RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8640
(303 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 126 bits (320), Expect = 1e-35
Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
AV+P TGV+ ++QPLD +T SE + V D + I + D NDNAP
Sbjct: 56 AVEPDTGVVWLRQPLDRET-KSEFTVEFSVSDHQGVIT-------RKVNIQVGDVNDNAP 107
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFR 179
F Y + EN P+G+ +F ATD D G G + YS + F
Sbjct: 108 TFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS-----------PFFA 156
Query: 180 VDALTGLVTTNAVFDYEARSRYAFTL 205
+D+ G+VT DYE Y T+
Sbjct: 157 IDSARGIVTVIQELDYEVTQAYQLTV 182
Score = 76.9 bits (190), Expect = 5e-17
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 114 ENDNAPKFPITEYLEFVG--ENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDV 171
+ + P F + ++ E+ P+GSSV A DMD L + +
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSG--------- 48
Query: 172 DDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTL 205
+++ + F V+ TG+V D E +S +
Sbjct: 49 EEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEF 82
Score = 60.7 bits (148), Expect = 3e-11
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDN 117
A+D G+++V Q LDY+ + + L + D K PLS++ +L I + D D
Sbjct: 156 AIDSARGIVTVIQELDYEV-TQAYQLTVNATDQDKTR---PLSTLANLAIIITDMQDM 209
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 123 bits (311), Expect = 2e-34
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 14/149 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
++ TG L V QPLD + ++++L ++ P + IT+ D+NDN P
Sbjct: 52 IIERETGWLKVTQPLDREA-IAKYILYSHAVSSNGEAVEDP----MEIVITVTDQNDNRP 106
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDY---GKLNYSIISAAASGYTDVDDSWK 176
+F + V E G+SV ATD D + Y+I+S
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ-----DPELPHKN 161
Query: 177 LFRVDALTGLVTT-NAVFDYEARSRYAFT 204
+F V+ TG+++ + D E+ Y
Sbjct: 162 MFTVNRDTGVISVLTSGLDRESYPTYTLV 190
Score = 56.2 bits (136), Expect = 1e-09
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
ENE G ++ K+ YSI +G +F ++ TG +
Sbjct: 8 SCPENEK-GEFPKNLVQIKSNRDKETKVFYSI-----TGQGADKPPVGVFIIERETGWLK 61
Query: 189 TNAVFDYEARSRYAFTL 205
D EA ++Y
Sbjct: 62 VTQPLDREAIAKYILYS 78
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 50 LSQQQRLAIQ---AVDPLTGVLSV-QQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSIT 105
+SQ L + V+ TGV+SV LD ++ + L+++ D LS+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRES-YPTYTLVVQAADLQGE----GLSTTA 205
Query: 106 HLKITLQD 113
IT++D
Sbjct: 206 KAVITVKD 213
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 123 bits (311), Expect = 2e-34
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 13/148 (8%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
++P++G LSV +PLD + + L D +++P+ + I + D NDN P
Sbjct: 52 IINPISGQLSVTKPLDREL-IARFHLRAHAVDINGNQVENPID----IVINVIDMNDNRP 106
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMD--KGDYGKLNYSIISAAASGYTDVDDSWKL 177
+F + V E G+ V T A D D G L Y I+S S +
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ-----APSTPSPNM 161
Query: 178 FRVDALTG-LVTTNAVFDYEARSRYAFT 204
F ++ TG ++T A D E +Y
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLI 189
Score = 58.9 bits (143), Expect = 1e-10
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ EN G D+ L YS+ A +F ++ ++G ++
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGAD-----QPPTGIFIINPISGQLS 61
Query: 189 TNAVFDYEARSRYAFTL 205
D E +R+
Sbjct: 62 VTKPLDRELIARFHLRA 78
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 120 bits (302), Expect = 3e-33
Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
V G + + LD + +E+ L + D L + I + D NDNAP
Sbjct: 47 KVQGYDGDIYAFERLDREK-KAEYELTAHIIDRRNNR---SLEPPSKFIIKVSDINDNAP 102
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KLNYSIISAAASGYTDVDDSWK 176
F + V E +G+SV A D D + Y II +
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN-----------E 151
Query: 177 LFRVDALTGLVTTNAVFDYEARSRYAFT 204
F VD + T A D E++S Y
Sbjct: 152 YFTVDDSGVIFTARADLDRESQSAYEII 179
