 (27%), Positives = 201/458 (43%), Gaps = 72/458 (15%)
Query: 92 VMYSLTSLSPTDH-SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSA 150
V YS+T + G F I+ +G ++V R LDRE +Y L A+ S + +P
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV--SENGSPVEEP 246
Query: 151 VAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLV 207
+ I I ++D NDN P++ ++ V E G+ + +ATD DD NG L Y ++
Sbjct: 247 MEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSIL 306
Query: 208 RQYPEG---NHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTAR 263
+Q PE N F+++ TG ++L+ LD E + L V+ TD LS A
Sbjct: 307 KQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG---AGLSVEGKAI 363
Query: 264 VVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDN--GRVTYVISGGN 321
+ + D NDNAP+F T +L+ +E +G V +++ D D + Y I N
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPENE---IGFEVQRLSVTDLDMPGTPAWQAVYKIRV-N 419
Query: 322 EDARFHLDHD----KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSE 377
E F++ D +GIL+ A+ + D + + + VL IT + +E
Sbjct: 420 EGGFFNITTDPESNQGILTTAKGL---DFELRKQYVLQITVEN---------------AE 461
Query: 378 TVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYI 437
S LPT + ED + + V+R VSED G I
Sbjct: 462 PFSVPLPTSTA--TVTVTVEDVNEAPFFVPAVSR-------------VDVSEDLSRGEKI 506
Query: 438 IKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV- 496
I +VA+ P L+Y I A ++ + G+VT +LDRE+
Sbjct: 507 ISLVAQDPDKQQIQ----------KLSYFIGNDPAR-WLTVNKDNGIVTGNGNLDRESEY 555
Query: 497 ---DQYNLVVHVTDSK-SGDYDTTNVFITILDVNDNAP 530
+ Y +++ VTD S T + + +LDVNDN P
Sbjct: 556 VKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 593
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 112/285 (39%), Gaps = 54/285 (18%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNED----ARFHLDHDKGILSLARV 340
I VSE R G ++ + + +V Y I+G D F ++ + G + + R
Sbjct: 162 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 220
Query: 341 I--SEYDHQSKFRAVLNITA-SDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
+ EYD + VL+ A S++G P + + IN++ + + + P F + +V
Sbjct: 221 LDREEYD-----KYVLSSHAVSENGSPVEEPMEITINVIDQ--NDNRPKFTQDVFRGSVR 273
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
E PGT ++ V A + D++ G ++ + P
Sbjct: 274 EGVQPGTQVMAVSATDEDD------------NIDSLNGVLSYSILKQDPEE--------- 312
Query: 457 DFSGYNLTYMIPAGVADDMFKIDAETGVVTL-ARSLDRETVDQYNLVVHVTDSKSGDYDT 515
IP ++F I+ ETGV++L LDRE +Y L V TD +
Sbjct: 313 ---------PIP-----NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 358
Query: 516 T-NVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDF 559
I I D NDNAP F Y +PEN V TD
Sbjct: 359 EGKAIIQITDANDNAPIFDP-KTYTALVPENEIGFEVQRLSVTDL 402
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 5/169 (2%)
Query: 109 DIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWG 168
D + + G L A+ LD E +Y L++ + S P ++ A V+ + AP +
Sbjct: 429 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFV 488
Query: 169 ENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH--LTGTLT 226
+ V+ED G I + A D D +L Y + + D+ +TG
Sbjct: 489 PAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGN 548
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
L + +Y ++ +++ VTD ++ T + + V D+NDN PV
Sbjct: 549 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLI---LHVLDVNDNGPV 594
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 22/272 (8%)
Query: 108 FDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRW 167
F I+ +G + ++LDRE EY L +A+D T+ P I++ D+NDNAP +
Sbjct: 48 FQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN-KPLEPPSEFIIKVQDINDNAPEF 106
Query: 168 GENPLTIPVNEDTLVGSTIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGT 224
P V E +++G+++ N TATDADD G++ +L Y ++ P +FS++ T
Sbjct: 107 LNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP---YFSIEPETAI 163
Query: 225 L-TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGS 283
+ T L +D E +++V++ D + S LS + T V + D+NDN P F S
Sbjct: 164 IKTALPNMDREAKEEYLVVIQAKDMGGH-SGGLSGTTTLTVTLTDVNDNPPKFAQ----S 218
Query: 284 LIY--VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK----GILSL 337
L + V E +G+ + ++ A DQD G+N + +Y I G+ A F + D G++ L
Sbjct: 219 LYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRL 278
Query: 338 ARVISEYDHQSKFRAVLNITASDHGIPPKSSS 369
+ + D ++K L + A++ I P+ SS
Sbjct: 279 RKPL---DFETKKSYTLKVEAANIHIDPRFSS 307
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 25/208 (12%)
Query: 71 IGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDKSSGSLVVAR-QLDRET 127
+G +V NV +TD+ G ++YS+ P F I+ + + A +DRE
Sbjct: 121 LGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY-----FSIEPETAIIKTALPNMDREA 175
Query: 128 CPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIW 187
EY + ++A D S S + + + DVNDN P++ ++ V ED ++G+ I
Sbjct: 176 KEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIG 235
Query: 188 NFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLT-------GTLTLLQPLDYETLTSFI 240
A D D G N + Y ++ +G+ ++ +T G + L +PLD+ET S+
Sbjct: 236 RVKANDQDIGENAQSSYDII----DGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYT 291
Query: 241 LVVKVTDQAANISERLSTSLTARVVVKD 268
L V +AANI + ++R KD
Sbjct: 292 LKV----EAANI--HIDPRFSSRGPFKD 313
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 17/225 (7%)
Query: 192 TDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAAN 251
TD D GS +++Y ++ G F ++ +TG + ++ LD E + L + D N
Sbjct: 26 TDLDPGSK-KIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN 83
Query: 252 ISERLSTSLTARVVVKDLNDNAPVFVS-PTRGSLIYVSEQTRVGSHVTKMTAVDQDS--- 307
+ L + V+D+NDNAP F++ P + V E + +G+ VT +TA D D
Sbjct: 84 --KPLEPPSEFIIKVQDINDNAPEFLNGPYHAT---VPEMSILGTSVTNVTATDADDPVY 138
Query: 308 GDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPK- 366
G++ ++ Y I G F ++ + I+ A + D ++K ++ I A D G
Sbjct: 139 GNSAKLVYSILEGQ--PYFSIEPETAIIKTA--LPNMDREAKEEYLVVIQAKDMGGHSGG 194
Query: 367 -SSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA 410
S + + + V+ + P F YH +V ED + GT I +V A
Sbjct: 195 LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKA 239
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 21/120 (17%)
Query: 447 TYVY-HMYLISDFSG-----------------YNLTYMIPAGVADDMFKIDAETGVVTLA 488
++V+ M+++ +FSG + Y++ A +F+I+ TG +
Sbjct: 1 SWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAI 60
Query: 489 RSLDRETVDQYNLVVHVTDSKSGD--YDTTNVFITILDVNDNAPEFKSGSCYPITIPENS 546
+ LDRE +Y L D ++ + I + D+NDNAPEF +G Y T+PE S
Sbjct: 61 KRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGP-YHATVPEMS 119
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 63/253 (24%)
Query: 304 DQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGI 363
D D G ++ Y++SG F ++ G + I D + K L A D
Sbjct: 27 DLDPGSK-KIKYILSGDGAGTIFQINDITGDI---HAIKRLDREEKAEYTLTAQAVDFET 82
Query: 364 -----PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS--TY 416
PP S +I + + ++ + P FL+ YHA V E +I GT + V A Y
Sbjct: 83 NKPLEPP--SEFIIKV--QDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVY 138
Query: 417 GNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMF 476
GN L Y I G F
Sbjct: 139 GNSA-----------------------------------------KLVYSILEGQP--YF 155
Query: 477 KIDAETGVVTLAR-SLDRETVDQYNLVVHVTD---SKSGDYDTTNVFITILDVNDNAPEF 532
I+ ET ++ A ++DRE ++Y +V+ D G TT + +T+ DVNDN P+F
Sbjct: 156 SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKF 215
Query: 533 KSGSCYPITIPEN 545
+ S Y ++PE+
Sbjct: 216 -AQSLYHFSVPED 227
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 160/351 (45%), Gaps = 32/351 (9%)
Query: 84 TGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTST 142
+ R V YS+T G F I++ +G L V + LDRE +Y L A+ S+
