BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8640
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 36 STSRLCRRTCGTIPL----SQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVED 91
S ++L R PL S ++ AV+P TGV+ ++QPLD +T SE + V D
Sbjct: 29 SVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET-KSEFTVEFSVSD 87
Query: 92 GGKPPLDSPLSSITHLKITLQ--DENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMD 149
+ K+ +Q D NDNAP F Y + EN P+G+ +F ATD D
Sbjct: 88 H---------QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD 138
Query: 150 KGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTLLSTY 209
G G + YS + F +D+ G+VT DYE Y T+ +T
Sbjct: 139 LGAGGSVLYSFQPPS-----------PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 187
Query: 210 SVWTRSL 216
TR L
Sbjct: 188 QDKTRPL 194
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ E+ P+GSSV A DMD L + + AS + F V+ TG+V
Sbjct: 19 LISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEAS---------RFFAVEPDTGVVW 66
Query: 189 TNAVFDYEARSRYA--FTLLSTYSVWTRSL 216
D E +S + F++ V TR +
Sbjct: 67 LRQPLDRETKSEFTVEFSVSDHQGVITRKV 96
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 36 STSRLCRRTCGTIPL----SQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVED 91
S ++L R PL S ++ AV+P TGV+ ++QPLD +T SE + V D
Sbjct: 28 SVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET-KSEFTVEFSVSD 86
Query: 92 GGKPPLDSPLSSITHLKITLQ--DENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMD 149
+ K+ +Q D NDNAP F Y + EN P+G+ +F ATD D
Sbjct: 87 H---------QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD 137
Query: 150 KGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTLLSTY 209
G G + YS + F +D+ G+VT DYE Y T+ +T
Sbjct: 138 LGAGGSVLYSFQPPS-----------PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 186
Query: 210 SVWTRSL 216
TR L
Sbjct: 187 QDKTRPL 193
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ E+ P+GSSV A DMD L + + AS + F V+ TG+V
Sbjct: 18 LISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEAS---------RFFAVEPDTGVVW 65
Query: 189 TNAVFDYEARSRYA--FTLLSTYSVWTRSL 216
D E +S + F++ V TR +
Sbjct: 66 LRQPLDRETKSEFTVEFSVSDHQGVITRKV 95
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQ--DENDN 117
AV+P TGV+ ++QPLD +T SE + V D + K+ +Q D NDN
Sbjct: 57 AVEPDTGVVWLRQPLDRET-KSEFTVEFSVSDH---------QGVITRKVNIQVGDVNDN 106
Query: 118 APKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL 177
AP F Y + EN P+G+ +F ATD D G G + YS +
Sbjct: 107 APTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS-----------PF 155
Query: 178 FRVDALTGLVTTNAVFDYEARSRYAFTLLSTYSVWTRSL 216
F +D+ G+VT DYE Y T+ +T TR L
Sbjct: 156 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ E+ P+GSSV A DMD L + + AS + F V+ TG+V
Sbjct: 19 LISEDTPVGSSVTQLLARDMDN---DPLVFGVPGEEAS---------RFFAVEPDTGVVW 66
Query: 189 TNAVFDYEARSRYA--FTLLSTYSVWTRSL 216
D E +S + F++ V TR +
Sbjct: 67 LRQPLDRETKSEFTVEFSVSDHQGVITRKV 96
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 36 STSRLCRRTCGTIPL----SQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVED 91
S ++L R PL S ++ AV+P TGV+ ++QPLD +T SE + V D
Sbjct: 29 SVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET-KSEFTVEFSVSD 87
Query: 92 GGKPPLDSPLSSITHLKITLQ--DENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMD 149
+ K+ +Q NDNAP F Y + EN P+G+ +F ATD D
Sbjct: 88 H---------QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD 138
Query: 150 KGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTLLSTY 209
G G + YS + F +D+ G+VT DYE Y T+ +T
Sbjct: 139 LGAGGSVLYSFQPPS-----------PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 187
Query: 210 SVWTRSL 216
TR L
Sbjct: 188 QDKTRPL 194
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ E+ P+GSSV A DMD L + + AS + F V+ TG+V
Sbjct: 19 LISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEAS---------RFFAVEPDTGVVW 66
Query: 189 TNAVFDYEARSRYA--FTLLSTYSVWTRSL 216
D E +S + F++ V TR +
