RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8639
(570 letters)
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 56.9 bits (136), Expect = 1e-10
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH 220
NDNAP + T V E+ +G + + TD D + + EG F++
Sbjct: 2 NDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 221 LTGT----LTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ LT + LD+E ++L + V + +++ T V V+D
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
Score = 40.4 bits (93), Expect = 6e-05
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 42/146 (28%)
Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
P F +Y A V E+ G + ++ G +
Sbjct: 6 PIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQA-------------------- 44
Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVV 503
+ G + ++ G++T A+ LD E QY L +
Sbjct: 45 -----------------VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQI 87
Query: 504 HVTDSKSGD----YDTTNVFITILDV 525
V +++ T V +T+ DV
Sbjct: 88 TVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 39.2 bits (90), Expect = 2e-04
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDH-SGAFDIDKS 113
F + E+ IGF V + TD ++ + D + +
Sbjct: 7 IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 65
Query: 114 SGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDV 160
G L A+ LD E +Y L++ + S P ++ A + + + DV
Sbjct: 66 QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 38.8 bits (89), Expect = 2e-04
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVD-QDSGDNGRVTYVISGGNEDARFHL 328
NDNAP+F T V E +G V +++ D G NE F++
Sbjct: 2 NDNAPIFDPKT--YTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 58
Query: 329 DHDKGILSLARVISEYDHQSKFRA-VLNITASD---HGIPPKSSSLVINI 374
D ++ + VL IT + +P +S+ + +
Sbjct: 59 TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTV 108
Score = 33.8 bits (76), Expect = 0.012
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 526 NDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
NDNAP F + Y +PEN V TD
Sbjct: 2 NDNAPIFDPKT-YTALVPENEIGFEVQRLSVTD 33
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 56.3 bits (135), Expect = 1e-10
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN---HFSVDHLTG 223
W P++ P NE + ++ G++ Y + Q + F ++ TG
Sbjct: 5 WVIPPISCPENEKGPFPKNL---VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETG 61
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
L + +PLD E + ++ L + + + V D
Sbjct: 62 WLKVTEPLDRERIATYTLFSHAVSSN---GNAVEDPMEILITVTD 103
Score = 53.6 bits (128), Expect = 1e-09
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
I E + G + + + G+V Y I+G D F ++ + G L +
Sbjct: 10 ISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 68
Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ + A + I I
Sbjct: 69 LDRERIATYTL---FSHAVSSNGNAVEDPMEILI 99
Score = 40.5 bits (94), Expect = 5e-05
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPT-DHSGAFDIDKSSGSLVVARQ 122
E+ F N+V S G V YS+T G F I++ +G L V
Sbjct: 11 SCPENEKGPF-PKNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEP 68
Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
LDRE Y L A+ ++ N + I I + D
Sbjct: 69 LDRERIATYTLFSHAVS--SNGNAVEDPMEILITVTD 103
Score = 37.4 bits (86), Expect = 5e-04
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 444 SPSTYVYHMYLISDFSGYN--LTYMIPAGVAD----DMFKIDAETGVVTLARSLDRETVD 497
+ ++ I + Y I AD +F I+ ETG + + LDRE +
Sbjct: 16 EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIA 75
Query: 498 QYNLVVHVTDSKSGD-YDTTNVFITILD 524
Y L H S D + IT+ D
Sbjct: 76 TYTLFSHAVSSNGNAVEDPMEILITVTD 103
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 56.3 bits (134), Expect = 2e-10
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGD---NGRVTYVISGGNEDAR- 325
NDN P F V+E G+ V K++A D D N + Y I + +
Sbjct: 1 NDNRPEFTQEV--FEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPH 58
Query: 326 ---FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
F ++ D G++S+ + + + L + A+D S++ I
Sbjct: 59 KNMFTVNRDTGVISVLTSGLDRESYPTYT--LVVQAADLQGEGLSTTAKAVI 108
Score = 49.7 bits (117), Expect = 3e-08
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGLVRQYPEGNH-- 215
NDN P + + V E + G+++ +ATDADD N + Y +V Q PE H
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 216 -FSVDHLTGTLTLLQPL-DYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
F+V+ TG +++L D E+ ++ LVV+ D E LST+ A + VKD
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQ---GEGLSTTAKAVITVKD 112
Score = 39.7 bits (91), Expect = 9e-05
Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 37/143 (25%)
Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
P F + +V+E A+PGT ++KV A N +
Sbjct: 5 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA------------------ 46
Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSL-DRETVDQYNLV 502
Y + P +MF ++ +TGV+++ S DRE+ Y LV
Sbjct: 47 -----------------YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLV 89
Query: 503 VHVTDSKS-GDYDTTNVFITILD 524
V D + G T IT+ D
Sbjct: 90 VQAADLQGEGLSTTAKAVITVKD 112
Score = 31.6 bits (70), Expect = 0.066
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSP-TDHSGAFDID 111
+F + + + E G +V V +TD+ + Y++ S P H F ++
Sbjct: 6 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 65
Query: 112 KSSGSLVVARQLD-RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
+ +G + V RE+ P Y L V+A D S+ I + D
Sbjct: 66 RDTGVISVLTSGLDRESYPTYTLVVQAAD--LQGEGLSTTAKAVITVKD 112
Score = 28.9 bits (63), Expect = 0.59
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 526 NDNAPEFKSGSCYPITIPENS 546
NDN PEF + ++ E +
Sbjct: 1 NDNRPEFTQEV-FEGSVAEGA 20
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 55.5 bits (133), Expect = 2e-10
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHD 331
+V P I VSE R G ++ + + +V Y I+G D F ++ +
Sbjct: 2 WVIPP----IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 56
Query: 332 KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
G V D + + VL+ A P + I I
Sbjct: 57 TGW---MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITI 96
Score = 53.6 bits (128), Expect = 1e-09
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEG---NHFSVDHLTG 223
W P+ + NE G ++ ++ Y + Q + F ++ TG
Sbjct: 2 WVIPPIKVSENER---GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 58
Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
+ + +PLD E ++L + + + + V D
Sbjct: 59 WMLVTRPLDREEYDKYVLSSHAVSEN---GSPVEEPMEITINVID 100
Score = 42.1 bits (98), Expect = 1e-05
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDH-SGAFDIDKSSGSLVVARQ 122
++ E+ F +V S + V YS+T + G F I+ +G ++V R
Sbjct: 8 KVSENERGPF-PKRLVQIKSN-KDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65
Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
LDRE +Y L A+ + +P + I I ++D
Sbjct: 66 LDREEYDKYVLSSHAVS--ENGSPVEEPMEITINVID 100
Score = 36.7 bits (84), Expect = 0.001
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 427 VSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM----FKIDAET 482
VSE+ G + ++V + + Y I AD+ F+I+ ET
Sbjct: 9 VSENE-RGPFPKRLVQIKSN----------KDRFNKVYYSITGQGADNPPQGVFRIEWET 57
Query: 483 GVVTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILD 524
G + + R LDRE D+Y L H + + I ++D
Sbjct: 58 GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 55.4 bits (132), Expect = 3e-10
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 162 DNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHL 221
+ AP + + V+ED G I + A D D +L Y +V+
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY--FIGNDPARWLTVNKD 58
Query: 222 TGTLTLLQPLDYETLT----SFILVVKVTDQAANISERLSTSLTARVVVKD 268
G +T LD E+ ++ +++ VTD + + T + V D
Sbjct: 59 NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLD 106
Score = 55.0 bits (131), Expect = 4e-10
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 271 DNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDH 330
+ AP FV S + VSE G + + A D D +++Y I
Sbjct: 1 NEAPFFVPAV--SRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKD 58
Query: 331 DKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
+ + + E ++ + + +D G+ + + + +
Sbjct: 59 NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLIL 102
Score = 45.0 bits (105), Expect = 1e-06
Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 48/147 (32%)
Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
P F+ +VSED G II +VA+ P
Sbjct: 4 PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL---------------------- 41
Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV----DQY 499
++ + G+VT +LDRE+ + Y
Sbjct: 42 ---------------------SYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY 80
Query: 500 NLVVHVTDS-KSGDYDTTNVFITILDV 525
+++ VTD S T + + +LDV
Sbjct: 81 TVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 43.4 bits (101), Expect = 5e-06
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS 114
F +S ++ ED+ G + ++V+ D + + D + ++K +
Sbjct: 5 FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-----DPARWLTVNKDN 59
Query: 115 GSLVVARQLDRET----CPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDV 160
G + LDRE+ Y + + D S + + + ++DV
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS--VGTGTGTLILHVLDV 107
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 54.7 bits (130), Expect = 5e-10
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG--SNGELRYGLVRQYPEGNH--- 215
NDN P + V E + G+ + TA DADD NG LRY +V Q P
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 216 FSVDHLTGTL-TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