Sbjct: 26 SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SS 83
Query: 143 SSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---N 199
+ + I I + D NDN P + + V E + G+++ +ATDADD N
Sbjct: 84 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 200 GELRYGLVRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-E 254
+ Y +V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGE 199
Query: 255 RLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVT 314
LST+ A + VKD+NDNAPVF T + +E V + + + D D+ +
Sbjct: 200 GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE---VNARIATLKVTDDDAPNTPAWK 256
Query: 315 YVISGGNE-DARFHLDHDK----GILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSS 369
V + N+ D +F + D GIL A+ + D ++K + +L++ + P S
Sbjct: 257 AVYTVVNDPDQQFVVVTDPTTNDGILKTAKGL---DFEAKQQYILHVRVENEE--PFEGS 311
Query: 370 LV----INILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTY 416
LV + P F+ V ED G I AR P T+
Sbjct: 312 LVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTF 362
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEFKSGS 536
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D+NDNAP F S
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNP-S 224
Query: 537 CYPITIPENSEAANVHTFIATD 558
Y +PEN A + T TD
Sbjct: 225 TYQGQVPENEVNARIATLKVTD 246
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 92
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 153 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 208
Query: 262 ARVVVKDLNDNAPVF 276
A + VKD+NDNAPVF
Sbjct: 209 AVITVKDINDNAPVF 223
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 167
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEF 532
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D+NDNAP F
Sbjct: 168 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVF 223
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 49 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 104
Query: 527 DNAPEF 532
DN PEF
Sbjct: 105 DNRPEF 110
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 20/216 (9%)
Query: 56 FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
F YL I ED P+G +V +++ D + +S + S F ++ +G
Sbjct: 13 FDTYLL---ISEDTPVGSSVTQLLARDMDNDP-------LVFGVSGEEASRFFAVEPDTG 62
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
+ + + LDRET E+ +E S S + + I++ DVNDNAP + P ++
Sbjct: 63 VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR 117
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
+ E+T VG+ I+ ATD D G+ G + Y P F++D G +T++Q LDYE
Sbjct: 118 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 174
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLND 271
++ L V TDQ + + LST +++ D+ D
Sbjct: 175 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDMQD 208
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
++EDT VGS++ A D D N L +G V F+V+ TG + L QPLD ET
Sbjct: 19 ISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRET 74
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
+ F + V+D I+ +++ + V D+NDNAP F + + + + E T VG+
Sbjct: 75 KSEFTVEFSVSDHQGVITRKVN------IQVGDVNDNAPTFHN--QPYSVRIPENTPVGT 126
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
+ + A D D G G V Y S F +D +GI++ VI E D++ L
Sbjct: 127 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 181
Query: 356 ITASDH 361
+ A+D
Sbjct: 182 VNATDQ 187
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
+ N+ + L+SED G+ + +++AR D L + + A
Sbjct: 8 FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRF 54
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
F ++ +TGVV L + LDRET ++ + V+D + T V I + DVNDNAP F +
Sbjct: 55 FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGDVNDNAPTFHN- 111
Query: 536 SCYPITIPENS 546
Y + IPEN+
Sbjct: 112 QPYSVRIPENT 122
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 61/259 (23%)
Query: 274 PVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKG 333
P F + + + +SE T VGS VT++ A D DN + + +SG F ++ D G
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDM---DNDPLVFGVSGEEASRFFAVEPDTG 62
Query: 334 ILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSYH 392
++ L + + D ++K + + SDH G+ + +NI V+ + PTF + Y
Sbjct: 63 VVWLRQPL---DRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHNQPYS 115
Query: 393 ANVSEDAIPGTYIIKVVARSP--STYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVY 450
+ E+ GT I V A P G+ +Y+ + PS +
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-------------------FQPPSPF-- 154
Query: 451 HMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS-K 509
F ID+ G+VT+ + LD E Y L V+ TD K
Sbjct: 155 -------------------------FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDK 189
Query: 510 SGDYDT-TNVFITILDVND 527
+ T N+ I I D+ D
Sbjct: 190 TRPLSTLANLAIIITDMQD 208
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 56 FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
F YL I ED P+G +V +++ D + +S + S F ++ +G
Sbjct: 14 FDTYLL---ISEDTPVGSSVTQLLARDMDNDP-------LVFGVSGEEASRFFAVEPDTG 63
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
+ + + LDRET E+ +E S S + + I++ DVNDNAP + P ++
Sbjct: 64 VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR 118
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
+ E+T VG+ I+ ATD D G+ G + Y P F++D G +T++Q LDYE
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 175
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDL 269
++ L V TDQ + + LST +++ DL
Sbjct: 176 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDL 207
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
++EDT VGS++ A D D N L +G V F+V+ TG + L QPLD ET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
+ F + V+D I+ +++ + V D+NDNAP F + + + + E T VG+
Sbjct: 76 KSEFTVEFSVSDHQGVITRKVN------IQVGDVNDNAPTFHN--QPYSVRIPENTPVGT 127
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
+ + A D D G G V Y S F +D +GI++ VI E D++ L
Sbjct: 128 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 182
Query: 356 ITASDH 361
+ A+D
Sbjct: 183 VNATDQ 188
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
+ N+ + L+SED G+ + +++AR D L + + A
Sbjct: 9 FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRF 55
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
F ++ +TGVV L + LDRET ++ + V+D + T V I + DVNDNAP F +
Sbjct: 56 FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGDVNDNAPTFHN- 112
Query: 536 SCYPITIPENS 546
Y + IPEN+
Sbjct: 113 QPYSVRIPENT 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 59/238 (24%)
Query: 274 PVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKG 333
P F + + + +SE T VGS VT++ A D DN + + +SG F ++ D G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDM---DNDPLVFGVSGEEASRFFAVEPDTG 63
Query: 334 ILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSYH 392
++ L + + D ++K + + SDH G+ + +NI V+ + PTF + Y
Sbjct: 64 VVWLRQPL---DRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHNQPYS 116
Query: 393 ANVSEDAIPGTYIIKVVARSP--STYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVY 450
+ E+ GT I V A P G+ +Y+ + PS +
Sbjct: 117 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-------------------FQPPSPF-- 155
Query: 451 HMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS 508
F ID+ G+VT+ + LD E Y L V+ TD
Sbjct: 156 -------------------------FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 56 FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
F YL I ED P+G +V +++ D +++ + + S F ++ +G
Sbjct: 14 FDTYLL---ISEDTPVGSSVTQLLARD----MDNDPLVFGVPG---EEASRFFAVEPDTG 63
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
+ + + LDRET E+ +E S S + + I++ DVNDNAP + P ++
Sbjct: 64 VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR 118