Sbjct: 67 LRQPLDRETKSEFTVEFSVSDHQGVITRKV 96
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 24/155 (15%)
Query: 51 SQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEH---LLILKVEDGGKPPLDSPLSSITHL 107
+Q Q + P +G++ + + LD++ H L++ ED G S+ L
Sbjct: 257 AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG------FSTSVDL 310
Query: 108 KITLQDENDNAPKFPITEY-LEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAAS 166
I + D NDNAPKF + +Y V E+ P+G+S+ +A D D G ++ Y +
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV------ 364
Query: 167 GYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRY 201
S F VD+ G++ N D + + Y
Sbjct: 365 -------SDDHFAVDS-NGIIVNNKQLDADNNNAY 391
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 39 RLCRRTCGTIPLSQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLD 98
L R T P + Q I ++P++G LSV +PLD + + HL V+ G ++
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN-QVE 89
Query: 99 SPLSSITHLKITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGD--YGKL 156
+P+ + I + D NDN P+F + V E G+ V T A D D + G L
Sbjct: 90 NPID----IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML 145
Query: 157 NYSIISAAASGYTDVDDSWKLFRVDALTG-LVTTNAVFDYEARSRYAFTLLST 208
Y I+S A S S +F ++ TG ++T A D E +Y + +T
Sbjct: 146 RYRIVSQAPS-----TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 39 RLCRRTCGTIPLSQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLD 98
L R T P + Q I ++P++G LSV +PLD + + HL V+ G ++
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN-QVE 89
Query: 99 SPLSSITHLKITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGD--YGKL 156
+P+ + I + D NDN P+F + V E G+ V T A D D + G L
Sbjct: 90 NPIDIV----INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML 145
Query: 157 NYSIISAAASGYTDVDDSWKLFRVDALTG-LVTTNAVFDYEARSRYAFTLLST 208
Y I+S A S S +F ++ TG ++T A D E +Y + +T
Sbjct: 146 RYRILSQAPS-----TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 39 RLCRRTCGTIPLSQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLD 98
L R T P + Q I ++P++G LSV +PLD + + HL V+ G ++
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN-QVE 89
Query: 99 SPLSSITHLKITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGD--YGKL 156
+P+ + I + D NDN P+F + V E G+ V T A D D + G L
Sbjct: 90 NPIDIV----INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML 145
Query: 157 NYSIISAAASGYTDVDDSWKLFRVDALTG-LVTTNAVFDYEARSRYAFTLLST 208
Y I+S A S S +F ++ TG ++T A D E +Y + +T
Sbjct: 146 RYRILSQAPST-----PSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 66 GVLSVQQPLDYDTGSSEHLLILKVEDGGKPPL----DSPLSSITHLKITLQDENDNAPKF 121
G+++V +P+D++T + +L V + PL P S + +T+ D N+N P F
Sbjct: 283 GLVTVVKPIDFETN---RMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYF 338
Query: 122 PITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVD 181
+ E G+ + T A D D+ Y + N YT + D ++D
Sbjct: 339 APNPKIIRQEEGLHAGTMLTTLTAQDPDR--YMQQNIR--------YTKLSDPANWLKID 388
Query: 182 ALTGLVTTNAVFDYEA 197
+ G +TT AV D E+
Sbjct: 389 PVNGQITTIAVLDRES 404
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Query: 67 VLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPITEY 126
+++V LD + L+I + G P LS+ IT+ D NDN P+F +
Sbjct: 171 IITVAAGLDREKVQQYTLIIQATDMEGNPTYG--LSNTATAVITVTDVNDNPPEFTAMTF 228
Query: 127 LEFVGENEPIGSSVFTARATDMDKGDYGKLN--YSIISAAASGYTDVDDSWKLFRVDALT 184
V EN + V TD D+ N Y I +G + L ++
Sbjct: 229 YGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAI-----LTDPNSND 282
Query: 185 GLVTTNAVFDYEARSRYAFTLLSTYSV 211
GLVT D+E + T+ + V
Sbjct: 283 GLVTVVKPIDFETNRMFVLTVAAENQV 309
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 17/150 (11%)
Query: 61 VDPLTGVL---SVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITH-LKITLQDEND 116
+DP+ +L S + LD D + H ++++V+ K + I H ++I ++D ND
Sbjct: 67 LDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCVNK----KVGTVIYHEVRIVVRDRND 122
Query: 117 NAPKFPITEYLEFVGENEPIGSSVFTA-----RATDMDKGDYGKLNYSIISAAASGYTDV 171
