RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8640
(303 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 70.4 bits (173), Expect = 2e-15
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALT 184
Y V EN P G+ V T ATD D G+ G++ YSI+S + LF +D T
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVS---------GNEDGLFSIDPST 51
Query: 185 GLVTTNAVFDYEARSRYAFTLL 206
G +TT D E +S Y T+
Sbjct: 52 GEITTAKPLDREEQSSYTLTVT 73
Score = 58.9 bits (143), Expect = 3e-11
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDN 117
++DP TG ++ +PLD + S + L + DGG P PLSS + IT+ D NDN
Sbjct: 46 SIDPSTGEITTAKPLDREE-QSSYTLTVTATDGGGP----PLSSTATVTITVLDVNDN 98
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 61.2 bits (149), Expect = 3e-12
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
++DP TG ++ +PLD + E+ L ++ DGG PPL SS + IT+ D NDNAP
Sbjct: 27 SIDPETGEITTTKPLDREEQP-EYTLTVEATDGGGPPL----SSTATVTITVLDVNDNAP 81
Score = 52.7 bits (127), Expect = 3e-09
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 144 RATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAF 203
ATD D G+ GK+ YSI+S G F +D TG +TT D E + Y
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGL---------FSIDPETGEITTTKPLDREEQPEYTL 51
Query: 204 TLLST 208
T+ +T
Sbjct: 52 TVEAT 56
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 56.5 bits (137), Expect = 2e-10
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 126 YLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTG 185
Y V EN P+G+ V T ATD D G G++ YSI+ FR+D TG
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILG---------GGPGGWFRIDPDTG 51
Query: 186 LVTTNAVFDYEARSRYAFTLL 206
++T D E+ Y T+L
Sbjct: 52 DLSTTKPLDRESIGEYELTVL 72
Score = 40.0 bits (94), Expect = 1e-04
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQ 112
+DP TG LS +PLD ++ E+ L + D G PPL S T + IT+
Sbjct: 45 RIDPDTGDLSTTKPLDRES-IGEYELTVLATDSGGPPLSST----TTVTITVL 92
>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain. Cadherins are
glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers. This
family also includes the cadherin-like repeats of
extracellular alpha-dystroglycan.
Length = 98
Score = 33.1 bits (75), Expect = 0.041
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDN 117
+P +G+L + LD + ++ + G P S + I + DENDN
Sbjct: 47 WEPHSGILEGLEKLDREDKGVHYISVSAASLGANVPQTS-----SVFSIEVYDENDN 98
>gnl|CDD|203581 pfam07108, PipA, PipA protein. This family consists of several
Salmonella PipA (pathogenicity island-encoded protein A)
and related phage sequences. PipA is thought to
contribute to enteric but not to systemic salmonellosis.
The family carries a highly conserved HEXXH sequence
motif along with several highly conserved glutamic acid
residues which might be indicative of the family being a
metallo-peptidase.
Length = 200
Score = 30.3 bits (68), Expect = 0.94
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 90 EDGGKP--PLDSPLSSITHLKITLQDENDNAPKFPITEY----LEFVGENEP 135
DG + S + I H LQDE DN P+ P+ EY L+ +G P
Sbjct: 144 NDGPQLFDTTRSFMHEIVHALTHLQDEEDNHPRGPVVEYTNIILKEMGNKSP 195
>gnl|CDD|178196 PLN02584, PLN02584, 5'-methylthioadenosine nucleosidase.
Length = 249
Score = 28.4 bits (64), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 28 QVYLVWYGSTSRLCRRTCGTIPLSQQQRLAIQAVDP 63
+V++V G L + GT+P S AIQA+ P
Sbjct: 55 RVHVVCPGKDKALGVDSVGTVPASLVTYAAIQALKP 90
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 28.3 bits (64), Expect = 3.7
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 195 YEARSRYAFTLLSTYSVWTRSLVWSRPMQCLIMRRGVVFDY 235
YE R+AF Y + +R + ++ L +GV+ +
Sbjct: 46 YEDPKRWAFPF-QLYFLLSRLKQYKDALEHLSTGQGVILER 85
>gnl|CDD|236000 PRK07360, PRK07360, FO synthase subunit 2; Reviewed.
Length = 371
Score = 27.5 bits (62), Expect = 8.8
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 104 ITHLKI--TLQDENDNAPKFPITEY--LEFVGENEPIG 137
I HL I +Q E ITE+ L FV EN P+
Sbjct: 233 IDHLLILREIQQETGG-----ITEFVPLPFVHENAPLY 265
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,401,681
Number of extensions: 1439869
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 18
Length of query: 303
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 207
Effective length of database: 6,679,618
Effective search space: 1382680926
Effective search space used: 1382680926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)