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
+ E+T VG+ I+ ATD D G+ G + Y P F++D G +T++Q LDYE
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 175
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDL 269
++ L V TDQ + + LST +++ DL
Sbjct: 176 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDL 207
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
++EDT VGS++ A D D N L +G+ + F+V+ TG + L QPLD ET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEE-ASRFFAVEPDTGVVWLRQPLDRET 75
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
+ F + V+D I+ +++ + V D+NDNAP F + + + + E T VG+
Sbjct: 76 KSEFTVEFSVSDHQGVITRKVN------IQVGDVNDNAPTFHN--QPYSVRIPENTPVGT 127
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
+ + A D D G G V Y S F +D +GI++ VI E D++ L
Sbjct: 128 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 182
Query: 356 ITASDH 361
+ A+D
Sbjct: 183 VNATDQ 188
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
+ N+ + L+SED G+ + +++AR D L + +P A
Sbjct: 9 FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVPGEEASRF 55
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
F ++ +TGVV L + LDRET ++ + V+D + T V I + DVNDNAP F +
Sbjct: 56 FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGDVNDNAPTFHN- 112
Query: 536 SCYPITIPENS 546
Y + IPEN+
Sbjct: 113 QPYSVRIPENT 123
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 59/238 (24%)
Query: 274 PVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKG 333
P F + + + +SE T VGS VT++ A D DN + + + G F ++ D G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDM---DNDPLVFGVPGEEASRFFAVEPDTG 63
Query: 334 ILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSYH 392
++ L + + D ++K + + SDH G+ + +NI V+ + PTF + Y
Sbjct: 64 VVWLRQPL---DRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHNQPYS 116
Query: 393 ANVSEDAIPGTYIIKVVARSP--STYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVY 450
+ E+ GT I V A P G+ +Y+ + PS +
Sbjct: 117 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-------------------FQPPSPF-- 155
Query: 451 HMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS 508
F ID+ G+VT+ + LD E Y L V+ TD
Sbjct: 156 -------------------------FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 15/192 (7%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 34 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 91
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 92 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 151
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 152 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 207
Query: 262 ARVVVKDLNDNA 273
A + VKD+NDNA
Sbjct: 208 AVITVKDINDNA 219
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 112 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 166
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNA 529
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D+NDNA
Sbjct: 167 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNA 219
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 48 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 103
Query: 527 DNAPEF 532
DN PEF
Sbjct: 104 DNRPEF 109
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Query: 56 FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
F YL I ED P+G +V +++ D + +S + S F ++ +G
Sbjct: 14 FDTYLL---ISEDTPVGSSVTQLLARDMDNDP-------LVFGVSGEEASRFFAVEPDTG 63
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
+ + + LDRET E+ +E S S + + I++ VNDNAP + P ++
Sbjct: 64 VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVR 118
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
+ E+T VG+ I+ ATD D G+ G + Y P F++D G +T++Q LDYE
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 175
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDL 269
++ L V TDQ + + LST +++ DL
Sbjct: 176 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDL 207
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
++EDT VGS++ A D D N L +G V F+V+ TG + L QPLD ET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
+ F + V+D I+ +++ + V +NDNAP F + + + + E T VG+
Sbjct: 76 KSEFTVEFSVSDHQGVITRKVN------IQVGGVNDNAPTFHN--QPYSVRIPENTPVGT 127
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
+ + A D D G G V Y S F +D +GI++ VI E D++ L
Sbjct: 128 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 182
Query: 356 ITASDH 361
+ A+D
Sbjct: 183 VNATDQ 188
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
+ N+ + L+SED G+ + +++AR D L + + A
Sbjct: 9 FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRF 55
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
F ++ +TGVV L + LDRET ++ + V+D + T V I + VNDNAP F +
Sbjct: 56 FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGGVNDNAPTFHN- 112
Query: 536 SCYPITIPENS 546
Y + IPEN+
Sbjct: 113 QPYSVRIPENT 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 59/238 (24%)
Query: 274 PVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKG 333
P F + + + +SE T VGS VT++ A D DN + + +SG F ++ D G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDM---DNDPLVFGVSGEEASRFFAVEPDTG 63
Query: 334 ILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSYH 392
++ L + + D ++K + + SDH G+ + +NI V+ + PTF + Y
Sbjct: 64 VVWLRQPL---DRETKSEFTVEFSVSDHQGVITRK----VNIQVGGVNDNAPTFHNQPYS 116
Query: 393 ANVSEDAIPGTYIIKVVARSP--STYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVY 450
+ E+ GT I V A P G+ +Y+ + PS +
Sbjct: 117 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-------------------FQPPSPF-- 155
Query: 451 HMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS 508
F ID+ G+VT+ + LD E Y L V+ TD
Sbjct: 156 -------------------------FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 17/209 (8%)
Query: 70 PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCP 129
P VG VV +D R G + + D G F I++++GS+ V R LDRET
Sbjct: 17 PFPRDVGKVVDSD---RPEGSKFRLTGKGVD-QDPKGTFRINENTGSVSVTRTLDRETIA 72
Query: 130 EYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNF 189
Y+L V D S + V +++ ++D NDN P + E P V E + G+T+
Sbjct: 73 TYQLYVETTDASGKT--LEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM 130
Query: 190 TATDADDGS--NGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQP--LDYETLTS--F 239
TA DADD + N LRY + +Q P+ N F +D G + T++ P LD ETL + +
Sbjct: 131 TAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKY 190
Query: 240 ILVVKVTDQAANISERLSTSLTARVVVKD 268
L+++ D A + L+ + TA +V+ D
Sbjct: 191 ELIIEAQDMAG-LDVGLTGTATATIVIDD 218
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 170 NPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQ 229
+P+ IP N+ + +D +GS L V Q P+G F ++ TG++++ +
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGT-FRINENTGSVSVTR 64
Query: 230 PLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLI-YVS 288
LD ET+ ++ L V+ TD + L + V+V D NDN P+F G I +V
Sbjct: 65 TLDRETIATYQLYVETTDASGKT---LEGPVPLEVIVIDQNDNRPIF---REGPYIGHVM 118
Query: 289 EQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDA----RFHLDHDKG----ILSLA 338
E + G+ V +MTA D D + DN + Y I D F++D +KG ++S A
Sbjct: 119 EGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPA 178
Query: 339 RVISEYDHQSKFRAVL 354
+ E K+ ++
Sbjct: 179 LLDRETLENPKYELII 194
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVFITILDVNDNAPEFKS 534
F+I+ TG V++ R+LDRET+ Y L V TD+ + + + ++D NDN P F+
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFRE 110
Query: 535 G 535
G
Sbjct: 111 G 111
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 461 YNLTYMIPAGVADDMFKIDAETG-VVTLARS--LDRETVD--QYNLVVHVTDSKSGDYDT 515
YN+ P + +MF ID E G +VT+ LDRET++ +Y L++ D D
Sbjct: 147 YNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGL 206