Score = 47.7 bits (114), Expect = 9e-07
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 129 FVGENE--PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGL 186
+ E P+ V ++ + Y I +A+ F+V G
Sbjct: 8 HIREEIDSPLPHHVGKLTSSVGN----KNAMYIIEGESANTI---------FKVQGYDGD 54
Query: 187 VTTNAVFDYEARSRYAFTL 205
+ D E ++ Y T
Sbjct: 55 IYAFERLDREKKAEYELTA 73
Score = 41.5 bits (98), Expect = 1e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
VD + + + LD ++ S + +I+K +D SS + I L D
Sbjct: 154 TVDDSGVIFTARADLDRES-QSAYEIIVKAKDALGLT---GESSTATVIIRLTD 203
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 126 bits (319), Expect = 4e-33
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
++ TG L V QPLD + ++++L ++ P+ + IT+ D+NDN P+
Sbjct: 53 IERETGWLKVTQPLDREA-IAKYILYSHAVSSNGEAVEDPM----EIVITVTDQNDNRPE 107
Query: 121 FPITEYLEFVGENEPIGSSVFTARATDMDKGDY---GKLNYSIISAAASGYTDVDDSWKL 177
F + V E G+SV ATD D + Y+I+S +
Sbjct: 108 FTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ-----DPELPHKNM 162
Query: 178 FRVDALTGLVTT-NAVFDYEARSRYAFT 204
F V+ TG+++ + D E+ Y
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLV 190
Score = 111 bits (280), Expect = 9e-28
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 50/202 (24%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
G+L + LD++ +++L ++VE+ P S + S + + + D N+ AP F
Sbjct: 279 DGILKTAKGLDFEA-KQQYILHVRVENEE-PFEGSLVPSTATVTVDVVDVNE-APIFMPA 335
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALT 184
E V E+ +G + + A + D K+ Y I A+ ++ T
Sbjct: 336 ERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN----------WLEINPET 385
Query: 185 GLVTTNAVFDYEARSRYAFTLLSTYSVWTRSLVWSRPMQCLIMRRGVVFDYEARSRYAFT 244
G + T A D E ++ S Y
Sbjct: 386 GAIFTRAEMDRED-----------------------------------AEHVKNSTYVAL 410
Query: 245 LLSTDSGG--RTCKVKVRVEIE 264
+++TD G T + + +
Sbjct: 411 IIATDDGSPIATGTGTLLLVLL 432
Score = 92.4 bits (230), Expect = 4e-21
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 50 LSQQQRLAIQ---AVDPLTGVLSV-QQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSIT 105
+SQ L + V+ TGV+SV LD ++ + L+++ D L S+
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRES-YPTYTLVVQAADLQGEGL----STTA 205
Query: 106 HLKITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG--KLNYSIISA 163
IT++D NDNAP F + Y V ENE + + T + TD D + K Y++++
Sbjct: 206 KAVITVKDINDNAPVFNPSTYQGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVN- 263
Query: 164 AASGYTDVDDSWKLFRV----DALTGLVTTNAVFDYEARSRYAFT 204
D + F V G++ T D+EA+ +Y
Sbjct: 264 ---------DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILH 299
Score = 81.2 bits (201), Expect = 2e-17
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 22/152 (14%)
Query: 60 AVDPLTGVLSVQQPLDY----DTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDEN 115
++P TG + + +D +S ++ ++ D G P + L + L D N
Sbjct: 380 EINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIA----TGTGTLLLVLLDVN 435
Query: 116 DNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG-KLNYSIISAAASGYTDVDDS 174
DNAP + P + D D + A +
Sbjct: 436 DNAPIP--EPRNMQFCQRNPQPHII---TILDPDLPPNTSPFTAELTHGA-------SVN 483
Query: 175 WKLFRVDALTGLVTTNAVFDYEARSRYAFTLL 206
W + Y L
Sbjct: 484 WT-IEYNDAAQESLILQPRKDLEIGEYKIHLK 514
Score = 48.1 bits (115), Expect = 2e-06
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
ENE G ++ K+ YSI +G +F ++ TG +
Sbjct: 8 SCPENEK-GEFPKNLVQIKSNRDKETKVFYSI-----TGQGADKPPVGVFIIERETGWLK 61
Query: 189 TNAVFDYEARSRYAFTL 205
D EA ++Y
Sbjct: 62 VTQPLDREAIAKYILYS 78
Score = 41.2 bits (97), Expect = 3e-04
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
+ QP E+ + LK+ D +T L + + D
Sbjct: 492 AQESLILQPRKDLE-IGEYKIHLKLADNQNKDQ------VTTLDVHVCDCEGTVNNCMKA 544
Query: 125 EYLE 128
+
Sbjct: 545 HHHH 548
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 120 bits (303), Expect = 4e-33
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 15/152 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
++ TG +SV + LD +T + + L ++ D L+ P+ L++ + D+NDN P