N+P F Y V E P+G+++FT ATD+D G G++ Y I +
Sbjct: 123 NSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTS-- 180
Query: 172 DDSWKLFRVDALTGLVTTNAVFDYEARSRY 201
+D++++ + LTG V +YE ++RY
Sbjct: 181 NDTFEIPLM--LTGNVVLRKRLNYEDKTRY 208
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 19/160 (11%)
Query: 50 LSQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKI 109
LS + I +D +G + + LD + + L+ V+ PL+ P I +
Sbjct: 40 LSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI----V 95
Query: 110 TLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KLNYSIISAAAS 166
+QD NDN P+F Y V E +G+SV A+D D YG KL YSI+
Sbjct: 96 KVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP- 154
Query: 167 GYTDVDDSWKLFRVDALTGLVTTN-AVFDYEARSRYAFTL 205
F V+A TG++ T D EA+ Y +
Sbjct: 155 ----------YFSVEAQTGIIRTALPNMDREAKEEYHVVI 184
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 115 NDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDS 174
NDN P F + + EN P+G+SV ATD D G ++ Y I A + T
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRY-IFGAQVAPAT----- 61
Query: 175 WKLFRVDALTGLVTTNAVFDYEARSRYAFTLLST 208
+LF ++ TGL+T D E + + T+L++
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLAS 95
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 53 QQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQ 112
Q I ++ ++G +SV +PLD + ++ L + + GK +D P+ L I++
Sbjct: 44 QDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKI-IDGPV----RLDISVI 98
Query: 113 DENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKG--DYGKLNYSIISAAASGYTD 170
D+NDN P F Y+ V E P G++V A D D D L Y+I+ T
Sbjct: 99 DQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILK-----QTP 153
Query: 171 VDDSWKLFRVDALTGLVTT 189
S +F +D G + T
Sbjct: 154 TKPSPNMFYIDPEKGDIVT 172
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 115 NDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDS 174
NDN+P+F + Y + EN G+ + RA D+D G G++ Y +A S
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATES-------V 60
Query: 175 WKLFRVDALTGLVTTNAVFDYEARSRYAFTLLS 207
+L R+D +G ++ D E ++ FT+++
Sbjct: 61 RRLLRLDETSGWLSVLHRIDREEVNQLRFTVMA 93
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
+++P T ++ P E+L++++ +D G LS T L +TL D NDN P
Sbjct: 156 SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGG--HSGGLSGTTTLTVTLTDVNDNPP 213
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFR 179
KF + Y V E+ +G+++ +A D D G+ + +Y II D LF
Sbjct: 214 KFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDG---------DGTALFE 264
Query: 180 V----DALTGLVTTNAVFDYEARSRYAFTL 205
+ A G++ D+E + Y +
Sbjct: 265 ITSDAQAQDGVIRLRKPLDFETKKSYTLKV 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 98 DSPLSSITHLKITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG--- 154
+ PL + I +QD NDNAP+F Y V E +G+SV ATD D YG
Sbjct: 83 NKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSA 142
Query: 155 KLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTTN-AVFDYEARSRY 201
KL YSI+ + F ++ T ++ T D EA+ Y
Sbjct: 143 KLVYSIL-----------EGQPYFSIEPETAIIKTALPNMDREAKEEY 179
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 101 LSSITHLKITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSI 160
LS+ IT++D NDNAP F + Y V ENE + + + T + TD D +
Sbjct: 201 LSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDAPN-------- 251
Query: 161 ISAAASGYTDVDDSWKLFRV--DALT--GLVTTNAVFDYEARSRY 201
A + YT V+D + F V D T G++ T D+EA+ +Y
Sbjct: 252 TPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQY 296
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPMEIV----ITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALT 184
+ V E G+SV ATD D D N +I S ++ +F V+ T
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYNAAIAYTIVSQDPELPHK-NMFTVNRDT 169
Query: 185 GLVT 188
G+++
Sbjct: 170 GVIS 173
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + ++++L + ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDRE-AIAKYILYSHADSSNGEAVEDPM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 165 VNRDTGVIS 173
