RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8639
(570 letters)
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 292 bits (750), Expect = 4e-92
Identities = 134/522 (25%), Positives = 205/522 (39%), Gaps = 88/522 (16%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQ 122
+ E+ F +V S R + YS+T +G F I+ SG L V +
Sbjct: 8 NLPENSRGPF-PQELVRIRSD-RDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
LDRE + L A+D + N + + I I ++D+NDN P + V E +
Sbjct: 66 LDRELIARFHLRAHAVDING--NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 183 GSTIWNFTATDADD--GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYETL 236
G+ + TA DADD NG LRY ++ Q P N F++++ TG + T+ LD E +
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKV 183
Query: 237 TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSH 296
+ L+++ TD N + LS + TA + V D+NDN P F + T V E RV
Sbjct: 184 QQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG--EVPE-NRVDVI 240
Query: 297 VTKMTAVDQDSGDNG--RVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSKF 350
V +T D+D Y ISGG+ RF + D G++++ + I ++ F
Sbjct: 241 VANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPID-FETNRMF 299
Query: 351 RAVLNITASDHGI------PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
VL + A + P S+ +++ V+ + P F E GT
Sbjct: 300 --VLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTM 356
Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
+ + A+ P Y Y +SD + +
Sbjct: 357 LTTLTAQDPDRYMQ-------------------------QNIRYT----KLSDPANW--- 384
Query: 465 YMIPAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTD----SKSGDYDTT 516
KID G +T LDRE+ + YN +D SG T
Sbjct: 385 -----------LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSG---TG 430
Query: 517 NVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
+ I +LD+NDNAP+ E E N A D
Sbjct: 431 TLQIYLLDINDNAPQVLP---QEAETCETPE-PNSINITALD 468
Score = 240 bits (614), Expect = 3e-72
Identities = 101/493 (20%), Positives = 171/493 (34%), Gaps = 73/493 (14%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGG-GHVMYSLTSLSPTD-HSGAFDIDKSSGSLV-VA 120
+ E G V V + D+ G + Y + S +P+ F I+ +G ++ VA
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175
Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWGENPLTIPVNED 179
LDRE +Y L ++A D + S A I + DVNDN P + V E+
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN 235
Query: 180 TLVGSTIWNFTATDADDGSNGELR--YGLVRQYPEGNHFSV----DHLTGTLTLLQPLDY 233
V + N T TD D Y + P G F++ + G +T+++P+D+
Sbjct: 236 R-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTG-RFAILTDPNSNDGLVTVVKPIDF 293
Query: 234 ETLTSFILVVKVTDQA---ANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQ 290
ET F+L V +Q I ++ T V V D+N+N P F +I E
Sbjct: 294 ETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNP--KIIRQEEG 350
Query: 291 TRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI---SEYDHQ 347
G+ +T +TA D D + Y + +D G ++ V+ S
Sbjct: 351 LHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKN 409
Query: 348 SKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIK 407
+ + A ASD+GIPP S + + I ++ + P L E P + I
Sbjct: 410 NIYNAT--FLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAE--TCETPEPNSINIT 465
Query: 408 VVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMI 467
+ D P + +
Sbjct: 466 ALDY------------------DIDPNAGP-----------------------FAFDLPL 484
Query: 468 PAGVADDMFKIDAETG-VVTLARSLDRETVDQYNLVVHVTDSKSGD---YDTTNVFITIL 523
+ I+ G L + Y + + +TD SG+ + + + + +
Sbjct: 485 SPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITD--SGNPPKSNISILRVKVC 542
Query: 524 DVNDNAPEFKSGS 536
+ N
Sbjct: 543 QCDSNGDCTDVHH 555
Score = 195 bits (497), Expect = 2e-55
Identities = 88/418 (21%), Positives = 149/418 (35%), Gaps = 81/418 (19%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTG 223
W P+ +P N G +D N LRY + P F ++ ++G
Sbjct: 2 WVIPPINLPENSR---GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRG 282
L++ +PLD E + F L D ++ + + V D+NDN P F+ G
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVIDMNDNRPEFLHQVWNG 115
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDAR----FHLDHDKGILS 336
S V E ++ G++V +TA+D D + NG + Y I F ++++ G +
Sbjct: 116 S---VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII 172
Query: 337 LARVISEYDHQSKFRAVLNITASDHGIPPK---SSSLVINILSETVSTSLPTFLSPSYHA 393
V + D + + L I A+D P S++ I V+ + P F + +++
Sbjct: 173 T--VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG 230
Query: 394 NVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMY 453
V E+ + + D
Sbjct: 231 EVPENR-VDVIVANLTVTDK----------------D----------------------- 250
Query: 454 LISDFSGY-NLTYMIPAGVADDMFKI----DAETGVVTLARSLDRETVDQYNLVVHVTD- 507
+ N Y I G F I ++ G+VT+ + +D ET + L V +
Sbjct: 251 --QPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQ 308
Query: 508 ------SKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
+ T V +T++DVN+N P F I E A + T A D
Sbjct: 309 VPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNP-KIIRQEEGLHAGTMLTTLTAQD 364
Score = 190 bits (484), Expect = 1e-53
Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 36/347 (10%)
Query: 64 EIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS----GSLV 118
E+ E+ V N+ TD + Y ++ D +G F I G +
Sbjct: 231 EVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISG---GDPTGRFAILTDPNSNDGLVT 286
Query: 119 VARQLDRETCPEYKLEVRALD-----TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLT 173
V + +D ET + L V A + PQS+A + + ++DVN+N P + NP
Sbjct: 287 VVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTAT-VSVTVIDVNEN-PYFAPNPKI 344
Query: 174 IPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDY 233
I E G+ + TA D D +RY + N +D + G +T + LD
Sbjct: 345 IRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS--DPANWLKIDPVNGQITTIAVLDR 402
Query: 234 ETLT----SFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSE 289
E+ + +D +S + T ++ + D+NDNAP + E
Sbjct: 403 ESPNVKNNIYNATFLASDNG---IPPMSGTGTLQIYLLDINDNAPQVLPQE----AETCE 455
Query: 290 QTRVGSHVTKMTAVDQDSGDNG---RVTYVISGGNEDARFHLDHDKGILSLARVISEYDH 346
+TA+D D N +S + ++ G A++ +
Sbjct: 456 TPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNG--DFAQLNLKIKF 511
Query: 347 QSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHA 393
+ I +D G PPKS+ ++ + ++ +H
Sbjct: 512 LEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 268 bits (686), Expect = 9e-83
Identities = 125/523 (23%), Positives = 200/523 (38%), Gaps = 96/523 (18%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQ 122
E+ F N+V S R V YS+T G F I++ +G L V +
Sbjct: 8 SCPENEKGEF-PKNLVQIKSN-RDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
LDRE +Y L A+ ++ + I I + D NDN P + + V E +
Sbjct: 66 LDREAIAKYILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 183 GSTIWNFTATDADDG---SNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
G+++ +ATDADD N + Y +V Q PE N F+V+ TG + L LD E+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
++ LVV+ D E LST+ A + VKD+NDNAPVF T V E V +
Sbjct: 184 YPTYTLVVQAADLQ---GEGLSTTAKAVITVKDINDNAPVFNPST--YQGQVPE-NEVNA 237
Query: 296 HVTKMTAVDQDSGDNG--RVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSK 349
+ + D D+ + + Y + + +F + D GIL A+ + ++ + +
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQ-QFVVVTDPTTNDGILKTAKGLD-FEAKQQ 295
Query: 350 FRAVLNITASDHGI---PPKSSSLVINILSETVSTS--LPTFLSPSYHANVSEDAIPGTY 404
+ +L++ + S+ + + V P F+ V ED G
Sbjct: 296 Y--ILHVRVENEEPFEGSLVPSTATVTV---DVVDVNEAPIFMPAERRVEVPEDFGVGQE 350
Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
I AR P T+ + TY + D + +
Sbjct: 351 ITSYTAREPDTFMD-------------------------QKITYR----IWRDTANW--- 378
Query: 465 YMIPAGVADDMFKIDAETGVVTLARSLDRETV-----DQYNLVVHVTD----SKSGDYDT 515
+I+ ETG + +DRE Y ++ TD +G T
Sbjct: 379 -----------LEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATG---T 424
Query: 516 TNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
+ + +LDVNDNAP + + + H D
Sbjct: 425 GTLLLVLLDVNDNAPIPEP---RNMQFCQR--NPQPHIITILD 462
Score = 233 bits (596), Expect = 1e-69
Identities = 87/485 (17%), Positives = 168/485 (34%), Gaps = 71/485 (14%)
Query: 64 EIKEDVPIGFTVGNVVSTDS-TGRAGG-GHVMYSLTSLSPTD-HSGAFDIDKSSGSLVVA 120
+ E G +V V +TD+ + Y++ S P H F +++ +G + V
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 121 -RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNED 179
LDRE+ P Y L V+A D S+ I + D+NDNAP + + V E+
Sbjct: 176 TSGLDRESYPTYTLVVQAADLQG--EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN 233
Query: 180 TLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV----DHLTGTLTLLQPLDYET 235
V + I TD D + + F V G L + LD+E
Sbjct: 234 E-VNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEA 292
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
+IL V+V ++ + ++ T V V D+N+ AP+F+ + V E VG
Sbjct: 293 KQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAE--RRVEVPEDFGVGQ 349
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI----SEYDHQSKFR 351
+T TA + D+ + ++TY I + ++ + G + + +E+ S +
Sbjct: 350 EITSYTAREPDTFMDQKITYRI-WRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYV 408
Query: 352 AVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVAR 411
A+ I A+D G P + + + ++ V+ + P + + +
Sbjct: 409 AL--IIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ--FCQRNPQPH---IITIL 461
Query: 412 SPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGV 471
P N T + G
Sbjct: 462 DPDLPPN-----------------------------------------TSPFTAELTHGA 480
Query: 472 ADD-MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNA 529
+ + + + + + + +Y + + + D + + T + + + D
Sbjct: 481 SVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLAD--NQNKDQVTTLDVHVCDCEGTV 538
Query: 530 PEFKS 534
Sbjct: 539 NNCMK 543
Score = 191 bits (487), Expect = 5e-54
Identities = 89/412 (21%), Positives = 147/412 (35%), Gaps = 75/412 (18%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTG 223
W P++ P NE G N ++ ++ Y + Q P F ++ TG
Sbjct: 2 WVIPPISCPENEK---GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRG 282
L + QPLD E + +IL E + + + V D NDN P F G
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSN---GEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDSG---DNGRVTYVISGGNEDAR----FHLDHDKGIL 335
S V+E G+ V K++A D D N + Y I + + F ++ D G++
Sbjct: 116 S---VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVI 172
Query: 336 SLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANV 395
S+ + + + L + A+D S++ I + ++ + P F +Y V
Sbjct: 173 SVLTSGLDRESYPTYT--LVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 396 SEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLI 455
E+ I + D P T K V Y +
Sbjct: 231 PENE-VNARIATLKVTDD----------------D-APNTPAWKAV-----------YTV 261
Query: 456 SDFSGYNLTYMIPAGVADDMFKI--DAET--GVVTLARSLDRETVDQYNLVVHVTD---- 507
D F + D T G++ A+ LD E QY L V V +
Sbjct: 262 V-------------NDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPF 308
Query: 508 SKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
S T V + ++DVN+ AP F + +PE+ + ++ A +
Sbjct: 309 EGSLVPSTATVTVDVVDVNE-APIFMPAE-RRVEVPEDFGVGQEITSYTARE 358
Score = 189 bits (483), Expect = 2e-53
Identities = 59/346 (17%), Positives = 135/346 (39%), Gaps = 36/346 (10%)
Query: 62 NNEIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS----GS 116
++ E+ + + TD +Y++ + D F + G
Sbjct: 227 QGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVN----DPDQQFVVVTDPTTNDGI 281
Query: 117 LVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWGENPLTIP 175
L A+ LD E +Y L VR + + A + +++VDVN+ AP + +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVE 340
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
V ED VG I ++TA + D + ++ Y + R N ++ TG + +D E
Sbjct: 341 VPEDFGVGQEITSYTAREPDTFMDQKITYRIWR--DTANWLEINPETGAIFTRAEMDRED 398
Query: 236 L-----TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQ 290
++++ ++ TD S + + T +V+ D+NDNAP+ + ++
Sbjct: 399 AEHVKNSTYVALIIATDDG---SPIATGTGTLLLVLLDVNDNAPIPEPRN----MQFCQR 451
Query: 291 TRVGSHVTKMTAVDQDSGDNG-RVTYVISGGN-EDARFHLDHDKGILSLARVISEYDHQS 348
+ T +D D N T ++ G + + + + + +
Sbjct: 452 NPQPHII---TILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLE-IG 507
Query: 349 KFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHAN 394
+++ +++ +D+ + ++L +++ ++ + +H +
Sbjct: 508 EYK--IHLKLADNQNKDQVTTLDVHVCD--CEGTVNNCMKAHHHHH 549
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 262 bits (672), Expect = 9e-81
Identities = 123/519 (23%), Positives = 205/519 (39%), Gaps = 91/519 (17%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQ 122
E P + + S V YS+T + G F I+ +G ++V R
Sbjct: 16 SENERGPFPKRLVQIKSNK----DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 71
Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
LDRE +Y L A+ + +P + I I ++D NDN P++ ++ V E
Sbjct: 72 LDREEYDKYVLSSHAVSENG--SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQP 129
Query: 183 GSTIWNFTATDADD---GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
G+ + +ATD DD NG L Y +++Q PE N F+++ TG + + LD E