Sbjct: 52 RINENTGSVSVTRTLDRET-IATYQLYVETTDASGKTLEGPVP----LEVIVIDQNDNRP 106
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDK--GDYGKLNYSIISAAASGYTDVDDSWKL 177
F Y+ V E P G++V A D D D L Y+I T S +
Sbjct: 107 IFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQ-----TPDKPSPNM 161
Query: 178 FRVDALTGLVTT---NAVFDYEARSRYAFTLL 206
F +D G + T A+ D E + L+
Sbjct: 162 FYIDPEKGDIVTVVSPALLDRETLENPKYELI 193
Score = 55.1 bits (133), Expect = 3e-09
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 129 FVGENE--PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGL 186
+ EN+ P V +D +G +L + D FR++ TG
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVD---------QDPKGTFRINENTGS 59
Query: 187 VTTNAVFDYEARSRYAFT 204
V+ D E + Y
Sbjct: 60 VSVTRTLDRETIATYQLY 77
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 119 bits (300), Expect = 9e-33
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
+D +G + + LD + +++ L+ + D PL + + +QD NDN P+
Sbjct: 51 IDDKSGNIHATKTLDREE-RAQYTLMAQAVDRDTNR---PLEPPSEFIVKVQDINDNPPE 106
Query: 121 FPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KLNYSIISAAASGYTDVDDSWKL 177
F Y V E +G+SV A+D D YG KL YSI+
Sbjct: 107 FLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ-----------PY 155
Query: 178 FRVDALTGLVTTNA-VFDYEARSRYAFT 204
F V+A TG++ T D EA+ Y
Sbjct: 156 FSVEAQTGIIRTALPNMDREAKEEYHVV 183
Score = 57.7 bits (140), Expect = 4e-10
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 60 AVDPLTGVLSVQQP-LDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNA 118
+V+ TG++ P +D + E+ ++++ +D G LS T + ITL D+ +
Sbjct: 157 SVEAQTGIIRTALPNMDREA-KEEYHVVIQAKDMGGHM--GGLSGTTKVTITLTDDYKDD 213
Query: 119 PK 120
K
Sbjct: 214 DK 215
Score = 55.4 bits (134), Expect = 2e-09
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 126 YLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTG 185
+ E + +D+D GD G + Y + A F +D +G
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSGD-GNIKYILSGEGAGTI---------FVIDDKSG 56
Query: 186 LVTTNAVFDYEARSRYAFTLL 206
+ D E R++Y
Sbjct: 57 NIHATKTLDREERAQYTLMAQ 77
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 125 bits (316), Expect = 1e-32
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
++P++G LSV +PLD + + L D +++P+ + I + D NDN P+
Sbjct: 53 INPISGQLSVTKPLDREL-IARFHLRAHAVDINGNQVENPID----IVINVIDMNDNRPE 107
Query: 121 FPITEYLEFVGENEPIGSSVFTARATDMD--KGDYGKLNYSIISAAASGYTDVDDSWKLF 178
F + V E G+ V T A D D G L Y I+S A S S +F
Sbjct: 108 FLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPS-----TPSPNMF 162
Query: 179 RVDALTG-LVTTNAVFDYEARSRYAFT 204
++ TG ++T A D E +Y
Sbjct: 163 TINNETGDIITVAAGLDREKVQQYTLI 189
Score = 109 bits (274), Expect = 6e-27
Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 52/204 (25%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLD--SPLSSITHLKITLQDENDNAPKFP 122
G+++V +P+D++T + +L + E+ P S + +T+ D N+N P F
Sbjct: 282 DGLVTVVKPIDFET-NRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFA 339
Query: 123 ITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDA 182
+ E G+ + T A D D+ + Y+ +S D ++D
Sbjct: 340 PNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS----------DPANWLKIDP 389
Query: 183 LTGLVTTNAVFDYEARSRYAFTLLSTYSVWTRSLVWSRPMQCLIMRRGVVFDYEARSRYA 242
+ G +TT AV D E+ + Y
Sbjct: 390 VNGQITTIAVLDRESP------------------------------------NVKNNIYN 413
Query: 243 FTLLSTDSG--GRTCKVKVRVEIE 264
T L++D+G + +++ +
Sbjct: 414 ATFLASDNGIPPMSGTGTLQIYLL 437
Score = 95.1 bits (237), Expect = 5e-22
Identities = 44/238 (18%), Positives = 71/238 (29%), Gaps = 45/238 (18%)
Query: 60 AVDPLTGVLS-VQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNA 118
++ TG + V LD + ++ LI++ D P LS+ IT+ D NDN
Sbjct: 163 TINNETGDIITVAAGLDREK-VQQYTLIIQATDMEGNPTYG-LSNTATAVITVTDVNDNP 220
Query: 119 PKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG--KLNYSIISAAASGYTDVDDSWK 176
P+F + V EN V TD D+ Y I +G +
Sbjct: 221 PEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTD-- 277
Query: 177 LFRVDALTGLVTTNAVFDYEARSRYAFTLLSTYSVWTRSLVWSRPMQCLIMRRGVVFDYE 236