Query: 516 TNVFITILDVND 527
T + ++D
Sbjct: 207 TGTATATIVIDD 218
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
+G F I+ SG L V + LDRE + L A+D + N + + I I ++D+NDN
Sbjct: 48 TGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNR 105
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQY---PEGNHFSVD 219
P + V E + G+ + TA DADD + NG LRY +V Q P N F+++
Sbjct: 106 PEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTIN 165
Query: 220 HLTG-TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ TG +T+ LD E + + L+++ TD N + LS + TA + V D
Sbjct: 166 NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 43/160 (26%)
Query: 370 LVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSE 429
+VIN++ ++ + P FL ++ +V E + PGTY++ V A +
Sbjct: 94 IVINVID--MNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTA-------------IDADDP 138
Query: 430 DAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETG-VVTLA 488
+A+ G ++V+++PST + +MF I+ ETG ++T+A
Sbjct: 139 NALNGMLRYRIVSQAPSTP-----------------------SPNMFTINNETGDIITVA 175
Query: 489 RSLDRETVDQYNLVVHVTDSKS----GDYDTTNVFITILD 524
LDRE V QY L++ TD + G +T IT+ D
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRY---GLVRQYPEGNHFSVDHLTG 223
W P+ +P N G +D N LRY G P F ++ ++G
Sbjct: 2 WVIPPINLPENSR---GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RG 282
L++ +PLD E + F L D N ++ + + V D+NDN P F+ G
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGN---QVENPIDIVINVIDMNDNRPEFLHQVWNG 115
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDSGD--NGRVTYVI 317
S V E ++ G++V +TA+D D + NG + Y I
Sbjct: 116 S---VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRI 149
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEFK 533
+F I+ +G +++ + LDRE + +++L H D + ++ I ++D+NDN PEF
Sbjct: 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL 109
Query: 534 SGSCYPITIPENSEAAN-VHTFIATD 558
+ ++PE S+ V T A D
Sbjct: 110 H-QVWNGSVPEGSKPGTYVMTVTAID 134
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
+G F I+ SG L V + LDRE + L A+D + N + + I I ++D+NDN
Sbjct: 48 TGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNR 105
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQY---PEGNHFSVD 219
P + V E + G+ + TA DADD + NG LRY ++ Q P N F+++
Sbjct: 106 PEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTIN 165
Query: 220 HLTG-TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ TG +T+ LD E + + L+++ TD N + LS + TA + V D
Sbjct: 166 NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 43/160 (26%)
Query: 370 LVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSE 429
+VIN++ ++ + P FL ++ +V E + PGTY++ V A +
Sbjct: 94 IVINVID--MNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTA-------------IDADDP 138
Query: 430 DAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETG-VVTLA 488
+A+ G ++++++PST + +MF I+ ETG ++T+A
Sbjct: 139 NALNGMLRYRILSQAPSTP-----------------------SPNMFTINNETGDIITVA 175
Query: 489 RSLDRETVDQYNLVVHVTDSKS----GDYDTTNVFITILD 524
LDRE V QY L++ TD + G +T IT+ D
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRY---GLVRQYPEGNHFSVDHLTG 223
W P+ +P N G +D N LRY G P F ++ ++G
Sbjct: 2 WVIPPINLPENSR---GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RG 282
L++ +PLD E + F L D N ++ + + V D+NDN P F+ G
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGN---QVENPIDIVINVIDMNDNRPEFLHQVWNG 115
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDSGD--NGRVTYVI 317
S V E ++ G++V +TA+D D + NG + Y I
Sbjct: 116 S---VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRI 149
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEFK 533
+F I+ +G +++ + LDRE + +++L H D + ++ I ++D+NDN PEF
Sbjct: 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL 109
Query: 534 SGSCYPITIPENSEAAN-VHTFIATD 558
+ ++PE S+ V T A D
Sbjct: 110 H-QVWNGSVPEGSKPGTYVMTVTAID 134
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 70 PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCP 129
P +VG V+ ++ T G S + D G F I++ SG + V R LDRE
Sbjct: 16 PFPRSVGKVIRSEGTE---GAKFRLSGKGVD-QDPKGIFRINEISGDVSVTRPLDREAIA 71
Query: 130 EYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNF 189
Y+LEV D S V + I ++D NDN P + E P V E + G+T+
Sbjct: 72 NYQLEVEVTDLSGKI--IDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRM 129
Query: 190 TATDADDGS--NGELRYGLVRQ---YPEGNHFSVDHLTGTL-TLLQP--LDYETLTS--F 239
TA DADD S N LRY +++Q P N F +D G + T++ P LD ET+ + +
Sbjct: 130 TAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKY 189
Query: 240 ILVVKVTDQAANISERLSTSLTARVVVKD 268
LV++ D + L+ + TA +++ D
Sbjct: 190 ELVIEAKDMGGH-DVGLTGTATATILIDD 217
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 171 PLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
P+ IP N+ ++ ++ +G+ L V Q P+G F ++ ++G +++ +P
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKG-IFRINEISGDVSVTRP 64
Query: 231 LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLI-YVSE 289
LD E + ++ L V+VTD + I + + + V D NDN P+F G + +V E
Sbjct: 65 LDREAIANYQLEVEVTDLSGKI---IDGPVRLDISVIDQNDNRPMF---KEGPYVGHVME 118
Query: 290 QTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDA----RFHLDHDKG--ILSLARVI 341
+ G+ V +MTA D D S DN + Y I F++D +KG + ++ V+
Sbjct: 119 GSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVL 178
Query: 342 SEYDHQSKFRAVLNITASDHG 362
+ + + L I A D G
Sbjct: 179 LDRETMETPKYELVIEAKDMG 199
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVFITILDVNDNAPEFK 533
+F+I+ +G V++ R LDRE + Y L V VTD D + I+++D NDN P FK
Sbjct: 49 IFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFK 108
Query: 534 SG 535
G
Sbjct: 109 EG 110
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 461 YNLTYMIPAGVADDMFKIDAETG-VVTLARS--LDRETVD--QYNLVVHVTDSKSGDYDT 515
YN+ P + +MF ID E G +VT+ LDRET++ +Y LV+ D D
Sbjct: 146 YNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMGGHDVGL 205
Query: 516 TNVFITILDVND 527
T + ++D
Sbjct: 206 TGTATATILIDD 217
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 19/189 (10%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ SSN ++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV----SSNGEAV 88
Query: 150 A--VAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRY 204
A + I I + D NDN P + + V E + G+++ +ATDADD N + Y
Sbjct: 89 ADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 205 GLVRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTS 259
+V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTT 204
Query: 260 LTARVVVKD 268
A + VKD
Sbjct: 205 AKAVITVKD 213
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 207 AVITVKD 213
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 207 AVITVKD 213
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 207 AVITVKD 213
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 207 AVITVKD 213
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 32 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 89
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 90 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 149
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 150 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 205
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 206 AVITVKD 212
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 46 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 101
Query: 527 DNAPEF 532
DN PEF
Sbjct: 102 DNRPEF 107
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 110 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 164
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 165 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 212
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 207 AVITVKD 213