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 56 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 110
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 111 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 163
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 164 VNRDTGVIS 172
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 165 VNRDTGVIS 173
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVTTN-AVFDYEARSRYAFTL 205
V+ TG+++ + + D E+ Y +
Sbjct: 165 VNRDTGVISVDTSGLDRESYPTYTLVV 191
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 59 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 113
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 114 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 166
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 167 VNRDTGVIS 175
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 165 VNRDTGVIS 173
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 165 VNRDTGVIS 173
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG +SV + LD +T ++ L + + GK L+ P+ L++ + D+NDN P F
Sbjct: 57 TGSVSVTRTLDRETIATYQLYVETTDASGKT-LEGPVP----LEVIVIDQNDNRPIFREG 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKG--DYGKLNYSIISAAASGYTDVDDSWKLFRVDA 182
Y+ V E P G++V A D D D L Y+I S +F +D
Sbjct: 112 PYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKP-----SPNMFYIDP 166
Query: 183 LTGLVTT---NAVFDYEARSRYAFTLL 206
G + T A+ D E + L+
Sbjct: 167 EKGDIVTVVSPALLDRETLENPKYELI 193
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 59 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 113
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 114 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 166
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 167 VNRDTGVIS 175
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ D P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVAD-PM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 165 VNRDTGVIS 173
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 58 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 112
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 113 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 165
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 166 VNRDTGVIS 174
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 165 VNRDTGVIS 173
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL-----FR 179
+ V E G+SV ATD D D N AA YT V +L F
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADD-DVNTYN------AAIAYTIVSQDPELPHKNMFT 164
Query: 180 VDALTGLVT 188
V+ TG+++
Sbjct: 165 VNRDTGVIS 173
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 100 PLSSITHLKITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KL 156
P+ + I + D NDN P F Y V E +G+ V ATD D YG K+
Sbjct: 85 PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKV 144
Query: 157 NYSIISAAASGYTDVDDSWKLFRVDALTGLVTTNAV-FDYEARSRYAFTL 205
YSI+ F V++ TG++ T + D E R +Y +
Sbjct: 145 VYSILQGQP-----------YFSVESETGIIKTALLNMDRENREQYQVVI 183
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG + V +PLD + L V + G SP+ + I + D+NDN PKF
Sbjct: 212 TGWMLVTRPLDREEYDKYVLSSHAVSENG-----SPVEEPMEITINVIDQNDNRPKFTQD 266
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGD---YGKLNYSIISAAASGYTDVDDSWKLFRVD 181
+ V E G+ V ATD D G L+YSI+ + LF ++
Sbjct: 267 VFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE-----EPIPNLFTIN 321
Query: 182 ALTGLVT-TNAVFDYEARSRYAFTLLST 208
TG+++ D E Y T+ +T
Sbjct: 322 RETGVISLIGTGLDREKFPEYTLTVQAT 349
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 109 ITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMD-KGDYGKLNYSIISAAASG 167
I + D NDNAP F Y V ENE IG V TD+D G I G
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 422
Query: 168 YTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTL 205