++ GLVT D+E + T+
Sbjct: 278 ---PNSNDGLVTVVKPIDFETNRMFVLTV------------------------------A 304
Query: 237 ARSRYAFTLLSTDSGGRTCKVKVRVEIESRDEFHPQFTERTFKFILSGTDLPVGYVVG 294
A ++ V V + +E +P F L G ++
Sbjct: 305 AENQVPLA--KGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEE-GLHAGTMLT 358
Score = 83.2 bits (206), Expect = 5e-18
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 20/152 (13%)
Query: 60 AVDPLTGVLSVQQPLDYDTGS---SEHLLILKVEDGGKPPLDSPLSSITHLKITLQDEND 116
+DP+ G ++ LD ++ + + + D G PP+ S L+I L D ND
Sbjct: 386 KIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPM----SGTGTLQIYLLDIND 441
Query: 117 NAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG-KLNYSIISAAASGYTDVDDSW 175
NAP+ E A D D + + + +
Sbjct: 442 NAPQV--LPQEAETCETPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIK------- 490
Query: 176 KLFRVDALTG-LVTTNAVFDYEARSRYAFTLL 206
+ + ++ L G N + Y ++
Sbjct: 491 RNWTINRLNGDFAQLNLKIKFLEAGIYEVPII 522
Score = 52.7 bits (127), Expect = 5e-08
Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 61 VDPLTG-VLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
++ L G + + + + + + + + D G PP S+I+ L++ + + N
Sbjct: 495 INRLNGDFAQLNLKIKFLE-AGIYEVPIIITDSGNPPK----SNISILRVKVCQCDSNGD 549
Query: 120 KFPITEY 126
+ +
Sbjct: 550 CTDVHHH 556
Score = 46.9 bits (112), Expect = 4e-06
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ EN G D+ L YS+ +G +F ++ ++G ++
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDKNLSLRYSV-----TGPGADQPPTGIFIINPISGQLS 61
Query: 189 TNAVFDYEARSRYAFTL 205
D E +R+
Sbjct: 62 VTKPLDRELIARFHLRA 78
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 125 bits (315), Expect = 1e-32
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 14/145 (9%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
++ TG + V +PLD + +++L P++ P+ + I + D+NDN PK
Sbjct: 59 IEWETGWMLVTRPLDREE-YDKYVLSSHAVSENGSPVEEPM----EITINVIDQNDNRPK 113
Query: 121 FPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KLNYSIISAAASGYTDVDDSWKL 177
F + V E G+ V ATD D L+YSI+ + L
Sbjct: 114 FTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE-----EPIPNL 168
Query: 178 FRVDALTGLVTTNAVF-DYEARSRY 201
F ++ TG+++ D E Y
Sbjct: 169 FTINRETGVISLIGTGLDREKFPEY 193
Score = 107 bits (268), Expect = 4e-26
Identities = 43/218 (19%), Positives = 76/218 (34%), Gaps = 51/218 (23%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
G+L+ + LD++ +++L + VE+ P +S + +T++D N+ P F
Sbjct: 285 QGILTTAKGLDFEL-RKQYVLQITVENAE-PFSVPLPTSTATVTVTVEDVNEA-PFFVPA 341
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALT 184
V E+ G + + A D DK KL+Y I + D + V+
Sbjct: 342 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN----------DPARWLTVNKDN 391
Query: 185 GLVTTNAVFDYEARSRYAFTLLSTYSVWTRSLVWSRPMQCLIMRRGVVFDYEARSRYAFT 244
G+VT N D E+ Y + Y
Sbjct: 392 GIVTGNGNLDRESE------------------------------------YVKNNTYTVI 415
Query: 245 LLSTDSG--GRTCKVKVRVEIESRDEFHPQFTERTFKF 280
+L TD G T + + + ++ P + R F
Sbjct: 416 MLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTM 453
Score = 90.1 bits (224), Expect = 2e-20
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 13/147 (8%)
Query: 61 VDPLTGVLSV-QQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
++ TGV+S+ LD + E+ L ++ D L S I + D NDNAP
Sbjct: 171 INRETGVISLIGTGLDREK-FPEYTLTVQATDLEGAGL----SVEGKAIIQITDANDNAP 225
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLN-YSIISAAASGYTDVDDSWKLF 178
F Y V ENE G V TD+D I G+ ++
Sbjct: 226 IFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD---- 280
Query: 179 RVDALTGLVTTNAVFDYEARSRYAFTL 205
++ G++TT D+E R +Y +
Sbjct: 281 -PESNQGILTTAKGLDFELRKQYVLQI 306
Score = 80.8 bits (200), Expect = 3e-17
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 22/151 (14%)
Query: 60 AVDPLTGVLSVQQPLDYDTGS---SEHLLILKVEDGGKPPLDSPLSSITHLKITLQDEND 116
V+ G+++ LD ++ + + +I+ V D G + L + + D ND
Sbjct: 386 TVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG----TGTGTLILHVLDVND 441