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 92
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 153 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 208
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 209 AVITVKD 215
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 49 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 104
Query: 527 DNAPEF 532
DN PEF
Sbjct: 105 DNRPEF 110
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 167
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 168 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 215
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A S++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHA--DSSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++L LD E+ ++ LVV QAA++ E LST+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 207 AVITVKD 213
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY--DTTNVFITILDV 525
P GV F I+ ETG + + + LDRE + +Y L H DS +G+ D + IT+ D
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHA-DSSNGEAVEDPMEIVITVTDQ 101
Query: 526 NDNAPEF 532
NDN PEF
Sbjct: 102 NDNRPEF 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV++ L LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 90 GHVMYSLTSL-SPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQS 148
G V YS+T + T G F I++ +G L V LDRE Y L A+ S++ N
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV--SSNGNAVE 89
Query: 149 SAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYG 205
+ I I + D NDN P + + V E L G+++ TATDADD N + Y
Sbjct: 90 DPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYT 149
Query: 206 LVRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTD 247
++ Q PE N F+++ TG ++++ LD E+ ++ LVV+ D
Sbjct: 150 ILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + LDRE + Y L H V+ + + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNKPEF 108
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V E A+PGT +++V A V Y+ + Y + P +MF I
Sbjct: 111 EVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAI-----AYTILSQDPELPDKNMFTI 165
Query: 479 DAETGVVTLARS-LDRETVDQYNLVVHVTD 507
+ TGV+++ + LDRE+ Y LVV D
Sbjct: 166 NRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
+ I I + D NDN P + + V E + G+++ +ATDADD N + Y +
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTL-LQPLDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
V Q PE N F+V+ TG +++ LD E+ ++ LVV QAA++ E LST+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
A + VKD
Sbjct: 207 AVITVKD 213
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 47 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
DN PEF
Sbjct: 103 DNRPEF 108
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
EVF V+E A+PGT ++KV A V Y+ + Y + P +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVTLARS-LDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILD 524
+ +TGV+++ S LDRE+ Y LVV D + TT IT+ D
Sbjct: 166 NRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 43/307 (14%)
Query: 93 MYSLTSLSP-TDHS-----------GAFDIDKSSGSLVVAR-----QLDRETCPEYKLEV 135
+++L + P TDH+ G F++D+ SG +V R QLD E Y L V
Sbjct: 132 VFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSG-VVRTRGTDLFQLDME----YVLYV 186
Query: 136 RALDTSTSSNPQ--SSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATD 193
+A D + + + S ++ IV AP++ + E+ S I + A
Sbjct: 187 KAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS 245
Query: 194 ADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS---FILVVKVTDQAA 250
D E+RY L Q F++ +G + L + LD+E L + L+V T+ +
Sbjct: 246 FADR---EIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG 302
Query: 251 NISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDN 310
STS+ + V D+NDNAP F P + V E +G+ + ++ A+D DSG N
Sbjct: 303 G----FSTSVDLTIRVTDVNDNAPKFELPDYQAH-NVDEDIPLGTSILRVKAMDSDSGSN 357
Query: 311 GRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSL 370
+ Y++S D F +D + GI+ + + ++ + + + +TA D G PPKS
Sbjct: 358 AEIEYLVS----DDHFAVDSN-GIIVNNKQLDADNNNAYYEFI--VTAKDKGEPPKSGVA 410
Query: 371 VINILSE 377
+ + ++
Sbjct: 411 TVRVYTK 417
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 119/321 (37%), Gaps = 60/321 (18%)
Query: 223 GTLTLLQPLDYETL---TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSP 279
G + + + DYE L + V +T+ N + + + ++VKD+ND P F++
Sbjct: 55 GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINR 114
Query: 280 TRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLAR 339
V + V + A D D+ N + Y I RF +D G++ R
Sbjct: 115 PLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVV---R 169
Query: 340 VISEYDHQSKFRAVLNITASDHGIP---PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
Q VL + A D + S LS P F PSY A +
Sbjct: 170 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP 229
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
E+ + II + A+S
Sbjct: 230 ENQKKDSDIISIKAKS-------------------------------------------- 245
Query: 457 DFSGYNLTYMIPA-GVADDMFKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGD 512
F+ + Y + A G F I +G+V LA+ LD E + Q Y+L+V T+ G
Sbjct: 246 -FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF 304
Query: 513 YDTTNVFITILDVNDNAPEFK 533
+ ++ I + DVNDNAP+F+
Sbjct: 305 STSVDLTIRVTDVNDNAPKFE 325
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 29/332 (8%)
Query: 112 KSSGSLVVARQLD-RETCPEYKLEVRALDTSTSSNPQ---SSAVAIKIEIVDVNDNAPRW 167
+++G++ V ++ D E PE ++ + T+ N + + I + DVND P +
Sbjct: 52 ETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF 111
Query: 168 GENPLTIP--VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTL 225
PL + V + + ++ A D D N + Y +VR G F VD +G +
Sbjct: 112 INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR-TGGRFEVDERSGVV 168
Query: 226 ----TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTR 281
T L LD E ++L VK DQ + +R S + AP F P+
Sbjct: 169 RTRGTDLFQLDME----YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPS- 223
Query: 282 GSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDA-RFHLDHDKGILSLARV 340
Y +E + + ++ S + + Y + + A F++ GI+ LA+
Sbjct: 224 ----YEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKE 279
Query: 341 ISEYDHQSKFRAVLNITAS-DHGIPPKSSSLVINILSETVSTSLPTFLSPSYHA-NVSED 398
+ D + L +TA+ D G S L I + V+ + P F P Y A NV ED
Sbjct: 280 LDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTD--VNDNAPKFELPDYQAHNVDED 337
Query: 399 AIPGTYIIKVVARSPSTYGNYVYTEVFLVSED 430
GT I++V A S G+ E +LVS+D
Sbjct: 338 IPLGTSILRVKAMD-SDSGSNAEIE-YLVSDD 367
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 88 GGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSS--N 145
G G + Y L+ D F I++++G + ++LDRE P Y L +A++ T
Sbjct: 31 GDGSLKYILSGDGAGD---LFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVE 87
Query: 146 PQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD---GSNGEL 202
P+S + I+I D+NDN P + ++ T V E VG+ + TATDADD G++ ++
Sbjct: 88 PESEFI---IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKV 144
Query: 203 RYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLT 261
Y +++ P +FSV+ TG + T L +D E + +V++ D + LS + T
Sbjct: 145 VYSILQGQP---YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMG-GLSGTTT 200
Query: 262 ARVVVKD 268
+ + D
Sbjct: 201 VNITLTD 207
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 436 YIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRET 495
++++ S YV ++ D +L Y++ A D+F I+ TG + + LDRE
Sbjct: 8 FLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE 67
Query: 496 VDQYNLVVHVTDSKSGD--YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHT 553
Y L + ++G + I I D+NDN P F + Y T+P E A+V T