Sbjct: 130 GTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK 189
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
+ L V+ TD LS A + + D NDNAP+F T V E +G
Sbjct: 190 FPEYTLTVQATDLE---GAGLSVEGKAIIQITDANDNAPIFDPKT--YTALVPE-NEIGF 243
Query: 296 HVTKMTAVDQDS-GDNGRVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSKF 350
V +++ D D G NE F++ D GIL+ A+ + ++ + ++
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLD-FELRKQY 302
Query: 351 RAVLNITASD---HGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIK 407
L IT + +P +S+ + + E V+ + P F+ +VSED G II
Sbjct: 303 V--LQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIIS 359
Query: 408 VVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMI 467
+VA+ P +Y + +D + +
Sbjct: 360 LVAQDPDKQQI-------------------------QKLSYF----IGNDPARW------ 384
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDS----KSGDYDTTNVF 519
++ + G+VT +LDRE+ + Y +++ VTD +G T +
Sbjct: 385 --------LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTG---TGTLI 433
Query: 520 ITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
+ +LDVNDN P P + +D
Sbjct: 434 LHVLDVNDNGPVP-----SPRVFTMCDQNPEPQVLTISD 467
Score = 233 bits (597), Expect = 8e-70
Identities = 93/481 (19%), Positives = 167/481 (34%), Gaps = 67/481 (13%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGH--VMYSLTSLSPTD-HSGAFDIDKSSGSLVVA 120
++E V G V V +TD + + YS+ P + F I++ +G + +
Sbjct: 122 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 181
Query: 121 RQ-LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNED 179
LDRE PEY L V+A D S I+I D NDNAP + T V E+
Sbjct: 182 GTGLDREKFPEYTLTVQATDLEG--AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN 239
Query: 180 TLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHF----SVDHLTGTLTLLQPLDYET 235
+G + + TD D + + EG F + G LT + LD+E
Sbjct: 240 E-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFEL 298
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
++L + V + +++ T V V+D+N+ P FV S + VSE G
Sbjct: 299 RKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAV--SRVDVSEDLSRGE 355
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI---SEYDHQSKFRA 352
+ + A D D +++Y I G + ++ D GI++ + SEY + +
Sbjct: 356 KIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTV 414
Query: 353 VLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARS 412
+ + +D G+ + + + + V+ + P + P ++ +
Sbjct: 415 I--MLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN---PEPQVLTISDA- 468
Query: 413 PSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVA 472
D + Y + G
Sbjct: 469 -----------------D-------------------------IPPNTYPYKVSLSHGSD 486
Query: 473 DDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEF 532
G L + Y++ V ++D+ + T V T+ A +
Sbjct: 487 LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA-QNNPQLTVVNATVCSCEGKAIKC 545
Query: 533 K 533
+
Sbjct: 546 Q 546
Score = 200 bits (511), Expect = 2e-57
Identities = 81/418 (19%), Positives = 146/418 (34%), Gaps = 81/418 (19%)
Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGL----VRQYPEGNHFSVD 219
W P+ + NE + ++ ++ Y + P+G F ++
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRL---VQIKSNKDRFNKVYYSITGQGADNPPQG-VFRIE 60
Query: 220 HLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-S 278
TG + + +PLD E ++L + + + + V D NDN P F
Sbjct: 61 WETGWMLVTRPLDREEYDKYVLSSHAVSEN---GSPVEEPMEITINVIDQNDNRPKFTQD 117
Query: 279 PTRGSLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDAR----FHLDHD 331
RGS V E + G+ V ++A D+D NG ++Y I + + F ++ +
Sbjct: 118 VFRGS---VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRE 174
Query: 332 KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSS--LVINILSETVSTSLPTFLSP 389
G++SL + + ++ L + A+D S +I I + + P F
Sbjct: 175 TGVISLIGTGLDREKFPEYT--LTVQATDLEGAGLSVEGKAIIQITD--ANDNAPIFDPK 230
Query: 390 SYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYV 449
+Y A V E+ G + ++ G A Y I+
Sbjct: 231 TYTALVPENE-IGFEVQRLSVTDLDMPGT-----------PAWQAVYKIR---------- 268
Query: 450 YHMYLISDFSGYNLTYMIPAGVADDMFKI----DAETGVVTLARSLDRETVDQYNLVVHV 505
F I ++ G++T A+ LD E QY L + V
Sbjct: 269 --------------------VNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITV 308
Query: 506 TD----SKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
+ S T V +T+ DVN+ P F + + E+ + + +A D
Sbjct: 309 ENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAV-SRVDVSEDLSRGEKIISLVAQD 364
Score = 180 bits (460), Expect = 3e-50
Identities = 64/323 (19%), Positives = 114/323 (35%), Gaps = 30/323 (9%)
Query: 62 NNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKS----SGSL 117
+ E+ IGF V + TD + + G F+I G L
Sbjct: 233 TALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQGIL 288
Query: 118 VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWGENPLTIPV 176
A+ LD E +Y L++ + S P ++ A + + + DVN+ P + + V
Sbjct: 289 TTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDV 347
Query: 177 NEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET- 235
+ED G I + A D D +L Y + +V+ G +T LD E+
Sbjct: 348 SEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN--DPARWLTVNKDNGIVTGNGNLDRESE 405
Query: 236 ---LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTR 292
++ +++ VTD + + T + V D+NDN PV +
Sbjct: 406 YVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLDVNDNGPVPSPR---VFTMCDQ--- 456
Query: 293 VGSHVTKMTAVDQDSGDNG-RVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFR 351
+T D D N +S G++ KG L + + +
Sbjct: 457 -NPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLK-KGDYS 514
Query: 352 AVLNITASDHGIPPKSSSLVINI 374
+ + SD P+ + + +
Sbjct: 515 --IYVLLSDAQNNPQLTVVNATV 535
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 269 bits (690), Expect = 1e-80
Identities = 124/517 (23%), Positives = 207/517 (40%), Gaps = 93/517 (17%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDR 125
E P + + S V YS+T + G F I+ +G ++V R LDR
Sbjct: 168 ERGPFPKRLVQIKSNK----DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDR 223
Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGST 185
E +Y L A+ + +P + I I ++D NDN P++ ++ V E G+
Sbjct: 224 EEYDKYVLSSHAVSENG--SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQ 281
Query: 186 IWNFTATDADD---GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYETLTS 238
+ +ATD DD NG L Y +++Q PE N F+++ TG + + LD E
Sbjct: 282 VMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE 341
Query: 239 FILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVT 298
+ L V+ TD LS A + + D NDNAP+F T V E +G V
Sbjct: 342 YTLTVQATDLE---GAGLSVEGKAIIQITDANDNAPIFDPKT--YTALVPE-NEIGFEVQ 395
Query: 299 KMTAVDQDSGDNG--RVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSKFRA 352
+++ D D + Y I NE F++ D GIL+ A+ + ++ + ++
Sbjct: 396 RLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNITTDPESNQGILTTAKGLD-FELRKQY-- 451
Query: 353 VLNITASD---HGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVV 409
VL IT + +P +S+ + + E V+ + P F+ +VSED G II +V
Sbjct: 452 VLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLV 510
Query: 410 ARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPA 469
A+ P Y + +D + +
Sbjct: 511 AQDPDKQQI---------------------------QKLSYF--IGNDPARW-------- 533
Query: 470 GVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDS----KSGDYDTTNVFIT 521
++ + G+VT +LDRE+ + Y +++ VTD +G T + +
Sbjct: 534 ------LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTG---TGTLILH 584
Query: 522 ILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
+LDVNDN P + + +D
Sbjct: 585 VLDVNDNGPVPSPRV-FTMCDQNPE----PQVLTISD 616
Score = 232 bits (594), Expect = 4e-67
Identities = 91/523 (17%), Positives = 170/523 (32%), Gaps = 89/523 (17%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPT-DHSG----AFDIDKSSGSL-VVA 120
++ G +G V +D T H +Y + G + + ++
Sbjct: 49 RELERGRKLGKVNFSDCTT---RKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTIS 105
Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR-----WGENPLTIP 175
R + V + + S + + + + W P+ +
Sbjct: 106 TWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVS 165
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQ---YPEGNHFSVDHLTGTLTLLQPLD 232
NE + ++ ++ Y + Q P F ++ TG + + +PLD
Sbjct: 166 ENERGPFPKRL---VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLD 222
Query: 233 YETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRGSLIYVSEQT 291
E ++L + + + + V D NDN P F RGS V E
Sbjct: 223 REEYDKYVLSSHAVSEN---GSPVEEPMEITINVIDQNDNRPKFTQDVFRGS---VREGV 276
Query: 292 RVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDAR----FHLDHDKGILSLARVISEY 344
+ G+ V ++A D+D NG ++Y I + + F ++ + G++SL +
Sbjct: 277 QPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336
Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
+ ++ L + A+D S I + + P F +Y A V E+ G
Sbjct: 337 EKFPEYT--LTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFE 393
Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
+ ++ G A Y I+
Sbjct: 394 VQRLSVTDLDMPGT-----------PAWQAVYKIR------------------------- 417
Query: 465 YMIPAGVADDMFKIDAE----TGVVTLARSLDRETVDQYNLVVHVTD----SKSGDYDTT 516
F I + G++T A+ LD E QY L + V + S T
Sbjct: 418 -----VNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTA 472
Query: 517 NVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
V +T+ DVN+ P F + + E+ + + +A D
Sbjct: 473 TVTVTVEDVNEA-PFFVPAV-SRVDVSEDLSRGEKIISLVAQD 513
Score = 229 bits (585), Expect = 9e-66
Identities = 95/480 (19%), Positives = 168/480 (35%), Gaps = 67/480 (13%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTD-HSGAFDIDKSSGSLVVA 120
++E V G V V +TD G + YS+ P + F I++ +G + +
Sbjct: 271 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 330
Query: 121 RQ-LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNED 179
LDRE PEY L V+A D S I+I D NDNAP + T V E+
Sbjct: 331 GTGLDREKFPEYTLTVQATD--LEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN 388
Query: 180 TLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV----DHLTGTLTLLQPLDYET 235
+G + + TD D + + EG F++ + G LT + LD+E
Sbjct: 389 E-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFEL 447
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
++L + V + +++ T V V+D+N+ P FV S + VSE G
Sbjct: 448 RKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAV--SRVDVSEDLSRGE 504
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI---SEYDHQSKFRA 352
+ + A D D +++Y I G + ++ D GI++ + SEY + +
Sbjct: 505 KIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTV 563
Query: 353 VLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARS 412
+ + +D G+ + + + + V+ + P + P ++ +
Sbjct: 564 I--MLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN---PEPQVLTISDA- 617
Query: 413 PSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVA 472
D P Y + G
Sbjct: 618 -----------------DIPPN-------------------------TYPYKVSLSHGSD 635
Query: 473 DDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEF 532
G L + Y++ V ++D+ + T V T+ A +
Sbjct: 636 LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA-QNNPQLTVVNATVCSCEGKAIKC 694
Score = 206 bits (526), Expect = 9e-58
Identities = 86/427 (20%), Positives = 142/427 (33%), Gaps = 69/427 (16%)
Query: 153 IKIEIVDVNDNAPRWGENPLTIPVNEDTL-VGSTIWNFTATDADDGSNGELRYGLVRQYP 211
+ DV+ P + VN L G + +D +G G
Sbjct: 23 VPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG------ 76
Query: 212 EGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQ-----------AANISERLSTSL 260
+ F V GT+ + + + T F + + S + S
Sbjct: 77 -DSRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSR 134
Query: 261 TARVVVKDLNDNAPVFVSPTRG---SLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVI 317
++++ V + R I VSE R G ++ + + +V Y I
Sbjct: 135 SSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSI 193
Query: 318 SGGNEDAR----FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVIN 373
+G D F ++ + G + + R + + + K+ L+ A P + I
Sbjct: 194 TGQGADNPPQGVFRIEWETGWMLVTRPL-DREEYDKYV--LSSHAVSENGSPVEEPMEIT 250
Query: 374 ILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIP 433
I + + P F + +V E PGT ++ V A ED
Sbjct: 251 INVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSA----------------TDEDDNI 294
Query: 434 GTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARS-LD 492
+ + Y++ P ++F I+ ETGV++L + LD
Sbjct: 295 DSLNGVLS-------------------YSILKQDPEEPIPNLFTINRETGVISLIGTGLD 335
Query: 493 RETVDQYNLVVHVTDSKS-GDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANV 551
RE +Y L V TD + G I I D NDNAP F + Y +PEN V
Sbjct: 336 REKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKT-YTALVPENEIGFEV 394
Query: 552 HTFIATD 558
TD
Sbjct: 395 QRLSVTD 401
Score = 181 bits (460), Expect = 7e-49
Identities = 66/357 (18%), Positives = 119/357 (33%), Gaps = 34/357 (9%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKS 113
F + E+ IGF V + TD +Y + + G F+I
Sbjct: 375 IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV----NEGGFFNITTD 429
Query: 114 S----GSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWG 168