Query: 117 NAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG-KLNYSIISAAASGYTDVDDSW 175
N P + EP +D D S+ +
Sbjct: 442 NGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLT-------- 488
Query: 176 KLFRVDALTGLVTTNAVFDYEARSRYAFTLL 206
G + + Y+ +L
Sbjct: 489 -WKAELDSKGTSMLLSPTQQLKKGDYSIYVL 518
Score = 46.9 bits (112), Expect = 5e-06
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 118 APKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL 177
+ I E P + ++ +K + K+ YSI +G + +
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSI-----TGQGADNPPQGV 56
Query: 178 FRVDALTGLVTTNAVFDYEARSRYAFTL 205
FR++ TG + D E +Y +
Sbjct: 57 FRIEWETGWMLVTRPLDREEYDKYVLSS 84
Score = 36.9 bits (86), Expect = 0.007
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
A G + P ++ + + + D P ++ + + A
Sbjct: 491 AELDSKGTSMLLSPTQQLK-KGDYSIYVLLSDAQNN----PQLTVVNATVC--SCEGKAI 543
Query: 120 KF 121
K
Sbjct: 544 KC 545
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 120 bits (304), Expect = 2e-32
Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
VD +GV+ + + E++L +K ED D S ++++ AP
Sbjct: 155 EVDERSGVVRTRGTDLFQL-DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAP 212
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFR 179
+F + Y + EN+ S + + +A ++ Y++ + F
Sbjct: 213 QFYMPSYEAEIPENQKKDSDIISIKAKS---FADREIRYTLKAQ--------GQGAGTFN 261
Query: 180 VDALTGLVTTNAVFDYEARSRYAF 203
+ +G+V D+E +
Sbjct: 262 IGPTSGIVKLAKELDFEDLRQPHV 285
Score = 112 bits (281), Expect = 4e-29
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 22/153 (14%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHL-----LILKVEDGGKPPLDSPLSSITHLKITLQDE 114
G + V++ DY+ E +I + + + I ++D
Sbjct: 44 VTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKY----TDNQRVIILVKDV 99
Query: 115 NDNAPKFPITE--YLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVD 172
ND P F V N P + VFT +A D D ++Y I+ D
Sbjct: 100 NDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVR---------D 148
Query: 173 DSWKLFRVDALTGLVTTNAVFDYEARSRYAFTL 205
+ F VD +G+V T ++ Y +
Sbjct: 149 RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYV 181
Score = 55.5 bits (134), Expect = 5e-09
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVE--DGGKPPLDSPLSSITHLKITLQDENDN 117
+ P +G++ + + LD++ H+ L V + S+ L I + D NDN
Sbjct: 261 NIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-----GGFSTSVDLTIRVTDVNDN 315
Query: 118 A 118
A
Sbjct: 316 A 316
Score = 50.1 bits (120), Expect = 3e-07
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 1/65 (1%)
Query: 140 VFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARS 199
T+ D GK + + + D + G V +DYE
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDD-NPWVTVETNGAVRVKKKWDYEELG 64
Query: 200 RYAFT 204
Sbjct: 65 PEKTI 69
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 124 bits (313), Expect = 6e-32
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
++ TG + V +PLD + +++L P++ P+ + I + D+NDN PK
Sbjct: 208 IEWETGWMLVTRPLDREE-YDKYVLSSHAVSENGSPVEEPME----ITINVIDQNDNRPK 262
Query: 121 FPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KLNYSIISAAASGYTDVDDSWKL 177
F + V E G+ V ATD D L+YSI+ + L
Sbjct: 263 FTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE-----EPIPNL 317
Query: 178 FRVDALTGLVTTNAVF-DYEARSRYAFT 204
F ++ TG+++ D E Y T
Sbjct: 318 FTINRETGVISLIGTGLDREKFPEYTLT 345
Score = 106 bits (266), Expect = 8e-26
Identities = 43/218 (19%), Positives = 76/218 (34%), Gaps = 51/218 (23%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPKFPIT 124
G+L+ + LD++ +++L + VE+ P +S + +T++D N+ P F
Sbjct: 434 QGILTTAKGLDFEL-RKQYVLQITVENAE-PFSVPLPTSTATVTVTVEDVNEA-PFFVPA 490
Query: 125 EYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALT 184
V E+ G + + A D DK KL+Y I + D + V+
Sbjct: 491 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN----------DPARWLTVNKDN 540
Query: 185 GLVTTNAVFDYEARSRYAFTLLSTYSVWTRSLVWSRPMQCLIMRRGVVFDYEARSRYAFT 244
G+VT N D E+ Y + Y
Sbjct: 541 GIVTGNGNLDRESE------------------------------------YVKNNTYTVI 564