Sbjct: 68 KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIF-TKDVYTATVP---EMADVGT 123
Query: 554 FI 555
F+
Sbjct: 124 FV 125
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 192 TDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAAN 251
+D D G +G L+Y ++ G+ F ++ TG + + LD E +IL QA N
Sbjct: 26 SDQDRG-DGSLKY-ILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRA----QAVN 79
Query: 252 ISERLSTSLTARVVVK--DLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDS-- 307
+ ++K D+NDN P+F + V E VG+ V ++TA D D
Sbjct: 80 RRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTAT--VPEMADVGTFVVQVTATDADDPT 137
Query: 308 -GDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHG 362
G++ +V Y I G F ++ + GI+ A + + +++ +++ V I A D G
Sbjct: 138 YGNSAKVVYSILQGQ--PYFSVESETGIIKTALLNMDRENREQYQVV--IQAKDMG 189
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 58/230 (25%)
Query: 304 DQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDH-- 361
DQD GD G + Y++SG F ++ + G + + + D + K +L A +
Sbjct: 27 DQDRGD-GSLKYILSGDGAGDLFIINENTGDIQATKRL---DREEKPVYILRAQAVNRRT 82
Query: 362 GIPPK-SSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS--TYGN 418
G P + S +I I ++ + P F Y A V E A GT++++V A TYGN
Sbjct: 83 GRPVEPESEFIIKI--HDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140
Query: 419 YVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKI 478
KVV Y++ P F +
Sbjct: 141 SA------------------KVV-------------------YSILQGQP------YFSV 157
Query: 479 DAETGVVTLA-RSLDRETVDQYNLVVHVTD---SKSGDYDTTNVFITILD 524
++ETG++ A ++DRE +QY +V+ D G TT V IT+ D
Sbjct: 158 ESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 87 AGGGHVMYSLTSLSPTDHSGA---FDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTS 143
+G G++ Y L+ GA F ID SG++ + LDRE +Y L +A+D T+
Sbjct: 31 SGDGNIKYILSG------EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 144 SNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD---GSNG 200
P +++ D+NDN P + V E + VG+++ TA+DADD G++
Sbjct: 85 -RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSA 143
Query: 201 ELRYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFILVVKVTDQAANISERLSTS 259
+L Y ++ P +FSV+ TG + T L +D E + +V++ D ++ T+
Sbjct: 144 KLVYSILEGQP---YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTT 200
Query: 260 LTARVVVKDLNDN 272
+ D D+
Sbjct: 201 KVTITLTDDYKDD 213
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 62/232 (26%)
Query: 304 DQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGI 363
D DSGD G + Y++SG F +D G + + + D + + + L A D
Sbjct: 28 DIDSGD-GNIKYILSGEGAGTIFVIDDKSGNIHATKTL---DREERAQYTLMAQAVDRDT 83
Query: 364 -----PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS--TY 416
PP S ++ + + ++ + P FL YHANV E + GT +I+V A TY
Sbjct: 84 NRPLEPP--SEFIVKV--QDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTY 139
Query: 417 GNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMF 476
GN L Y I G F
Sbjct: 140 GNSA-----------------------------------------KLVYSILEGQP--YF 156
Query: 477 KIDAETGVVTLAR-SLDRETVDQYNLVVHVTD---SKSGDYDTTNVFITILD 524
++A+TG++ A ++DRE ++Y++V+ D G TT V IT+ D
Sbjct: 157 SVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 196 DGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER 255
D +G ++Y ++ G F +D +G + + LD E + L+ + D+ N
Sbjct: 30 DSGDGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN--RP 86
Query: 256 LSTSLTARVVVKDLNDNAPVFVSPTRGSLIY---VSEQTRVGSHVTKMTAVDQDS---GD 309
L V V+D+NDN P F+ IY V E++ VG+ V ++TA D D G+
Sbjct: 87 LEPPSEFIVKVQDINDNPPEFLHE-----IYHANVPERSNVGTSVIQVTASDADDPTYGN 141
Query: 310 NGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHG 362
+ ++ Y I G F ++ GI+ A + D ++K + I A D G
Sbjct: 142 SAKLVYSILEGQ--PYFSVEAQTGIIRTA--LPNMDREAKEEYHVVIQAKDMG 190
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 462 NLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--YDTTNVF 519
N+ Y++ A +F ID ++G + ++LDRE QY L+ D + +
Sbjct: 35 NIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI 94
Query: 520 ITILDVNDNAPEFKSGSCYPITIPENS 546
+ + D+NDN PEF Y +PE S
Sbjct: 95 VKVQDINDNPPEFLH-EIYHANVPERS 120
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 11/113 (9%)
Query: 153 IKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIW-----NFTATDADDGSNGELRYGLV 207
++I + D NDN+P + VNE T VG+TI+ + ATD DDG NG++ Y ++
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEY-VI 171
Query: 208 RQYPE----GNHFSVD-HLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER 255
+ PE + F + LTG + L + L+YE T + ++++ D+A N++ER
Sbjct: 172 QYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNER 224
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 248 QAANISERLSTSL--TARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHV-----TKM 300
Q +++++ T + R+VV+D NDN+P F + + V+E T VG+ +
Sbjct: 97 QVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYAT--VNELTPVGTTIFTGFSGDN 154
Query: 301 TAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI--SEYDHQSKFRAVLNITA 358
A D D G NG++ YVI ED + + ++ V+ +++ K R + I A
Sbjct: 155 GATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQA 214
Query: 359 SDHG 362
+D
Sbjct: 215 NDRA 218
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 68 DVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRET 127
D P+ VG + S+ G + MY + S + F + G + +LDRE
Sbjct: 14 DSPLPHHVGKLTSS-----VGNKNAMYIIEGESA---NTIFKVQGYDGDIYAFERLDREK 65
Query: 128 CPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIW 187
EY+L +D + + + + I I++ D+NDNAP + + V E + +G+++
Sbjct: 66 KAEYELTAHIIDRRNNRSLEPPSKFI-IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVT 124
Query: 188 NFTATDADD---GSNGELRYGLVRQYPEGN-HFSVDHLTGTLTLLQPLDYETLTSFILVV 243
TA DADD + + Y +++ GN +F+VD T LD E+ +++ ++V
Sbjct: 125 KVTAEDADDPTVAGHATVTYQIIK----GNEYFTVDDSGVIFTARADLDRESQSAYEIIV 180
Query: 244 KVTDQAANISERLSTSLTARVVVK 267
K D E S TA V+++
Sbjct: 181 KAKDALGLTGE----SSTATVIIR 200
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 216 FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
F V G + + LD E + L + D+ N S + +V D+NDNAP+
Sbjct: 46 FKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKV--SDINDNAPI 103
Query: 276 FVSPT-RGSLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHD 331
FV GS V E +R+G+ VTK+TA D D + VTY I GNE F +D D
Sbjct: 104 FVQKIFNGS---VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVD-D 157
Query: 332 KGILSLARVISEYDHQSKFRAVL 354
G++ AR + + QS + ++
Sbjct: 158 SGVIFTARADLDRESQSAYEIIV 180
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 454 LISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD- 512
L S N Y+I A+ +FK+ G + LDRE +Y L H+ D ++
Sbjct: 24 LTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRS 83
Query: 513 -YDTTNVFITILDVNDNAPEFKSGSCYPITIPENS 546
+ I + D+NDNAP F + ++PE S
Sbjct: 84 LEPPSKFIIKVSDINDNAPIFVQ-KIFNGSVPEMS 117
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 115/317 (36%), Gaps = 60/317 (18%)
Query: 223 GTLTLLQPLDYETL---TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSP 279
G + + + DYE L + V +T+ N + + + ++VKD+ND P F++
Sbjct: 50 GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINR 109
Query: 280 TRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLAR 339
V + V + A D D+ N + Y I RF +D G++ R
Sbjct: 110 PLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVV---R 164
Query: 340 VISEYDHQSKFRAVLNITASDHGIP---PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
Q VL + A D + S LS P F PSY A +
Sbjct: 165 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP 224
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
E+ + II + A+S
Sbjct: 225 ENQKKDSDIISIKAKS-------------------------------------------- 240