G L A+ LD E +Y L++ + S P ++ A + + + DVN+ P +
Sbjct: 430 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFV 488
Query: 169 ENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLL 228
+ V+ED G I + A D D +L Y + +V+ G +T
Sbjct: 489 PAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN--DPARWLTVNKDNGIVTGN 546
Query: 229 QPLDYET----LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSL 284
LD E+ ++ +++ VTD + + T + V D+NDN PV
Sbjct: 547 GNLDRESEYVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLDVNDNGPVPSPRVF--T 601
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNG-RVTYVISGGNEDARFHLDHDKGILSLARVISE 343
+ +T D D N +S G++ KG L +
Sbjct: 602 MCDQNPE-----PQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQ 656
Query: 344 YDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
+ + + + SD P+ + + + + +
Sbjct: 657 LK-KGDYS--IYVLLSDAQNNPQLTVVNATV--CSCEGKAIKCQEKLVGGFDLPIIL 708
Score = 125 bits (316), Expect = 2e-30
Identities = 49/316 (15%), Positives = 92/316 (29%), Gaps = 56/316 (17%)
Query: 256 LSTSLTARVVVKDLNDNAPVFVSPT-RGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVT 314
L + D++ P F S S+ + G + K+ D + +G
Sbjct: 17 LCLLQVVPSINADVSGCKPGFSSAEYIFSV--NRRELERGRKLGKVNFSDCTTRKHGLYD 74
Query: 315 Y------VISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSS 368
V+ G + H+ K + + G S
Sbjct: 75 VGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSR 134
Query: 369 SLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVS 428
S + +L+ + + + + +
Sbjct: 135 SSKLPVLTFPETHTGLKRKKRDWVIPPIK---------------------------VSEN 167
Query: 429 EDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVAD----DMFKIDAETGV 484
E ++++ + + Y I AD +F+I+ ETG
Sbjct: 168 ERGPFPKRLVQIKSNKDR-------------FNKVYYSITGQGADNPPQGVFRIEWETGW 214
Query: 485 VTLARSLDRETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNAPEFKSGSCYPITIP 543
+ + R LDRE D+Y L H + + I ++D NDN P+F + ++
Sbjct: 215 MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV-FRGSVR 273
Query: 544 ENSEA-ANVHTFIATD 558
E + V ATD
Sbjct: 274 EGVQPGTQVMAVSATD 289
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 216 bits (552), Expect = 7e-66
Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 23/314 (7%)
Query: 65 IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
++E + + TD G + Y L+ F I+ +G + ++LD
Sbjct: 10 LEEFSGPEPILVGRLHTDLD--PGSKKIKYILSG---DGAGTIFQINDITGDIHAIKRLD 64
Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
RE EY L +A+D T+ P I++ D+NDNAP + P V E +++G+
Sbjct: 65 REEKAEYTLTAQAVDFETN-KPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGT 123
Query: 185 TIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFI 240
++ N TATDADD G++ +L Y ++ P +FS++ T + T L +D E ++
Sbjct: 124 SVTNVTATDADDPVYGNSAKLVYSILEGQP---YFSIEPETAIIKTALPNMDREAKEEYL 180
Query: 241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKM 300
+V++ D S LS + T V + D+NDN P F V E +G+ + ++
Sbjct: 181 VVIQAKDM-GGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL--YHFSVPEDVVLGTAIGRV 237
Query: 301 TAVDQDSGDNGRVTYVISGGNEDARFHL----DHDKGILSLARVISEYDHQSKFRAVLNI 356
A DQD G+N + +Y I G+ A F + G++ L + D ++K L +
Sbjct: 238 KANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRK---PLDFETKKSYTLKV 294
Query: 357 TASDHGIPPKSSSL 370
A++ I P+ SS
Sbjct: 295 EAANIHIDPRFSSR 308
Score = 158 bits (402), Expect = 4e-44
Identities = 84/363 (23%), Positives = 135/363 (37%), Gaps = 82/363 (22%)
Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTG 223
+ W N + + + E + + TD D G + +++Y L G F ++ +TG
Sbjct: 1 SWVW--NQMFV-LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGD-GAGTIFQINDITG 55
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF-VSPTRG 282
+ ++ LD E + L + D N + L + V+D+NDNAP F P
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETN--KPLEPPSEFIIKVQDINDNAPEFLNGPYHA 113
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLAR 339
+ V E + +G+ VT +TA D D G++ ++ Y I G F ++ + I+ A
Sbjct: 114 T---VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY--FSIEPETAIIKTAL 168
Query: 340 ------VISEYDHQSKFRAVLNITASDHG--IPPKSSSLVINILSETVSTSLPTFLSPSY 391
EY + I A D G S + + + V+ + P F Y
Sbjct: 169 PNMDREAKEEYL--------VVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLY 220
Query: 392 HANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH 451
H +V ED + GT I +V A D
Sbjct: 221 HFSVPEDVVLGTAIGRVKANDQ----------------D--------------------- 243
Query: 452 MYLISDFSGYN--LTYMIPAGVADDMFKI----DAETGVVTLARSLDRETVDQYNLVVHV 505
G N +Y I G +F+I A+ GV+ L + LD ET Y L V
Sbjct: 244 -------IGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296
Query: 506 TDS 508
+
Sbjct: 297 ANI 299
Score = 144 bits (365), Expect = 6e-39
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 11/212 (5%)
Query: 62 NNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDKSSGSL-V 118
+ + E +G +V NV +TD+ G ++YS+ P F I+ + +
Sbjct: 112 HATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY-----FSIEPETAIIKT 166
Query: 119 VARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNE 178
+DRE EY + ++A D S S + + + DVNDN P++ ++ V E
Sbjct: 167 ALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPE 226
Query: 179 DTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN---HFSVDHLTGTLTLLQPLDYET 235
D ++G+ I A D D G N + Y ++ G + L +PLD+ET
Sbjct: 227 DVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFET 286
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVK 267
S+ L V+ + + VK
Sbjct: 287 KKSYTLKVEAANIHIDPRFSSRGPFKDTATVK 318
Score = 137 bits (348), Expect = 2e-36
Identities = 60/294 (20%), Positives = 107/294 (36%), Gaps = 61/294 (20%)
Query: 273 APVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK 332
+ V+ + + E + + D D G + ++ Y++SG F ++
Sbjct: 1 SWVW-NQM----FVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDIT 54
Query: 333 GILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSY 391
G + + + + + ++++ L A D P I + ++ + P FL+ Y
Sbjct: 55 GDIHAIKRL-DREEKAEYT--LTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPY 111
Query: 392 HANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH 451
HA V E +I GT + V A D
Sbjct: 112 HATVPEMSILGTSVTNVTATDA----------------D--------------------- 134
Query: 452 MYLISDFSGYN--LTYMIPAGVADDMFKIDAETGVV-TLARSLDRETVDQYNLVVHVTDS 508
G + L Y I G F I+ ET ++ T ++DRE ++Y +V+ D
Sbjct: 135 ----DPVYGNSAKLVYSILEG--QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDM 188
Query: 509 KSGDY---DTTNVFITILDVNDNAPEFKSGSCYPITIPENSE-AANVHTFIATD 558
TT + +T+ DVNDN P+F Y ++PE+ + A D
Sbjct: 189 GGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL-YHFSVPEDVVLGTAIGRVKAND 241
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 208 bits (531), Expect = 1e-61
Identities = 87/455 (19%), Positives = 162/455 (35%), Gaps = 81/455 (17%)
Query: 90 GHVMYSLTSLSPTDH-----SGAFDIDKSSGSLVVARQLDRETCPE---YKLEVRALDTS 141
G ++ L + + + +++G++ V ++ D E V +
Sbjct: 25 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84
Query: 142 TSSNPQ-SSAVAIKIEIVDVNDNAPRWGENPLT--IPVNEDTLVGSTIWNFTATDADDGS 198
++ + + + I + DVND P + PL V + + ++ A D D
Sbjct: 85 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 144
Query: 199 NGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLST 258
N Y +VR G F VD +G + ++ ++L VK DQ + +R
Sbjct: 145 NIH--YFIVRD-RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQ 201
Query: 259 SLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTY-VI 317
S + AP F P+ + E + S + + A + + Y +
Sbjct: 202 STPEERLSIVGGKRAPQFYMPS--YEAEIPENQKKDSDIISIKAKS---FADREIRYTLK 256
Query: 318 SGGNEDARFHLDHDKGILSLARVISEYDHQSKFRA-VLNITASDHGIPPKSSSLVINILS 376
+ G F++ GI+ LA+ + +++ + L +TA++ S+S+ + I
Sbjct: 257 AQGQGAGTFNIGPTSGIVKLAKEL-DFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRV 314
Query: 377 ETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTY 436
V+ + P F P Y + V ED GT
Sbjct: 315 TDVNDNAPKFELPDY-------------------------------QAHNVDEDIPLGTS 343
Query: 437 IIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLARSLDRE 494
I++V A D SG N + Y++ +DD F +D G++ + LD +
Sbjct: 344 ILRVKAMDS-----------D-SGSNAEIEYLV----SDDHFAVD-SNGIIVNNKQLDAD 386
Query: 495 TV-DQYNLVVHVTDS----KSGDYDTTNVFITILD 524
Y +V D KSG V + +
Sbjct: 387 NNNAYYEFIVTAKDKGEPPKSG---VATVRVYTKN 418
Score = 207 bits (528), Expect = 3e-61
Identities = 82/401 (20%), Positives = 137/401 (34%), Gaps = 71/401 (17%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYP-------EGNHFSVDHLTGTLTLL 228
V T+AD + G+ + L ++ + N + G + +
Sbjct: 4 VTRAVRPTKR---IEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 229 QPLDYETL---TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLI 285
+ DYE L + V +T+ N + + + ++VKD+ND P F++
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 286 YVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYD 345
V + V + A D D+ N + Y I RF +D G++
Sbjct: 121 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTD---L 175
Query: 346 HQSKFRAVLNITASDHGIPP---KSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPG 402
Q VL + A D + S LS P F PSY A + E+
Sbjct: 176 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD 235
Query: 403 TYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN 462
+ II + A+S
Sbjct: 236 SDIISIKAKSF-------------------------------------------ADRE-- 250
Query: 463 LTYMIPAGVADDM-FKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGDYDTTNV 518
+ Y + A F I +G+V LA+ LD E + Q Y+L+V T+ G + ++
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 310
Query: 519 FITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
I + DVNDNAP+F+ + E+ ++ A D
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMD 351
Score = 204 bits (520), Expect = 4e-60
Identities = 73/316 (23%), Positives = 131/316 (41%), Gaps = 27/316 (8%)
Query: 65 IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
++ + P V + + D ++ Y + G F++D+ SG +
Sbjct: 122 VQLNAPPNTPVFTLQARD---PDTDHNIHYFIVR---DRTGGRFEVDERSGVVRTRGTDL 175
Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEI-VDVNDNAPRWGENPLTIPVNEDTLVG 183
+ EY L V+A D + + + + + + AP++ + E+
Sbjct: 176 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD 235
Query: 184 STIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS---FI 240
S I + A + E+RY L Q F++ +G + L + LD+E L +
Sbjct: 236 SDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYS 292
Query: 241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKM 300
L+V T+ S STS+ + V D+NDNAP F P V E +G+ + ++
Sbjct: 293 LIVTATED----SGGFSTSVDLTIRVTDVNDNAPKFELPDY-QAHNVDEDIPLGTSILRV 347
Query: 301 TAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDH-QSKFRAVLNITAS 359
A+D DSG N + Y++S + F +D + GI+ + + D + +TA
Sbjct: 348 KAMDSDSGSNAEIEYLVSDDH----FAVDSN-GIIVNNKQL---DADNNNAYYEFIVTAK 399
Query: 360 DHGIPPKSSSLVINIL 375
D G PPKS + +
Sbjct: 400 DKGEPPKSGVATVRVY 415
Score = 140 bits (356), Expect = 7e-37
Identities = 47/294 (15%), Positives = 91/294 (30%), Gaps = 68/294 (23%)
Query: 287 VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK--------GILSLA 338
V+ R + + D G+ + + + F + D G + +
Sbjct: 4 VTRAVRPTKRIE---FTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 339 RVI---SEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSP--SYHA 393
+ ++ V+ + + + + IL + V+ P F++ A
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 394 NVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMY 453
V +A P T + + AR P
Sbjct: 121 VVQLNAPPNTPVFTLQARDP---------------------------------------- 140
Query: 454 LISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD-----S 508
D + +N+ Y I F++D +GVV + + +Y L V D
Sbjct: 141 ---D-TDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVD 196
Query: 509 KSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATDFGN 561
T ++I+ AP+F S Y IPEN + +++ + A F +
Sbjct: 197 DRRFQSTPEERLSIVG-GKRAPQFYMPS-YEAEIPENQKKDSDIISIKAKSFAD 248
Score = 139 bits (352), Expect = 3e-36
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 63 NEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQ 122
EI E+ + ++ + R + F+I +SG + +A++
Sbjct: 226 AEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGT------FNIGPTSGIVKLAKE 279
Query: 123 LDRETCPE---YKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTI-PVNE 178
LD E + Y L V A + S S++V + I + DVNDNAP++ V+E
Sbjct: 280 LDFEDLRQPHVYSLIVTATE---DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDE 336
Query: 179 DTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS 238
D +G++I A D+D GSN E+ Y + +HF+VD G + + LD + +
Sbjct: 337 DIPLGTSILRVKAMDSDSGSNAEIEYLVS-----DDHFAVDS-NGIIVNNKQLDADNNNA 390
Query: 239 -FILVVKVTDQAANISERLSTSLTARVVVKD 268
+ +V D+ S T RV K+
Sbjct: 391 YYEFIVTAKDKG---EPPKSGVATVRVYTKN 418
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 199 bits (508), Expect = 2e-59
Identities = 72/364 (19%), Positives = 124/364 (34%), Gaps = 81/364 (22%)
Query: 190 TATDADDGSNGELRYGLVRQYP-------EGNHFSVDHLTGTLTLLQPLDYETLTS---- 238
T+AD + G+ + L ++ + N + G + + + DYE L
Sbjct: 10 EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTI 69