+ ++ ++ G++TT D+E R +Y +
Sbjct: 423 FFNI-----TTDPESNQGILTTAKGLDFELRKQYVLQI 455
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V +PLD + ++ L V G ++ P+ + IT+ D+NDN P+F
Sbjct: 57 TGWLKVTEPLDRERIATYTLFSHAVSSNGNA-VEDPM----EILITVTDQNDNKPEFTQE 111
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALT 184
+ V E G+SV ATD D D N +I S ++ D +F ++ T
Sbjct: 112 VFKGSVMEGALPGTSVMEVTATDADD-DVNTYNAAIAYTILSQDPELPDK-NMFTINRNT 169
Query: 185 GLVT 188
G+++
Sbjct: 170 GVIS 173
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG L V QPLD + + L V G+ ++ P+ + IT+ D+NDN P+F
Sbjct: 59 TGWLKVTQPLDREAIAKYILYSHAVSSNGEA-VEDPM----EIVITVTDQNDNRPEFTQE 113
Query: 125 EYLEFVGENEPIGSSVFTARATDMD 149
+ V E G+SV ATD D
Sbjct: 114 VFEGSVAEGAVPGTSVMKVSATDAD 138
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
TG + V +PLD + L V + G SP+ + I + D+NDN PKF
Sbjct: 63 TGWMLVTRPLDREEYDKYVLSSHAVSENG-----SPVEEPMEITINVIDQNDNRPKFTQD 117
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGD---YGKLNYSIISAAASGYTDVDDSWKLFRVD 181
+ V E G+ V ATD D G L+YSI+ + LF ++
Sbjct: 118 VFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE-----EPIPNLFTIN 172
Query: 182 ALTGLVT-TNAVFDYEARSRYAFTLLST 208
TG+++ D E Y T+ +T
Sbjct: 173 RETGVISLIGTGLDREKFPEYTLTVQAT 200
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 109 ITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMD-KGDYGKLNYSIISAAASG 167
I + D NDNAP F Y V ENE IG V TD+D G I G
Sbjct: 215 IQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 273
Query: 168 YTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTL 205
+ ++ ++ G++TT D+E R +Y +
Sbjct: 274 FFNI-----TTDPESNQGILTTAKGLDFELRKQYVLQI 306
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 35 GSTSRLCRRTCGTIPLSQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGK 94
G L R T P + Q I ++P++G LSV +PLD + + HL V+ G
Sbjct: 29 GRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN 88
Query: 95 PPLDSPLSSITHLKITLQDENDNAPKF 121
+++P+ + I + D NDN P+F
Sbjct: 89 -QVENPIDIV----INVIDMNDNRPEF 110
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 109 ITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDK---GDYGKLNYSIISAAA 165
I + D NDNAP F + V E +G+SV A D D + + Y II
Sbjct: 92 IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIK--G 149
Query: 166 SGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRY 201
+ Y VDDS +F T A D E++S Y
Sbjct: 150 NEYFTVDDSGVIF---------TARADLDRESQSAY 176
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 82 EHLLILKVEDGGKPPLDSPLSSITH----------LKITLQDENDNAPKFPITEYLEFVG 131
E +L E G K L P+S +H L TL + NAP+ P+ ++ V
Sbjct: 182 ERAGVLCKEAGAKRALPLPVSVPSHCALXKPAADELAKTLAELEFNAPQIPVINNVDVVA 241
Query: 132 ENEPI 136
E +P+
Sbjct: 242 ETDPV 246
>pdb|3OHG|A Chain A, Crystal Structure Of A Protein With Unknown Function From
Duf2233 Family (Bacova_00430) From Bacteroides Ovatus At
1.80 A Resolution
Length = 285
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 74 LDYDTGSSEHLLILKVEDGGKPP---LDSPLSSITHLKIT 110
++ D G S L+I KV DGGKP L++P K+T
Sbjct: 237 INLDGGGSTTLIIRKVNDGGKPTFPILNTPADDRVPRKVT 276
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 130 VGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTT 189
+ E+ P+GSSV A DMD L + + AS + F V+ TG+V
Sbjct: 20 ISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEAS---------RFFAVEPDTGVVWL 67
Query: 190 NAVFDYEARSRYA--FTLLSTYSVWTRSL 216
D E +S + F++ V TR +
Sbjct: 68 RQPLDRETKSEFTVEFSVSDHQGVITRKV 96
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 36 STSRLCRRTCGTIPL----SQQQRLAIQAVDPLTGVLSVQQPLDYDTGS 80
S ++L R PL S ++ AV+P TGV+ ++QPLD +T S
Sbjct: 29 SVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKS 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,985,567
Number of Sequences: 62578
Number of extensions: 362398
Number of successful extensions: 817
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 63
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)