Query: 245 LLSTDSG--GRTCKVKVRVEIESRDEFHPQFTERTFKF 280
+L TD G T + + + ++ P + R F
Sbjct: 565 MLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTM 602
Score = 92.6 bits (230), Expect = 4e-21
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 13/148 (8%)
Query: 60 AVDPLTGVLSV-QQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNA 118
++ TGV+S+ LD + E+ L ++ D L S I + D NDNA
Sbjct: 319 TINRETGVISLIGTGLDREK-FPEYTLTVQATDLEGAGL----SVEGKAIIQITDANDNA 373
Query: 119 PKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLN-YSIISAAASGYTDVDDSWKL 177
P F Y V ENE G V TD+D I G+ ++
Sbjct: 374 PIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD--- 429
Query: 178 FRVDALTGLVTTNAVFDYEARSRYAFTL 205
++ G++TT D+E R +Y +
Sbjct: 430 --PESNQGILTTAKGLDFELRKQYVLQI 455
Score = 80.3 bits (198), Expect = 6e-17
Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 22/151 (14%)
Query: 60 AVDPLTGVLSVQQPLDYDTGS---SEHLLILKVEDGGKPPLDSPLSSITHLKITLQDEND 116
V+ G+++ LD ++ + + +I+ V D G + L + + D ND
Sbjct: 535 TVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG----TGTGTLILHVLDVND 590
Query: 117 NAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYG-KLNYSIISAAASGYTDVDDSW 175
N P +N +D D S+ + + DS
Sbjct: 591 NGPVPS-PRVFTMCDQN----PEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDS- 644
Query: 176 KLFRVDALTGLVTTNAVFDYEARSRYAFTLL 206
G + + Y+ +L
Sbjct: 645 --------KGTSMLLSPTQQLKKGDYSIYVL 667
Score = 66.4 bits (162), Expect = 3e-12
Identities = 21/210 (10%), Positives = 45/210 (21%), Gaps = 51/210 (24%)
Query: 97 LDSPLSSITHLKITLQDENDNAPKFPITEYLEFVGENE-PIGSSVFTARATDMDKGDYGK 155
L L + + D + P F EY+ V E G + +D
Sbjct: 13 LCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR--KH 70
Query: 156 LNYSIISAAASGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTLLSTYSVWTRS 215
Y + FRV ++ V +++ +
Sbjct: 71 GLYDVGD-------------SRFRVLPDGTVLVKRHV-KLHKDTKFTISTWD-------- 108
Query: 216 LVWSRPMQCLIMRRGVVFDYEARSRYAFTLLSTDSGG----RTCKVKVRVEIESRDEFHP 271
+ + S + K+ V
Sbjct: 109 ------------------ARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGL 150
Query: 272 QFTERTFK----FILSGTDLPVGYVVGHLR 297
+ +R + + P + ++
Sbjct: 151 KRKKRDWVIPPIKVSENERGPFPKRLVQIK 180
Score = 60.3 bits (146), Expect = 2e-10
Identities = 24/152 (15%), Positives = 44/152 (28%), Gaps = 11/152 (7%)
Query: 57 AIQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDEND 116
+ V D + + + S + L + E
Sbjct: 90 VKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGE--EAHSRSSKLPVLTFPETH 147
Query: 117 NAPKFPITEYLE---FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDD 173
K +++ V ENE G +K + K+ YSI +G +
Sbjct: 148 TGLKRKKRDWVIPPIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSI-----TGQGADNP 201
Query: 174 SWKLFRVDALTGLVTTNAVFDYEARSRYAFTL 205
+FR++ TG + D E +Y +
Sbjct: 202 PQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 233
Score = 34.5 bits (79), Expect = 0.039
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 7/72 (9%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
G + P ++ + + + D P + + T+ A K
Sbjct: 641 ELDSKGTSMLLSPTQQLK-KGDYSIYVLLSDAQNNPQLTV------VNATVCSCEGKAIK 693
Query: 121 FPITEYLEFVGE 132
F
Sbjct: 694 CQEKLVGGFDLP 705
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 117 bits (294), Expect = 6e-32
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 19/148 (12%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
++ TG + + LD + ++L + + P+ + I + D NDN P
Sbjct: 50 INENTGDIQATKRLDREE-KPVYILRAQAVNRRTGR---PVEPESEFIIKIHDINDNEPI 105
Query: 121 FPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KLNYSIISAAASGYTDVDDSWKL 177
F Y V E +G+ V ATD D YG K+ YSI+
Sbjct: 106 FTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ-----------PY 154
Query: 178 FRVDALTGLVTTNAV-FDYEARSRYAFT 204
F V++ TG++ T + D E R +Y
Sbjct: 155 FSVESETGIIKTALLNMDRENREQYQVV 182
Score = 56.1 bits (136), Expect = 1e-09
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 123 ITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDA 182
+ + E +D D+GD G L Y + A LF ++