Query: 239 --FILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSH 296
++++ + A + + + ++VKD+ND P F++ V +
Sbjct: 70 DFWVIITNMGHNAGI---KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP 126
Query: 297 VTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNI 356
V + A D D+ N + Y I RF +D G++ + ++ L +
Sbjct: 127 VFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTD-LFQLDMEYV--LYV 181
Query: 357 TASDHGIPPKSSSLVINILSETVSTSL--------PTFLSPSYHANVSEDAIPGTYIIKV 408
A D T L P F PSY A + E+ + II +
Sbjct: 182 KAEDQNGKVDDRR-----FQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISI 236
Query: 409 VARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIP 468
A+S Y +K
Sbjct: 237 KAKSF----------------ADREIRYTLK----------------------------A 252
Query: 469 AGVADDMFKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGDYDTTNVFITILDV 525
G F I +G+V LA+ LD E + Q Y+L+V T+ G + ++ I + DV
Sbjct: 253 QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDV 312
Query: 526 NDNA 529
NDNA
Sbjct: 313 NDNA 316
Score = 173 bits (440), Expect = 1e-49
Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 27/300 (9%)
Query: 90 GHVMYSLTSLSPT-----DHSGAFDIDKSSGSLVVARQLDRETCPEYK------LEVRAL 138
G ++ L + + +++G++ V ++ D E K +
Sbjct: 20 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 79
Query: 139 DTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLT--IPVNEDTLVGSTIWNFTATDADD 196
+ + + I + DVND P + PL V + + ++ A D D
Sbjct: 80 HNAG--IKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDT 137
Query: 197 GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER- 255
N + Y +VR G F VD +G + ++ ++L VK DQ + +R
Sbjct: 138 DHN--IHYFIVRD-RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194
Query: 256 LSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTY 315
++ R+ + AP F P+ + E + S + + A + + Y
Sbjct: 195 FQSTPEERLSIVG-GKRAPQFYMPS--YEAEIPENQKKDSDIISIKAKS---FADREIRY 248
Query: 316 VIS-GGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ G F++ GI+ LA+ + D + L +TA++ S+S+ + I
Sbjct: 249 TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTI 307
Score = 149 bits (377), Expect = 1e-40
Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 19/222 (8%)
Query: 57 KKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGS 116
+ ++ + P V + + D ++ Y + F++D+ SG
Sbjct: 109 RPLPMQAVVQLNAPPNTPVFTLQARD---PDTDHNIHYFIVRDRTGGR---FEVDERSGV 162
Query: 117 LVVARQLDRETCPEYKLEVRALD--TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTI 174
+ + EY L V+A D S ++ IV AP++
Sbjct: 163 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEA 221
Query: 175 PVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYE 234
+ E+ S I + A + E+RY L Q F++ +G + L + LD+E
Sbjct: 222 EIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 278
Query: 235 TLTS---FILVVKVTDQAANISERLSTSLTARVVVKDLNDNA 273
L + L+V T+ + STS+ + V D+NDNA
Sbjct: 279 DLRQPHVYSLIVTATEDSG----GFSTSVDLTIRVTDVNDNA 316
Score = 134 bits (338), Expect = 3e-35
Identities = 43/280 (15%), Positives = 86/280 (30%), Gaps = 61/280 (21%)
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK--------GILSLARVI---SEY 344
++ + D G+ + + + F + D G + + +
Sbjct: 5 PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELG 64
Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
++ V+ + + + + IL + V+ P F++
Sbjct: 65 PEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAV-------- 116
Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
V +A P T + + AR P D + +N+
Sbjct: 117 ----------------------VQLNAPPNTPVFTLQARDP-----------D-TDHNIH 142
Query: 465 YMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS-----KSGDYDTTNVF 519
Y I F++D +GVV + + +Y L V D T
Sbjct: 143 YFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEER 202
Query: 520 ITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
++I+ AP+F S Y IPEN + +++ + A
Sbjct: 203 LSIVG-GKRAPQFYMPS-YEAEIPENQKKDSDIISIKAKS 240
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 177 bits (451), Expect = 1e-52
Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 17/214 (7%)
Query: 59 YLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLV 118
+ + I ED P+G +V +++ D +++ ++ + F ++ +G +
Sbjct: 13 FDTYLLISEDTPVGSSVTQLLARD----MDNDPLVFGVSGEEASRF---FAVEPDTGVVW 65
Query: 119 VARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNE 178
+ + LDRET E+ +E D + + I++ DVNDNAP + P ++ + E
Sbjct: 66 LRQPLDRETKSEFTVEFSVSD-----HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 120
Query: 179 DTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS 238
+T VG+ I+ ATD D G+ G + Y P F++D G +T++Q LDYE +
Sbjct: 121 NTPVGTPIFIVNATDPDLGAGGSVLYSFQ---PPSPFFAIDSARGIVTVIQELDYEVTQA 177
Query: 239 FILVVKVTDQAANISERLSTSLTARVVVKDLNDN 272
+ L V TDQ + LST +++ D+ D
Sbjct: 178 YQLTVNATDQDK--TRPLSTLANLAIIITDMQDM 209
Score = 149 bits (378), Expect = 5e-42
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 24/221 (10%)
Query: 161 NDNAPRWGENPLT--IPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV 218
+ P + + + ++EDT VGS++ A D D N L +G+ + F+V
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR-FFAV 57
Query: 219 DHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS 278
+ TG + L QPLD ET + F + V+D + + V D+NDNAP F
Sbjct: 58 EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ------GVITRKVNIQVGDVNDNAPTF-- 109
Query: 279 PTRGSL-IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSL 337
+ + E T VG+ + + A D D G G V Y + F +D +GI+++
Sbjct: 110 -HNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF--FAIDSARGIVTV 166
Query: 338 ARVISEYDHQSKFRAVLNITASDHGIPPKSSS---LVINIL 375
+ + D++ L + A+D S+ L I I
Sbjct: 167 IQEL---DYEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204
Score = 146 bits (371), Expect = 4e-41
Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 63/265 (23%)
Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLD 329
+ P F + + + +SE T VGS VT++ A D D N + + +SG F ++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 330 HDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSP 389
D G++ L + + D ++K + + SDH + + I + V+ + PTF +
Sbjct: 59 PDTGVVWLRQPL---DRETKSEFTVEFSVSDHQGVI-TRKVNIQVGD--VNDNAPTFHNQ 112
Query: 390 SYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYV 449
Y + E+ GT I V A P D
Sbjct: 113 PYSVRIPENTPVGTPIFIVNATDP----------------D------------------- 137
Query: 450 YHMYLISDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD 507
G + Y F ID+ G+VT+ + LD E Y L V+ TD
Sbjct: 138 ---------LGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 186
Query: 508 SKSGD----YDTTNVFITILDVNDN 528
N+ I I D+ D
Sbjct: 187 --QDKTRPLSTLANLAIIITDMQDM 209
Score = 112 bits (283), Expect = 9e-29
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKID 479
+ L+SED G+ + +++AR D L + + A F ++
Sbjct: 12 FFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRFFAVE 58
Query: 480 AETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYP 539
+TGVV L + LDRET ++ + V+D T V I + DVNDNAP F + Y
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSD--HQGVITRKVNIQVGDVNDNAPTFHNQP-YS 115
Query: 540 ITIPENSEA-ANVHTFIATD 558
+ IPEN+ + ATD
Sbjct: 116 VRIPENTPVGTPIFIVNATD 135
Score = 30.6 bits (70), Expect = 1.0
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 526 NDNAPEF-KSGSCYPITIPENSEA-ANVHTFIATD 558
+ P F + I E++ ++V +A D
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARD 36
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 161 bits (409), Expect = 2e-46
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 14/214 (6%)
Query: 65 IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
I+E + + +D +G G++ Y L S F ID SG++ + LD
Sbjct: 11 IEEYTGPDPVLVGRLHSDID--SGDGNIKYIL---SGEGAGTIFVIDDKSGNIHATKTLD 65
Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
RE +Y L +A+D T+ P +++ D+NDN P + V E + VG+
Sbjct: 66 REERAQYTLMAQAVDRDTNR-PLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGT 124
Query: 185 TIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP-LDYETLTSFI 240
++ TA+DADD G++ +L Y ++ P +FSV+ TG + P +D E +
Sbjct: 125 SVIQVTASDADDPTYGNSAKLVYSILEGQP---YFSVEAQTGIIRTALPNMDREAKEEYH 181
Query: 241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAP 274
+V++ D ++ LS + + + D +
Sbjct: 182 VVIQAKDMGGHMG-GLSGTTKVTITLTDDYKDDD 214
Score = 134 bits (340), Expect = 1e-36
Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 54/255 (21%)
Query: 284 LIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
+ E T + D DSG +G + Y++SG F +D G + + + +
Sbjct: 8 FFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTL-D 65
Query: 344 YDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPG 402
+ ++++ L A D P + + ++ + P FL YHANV E + G
Sbjct: 66 REERAQYT--LMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123
Query: 403 TYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN 462
T +I+V A D G +
Sbjct: 124 TSVIQVTASDA----------------DDPT-------------------------YGNS 142
Query: 463 --LTYMIPAGVADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDS---KSGDYDTT 516
L Y I G F ++A+TG++ A ++DRE ++Y++V+ D G TT
Sbjct: 143 AKLVYSILEG--QPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTT 200
Query: 517 NVFITILDVNDNAPE 531
V IT+ D + +
Sbjct: 201 KVTITLTDDYKDDDK 215
Score = 127 bits (320), Expect = 8e-34
Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 16/213 (7%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
W N + + E T + +D D G +G ++Y L + G F +D +G +
Sbjct: 3 WVWNQFFV-IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGE-GAGTIFVIDDKSGNIH 59
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIY 286
+ LD E + L+ + D+ N L V V+D+NDN P F+
Sbjct: 60 ATKTLDREERAQYTLMAQAVDRDTNRP--LEPPSEFIVKVQDINDNPPEFLHEI--YHAN 115
Query: 287 VSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
V E++ VG+ V ++TA D D G++ ++ Y I G F ++ GI+ A +
Sbjct: 116 VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPY--FSVEAQTGIIRTALPNMD 173
Query: 344 YDHQSKFRAVLNITASDHG--IPPKSSSLVINI 374
+ + ++ + I A D G + S + + I
Sbjct: 174 REAKEEYH--VVIQAKDMGGHMGGLSGTTKVTI 204
Score = 111 bits (281), Expect = 2e-28
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 419 YVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKI 478
+V+ + F++ E P ++ + D N+ Y++ A +F I
Sbjct: 3 WVWNQFFVIEEYTGPDPVLVGRLHSDI-----------DSGDGNIKYILSGEGAGTIFVI 51
Query: 479 DAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY--DTTNVFITILDVNDNAPEFKSGS 536
D ++G + ++LDRE QY L+ D + + + + D+NDN PEF
Sbjct: 52 DDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEI 111
Query: 537 CYPITIPENSEA-ANVHTFIATD 558
Y +PE S +V A+D
Sbjct: 112 -YHANVPERSNVGTSVIQVTASD 133
Score = 84.6 bits (210), Expect = 6e-19
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDK 112
+F + + + E +G +V V ++D+ G ++YS+ P F ++
Sbjct: 106 EFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPY-----FSVEA 160
Query: 113 SSGSLVVA-RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR 166
+G + A +DRE EY + ++A D S + I + D + +
Sbjct: 161 QTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 156 bits (396), Expect = 1e-44
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 13/213 (6%)
Query: 64 EIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVAR 121
+ E+ G +V S + + YS+T +G F I+ SG L V +
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDK--NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 64
Query: 122 QLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTL 181
LDRE + L A+D + N + + I I ++D+NDN P + V E +
Sbjct: 65 PLDRELIARFHLRAHAVDING--NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122
Query: 182 VGSTIWNFTATDADD--GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
G+ + TA DADD NG LRY ++ Q P N F++++ TG + T+ LD E
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK 182
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ + L+++ TD N + LS + TA + V D
Sbjct: 183 VQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 134 bits (340), Expect = 1e-36
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 24/221 (10%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLV---RQYPEGNHFSVDHLTG 223
W P+ +P N G +D N LRY + P F ++ ++G
Sbjct: 2 WVIPPINLPENSR---GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRG 282
L++ +PLD E + F L D ++ + + V D+NDN P F+ G
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVIDMNDNRPEFLHQVWNG 115
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDAR----FHLDHDKGILS 336
S V E ++ G++V +TA+D D + NG + Y I F ++++ G +
Sbjct: 116 S---VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII 172
Query: 337 LARVISEYDHQSKFRAVLNITASDHGIPPK---SSSLVINI 374
+ + ++ L I A+D P S++ I
Sbjct: 173 TVAAGLDREKVQQYT--LIIQATDMEGNPTYGLSNTATAVI 211
Score = 125 bits (315), Expect = 3e-33
Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 65/264 (24%)
Query: 276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHD 331
+V P I + E +R G ++ + D N + Y ++G D F ++
Sbjct: 2 WVIPP----INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPI 56
Query: 332 KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSY 391