Query: 457 DFSGYNLTYMIPA-GVADDMFKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGD 512
F+ + Y + A G F I +G+V LA+ LD E + Q Y+L+V T+ G
Sbjct: 241 -FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF 299
Query: 513 YDTTNVFITILDVNDNA 529
+ ++ I + DVNDNA
Sbjct: 300 STSVDLTIRVTDVNDNA 316
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 35/203 (17%)
Query: 93 MYSLTSLSP-TDHS-----------GAFDIDKSSGSLVVAR-----QLDRETCPEYKLEV 135
+++L + P TDH+ G F++D+ SG +V R QLD E Y L V
Sbjct: 127 VFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSG-VVRTRGTDLFQLDME----YVLYV 181
Query: 136 RALDTSTSSNPQ--SSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATD 193
+A D + + + S ++ IV AP++ + E+ S I + A
Sbjct: 182 KAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS 240
Query: 194 ADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS---FILVVKVTDQAA 250
D E+RY L Q F++ +G + L + LD+E L + L+V T+ +
Sbjct: 241 FADR---EIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG 297
Query: 251 NISERLSTSLTARVVVKDLNDNA 273
STS+ + V D+NDNA
Sbjct: 298 G----FSTSVDLTIRVTDVNDNA 316
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 91 HVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPE---YKLEVRALDTSTSSNPQ 147
+ Y+L + +G F+I +SG + +A++LD E + Y L V A + S
Sbjct: 245 EIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF--- 299
Query: 148 SSAVAIKIEIVDVNDNA 164
S++V + I + DVNDNA
Sbjct: 300 STSVDLTIRVTDVNDNA 316
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 270 NDNAPVFVSPTRGSLIY---VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR- 325
NDN+P F +Y ++E + G+ + ++ A D D G NG++ YV E R
Sbjct: 8 NDNSPRFEKS-----VYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRR 62
Query: 326 -FHLDHDKGILS-LARVISEYDHQSKFRAVLNITASDHGIPPKS--SSLVINILSE 377
LD G LS L R+ E +Q +F + A D G PPK+ +++V+NI E
Sbjct: 63 LLRLDETSGWLSVLHRIDREEVNQLRF----TVMARDRGQPPKTDKATVVLNIKDE 114
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGL------VRQYPEGN 214
NDN+PR+ ++ + E++ G+ I A D D G NG++ Y VR+
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRL---- 63
Query: 215 HFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAP 274
+D +G L++L +D E + V D+ + T + +KD NDN P
Sbjct: 64 -LRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPK---TDKATVVLNIKDENDNVP 119
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 110 IDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAP 165
+D++SG L V ++DRE + + V A D P++ + + I D NDN P
Sbjct: 66 LDETSGWLSVLHRIDREEVNQLRFTVMARDRGQP--PKTDKATVVLNIKDENDNVP 119
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--FSV 218
NDN P + E + + + E+ VG+++ ATDAD GSN E+RY Q F++
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 219 DHLTGTLTLLQPLDYE 234
++ TG +T+ + LD E
Sbjct: 68 NNTTGLITVQRSLDRE 83
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 270 NDNAPVFVSPTRGSL-IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR--- 325
NDN PVF G + +++ E VG+ V ++ A D D G N + Y+ A
Sbjct: 8 NDNRPVF---KEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRL 64
Query: 326 FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
F L++ G++++ R + D + + + ASD P +++ IN+
Sbjct: 65 FALNNTTGLITVQRSL---DREETAIHKVTVLASDGSSTPARATVTINV 110
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 459 SGYNLTYMIPAGVA---DDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDT 515
S + Y+ A VA +F ++ TG++T+ RSLDRE + + V +D S
Sbjct: 45 SNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARA 104
Query: 516 TNVFITILDVN 526
T V I + DVN
Sbjct: 105 T-VTINVTDVN 114
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 92
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSN 199
+ I I + D NDN P + + V E + G+++ +ATDADD N
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + + LDRE + +Y L H V+ + D + IT+ D N
Sbjct: 49 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 104
Query: 527 DNAPEF 532
DN PEF
Sbjct: 105 DNRPEF 110
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQ---YPEGNHFSVDHLTG 223
W P++ P NE G N ++ ++ Y + Q P F ++ TG
Sbjct: 4 WVIPPISCPENEK---GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 60
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RG 282
L + QPLD E + +IL + ++ E + + + V D NDN P F G
Sbjct: 61 WLKVTQPLDREAIAKYIL---YSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 117
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQD 306
S V+E G+ V K++A D D
Sbjct: 118 S---VAEGAVPGTSVMKVSATDAD 138
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 70 PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETC 128
P VG VV +D R+ + LT + G F I++++GS+ V R LDRE
Sbjct: 16 PFPRDVGKVVDSDRPERS-----KFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVI 70
Query: 129 PEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAP 165
Y+L V D + + V +++ ++D NDN P
Sbjct: 71 AVYQLFVETTDVNGKT--LEGPVPLEVIVIDQNDNRP 105
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVFITILDVNDNAP 530
+F+I+ TG V++ R+LDRE + Y L V TD + + + ++D NDN P
Sbjct: 49 IFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 171 PLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
P+ IP N+ + +D + S L V Q P+G F ++ TG++++ +
Sbjct: 6 PILIPENQRQPFPRDVGKVVDSDRPERSKFRLTGKGVDQEPKG-IFRINENTGSVSVTRT 64
Query: 231 LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAP 274
LD E + + L V+ TD L + V+V D NDN P
Sbjct: 65 LDREVIAVYQLFVETTDVNGKT---LEGPVPLEVIVIDQNDNRP 105
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 84 TGRAGGGHVMYSLTSLSPTDH-SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTST 142
+GR + YS+T +G F I+ SG L V + LDRE + L A+D
Sbjct: 28 SGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVD--I 85
Query: 143 SSNPQSSAVAIKIEIVDVNDNAPRW 167
+ N + + I I ++D+NDN P +
Sbjct: 86 NGNQVENPIDIVINVIDMNDNRPEF 110
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDT-TNVFITILDVNDNAPEF 532
+F I+ +G +++ + LDRE + +++L H D + ++ I ++D+NDN PEF
Sbjct: 52 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
++EDT VGS++ A D D N L +G V F+V+ TG + L QPLD ET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 236 LTSFILVVKVTDQAANISERLSTSL 260
+ F + V+D I+ +++ +
Sbjct: 76 KSEFTVEFSVSDHQGVITRKVNIQV 100
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
+ N+ + L+SED G+ + +++AR D L + + A
Sbjct: 9 FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRF 55
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSK 509
F ++ +TGVV L + LDRET ++ + V+D +
Sbjct: 56 FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 89
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 274 PVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKG 333
P F + + + +SE T VGS VT++ A D DN + + +SG F ++ D G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDM---DNDPLVFGVSGEEASRFFAVEPDTG 63
Query: 334 ILSLARVISEYDHQSKFRAVLNITASDH 361
++ L + + D ++K + + SDH
Sbjct: 64 VVWLRQPL---DRETKSEFTVEFSVSDH 88
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 171 PLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
P+ IP N+ ++ ++ +G+ L V Q P+G F ++ ++G +++ +P
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKG-IFRINEISGDVSVTRP 64
Query: 231 LDYETLTSFILVVKVTDQAANI 252
LD E + ++ L V+VTD + I
Sbjct: 65 LDREAIANYELEVEVTDLSGKI 86
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 70 PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCP 129
P +VG V+ ++ T G S + D G F I++ SG + V R LDRE
Sbjct: 16 PFPRSVGKVIRSEGTE---GAKFRLSGKGVD-QDPKGIFRINEISGDVSVTRPLDREAIA 71
Query: 130 EYKLEVRALDTS 141
Y+LEV D S
Sbjct: 72 NYELEVEVTDLS 83
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTD 507
+F+I+ +G V++ R LDRE + Y L V VTD
Sbjct: 49 IFRINEISGDVSVTRPLDREAIANYELEVEVTD 81