Sbjct: 3 MANQFFLLEEYTGSDYQYVGKLHSDQDRGD-GSLKYILSGDGAGD---------LFIINE 52
Query: 183 LTGLVTTNAVFDYEARSRYAFTLL 206
TG + D E + Y
Sbjct: 53 NTGDIQATKRLDREEKPVYILRAQ 76
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 116 bits (292), Expect = 6e-30
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSE-----HLLILKVEDGGKPPLDSPLSSITHLKITLQDE 114
G + V++ DY+ E ++I + + + I ++D
Sbjct: 49 VTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKY----TDNQRVIILVKDV 104
Query: 115 NDNAPKF--PITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVD 172
ND P F V N P + VFT +A D D ++Y I+ D
Sbjct: 105 NDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVR---------D 153
Query: 173 DSWKLFRVDALTGLVTTNAVFDYEARSRYAFT 204
+ F VD +G+V T ++ Y
Sbjct: 154 RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLY 185
Score = 109 bits (274), Expect = 2e-27
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHL--LILKVEDGGKPPLDSPLSSITHLKITLQDENDN 117
+ P +G++ + + LD++ H+ LI+ + S+ L I + D NDN
Sbjct: 266 NIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG-----FSTSVDLTIRVTDVNDN 320
Query: 118 APKFPITEYLEF-VGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWK 176
APKF + +Y V E+ P+G+S+ +A D D G ++ Y + + +
Sbjct: 321 APKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV----SDDH-------- 368
Query: 177 LFRVDALTGLVTTNAVFDYEA-RSRYAFT 204
F VD+ G++ N D + + Y F
Sbjct: 369 -FAVDS-NGIIVNNKQLDADNNNAYYEFI 395
Score = 99.7 bits (249), Expect = 5e-24
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
VD +GV+ + + E++L +K ED D S ++++ AP
Sbjct: 160 EVDERSGVVRTRGTDLFQL-DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSI-VGGKRAP 217
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFR 179
+F + Y + EN+ S + + +A ++ Y++ A G F
Sbjct: 218 QFYMPSYEAEIPENQKKDSDIISIKAKS---FADREIRYTLK---AQGQGAGT-----FN 266
Query: 180 VDALTGLVTTNAVFDYEARSR 200
+ +G+V D+E +
Sbjct: 267 IGPTSGIVKLAKELDFEDLRQ 287
Score = 46.5 bits (111), Expect = 4e-06
Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 65 TGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDE 114
G++ + LD D ++ + I+ +D G+P P S + +++ +++
Sbjct: 374 NGIIVNNKQLDADNNNAYYEFIVTAKDKGEP----PKSGVATVRVYTKNK 419
Score = 43.5 bits (103), Expect = 4e-05
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 4/73 (5%)
Query: 130 VGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTT 189
V + T+ D GK + + + D + G V
Sbjct: 4 VTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDD-NPWVTVETNGAVRV 59
Query: 190 NAVFDYEARSRYA 202
+DYE
Sbjct: 60 KKKWDYEELGPEK 72
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 111 bits (278), Expect = 3e-29
Identities = 30/176 (17%), Positives = 50/176 (28%), Gaps = 29/176 (16%)
Query: 60 AVDPLTGVLSVQQPLDY---------DTGSSEHLLILKVEDGGKPPLDSPLSSITHLKIT 110
+ TG+L +Q+ LD+ + G + LKV + ++
Sbjct: 59 RIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVY 118
Query: 111 LQDENDNAP----------KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSI 160
N + P FP T + EN P G+ + Y +
Sbjct: 119 FSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRL 178
Query: 161 ISAAASGYTDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFTLLSTYSVWTRSL 216
+ FR + V+T D E R +Y + T R
Sbjct: 179 LE----------GEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREE 224
Score = 67.6 bits (165), Expect = 2e-13
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
P + +S + LD + L+ + G + +T+ DE+D+AP
Sbjct: 187 RSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREE----VVMVPFPVTVYDEDDSAP 242
Query: 120 KFP 122
+F
Sbjct: 243 EFE 245
Score = 66.5 bits (162), Expect = 5e-13
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 121 FPITEYLEFVGENEPIGSSVFTARAT--DMDKGDYGKLNYSIISAAASGYTDVDDSWKLF 178
F Y E + ++ G+ + A ++ +L + Y
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYG----TYRTRLHENNWI 58
Query: 179 RVDALTGLVTTNAVFDYEARSRYAFTLLSTYSVWTRSLVWSRP 221
R+ TGL+ D+ + + + + V+ P
Sbjct: 59 RIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSP 101