G LS+ + + + + ++F L A D + + I I ++ + P FL +
Sbjct: 57 SGQLSVTKPL-DRELIARFH--LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113
Query: 392 HANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH 451
+ +V E + PGTY++ V A + D
Sbjct: 114 NGSVPEGSKPGTYVMTVTA----------------IDAD--------------------- 136
Query: 452 MYLISDFSGYN--LTYMI----PAGVADDMFKIDAETGVV-TLARSLDRETVDQYNLVVH 504
D + N L Y I P+ + +MF I+ ETG + T+A LDRE V QY L++
Sbjct: 137 -----DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQ 191
Query: 505 VTDS----KSGDYDTTNVFITILD 524
TD G +T IT+ D
Sbjct: 192 ATDMEGNPTYGLSNTATAVITVTD 215
Score = 90.9 bits (226), Expect = 5e-21
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 21/146 (14%)
Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF-SGYNLTYMIPAGVADD---- 474
V + + E++ G + ++V SD +L Y + AD
Sbjct: 3 VIPPIN-LPENS-RGPFPQELVRIR-----------SDRDKNLSLRYSVTGPGADQPPTG 49
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILDVNDNAPEFK 533
+F I+ +G +++ + LDRE + +++L H D + ++ I ++D+NDN PEF
Sbjct: 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL 109
Query: 534 SGSCYPITIPENSEA-ANVHTFIATD 558
+ ++PE S+ V T A D
Sbjct: 110 H-QVWNGSVPEGSKPGTYVMTVTAID 134
Score = 66.2 bits (162), Expect = 1e-12
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 62 NNEIKEDVPIGFTVGNVVSTDSTGRAGG-GHVMYSLTSLSP-TDHSGAFDIDKSSGSLV- 118
N + E G V V + D+ G + Y + S +P T F I+ +G ++
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIIT 173
Query: 119 VARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVD 159
VA LDRE +Y L ++A D + S A I + D
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 152 bits (387), Expect = 2e-43
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE 126
D P+ VG + S+ MY + + F + G + +LDRE
Sbjct: 13 IDSPLPHHVGKLTSSVGNKN-----AMYIIEG---ESANTIFKVQGYDGDIYAFERLDRE 64
Query: 127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTI 186
EY+L +D + I++ D+NDNAP + + V E + +G+++
Sbjct: 65 KKAEYELTAHIIDRRN-NRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV 123
Query: 187 WNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVV 243
TA DADD + + Y +++ +F+VD T LD E+ +++ ++V
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQIIKGNE---YFTVDDSGVIFTARADLDRESQSAYEIIV 180
Query: 244 KVTDQAANISERLSTSLTARVVVKD 268
K D S++ T + + D
Sbjct: 181 KAKDALGLTG--ESSTATVIIRLTD 203
Score = 134 bits (340), Expect = 8e-37
Identities = 57/218 (26%), Positives = 84/218 (38%), Gaps = 30/218 (13%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
W N + I D+ + + N Y + + F V G +
Sbjct: 2 WIWNRMHIREEIDSPLPHHV----GKLTSSVGNKNAMYIIEGE-SANTIFKVQGYDGDIY 56
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RGSLI 285
+ LD E + L + D+ N S L + V D+NDNAP+FV GS
Sbjct: 57 AFERLDREKKAEYELTAHIIDRRNNRS--LEPPSKFIIKVSDINDNAPIFVQKIFNGS-- 112
Query: 286 YVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLAR--- 339
V E +R+G+ VTK+TA D D + VTY I GNE F +D I +
Sbjct: 113 -VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY--FTVDDSGVIFTARADLD 169
Query: 340 --VISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINI 374
S Y + + A D G+ +SS+ + I
Sbjct: 170 RESQSAY--------EIIVKAKDALGLTGESSTATVII 199
Score = 112 bits (282), Expect = 8e-29
Identities = 43/247 (17%), Positives = 82/247 (33%), Gaps = 57/247 (23%)
Query: 285 IYVSE--QTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
+++ E + + HV K S N Y+I G + + F + G + +
Sbjct: 7 MHIREEIDSPLPHHVGK----LTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERL- 61
Query: 343 EYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIP 401
+ + ++++ L D I ++ + P F+ ++ +V E +
Sbjct: 62 DREKKAEYE--LTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119
Query: 402 GTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGY 461
GT + KV A D
Sbjct: 120 GTSVTKVTAEDA----------------D-------------------------DPTVAG 138
Query: 462 N--LTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS--KSGDYDTTN 517
+ +TY I G ++ F +D + T LDRE+ Y ++V D+ +G+ T
Sbjct: 139 HATVTYQIIKG--NEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTAT 196
Query: 518 VFITILD 524
V I + D
Sbjct: 197 VIIRLTD 203
Score = 96.6 bits (241), Expect = 3e-23
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 456 SDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--Y 513
S N Y+I A+ +FK+ G + LDRE +Y L H+ D ++
Sbjct: 26 SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLE 85
Query: 514 DTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
+ I + D+NDNAP F + ++PE S +V A D
Sbjct: 86 PPSKFIIKVSDINDNAPIFVQKI-FNGSVPEMSRLGTSVTKVTAED 130
Score = 67.0 bits (164), Expect = 5e-13
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDK 112
F + + N + E +G +V V + D+ V Y + + F +D
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY-----FTVDD 157
Query: 113 SSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
S LDRE+ Y++ V+A D + +SS + I + D
Sbjct: 158 SGVIFTARADLDRESQSAYEIIVKAKD-ALGLTGESSTATVIIRLTD 203
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 151 bits (384), Expect = 5e-43
Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 65 IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
++E + + +D G G + Y L+ F I++++G + ++LD
Sbjct: 10 LEEYTGSDYQYVGKLHSDQD--RGDGSLKYILSG---DGAGDLFIINENTGDIQATKRLD 64
Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
RE P Y L +A++ T P I+I D+NDN P + ++ T V E VG+
Sbjct: 65 REEKPVYILRAQAVNRRTG-RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGT 123
Query: 185 TIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFI 240
+ TATDADD G++ ++ Y +++ P +FSV+ TG + T L +D E +
Sbjct: 124 FVVQVTATDADDPTYGNSAKVVYSILQGQP---YFSVESETGIIKTALLNMDRENREQYQ 180
Query: 241 LVVKVTDQAANISERLSTSLTARVVVKD 268
+V++ D + LS + T + + D
Sbjct: 181 VVIQAKDMGGQMG-GLSGTTTVNITLTD 207
Score = 127 bits (320), Expect = 7e-34
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 18/216 (8%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
W N + + E T +D D G +G L+Y L G+ F ++ TG +
Sbjct: 2 WMANQFFL-LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGD-GAGDLFIINENTGDIQ 58
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIY 286
+ LD E +IL + ++ + + + D+NDN P+F
Sbjct: 59 ATKRLDREEKPVYILRAQAVNRRTG--RPVEPESEFIIKIHDINDNEPIFTKDV--YTAT 114
Query: 287 VSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
V E VG+ V ++TA D D G++ +V Y I G F ++ + GI+ A + +
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY--FSVESETGIIKTALLNMD 172
Query: 344 YDHQSKFRAVLNITASDHGIPPKSSS----LVINIL 375
+++ ++ + I A D G S + I +
Sbjct: 173 RENREQY--QVVIQAKDMGGQMGGLSGTTTVNITLT 206
Score = 117 bits (294), Expect = 3e-30
Identities = 51/256 (19%), Positives = 90/256 (35%), Gaps = 57/256 (22%)
Query: 276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGIL 335
+++ + E T DQD G +G + Y++SG F ++ + G +
Sbjct: 2 WMANQ---FFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDI 57
Query: 336 SLARVISEYDHQSKFRAVLNITASDHG-IPPKSSSLVINILSETVSTSLPTFLSPSYHAN 394
+ + + + + + L A + P I ++ + P F Y A
Sbjct: 58 QATKRL-DREEKPVYI--LRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTAT 114
Query: 395 VSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYL 454
V E A GT++++V A D
Sbjct: 115 VPEMADVGTFVVQVTATDA----------------D------------------------ 134
Query: 455 ISDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDS--- 508
G + + Y I G F +++ETG++ A ++DRE +QY +V+ D
Sbjct: 135 -DPTYGNSAKVVYSILQG--QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQ 191
Query: 509 KSGDYDTTNVFITILD 524
G TT V IT+ D
Sbjct: 192 MGGLSGTTTVNITLTD 207
Score = 108 bits (271), Expect = 4e-27
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 15/143 (10%)
Query: 419 YVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKI 478
++ + FL+ E + + D +L Y++ A D+F I
Sbjct: 2 WMANQFFLLEEYTGSDYQYVGKLHSDQ-----------DRGDGSLKYILSGDGAGDLFII 50
Query: 479 DAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--YDTTNVFITILDVNDNAPEFKSGS 536
+ TG + + LDRE Y L + ++G + I I D+NDN P F +
Sbjct: 51 NENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIF-TKD 109
Query: 537 CYPITIPENSEA-ANVHTFIATD 558
Y T+PE ++ V ATD
Sbjct: 110 VYTATVPEMADVGTFVVQVTATD 132
Score = 68.5 bits (168), Expect = 2e-13
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDK 112
F K + + E +G V V +TD+ G V+YS+ P F ++
Sbjct: 105 IFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY-----FSVES 159
Query: 113 SSGSLVVA-RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
+G + A +DRE +Y++ ++A D S + I + D
Sbjct: 160 ETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 151 bits (382), Expect = 3e-42
Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 29/238 (12%)
Query: 64 EIKEDVPIGFTVGNVVSTDST-GRAGGGHVMYSL--TSLSPTDHSGAFDIDKSSGSLVVA 120
++ D G + V + + L T + + I + +G L +
Sbjct: 11 KLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQ 70
Query: 121 RQLDRETCPEYK------------LEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWG 168
R LD + + L+V TS ++ N + P
Sbjct: 71 RSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACS 130
Query: 169 ENP----------LTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV 218
+ + E+ G+ + Y L+ EG F
Sbjct: 131 SLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLE--GEGLPFRS 188
Query: 219 DHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
+ ++ LD E + LV T A + + V V D +D+AP F
Sbjct: 189 APDSLEVSTRWALDREQREKYELVAVCTVHAG--AREEVVMVPFPVTVYDEDDSAPEF 244
Score = 121 bits (304), Expect = 2e-31
Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 32/226 (14%)
Query: 176 VNEDTLVGSTIWNFTAT--DADDGSNGELRYGLVRQY----PEGNHFSVDHLTGTLTLLQ 229
+ D G+ + A ++ + L L Y E N + TG L L +
Sbjct: 12 LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71
Query: 230 PLDYETLTSF------------ILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV 277
LD+ + L V ++ + E ARV N + P
Sbjct: 72 SLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGE-CQWPGCARVYFSFFNTSFPACS 130
Query: 278 SPTRGSL--------IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLD 329
S L + E G+ Q V Y + G F
Sbjct: 131 SLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLP-FRSA 189
Query: 330 HDKGILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINI 374
D +S + D + + + L + H G + + +
Sbjct: 190 PDSLEVSTRWAL---DREQREKYELVAVCTVHAGAREEVVMVPFPV 232
Score = 115 bits (288), Expect = 3e-29
Identities = 45/262 (17%), Positives = 90/262 (34%), Gaps = 45/262 (17%)
Query: 287 VSEQTRVGSHVTKMTAV--DQDSGDNGRVTYVI-----SGGNEDARFHLDHDKGILSLAR 339
+ G+ + + A+ + + R+ + + +E+ + D G+L L R
Sbjct: 12 LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71
Query: 340 VISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVS--- 396
+ DH S + ++ + G P + L + + + ++ A V
Sbjct: 72 SL---DHSSWEK----LSVRNRGFPLLTVYLKVFL---SPTSLREGECQWPGCARVYFSF 121
Query: 397 -EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLI 455
+ P + P F + E+ PGT+ +
Sbjct: 122 FNTSFP-----ACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQ---------- 166
Query: 456 SDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY 513
F + Y + G F+ ++ V+ +LDRE ++Y LV T +G
Sbjct: 167 --FLCPQISVAYRLLEG-EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTV-HAGAR 222
Query: 514 ---DTTNVFITILDVNDNAPEF 532
+T+ D +D+APEF
Sbjct: 223 EEVVMVPFPVTVYDEDDSAPEF 244
Score = 88.4 bits (219), Expect = 6e-20
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 47 TPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDH 104
+ F + + I+E+ P G + + V Y L
Sbjct: 130 SSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPV---QFLCPQISVAYRLLE----GE 182
Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
F S + LDRE +Y+L + + + V + + D +D+A
Sbjct: 183 GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHA-GAREEVVMVPFPVTVYDEDDSA 241
Query: 165 PR 166
P
Sbjct: 242 PE 243
Score = 78.4 bits (193), Expect = 2e-16
Identities = 25/198 (12%), Positives = 50/198 (25%), Gaps = 60/198 (30%)
Query: 386 FLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSP 445
F +Y + D GT ++ V A + +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHA----------------LRDAPEEVPS--------- 37
Query: 446 STYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYN----- 500
H+Y + ++ +I +TG++ L RSLD + ++ +
Sbjct: 38 FRLGQHLYGTYRTRLH----------ENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRG 87
Query: 501 -------LVVHVTDSKSGD---YDTTNVFITILDVNDNAPEFKSGSC---------YPIT 541
L V ++ + + + N + P S
Sbjct: 88 FPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFR 147
Query: 542 IPENSEA-ANVHTFIATD 558
I EN +
Sbjct: 148 IRENRPPGTFHQFRLLPV 165
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 149 bits (378), Expect = 6e-42
Identities = 66/213 (30%), Positives = 97/213 (45%), Gaps = 15/213 (7%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQ 122
E+ G N+V S R V YS+T G F I++ +G L V +
Sbjct: 8 SCPENEK-GEFPKNLVQIKSN-RDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
LDRE +Y L A+ ++ + I I + D NDN P + + V E +