F++++ TG + T+ LD E + + L+++ TD N + LS + TA + V D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 47.4 bits (111), Expect = 2e-07
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGD--NGRVTYVISGGN----ED 323
NDN P F+ V E ++ G++V +TA+D D + NG + Y I
Sbjct: 1 NDNRPEFLHQVW--NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSP 58
Query: 324 ARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPK---SSSLVINI 374
F ++++ G + + + ++ L I A+D P S++ I
Sbjct: 59 NMFTINNETGDIITVAAGLDREKVQQYT--LIIQATDMEGNPTYGLSNTATAVI 110
Score = 42.0 bits (97), Expect = 2e-05
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 41/146 (28%)
Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
P FL ++ +V E + PGTY++ V A
Sbjct: 5 PEFLHQVWNGSVPEGSKPGTYVMTVTA--------------------------------- 31
Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETG-VVTLARSLDRETVDQYNLV 502
++ Y + P+ + +MF I+ ETG ++T+A LDRE V QY L+
Sbjct: 32 ---IDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLI 88
Query: 503 VHVTDS----KSGDYDTTNVFITILD 524
+ TD G +T IT+ D
Sbjct: 89 IQATDMEGNPTYGLSNTATAVITVTD 114
Score = 36.6 bits (83), Expect = 0.001
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTG--RAGGGHVMYSLTSLSPTDHSGAFDIDK 112
+F + N + E G V V + D+ G ++ T F I+
Sbjct: 6 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINN 65
Query: 113 SSGSLVVARQLD-RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVND 162
+G ++ RE +Y L ++A D + S A ++ V D
Sbjct: 66 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA--TAVITVTD 114
Score = 32.0 bits (71), Expect = 0.062
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 526 NDNAPEFKSGSCYPITIPENSEA-ANVHTFIATDFGNFHKSF 566
NDN PEF + ++PE S+ V T A D + +
Sbjct: 1 NDNRPEFLHQV-WNGSVPEGSKPGTYVMTVTAIDADDPNALN 41
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 50.8 bits (120), Expect = 1e-08
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSG---DNGRVTYVISGGNEDAR- 325
NDN P F V E + G+ V ++A D+D NG ++Y I + +
Sbjct: 2 NDNRPKFTQDV--FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPI 59
Query: 326 ---FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
F ++ + G++SL + + ++ L + A+D S I
Sbjct: 60 PNLFTINRETGVISLIGTGLDREKFPEYT--LTVQATDLEGAGLSVEGKAII 109
Score = 49.7 bits (117), Expect = 3e-08
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDAD---DGSNGELRYGLVRQYPEG---N 214
NDN P++ ++ V E G+ + +ATD D D NG L Y +++Q PE N
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 215 HFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
F+++ TG ++L+ LD E + L V+ TD LS A + + D
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLE---GAGLSVEGKAIIQITD 113
Score = 44.3 bits (103), Expect = 3e-06
Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 37/143 (25%)
Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
P F + +V E PGT ++ V A + + +
Sbjct: 6 PKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS------------------ 47
Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVT-LARSLDRETVDQYNLV 502
Y++ P ++F I+ ETGV++ + LDRE +Y L
Sbjct: 48 -----------------YSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLT 90
Query: 503 VHVTDSKSGD-YDTTNVFITILD 524
V TD + I I D
Sbjct: 91 VQATDLEGAGLSVEGKAIIQITD 113
Score = 35.4 bits (80), Expect = 0.003
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLS---PTDHSGAFDID 111
KF + + ++E V G V V +TD + + S + L F I+
Sbjct: 7 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 66
Query: 112 KSSGSL-VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
+ +G + ++ LDRE PEY L V+A D S I+I D
Sbjct: 67 RETGVISLIGTGLDREKFPEYTLTVQATD--LEGAGLSVEGKAIIQITD 113
Score = 29.6 bits (65), Expect = 0.40
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 526 NDNAPEFKSGSCYPITIPENSEA-ANVHTFIATDFGNFH 563
NDN P+F + ++ E + V ATD +
Sbjct: 2 NDNRPKFTQDV-FRGSVREGVQPGTQVMAVSATDEDDNI 39
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 50.2 bits (119), Expect = 2e-08
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
I + E +R G ++ + N + Y ++G D F ++ G V
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQ---LSV 64
Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
D + R L A D + + I I
Sbjct: 65 TKPLDRELIARFHLRAHAVDINGNQVENPIDIVI 98
Score = 49.5 bits (117), Expect = 4e-08
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN---HFSVDH 220
W P+ +P N G + N LRY + + F ++
Sbjct: 1 GSDWVIPPINLPENSR---GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINP 57
Query: 221 LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
++G L++ +PLD E + F L D ++ + + V D
Sbjct: 58 ISGQLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVID 102
Score = 40.6 bits (94), Expect = 4e-05