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 89 GGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQ 147
G + Y T T+ G F +K +G L V LDRE P + L ALD N
Sbjct: 43 GLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALD--ARGNNV 100
Query: 148 SSAVAIKIEIVDVNDNAP 165
+ ++I+++D+NDN P
Sbjct: 101 EKPLELRIKVLDINDNEP 118
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 216 FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
F + TG L + LD E F+L D N E+ L R+ V D+NDN PV
Sbjct: 63 FVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEK---PLELRIKVLDINDNEPV 119
Query: 276 F 276
F
Sbjct: 120 F 120
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 455 ISDFSGYNLTYMIPA-GVADDMFKI---DAETGVVTLARSLDRETVDQYNLVVHVTDSKS 510
+++ G +TY G+ + F I + +TG + + LDRE + L + D++
Sbjct: 38 LAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARG 97
Query: 511 GDYDT-TNVFITILDVNDNAPEF 532
+ + + I +LD+NDN P F
Sbjct: 98 NNVEKPLELRIKVLDINDNEPVF 120
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
P GV F I+ ETG + + LDRE + Y L H V+ + + D + IT+ D N
Sbjct: 51 PVGV----FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQN 106
Query: 527 DN 528
DN
Sbjct: 107 DN 108
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 90 GHVMYSLTSL-SPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQS 148
G V YS+T + T G F I++ +G L V LDRE Y L A+ S++ N
Sbjct: 36 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV--SSNGNAVE 93
Query: 149 SAVAIKIEIVDVNDN 163
+ I I + D NDN
Sbjct: 94 DPMEILITVTDQNDN 108
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE 126
+ +P VG VV +D R G + + + G F I+++SG + V + LDRE
Sbjct: 13 QRIPFPKIVGRVVVSD---RIPGSKIKLYGKGVD-QEPKGIFKINENSGEVSVTKALDRE 68
Query: 127 TCPEYKLEVRALD 139
P Y+L+V D
Sbjct: 69 AIPSYQLQVETTD 81
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTD 507
+FKI+ +G V++ ++LDRE + Y L V TD
Sbjct: 49 IFKINENSGEVSVTKALDREAIPSYQLQVETTD 81
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 170 NPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQ 229
+P+ IP N+ + +D +GS L V Q P+G F ++ TG++++ +
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGT-FRINENTGSVSVTR 64
Query: 230 PLDYETLTSFILVVKVTDQAANISE 254
LD ET+ ++ L V+ TD + E
Sbjct: 65 TLDRETIATYQLYVETTDASGKTLE 89
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 70 PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCP 129
P VG VV +D R G + + D G F I++++GS+ V R LDRET
Sbjct: 17 PFPRDVGKVVDSD---RPEGSKFRLTGKGVD-QDPKGTFRINENTGSVSVTRTLDRETIA 72
Query: 130 EYKLEVRALDTS 141
Y+L V D S
Sbjct: 73 TYQLYVETTDAS 84
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDS 508
F+I+ TG V++ R+LDRET+ Y L V TD+
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDA 83
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILD 524
P GV F I+ ETG + + LDRE + Y L H V+ + + D + IT+ D
Sbjct: 51 PVGV----FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 90 GHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQS 148
G V YS+T T G F I++ +G L V LDRE Y L A+ S++ N
Sbjct: 36 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV--SSNGNAVE 93
Query: 149 SAVAIKIEIVD 159
+ I I + D
Sbjct: 94 DPMEILITVTD 104
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 105
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILD 524
P GV F I+ ETG + + + LDRE + +Y L H V+ + + D + IT+ D
Sbjct: 51 PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGNAVEDPMEIVITVTD 104
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQ---YPEGNHFSVDHLTG 223
W P++ P NE G N ++ ++ Y + Q P F ++ TG
Sbjct: 6 WVIPPISCPENEK---GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 62
Query: 224 TLTLLQPLDYETLTSFIL 241
L + QPLD E + +IL
Sbjct: 63 WLKVTQPLDREAIAKYIL 80
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 91 HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
V YS+T G F I++ +G L V + LDRE +Y L A+ S++ N
Sbjct: 37 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGNAVED 94
Query: 150 AVAIKIEIVD 159
+ I I + D
Sbjct: 95 PMEIVITVTD 104
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 462 NLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD 507
N+ Y++ A +F ID ++G + ++LDRE QY L+ D
Sbjct: 35 NIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD 80
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 87 AGGGHVMYSLTSLSPTDHSGA---FDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTS 143
+G G++ Y L+ GA F ID SG++ + LDRE +Y L +A+D T+
Sbjct: 31 SGDGNIKYILSG------EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 88 GGGHVMYSLTSLSPTDHSG-AFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSS-- 144
G G + Y L+ + +G F ID ++G + ++LDRE +Y L +ALD T
Sbjct: 32 GDGSIKYILSG----EGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPM 87
Query: 145 NPQSSAVAIKIE 156
P+S + IKI+
Sbjct: 88 EPESEFI-IKIQ 98
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 448 YVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD 507
YV ++ D ++ Y++ A +F ID TG + + LDRE QY L D
Sbjct: 21 YVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALD 80
Query: 508 SKSG 511
++G
Sbjct: 81 RRTG 84
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILD 524
P GV F I+ ETG + + LDRE + Y L H V+ + + D + IT+ D
Sbjct: 48 PVGV----FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 101
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 90 GHVMYSLTSL-SPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQS 148
G V YS+T + T G F I++ +G L V LDRE Y L A+ S++ N
Sbjct: 33 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV--SSNGNAVE 90
Query: 149 SAVAIKIEIVD 159
+ I I + D
Sbjct: 91 DPMEILITVTD 101
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 90 GHVMYSLTSL-SPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKL 133
G V YS+T + T G F I++ +G L V LDRE Y L
Sbjct: 33 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTL 77
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITI 522
P GV F I+ ETG + + LDRE + Y L H V+ + + D + IT+
Sbjct: 48 PVGV----FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITV 99
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 266 VKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVIS--GGNED 323
VK + NA ++ P + + +Q + SH K VD+++ + G++ Y + G +
Sbjct: 370 VKYIRGNAGIYKLPREDNSL---KQGTLASHRCKALTVDREARNGGKLWYRLKNIGWTKA 426
Query: 324 ARFHLD------HDKGILSLARV 340
LD +DKG+ + ARV
Sbjct: 427 ENLSLDRYDKMEYDKGVTAYARV 449
>pdb|2Z3T|A Chain A, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|B Chain B, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|C Chain C, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|D Chain D, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3U|A Chain A, Crystal Structure Of Chromopyrrolic Acid Bound Cytochrome
P450 Stap (Cyp245a1)
pdb|3A1L|A Chain A, Crystal Structure Of 11,11'-Dichlorochromopyrrolic Acid
Bound Cytochrome P450 Stap (Cyp245a1)
Length = 425
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 207 VRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAAN--ISERLSTSLTARV 264
VR G+ SVD + GT L +ET T+F+ +T +A + E +T +
Sbjct: 230 VRARDTGSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTTPESTPA 289
Query: 265 VVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNED- 323
V++L P + TR + E R+G H D RV ++ N D
Sbjct: 290 AVEELMRYDPPVQAVTR----WAYEDIRLGDH---------DIPRGSRVVALLGSANRDP 336
Query: 324 ARF 326
ARF
Sbjct: 337 ARF 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,714,824
Number of Sequences: 62578
Number of extensions: 710026
Number of successful extensions: 1936
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1570
Number of HSP's gapped (non-prelim): 206
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)