Sbjct: 66 LDREAIAKYILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 183 GSTIWNFTATDADDGS---NGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
G+++ +ATDADD N + Y +V Q PE N F+V+ TG + L LD E+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
++ LVV+ D E LST+ A + VKD
Sbjct: 184 YPTYTLVVQAADLQ---GEGLSTTAKAVITVKD 213
Score = 134 bits (339), Expect = 2e-36
Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 24/222 (10%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTG 223
W ++ P NE G N ++ ++ Y + Q P F ++ TG
Sbjct: 2 WVIAAISCPENEK---GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RG 282
L + QPLD E + +IL + E + + + V D NDN P F G
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVS---SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDSG---DNGRVTYVISGGNEDAR----FHLDHDKGIL 335
S V+E G+ V K++A D D N + Y I + + F ++ D G++
Sbjct: 116 S---VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVI 172
Query: 336 SLARVISEYDHQSKFRAVLNITASDHGIPPKSSS--LVINIL 375
S+ + + + L + A+D S++ VI +
Sbjct: 173 SVLTSGLDRESYPTYT--LVVQAADLQGEGLSTTAKAVITVK 212
Score = 116 bits (292), Expect = 5e-30
Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 45/246 (18%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
I E + G + + + +V Y I+G D F ++ + G L + +
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
+ + + +K+ L A + I I + + P F + +V+E A+
Sbjct: 66 L-DREAIAKYI--LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 401 PGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSG 460
PGT ++KV A D TY +
Sbjct: 123 PGTSVMKVSATDA----------------DDDVNTYNAAIA------------------- 147
Query: 461 YNLTYMIPAGVADDMFKIDAETGVV-TLARSLDRETVDQYNLVVHVTDS-KSGDYDTTNV 518
Y + P +MF ++ +TGV+ L LDRE+ Y LVV D G T
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKA 207
Query: 519 FITILD 524
IT+ D
Sbjct: 208 VITVKD 213
Score = 89.7 bits (223), Expect = 9e-21
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 24/141 (17%)
Query: 427 VSEDAIPGTYIIKVVARSPSTYVYHMYLISDF-SGYNLTYMIPAGVADD----MFKIDAE 481
E+ G + +V + S+ + Y I AD +F I+ E
Sbjct: 9 CPENE-KGEFPKNLVQ-----------IKSNRDKETKVFYSITGQGADKPPVGVFIIERE 56
Query: 482 TGVVTLARSLDRETVDQYNLVVHVTDSKSGDY---DTTNVFITILDVNDNAPEFKSGSCY 538
TG + + + LDRE + +Y L H S D + IT+ D NDN PEF + +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVS--SNGEAVEDPMEIVITVTDQNDNRPEF-TQEVF 113
Query: 539 PITIPENSEA-ANVHTFIATD 558
++ E + +V ATD
Sbjct: 114 EGSVAEGAVPGTSVMKVSATD 134
Score = 62.7 bits (153), Expect = 2e-11
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 62 NNEIKEDVPIGFTVGNVVSTDSTGRAGGGH--VMYSLTSLSP-TDHSGAFDIDKSSGSLV 118
+ E G +V V +TD+ + + Y++ S P H F +++ +G +
Sbjct: 114 EGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVIS 173
Query: 119 VA-RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
V LDRE+ P Y L V+A D S+ I + D
Sbjct: 174 VLTSGLDRESYPTYTLVVQAADLQG--EGLSTTAKAVITVKD 213
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 144 bits (365), Expect = 3e-40
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 18/219 (8%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
+P+ IP N+ + +D +GS L V Q P+G F ++ TG+++
Sbjct: 3 IVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG-TFRINENTGSVS 61
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RGSLI 285
+ + LD ET+ ++ L V+ TD + L + V+V D NDN P+F G
Sbjct: 62 VTRTLDRETIATYQLYVETTDASGKT---LEGPVPLEVIVIDQNDNRPIFREGPYIGH-- 116
Query: 286 YVSEQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDAR----FHLDHDKGILSLAR 339
V E + G+ V +MTA D D + DN + Y I D F++D +KG +
Sbjct: 117 -VMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVV 175
Query: 340 VISEYDHQSKFRAV--LNITASDHG--IPPKSSSLVINI 374
+ D ++ L I A D + + I
Sbjct: 176 SPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATI 214
Score = 144 bits (365), Expect = 4e-40
Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVARQLDR 125
+ P VG VV +D + LT D G F I++++GS+ V R LDR
Sbjct: 14 QRQPFPRDVGKVVDSDR-----PEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGST 185
ET Y+L V D S V +++ ++D NDN P + E P V E + G+T
Sbjct: 69 ETIATYQLYVETTDAS--GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126
Query: 186 IWNFTATDADD--GSNGELRYGLVRQYPEG---NHFSVDHLTGTLTLLQP---LDYETL- 236
+ TA DADD N LRY + +Q P+ N F +D G + + LD ETL
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186
Query: 237 -TSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ L+++ D A L+ + TA +V+ D
Sbjct: 187 NPKYELIIEAQDMAGL-DVGLTGTATATIVIDD 218
Score = 115 bits (290), Expect = 9e-30
Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 59/254 (23%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEY 344
I +++ V K+ D+ G R+T + F ++ + G +S+ R + +
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL-DR 68
Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
+ + ++ L + +D + + ++ + + P F Y +V E + GT
Sbjct: 69 ETIATYQ--LYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126
Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN-- 462
++++ A D D + N
Sbjct: 127 VMRMTAFDA----------------D--------------------------DPATDNAL 144
Query: 463 LTYMI----PAGVADDMFKIDAETGVVTLARS---LDRETVD--QYNLVVHVTDS---KS 510
L Y I P + +MF ID E G + S LDRET++ +Y L++ D
Sbjct: 145 LRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDV 204
Query: 511 GDYDTTNVFITILD 524
G T I I D
Sbjct: 205 GLTGTATATIVIDD 218
Score = 96.7 bits (241), Expect = 5e-23
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 14/142 (9%)
Query: 420 VYTEVFL-VSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKI 478
V + + + ++ + KVV + LT F+I
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDRPEGSK----------FRLTGKGVDQDPKGTFRI 53
Query: 479 DAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILDVNDNAPEFKSGSC 537
+ TG V++ R+LDRET+ Y L V TD+ + + ++D NDN P F+ G
Sbjct: 54 NENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGP- 112
Query: 538 YPITIPENSEA-ANVHTFIATD 558
Y + E S V A D
Sbjct: 113 YIGHVMEGSPTGTTVMRMTAFD 134
Score = 63.2 bits (154), Expect = 2e-11
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGG-GHVMYSLTSLSPTD-HSGAFDIDKSSGSLVVAR 121
+ E P G TV + + D+ A + Y++ +P F ID G +V
Sbjct: 116 HVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVV 175
Query: 122 Q---LDRETC--PEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
LDRET P+Y+L + A D + + I I D
Sbjct: 176 SPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 98.3 bits (246), Expect = 9e-25
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 155 IEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN 214
NDN+PR+ ++ + E++ G+ I A D D G NG++ Y
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 215 H-FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNA 273
+D +G L++L +D E + V D+ + T + +KD NDN
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQP---PKTDKATVVLNIKDENDNV 118
Query: 274 P 274
P
Sbjct: 119 P 119
Score = 77.9 bits (193), Expect = 2e-17
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 264 VVVKDLNDNAPVFVSPTRGSLIY---VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGG 320
NDN+P F +Y ++E + G+ + ++ A D D G NG++ YV
Sbjct: 2 SSGSSGNDNSPRFEKS-----VYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAA 56
Query: 321 NEDAR--FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSS--SLVINIL 375
E R LD G LS+ I D + + + A D G PPK+ ++V+NI
Sbjct: 57 TESVRRLLRLDETSGWLSVLHRI---DREEVNQLRFTVMARDRGQPPKTDKATVVLNIK 112
Score = 75.6 bits (187), Expect = 8e-17
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 65 IKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
+ E+ G + + + D G G + Y + + +D++SG L V ++
Sbjct: 23 LAENSAPGTPILQLRAADLDVGV--NGQIEYVFGAATE-SVRRLLRLDETSGWLSVLHRI 79
Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAP 165
DRE + + V A D P++ + + I D NDN P
Sbjct: 80 DREEVNQLRFTVMARD--RGQPPKTDKATVVLNIKDENDNVP 119
Score = 68.7 bits (169), Expect = 2e-14
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 427 VSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVAD--DMFKIDAET 482
++E++ PGT I+++ A D G N + Y+ A + ++D +
Sbjct: 23 LAENSAPGTPILQLRAADL-----------D-VGVNGQIEYVFGAATESVRRLLRLDETS 70
Query: 483 GVVTLARSLDRETVDQYNLVVHVTDSKSGDY---DTTNVFITILDVNDNAP 530
G +++ +DRE V+Q V D G D V + I D NDN P
Sbjct: 71 GWLSVLHRIDREEVNQLRFTVMARD--RGQPPKTDKATVVLNIKDENDNVP 119
Score = 39.4 bits (93), Expect = 3e-04
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 520 ITILDVNDNAPEFKSGSCYPITIPENS 546
+ NDN+P F S Y + ENS
Sbjct: 2 SSGSSGNDNSPRF-EKSVYEADLAENS 27
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 95.8 bits (239), Expect = 6e-24
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDH 220
W P+ +P N G + N LRY + P F ++
Sbjct: 1 GSDWVIPPINLPENSR---GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINP 57
Query: 221 LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
++G L++ +PLD E + F L D ++ + + V D+NDN P F
Sbjct: 58 ISGQLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVIDMNDNRPEF 110
Score = 82.3 bits (204), Expect = 3e-19
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 425 FLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF-SGYNLTYMIPAGVADD----MFKID 479
+ E++ G + ++V + S +L Y + AD +F I+
Sbjct: 9 INLPENS-RGPFPQELVR-----------IRSGRDKNLSLRYSVTGPGADQPPTGIFIIN 56
Query: 480 AETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNAPEF 532
+G +++ + LDRE + +++L H D + ++ I ++D+NDN PEF
Sbjct: 57 PISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 78.9 bits (195), Expect = 5e-18
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 64 EIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSL-SPTDHSGAFDIDKSSGSLVVAR 121
+ E+ G +V S + + YS+T + +G F I+ SG L V +
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDK--NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 66
Query: 122 QLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR 166
LDRE + L A+D + N + + I I ++D+NDN P
Sbjct: 67 PLDRELIARFHLRAHAVDING--NQVENPIDIVINVIDMNDNRPE 109
Score = 61.1 bits (149), Expect = 8e-12
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 273 APVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHL 328
+V P I + E +R G ++ + N + Y ++G D F +
Sbjct: 1 GSDWVIPP----INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFII 55
Query: 329 DHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ G LS+ + + + + ++F L A D + + I I
Sbjct: 56 NPISGQLSVTKPL-DRELIARFH--LRAHAVDINGNQVENPIDIVI 98
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 95.9 bits (239), Expect = 7e-24
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHL 221
W P+ + ED + I +D + ++ Y + P F +
Sbjct: 10 RAWITAPVALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKD 68
Query: 222 TGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
TG L + LD E F+L D + L R+ V D+NDN PVF
Sbjct: 69 TGELNVTSILDREETPFFLLTGYALDAR---GNNVEKPLELRIKVLDINDNEPVF 120
Score = 85.8 bits (213), Expect = 3e-20
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDR 125
ED+ + + S + R G + Y T G F +K +G L V LDR
Sbjct: 23 EDLSKKNPIAKIHSDLAEER--GLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDR 80
Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGEN 170
E P + L ALD N + ++I+++D+NDN P + ++
Sbjct: 81 EETPFFLLTGYALDARG--NNVEKPLELRIKVLDINDNEPVFTQD 123
Score = 83.1 bits (206), Expect = 2e-19
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 426 LVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADD----MFKIDAE 481
ED I K+ + G +TY + +F + +
Sbjct: 20 REGEDLSKKNPIAKIHSDLAEE-----------RGLKITYKYTGKGITEPPFGIFVFNKD 68
Query: 482 TGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVFITILDVNDNAPEF 532
TG + + LDRE + L + D++ + + + I +LD+NDN P F
Sbjct: 69 TGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 53.5 bits (129), Expect = 6e-09
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
+ E + + K+ + D ++TY +G F + D G L++ +
Sbjct: 19 LREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSI 77
Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ + + F L A D L + I
Sbjct: 78 L-DREETPFFL--LTGYALDARGNNVEKPLELRI 108
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 86.7 bits (216), Expect = 1e-20
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 155 IEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEG- 213
NDN P + E + + + E+ VG+++ ATDAD GSN E+RY Q
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 214 -NHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLN 270
F++++ TG +T+ + LD E + V +D ++ T + V D+N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSS-----TPARATVTINVTDVN 114
Score = 71.7 bits (177), Expect = 1e-15
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 264 VVVKDLNDNAPVFVSPTRGSLIY---VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISG- 319
NDN PVF + E VG+ V ++ A D D G N + Y+
Sbjct: 2 SSGSSGNDNRPVFKEG-----QVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQ 56
Query: 320 GNEDAR--FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINIL 375
+ F L++ G++++ R + D + + + ASD P +++ IN+
Sbjct: 57 VAPATKRLFALNNTTGLITVQRSL---DREETAIHKVTVLASDGSSTPARATVTINVT 111