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
+ E+ F +V S + +G F I+ SG L V + L
Sbjct: 10 NLPENSRGPF-PQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
DRE + L A+D + N + + I I ++D
Sbjct: 69 DRELIARFHLRAHAVD--INGNQVENPIDIVINVID 102
Score = 35.2 bits (80), Expect = 0.003
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 444 SPSTYVYHMYLISDFSGYN--LTYMIPAGVAD----DMFKIDAETGVVTLARSLDRETVD 497
S + + I N L Y + AD +F I+ +G +++ + LDRE +
Sbjct: 15 SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74
Query: 498 QYNLVVHVTDSKSGD-YDTTNVFITILD 524
+++L H D + ++ I ++D
Sbjct: 75 RFHLRAHAVDINGNQVENPIDIVINVID 102
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 47.3 bits (111), Expect = 5e-07
Identities = 14/122 (11%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 425 FLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGV 484
++ +D G ++ V + + Y S+ + + +
Sbjct: 20 AVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDG----------------T 63
Query: 485 VTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPE 544
V RS +Q +++ D ++ + V ++ P + I P
Sbjct: 64 VYAVRSFPLTA-EQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPR 122
Query: 545 NS 546
Sbjct: 123 QL 124
Score = 46.5 bits (109), Expect = 7e-07
Identities = 11/134 (8%), Positives = 39/134 (29%), Gaps = 12/134 (8%)
Query: 159 DVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV 218
++ + E+ + + +D G + N ++ + R V+
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN-------RKRKVQYESSEPADFK 57
Query: 219 DHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS 278
GT+ ++ + L+ A + + + + + P+
Sbjct: 58 VDEDGTVYAVRSFPLTAEQAKFLIY-----AQDKETQEKWQVAVNLSREPTLTEEPMKEP 112
Query: 279 PTRGSLIYVSEQTR 292
+++ + +
Sbjct: 113 HEIEEIVFPRQLAK 126
Score = 30.0 bits (66), Expect = 0.38
Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
+ +DV G + NV ++ + + A G++ R
Sbjct: 21 VLPKDVHEGQPLLNVKFSNCNRKRKVQYES----------SEPADFKVDEDGTVYAVRSF 70
Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAP 165
+ K + A + VA+ + P
Sbjct: 71 PLT-AEQAKFLIYA---QDKETQEKWQVAVNLSREPTLTEEP 108
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 45.1 bits (105), Expect = 1e-06
Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 10/115 (8%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH 220
NDN P T+ T +DAD N + + +
Sbjct: 1 NDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 221 LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
GT LL P + + V ++D ++ V A
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSD-----AQNNPQLTVVNATVCSCEGKAIK 105
Score = 41.2 bits (95), Expect = 3e-05
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%)
Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLD 329
NDN PV + +Q +T D D N V D + +
Sbjct: 1 NDNGPVPSPRV----FTMCDQN---PEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAE 53
Query: 330 HDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINIL 375
D S+ ++ + + + SD P+ + + +
Sbjct: 54 LDSKGTSMLLSPTQQLKKGDYSIY--VLLSDAQNNPQLTVVNATVC 97
Score = 32.7 bits (73), Expect = 0.025
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 492 DRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAP 530
+ Y++ V ++D++ + T V T+ A
Sbjct: 67 QQLKKGDYSIYVLLSDAQ-NNPQLTVVNATVCSCEGKAI 104
Score = 29.7 bits (65), Expect = 0.32
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 526 NDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFI 567
NDN P T+ + + V T +D ++
Sbjct: 1 NDNGPVPSP---RVFTMCDQNPEPQVLT--ISDADIPPNTYP 37
Score = 25.8 bits (55), Expect = 7.3
Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 10/105 (9%)
Query: 61 SNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVA 120
+ + P V + D V S S G+ ++
Sbjct: 10 RVFTMCDQNPEP-QVLTISDADIPPNTYPYKVSLS-----HGSDLTWKAELDSKGTSMLL 63
Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAP 165
+ +Y + V D + N V + + A
Sbjct: 64 SPTQQLKKGDYSIYVLLSD---AQNNPQLTV-VNATVCSCEGKAI 104
>d1xkpb1 d.198.1.1 (B:2-122) Chaperone protein SycN {Yersinia pestis
[TaxId: 632]}
Length = 121
Score = 29.0 bits (65), Expect = 0.63
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 300 MTAVDQDSGDNGRVTYVISGGNEDARFHLD--HDKGILSLARVISEYDHQSKFRAVLNIT 357
+ S + ++ L+ L LAR ++ + + L +T
Sbjct: 16 VPTSSPLSP---LIQLEMAQS---GTLQLEQHGATLTLWLARSLAWHRCEDAMVKALTLT 69
Query: 358 ASDHGIP 364
A+
Sbjct: 70 AAQKSGA 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,019,503
Number of extensions: 93427
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 57
Length of query: 570
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 480
Effective length of database: 1,171,896
Effective search space: 562510080
Effective search space used: 562510080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)