Score = 59.8 bits (146), Expect = 2e-11
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 65 IKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
I E+ P+G +V + +TD+ G + Y + F ++ ++G + V R L
Sbjct: 23 IPENAPVGTSVIQLHATDADIGS--NAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSL 80
Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVN 161
DRE +K+ V A D + A A + I + DVN
Sbjct: 81 DREETAIHKVTVLASD-----GSSTPARATVTINVTDVN 114
Score = 59.0 bits (144), Expect = 5e-11
Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 44/145 (30%)
Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSP--STYGNYVYTEVFLVSEDAIPGTYIIKVV 441
P F ++ E+A GT +I++ A + Y V+
Sbjct: 12 PVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK--------- 62
Query: 442 ARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNL 501
+F ++ TG++T+ RSLDRE + +
Sbjct: 63 --------------------------------RLFALNNTTGLITVQRSLDREETAIHKV 90
Query: 502 VVHVTDSKSGDYDTTNVFITILDVN 526
V +D S V I + DVN
Sbjct: 91 TVLASD-GSSTPARATVTINVTDVN 114
Score = 40.5 bits (96), Expect = 1e-04
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 520 ITILDVNDNAPEFKSGSCYPITIPENS 546
+ NDN P FK + IPEN+
Sbjct: 2 SSGSSGNDNRPVFKE-GQVEVHIPENA 27
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 81.3 bits (201), Expect = 5e-19
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
+P+ IP N+ + +D +GS L V Q P+G F ++ TG+++
Sbjct: 3 IVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG-TFRINENTGSVS 61
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ + LD ET+ ++ L V+ TD + + L + V+V D
Sbjct: 62 VTRTLDRETIATYQLYVETTDAS---GKTLEGPVPLEVIVID 100
Score = 65.1 bits (159), Expect = 3e-13
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 426 LVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVV 485
++ + KVV + LT F+I+ TG V
Sbjct: 11 PENQRQPFPRDVGKVVDSDRPEGSK----------FRLTGKGVDQDPKGTFRINENTGSV 60
Query: 486 TLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILD 524
++ R+LDRET+ Y L V TD+ + + ++D
Sbjct: 61 SVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 60.8 bits (148), Expect = 7e-12
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVARQLDR 125
+ P VG VV +D + LT D G F I++++GS+ V R LDR
Sbjct: 14 QRQPFPRDVGKVVDSDR-----PEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
ET Y+L V D S V +++ ++D
Sbjct: 69 ETIATYQLYVETTD--ASGKTLEGPVPLEVIVID 100
Score = 60.8 bits (148), Expect = 7e-12
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 285 IYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
I + E R V K+ D+ G R+T + F ++ + G +S+ R +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL- 66
Query: 343 EYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ + + ++ L + +D + + +
Sbjct: 67 DRETIATYQ--LYVETTDASGKTLEGPVPLEV 96
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 74.7 bits (184), Expect = 1e-16
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHL 221
W P++ P NE + ++ G++ Y + Q P F ++
Sbjct: 4 GSWVIPPISCPENEKGPFPKNL---VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 222 TGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
TG L + +PLD E + ++ L + + + V D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSN---GNAVEDPMEILITVTD 104
Score = 62.8 bits (153), Expect = 2e-12
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDR 125
E P + + S G V YS+T T G F I++ +G L V LDR
Sbjct: 17 EKGPFPKNLVQIKSNKDKE----GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDR 72
Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
E Y L A+ ++ N + I I + D
Sbjct: 73 ERIATYTLFSHAVSSNG--NAVEDPMEILITVTD 104
Score = 61.2 bits (149), Expect = 6e-12
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 273 APVF--VSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----F 326
P+ V P I E + G + + + G+V Y I+G D F
Sbjct: 1 GPLGSWVIPP----ISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVF 55
Query: 327 HLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
++ + G L + + + + + + L A + I I
Sbjct: 56 IIERETGWLKVTEPL-DRERIATYT--LFSHAVSSNGNAVEDPMEILI 100
Score = 60.1 bits (146), Expect = 2e-11
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 462 NLTYMIPAGVADD----MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TT 516
+ Y I AD +F I+ ETG + + LDRE + Y L H S +
Sbjct: 37 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPM 96
Query: 517 NVFITILD 524
+ IT+ D
Sbjct: 97 EILITVTD 104
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 74.3 bits (183), Expect = 1e-16
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
++IP N+ + +D GS +L V Q P+G F ++ +G ++
Sbjct: 2 IVAPSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKG-IFKINENSGEVS 60
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ + LD E + S+ L V+ TD+ + + + ++V D
Sbjct: 61 VTKALDREAIPSYQLQVETTDEN---GKTIEGPVDLEILVID 99
Score = 60.8 bits (148), Expect = 7e-12
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 64 EIKE--DVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVA 120
I E +P VG VV +D L + G F I+++SG + V
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDR-----IPGSKIKLYGKGVDQEPKGIFKINENSGEVSVT 62
Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
+ LDRE P Y+L+V D + V ++I ++D
Sbjct: 63 KALDREAIPSYQLQVETTD--ENGKTIEGPVDLEILVID 99
Score = 60.5 bits (147), Expect = 1e-11
Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 285 IYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
I + E R V ++ D+ G ++ F ++ + G +S+ + +
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKAL- 65
Query: 343 EYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ + ++ L + +D + + I
Sbjct: 66 DREAIPSYQ--LQVETTDENGKTIEGPVDLEI 95
Score = 59.7 bits (145), Expect = 2e-11
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 427 VSEDAIP--GTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGV 484
+ E+ + +VV L +FKI+ +G
Sbjct: 9 IPENQRIPFPKIVGRVVVSDRIPGSK----------IKLYGKGVDQEPKGIFKINENSGE 58
Query: 485 VTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILD 524
V++ ++LDRE + Y L V TD ++ I ++D
Sbjct: 59 VSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 74.0 bits (182), Expect = 2e-16
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVADDMFK 477
V+ + F++ E + + SD + + Y++ A +F
Sbjct: 4 VWNQFFVLEEYTGTDPLYVGKLH-------------SDMDRGDGSIKYILSGEGAGIVFT 50
Query: 478 IDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--YDTTNVFITILD 524
ID TG + + LDRE QY L D ++G + I I D
Sbjct: 51 IDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 65.1 bits (159), Expect = 2e-13
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
W N + E T +D D G +G ++Y L + G F++D TG +
Sbjct: 3 WVWNQFFVL-EEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEG-AGIVFTIDDTTGDIH 59
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+Q LD E + + L + D+ + + ++D
Sbjct: 60 AIQRLDREERSQYTLRAQALDRRTGRP--MEPESEFIIKIQD 99
Score = 64.7 bits (158), Expect = 3e-13
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE 126
E + +D G G + Y L+ F ID ++G + ++LDRE
Sbjct: 13 EYTGTDPLYVGKLHSDMDR--GDGSIKYILSG---EGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
+Y L +ALD T P I+I D
Sbjct: 68 ERSQYTLRAQALDRRT-GRPMEPESEFIIKIQD 99
Score = 52.8 bits (127), Expect = 5e-09
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 285 IYVSE-QTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
+V E T D D G +G + Y++SG F +D G + + + +
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRL-D 65
Query: 344 YDHQSKFRAVLNITASDHGIPP---KSSSLVINIL 375
+ +S++ L A D S +I I
Sbjct: 66 REERSQYT--LRAQALDRRTGRPMEPESEFIIKIQ 98
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 72.5 bits (178), Expect = 6e-16
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKID 479
V+ ++F++ E + P ++ + D + Y++ A +F+I+
Sbjct: 3 VWNQMFVLEEFSGPEPILVGRLHTDL-----------DPGSKKIKYILSGDGAGTIFQIN 51
Query: 480 AETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY--DTTNVFITILD 524
TG + + LDRE +Y L D ++ + I + D
Sbjct: 52 DITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 63.6 bits (155), Expect = 8e-13
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
W N + + + TD D G + +++Y L G F ++ +TG +
Sbjct: 2 WVWNQMFVLEEFSGPEPILV-GRLHTDLDPG-SKKIKYILSGD-GAGTIFQINDITGDIH 58
Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
++ LD E + L + D ++ L + V+D
Sbjct: 59 AIKRLDREEKAEYTLTAQAVDF--ETNKPLEPPSEFIIKVQD 98
Score = 61.3 bits (149), Expect = 5e-12
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 65 IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
+ E+ + V + G + Y L+ F I+ +G + ++LD
Sbjct: 9 VLEEFSGPEPI-LVGRLHTDLDPGSKKIKYILSG---DGAGTIFQINDITGDIHAIKRLD 64
Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
RE EY L +A+D T+ P I++ D
Sbjct: 65 REEKAEYTLTAQAVDFETNK-PLEPPSEFIIKVQD 98
Score = 49.3 bits (118), Expect = 8e-08
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 287 VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDH 346
+ E + + D D G + ++ Y++SG F ++ G + + + + +
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRL-DREE 67
Query: 347 QSKFRAVLNITASDHGIPP---KSSSLVINIL 375
++++ L A D S +I +
Sbjct: 68 KAEYT--LTAQAVDFETNKPLEPPSEFIIKVQ 97
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 71.7 bits (176), Expect = 1e-15
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 171 PLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
P+ IP N+ ++ ++ +G+ L V Q P+G F ++ ++G +++ +P
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKG-IFRINEISGDVSVTRP 64
Query: 231 LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
LD E + ++ L V+VTD + I + + + V D
Sbjct: 65 LDREAIANYELEVEVTDLSGKI---IDGPVRLDISVID 99
Score = 61.3 bits (149), Expect = 5e-12
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 64 EIKE--DVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVA 120
I E P +VG V+ ++ G + L+ D G F I++ SG + V
Sbjct: 8 LIPENQRPPFPRSVGKVIRSE-----GTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT 62
Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
R LDRE Y+LEV D S V + I ++D
Sbjct: 63 RPLDREAIANYELEVEVTD--LSGKIIDGPVRLDISVID 99
Score = 59.7 bits (145), Expect = 2e-11
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 461 YNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVF 519
+ L+ +F+I+ +G V++ R LDRE + Y L V VTD D +
Sbjct: 35 FRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLD 94
Query: 520 ITILD 524
I+++D
Sbjct: 95 ISVID 99
Score = 57.0 bits (138), Expect = 2e-10
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 285 IYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
I + E R V K+ + G R++ + F ++ G +S+ R +
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPL- 65
Query: 343 EYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ + + + L + +D + ++I
Sbjct: 66 DREAIANYE--LEVEVTDLSGKIIDGPVRLDI 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 4e-10
Identities = 82/527 (15%), Positives = 165/527 (31%), Gaps = 141/527 (26%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGA---FDID 111
F ++ +D+P +++S + H++ +S SG F
Sbjct: 28 AFVDNFDCKDV-QDMP-----KSILSKEEID-----HII-----MSKDAVSGTLRLFWTL 71
Query: 112 KSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDV--NDNAPRWGE 169
S +V + ++ YK + + T S + IE D NDN
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVF--- 126
Query: 170 NPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTG----TL 225
+ + L +LR L+ P N +D + G +
Sbjct: 127 AKYNVSRLQPYL-------------------KLRQALLELRPAKN-VLIDGVLGSGKTWV 166
Query: 226 TLLQPLDYETLTSF---ILVVKV---------TDQAANISERLSTSLTARVVVKDLNDNA 273
L L Y+ I + + + + ++ + T+R D + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS---DHSSNI 223
Query: 274 PVFVSPTRGSL-IYVSEQTRVGS-----HVTKMTAVD------------QDSGDNGRVTY 315
+ + + L + + +V A + + VT
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ----VTD 279
Query: 316 VISGGNEDARFHLDHDKGILSLARVISEYDHQSK--FRAVLNITASDHGIPP---KSSSL 370
+S LDH L+ + K L+ D +P ++
Sbjct: 280 FLSAATT-THISLDHHSMTLT--------PDEVKSLLLKYLDCRPQD--LPREVLTTNPR 328
Query: 371 VINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIK--VVARSPSTYGNYVYTEVFLVS 428
++I++E++ L T+ +V+ D + T II+ + P+ Y + + +
Sbjct: 329 RLSIIAESIRDGLATW---DNWKHVNCDKL--TTIIESSLNVLEPAEYRKM-FDRLSVFP 382
Query: 429 EDA-IPGTYIIKVVAR--SPSTYVYHMYLISDFSGYNL--------TYMIPAGVADDMFK 477
A IP +++ M +++ Y+L T IP+ + K
Sbjct: 383 PSAHIP----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 478 IDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILD 524
++ E +L R VD YN+ +D+ ++ LD
Sbjct: 439 LENE-------YALHRSIVDHYNIPKT--------FDSDDLIPPYLD 470
Score = 41.4 bits (96), Expect = 8e-04
Identities = 67/423 (15%), Positives = 121/423 (28%), Gaps = 171/423 (40%)
Query: 29 FKKYLSNNEVC-PKQIFTSTP-----------NMVSRCKFKKYLSNNEIKEDVPIGFTVG 76
KYL P+++ T+ P + ++ K+++ +++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT--------- 357
Query: 77 NVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVR 136
++ + SL L P ++ FD L V P
Sbjct: 358 -IIES-------------SLNVLEPAEYRKMFD------RLSVF--------PP------ 383
Query: 137 ALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIW-NFTATDAD 195
+ IP L S IW + +D
Sbjct: 384 ----------------------SAH------------IP--TILL--SLIWFDVIKSDVM 405
Query: 196 DGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYE-TLTSFILVVKVTDQAANISE 254
N +Y LV + P+ + S+ + L L L+ E L I+ NI +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIV------DHYNIPK 457
Query: 255 RLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQ-DSGDNGRV 313
D +D P P Y + +G H + ++ + R+
Sbjct: 458 TF-----------DSDDLIP----PYLDQYFY----SHIGHH---LKNIEHPERMTLFRM 495
Query: 314 TYVISGGNEDARF---HLDHDK-------GILSLARVISEY-DHQSKFRAVLNITASDHG 362
++ D RF + HD IL+ + + Y + I +D
Sbjct: 496 VFL------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---------ICDND-- 538
Query: 363 IPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYT 422
PK LV IL FL P N+ T ++++ + ++
Sbjct: 539 --PKYERLVNAIL---------DFL-PKIEENLICS--KYTDLLRIALMAED---EAIFE 581
Query: 423 EVF 425
E
Sbjct: 582 EAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 5e-10
Identities = 111/603 (18%), Positives = 187/603 (31%), Gaps = 202/603 (33%)
Query: 4 RCKFKKYL--------SNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSR-- 53
+ +F K L +++E T+ +V + F Y+S+ V P ++ + V
Sbjct: 34 QEQFNKILPEPTEGFAADDE-PTTPAELVGK--FLGYVSS-LVEPSKV--GQFDQVLNLC 87
Query: 54 -CKF-KKYLSNNEI---------KEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPT 102
+F YL N+I + D + ++ T R
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLV-KTKELIKNYITARIMAKR------PFDKK 140
Query: 103 DHSGAFDIDKSSGSLVVAR---QLDRETC-PE-------YKLEVRALDTSTSSN----PQ 147
+S F + +VA Q + + E Y + V L ++ +
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 148 SSAVAIKI--EIVDVNDNAPRWGENPLTIPVNEDTLVGSTI-W---------NFTATDAD 195
++ A K+ + +++ + W ENP P ++D L+ I ++ T
Sbjct: 201 TTLDAEKVFTQGLNILE----WLENPSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 196 DGSN-GELRYGLVRQYPEGNHFSVDHLTGTLTLLQPL-------------DYETLTS--- 238
G GELR +L G Q L +
Sbjct: 256 LGFTPGELR---------------SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 239 ---FILVVKVTDQAANISERLSTSLTARVVVKDLNDN--APVFVSPTRGSLIYVS--EQT 291
F + V+ + N TSL ++ L +N P SP ++ +S Q
Sbjct: 301 TVLFFIGVRCYEAYPN------TSLPPSILEDSLENNEGVP---SP----MLSISNLTQE 347
Query: 292 RVGSHVTKMTAVDQDSGD------NGRVTYVISGGNEDARFHLDHDKGILSLARVISEYD 345
+V +V K + NG V+SG + L L A+ S D
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS----LYGLNLTLRKAKAPSGLD 403
Query: 346 HQSK--F--RAV------LNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANV 395
QS+ F R + L + + H S L L + + N
Sbjct: 404 -QSRIPFSERKLKFSNRFLPVASPFH------SHL----LVPASDLINKDLVKNNVSFNA 452
Query: 396 SEDAIPGTYIIKVVARSPSTYGNYVY-TE----VFLVSEDAIPGTYIIKVVARSPSTYVY 450
+ IP VY T + ++S I+ + R P V
Sbjct: 453 KDIQIP------------------VYDTFDGSDLRVLSGSISER--IVDCIIRLP---VK 489
Query: 451 ----------HMYLISDFSGYNLTYMIPAGVAD--DMFKIDAE-TGV-VTLARSLDRETV 496
H I DF G P G + + + + TGV V +A +LD
Sbjct: 490 WETTTQFKATH---ILDF-G-------PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 497 DQY 499
D Y
Sbjct: 539 DDY 541
Score = 57.0 bits (137), Expect = 1e-08
Identities = 93/580 (16%), Positives = 169/580 (29%), Gaps = 164/580 (28%)
Query: 94 YSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAI 153
YS L+ + S + + S +A QL +E K+ + + + ++
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQL-QEQF--NKILPEPTEGFAADDEPTT---- 56
Query: 154 KIEIV---------DVNDNAPRWGENPLTIPVNE---DTLVGSTIWNFTAT-DADDGSNG 200
E+V V + + L + + E L G+ I A ++ +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 201 ELRYGLVRQYPEGNHFSVDHLT-------------GTLTL----------------LQPL 231
L++ Y + G L L+ L
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 232 DYETLTSFILVVKVTDQAANISERLSTSL--TARVVVKDLN--------DNAP------- 274
Y+T V + +A L + +V + LN N P
Sbjct: 177 -YQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 275 VFVS-PTRGSLI-------YVSEQTRVGSHVTKMTAVDQDSGDNGRVTYV-----ISGGN 321
+ +S P LI YV +G ++ G G + I+ +
Sbjct: 234 IPISCP----LIGVIQLAHYVVTAKLLGFTPGEL--RSYLKGATGHSQGLVTAVAIAETD 287
Query: 322 EDARFHLDHDKGILSL----ARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILS- 376
F + K I L R Y + S + + ++ S L I+ L+
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 377 -------ETVSTSLPTFLSPSYHANVS----EDAIPGTYIIKVVARSPST-YGNYVYTEV 424
++ LP +S + VV+ P + YG +
Sbjct: 347 EQVQDYVNKTNSHLP----AGKQVEISLVNGAKNL-------VVSGPPQSLYG----LNL 391
Query: 425 FLVSEDAIPGTYIIKVV--ARSPSTYVYHMYL-ISDFSGYNLTYMIPA--GVADDM---- 475
L A G ++ R + +L ++ S ++ ++PA + D+
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLK--FSNRFLPVA--SPFHSHLLVPASDLINKDLVKNN 447
Query: 476 -------FKI---DAETGVV--TLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVF-IT- 521
+I D G L+ S+ VD + + V ++TT F T
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC-IIRLPV------KWETTTQFKATH 500
Query: 522 ILDVNDNAPEFKSGSCYPIT--IPENSEAANVHTFIATDF 559
ILD F G + N + V +A
Sbjct: 501 ILD-------FGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 40.4 bits (94), Expect = 0.002
Identities = 53/320 (16%), Positives = 90/320 (28%), Gaps = 128/320 (40%)
Query: 233 YETLTSFILVVKVTDQA-ANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQT 291
Y+T V ++A + + S+ +V + N + +G I
Sbjct: 1636 YKT---SKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHFGGEKGKRIR----- 1685
Query: 292 RVGSHVTKMTAVDQDSGDNGRVTY--VISGGNEDAR-FHLDHDKGILSL------ARVIS 342
+ + M ++ +G++ + NE + + +KG+LS A +
Sbjct: 1686 ---ENYSAMIF---ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 343 EYDHQSKFRAVLNITASDHGIPPKSS----SLVINILSETVSTSLPTFLSPSYHANVS-- 396
E A S IP ++ SL E Y A S
Sbjct: 1740 EK-------AAFEDLKSKGLIPADATFAGHSL-----GE-------------YAALASLA 1774
Query: 397 -----EDAIPGTYIIKVV-ARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVY 450
E + +VV R G + + A+P + RS Y
Sbjct: 1775 DVMSIESLV------EVVFYR-----GMTM--------QVAVPRDE----LGRSN----Y 1807
Query: 451 HMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS 510
M I+ P VA S +E + VV ++
Sbjct: 1808 GMIAIN-----------PGRVA----------------ASFSQEALQY---VVERVGKRT 1837
Query: 511 GDYDTTNVFITILDVNDNAP 530
G + I VN N
Sbjct: 1838 GW------LVEI--VNYNVE 1849
Score = 40.0 bits (93), Expect = 0.002
Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 104/290 (35%)
Query: 115 GSLVVARQLD-RETCPEYKLEV--RALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENP 171
GS +D +T + +V RA D S ++IV NP
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQ-DVWNRA-DNHFKDTYGFSI----LDIVI---------NNP 1669
Query: 172 LTIPVNEDTLVGSTIW-NFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
+ + ++ G I N++A + +G+L+ + + E ++ + + T
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI--FKE-----INEHSTSYTFRSE 1722
Query: 231 LDYETLTSF----ILVV-------------KVTDQA------------ANISERLSTSLT 261
+ T F + ++ D A++++ +S
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 262 ARVVVKDLNDNAPVFVSPTRGSLIYVS-EQTRVGSHVTKMTAVD---------------- 304
VV RG + V+ + +G M A++
Sbjct: 1783 VEVVFY-------------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 305 -----QDSG-------DN--GRVTYVISGGNEDARFHLDHDKGILSLARV 340
+ +G N + YV +G LD +L+ ++
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQ-QYVAAGDLRA----LDTVTNVLNFIKL 1874
Score = 37.0 bits (85), Expect = 0.019
Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 52/188 (27%)
Query: 1 MVSRCKFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNM--VSRCKFKK 58
M+ L +IF + F+ S + FT P + + + F+
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFR---SEKGLLSATQFTQ-PALTLMEKAAFE- 1745
Query: 59 YLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSL---TSLSPTDHSGAFDIDKSSG 115
++K G + AG H SL +L+ + I+ S
Sbjct: 1746 -----DLKSK---GLIPADATF------AG--H---SLGEYAALASL--ADVMSIE-SLV 1783
Query: 116 SLVVAR-QLDRETCPEYKLEVRALDTS-TSSNPQSSAVAIKIEIVD-------------- 159
+V R + P + E+ + + NP A + E +
Sbjct: 1784 EVVFYRGMTMQVAVP--RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 160 --VNDNAP 165
VN N
Sbjct: 1842 EIVNYNVE 1849
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 48.4 bits (116), Expect = 4e-07
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 28/123 (22%)
Query: 65 IKEDVPIGFTVGNV-------VSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
+ E+ G VGN+ + T A + S +++ SG+L
Sbjct: 17 VLEETDRGSLVGNLAKDLGLSLRELITRGA-------QILSKGNKQL---LQLEQKSGNL 66
Query: 118 VVARQLDRET-C---PEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR--WGENP 171
++ +LDRE C L + L +P + +I++ DVND+AP E+
Sbjct: 67 LLKEKLDREELCGSTNPCILHFQVL----LKSP-VQFIQGEIQLQDVNDHAPEFMEDESG 121
Query: 172 LTI 174
+
Sbjct: 122 PSS 124
Score = 39.5 bits (93), Expect = 4e-04
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSN-GELRYGLVRQYPEGN--HFSVDHLTGTLTLLQPLD 232
V E+T GS + N D G + EL + +GN ++ +G L L + LD
Sbjct: 17 VLEETDRGSLVGNLAK---DLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLD 73
Query: 233 YETL----TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
E L IL +V + + + + ++D+ND+AP F
Sbjct: 74 REELCGSTNPCILHFQV------LLKSPVQFIQGEIQLQDVNDHAPEF 115
Score = 38.0 bits (89), Expect = 0.001
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 20/68 (29%)
Query: 476 FKIDAETGVVTLARSLDRET--------VDQYNLVVHVTDSKSGDYDTTNVF---ITILD 524
+++ ++G + L LDRE + + +++ I + D
Sbjct: 57 LQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLK---------SPVQFIQGEIQLQD 107
Query: 525 VNDNAPEF 532
VND+APEF
Sbjct: 108 VNDHAPEF 115
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 43.3 bits (103), Expect = 1e-05
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 30/112 (26%)
Query: 65 IKEDVPIGFTVGNV-------VSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
I E+ G VG + ++ + S D +++ +G L
Sbjct: 9 IPEEAKHGTFVGRIAQDLGLELTELVPRLF-------RVASKDRGDL---LEVNLQNGIL 58
Query: 118 VVARQLDRET-CPE-----YKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDN 163
V ++DRE C LEV P +++E+ D+NDN
Sbjct: 59 FVNSRIDREELCGRSAECSIHLEVIV------DRP-LQVFHVEVEVRDINDN 103
Score = 29.9 bits (68), Expect = 0.56
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 14/103 (13%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN--HFSVDHLTGTLTLLQPLDY 233
+ E+ G+ + A D EL L R + V+ G L + +D
Sbjct: 9 IPEEAKHGTFVGRI-AQDLGLEL-TELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDR 66
Query: 234 ETL----TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDN 272
E L + ++V I +R V V+D+NDN
Sbjct: 67 EELCGRSAECSIHLEV------IVDRPLQVFHVEVEVRDINDN 103
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 30.8 bits (69), Expect = 1.6
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 130 EYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDN-APRWGENPLTIPVNEDTLVGSTIWN 188
Y VR S+ + Q + + + DN P + T
Sbjct: 797 TYTYRVRYTPISSGAKEQHTDFDVIV------DNTTPE-----VATSATFSTEDRRLTLA 845
Query: 189 FTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSF-----ILVV 243
+ + Y + + + + GT TL + + +
Sbjct: 846 SKPKTSQPVYRERIAYTYMDEDLPTTEYISPNEDGTFTLPEEAETMEGATVPLKMSDFTY 905
Query: 244 KVTDQAANISE 254
V D A NI+
Sbjct: 906 VVEDMAGNITY 916
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam
antibiotic, oxygenase, penicillin biosynthesis,
oxidoreductase, iron; HET: ASV; 1.15A {Emericella
nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A*
1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A*
1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A*
1w06_A* 1w3v_A* 1w3x_A* ...
Length = 331
Score = 30.0 bits (68), Expect = 1.9
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 22/80 (27%)
Query: 361 HGIPPKSSSLVINI------LS--ETVST------------SLPTFLSPSYHANVSEDAI 400
I + +IN L+ + SLP F++ Y + + D
Sbjct: 240 QDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVI--DPF 297
Query: 401 PGTYIIKVVARSPSTYGNYV 420
R P +YG+Y+
Sbjct: 298 DPREPNGKSDREPLSYGDYL 317
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint
center for structural genomics, J protein structure
initiative; 2.20A {Shewanella oneidensis}
Length = 280
Score = 29.9 bits (68), Expect = 2.2
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 371 VINILSETVST---SLPTFLSPSYHANVSEDAIPGTYIIK 407
VIN + SLP FL P +SE +Y+++
Sbjct: 233 VINPEGTDKTKSRISLPLFLHPHPSVVLSERYTADSYLME 272
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 28.8 bits (65), Expect = 6.0
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 10 YLSNNEIFTSTPNMVSRCKFKK----YLSNNEVCPKQIFTSTPNMVSRCK--FKKYLSNN 63
LSNN+I + LS+N QI +P F +L+N
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSN-----QIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 64 EIKEDVPIGFTVG 76
++ + +
Sbjct: 206 QLGPSLTEKLCLE 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,433,851
Number of extensions: 515254
Number of successful extensions: 1646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 182
Length of query: 570
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 471
Effective length of database: 3,937,614
Effective search space: 1854616194
Effective search space used: 1854616194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)