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 110 bits (276), Expect = 3e-28
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 61 VDPLTGVLSVQQP-LDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
++P T ++ P +D + E+L++++ +D G LS T L +TL D NDN P
Sbjct: 157 IEPETAIIKTALPNMDREA-KEEYLVVIQAKDMGGHS--GGLSGTTTLTVTLTDVNDNPP 213
Query: 120 KFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFR 179
KF + Y V E+ +G+++ +A D D G+ + +Y II + ++
Sbjct: 214 KFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSD----- 268
Query: 180 VDALTGLVTTNAVFDYEARSRYAFTL 205
A G++ D+E + Y +
Sbjct: 269 AQAQDGVIRLRKPLDFETKKSYTLKV 294
Score = 102 bits (256), Expect = 2e-25
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
++ +TG + + LD + +E+ L + D PL + I +QD NDNAP+
Sbjct: 50 INDITGDIHAIKRLDREE-KAEYTLTAQAVDFETNK---PLEPPSEFIIKVQDINDNAPE 105
Query: 121 FPITEYLEFVGENEPIGSSVFTARATDMDKGDYG---KLNYSIISAAASGYTDVDDSWKL 177
F Y V E +G+SV ATD D YG KL YSI+
Sbjct: 106 FLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILE-------GQP----Y 154
Query: 178 FRVDALTGLV-TTNAVFDYEARSRYAFT 204
F ++ T ++ T D EA+ Y
Sbjct: 155 FSIEPETAIIKTALPNMDREAKEEYLVV 182
Score = 56.9 bits (138), Expect = 2e-09
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 13/87 (14%)
Query: 118 APKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL 177
+ + LE E + TD+D G K+ Y + A +
Sbjct: 1 SWVWNQMFVLE---EFSGPEPILVGRLHTDLDPGS-KKIKYILSGDGAGT---------I 47
Query: 178 FRVDALTGLVTTNAVFDYEARSRYAFT 204
F+++ +TG + D E ++ Y T
Sbjct: 48 FQINDITGDIHAIKRLDREEKAEYTLT 74
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 88.3 bits (220), Expect = 4e-22
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 109 ITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGY 168
+ NDN+P+F + Y + EN G+ + RA D+D G G++ Y +A
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAAT---- 57
Query: 169 TDVDDSWKLFRVDALTGLVTTNAVFDYEARSRYAFT 204
+ +L R+D +G ++ D E ++ FT
Sbjct: 58 ---ESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT 90
Score = 52.9 bits (128), Expect = 4e-09
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAP 119
+D +G LSV +D + ++ + D G+PP + + + ++DENDN P
Sbjct: 65 RLDETSGWLSVLHRIDREE-VNQLRFTVMARDRGQPPK----TDKATVVLNIKDENDNVP 119
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 85.2 bits (212), Expect = 5e-21
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 109 ITLQDENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGY 168
+ NDN P F + + EN P+G+SV ATD D G ++ Y + A
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVA--- 58
Query: 169 TDVDDSWKLFRVDALTGLVTTNAVFDYEARSRY 201
+ +LF ++ TGL+T D E + +
Sbjct: 59 ---PATKRLFALNNTTGLITVQRSLDREETAIH 88
Score = 33.6 bits (78), Expect = 0.016
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDEN 115
A++ TG+++VQ+ LD + ++ H + + DG + + I + D N
Sbjct: 66 ALNNTTGLITVQRSLDREE-TAIHKVTVLASDGS------STPARATVTINVTDVN 114
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 63.8 bits (156), Expect = 3e-13
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
++P++G LSV +PLD + + L D +++P+ + I + D NDN P+
Sbjct: 55 INPISGQLSVTKPLDREL-IARFHLRAHAVDINGNQVENPID----IVINVIDMNDNRPE 109
Query: 121 F 121
F
Sbjct: 110 F 110
Score = 58.4 bits (142), Expect = 3e-11
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ EN G + L YS+ A +F ++ ++G ++
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGAD-----QPPTGIFIINPISGQLS 63
Query: 189 TNAVFDYEARSRYAFT 204
D E +R+
Sbjct: 64 VTKPLDRELIARFHLR 79
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 63.9 bits (156), Expect = 5e-13
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
+ TG L+V LD + + LL D ++ PL L+I + D NDN P
Sbjct: 65 FNKDTGELNVTSILDREE-TPFFLLTGYALDARGNNVEKPLE----LRIKVLDINDNEPV 119
Query: 121 FP 122
F
Sbjct: 120 FT 121
Score = 53.9 bits (130), Expect = 1e-09
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 129 FVGENE--PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGL 186
+ E E + + +D+ + K+ Y +G + + +F + TG
Sbjct: 18 ALREGEDLSKKNPIAKIH-SDLAEERGLKITYKY-----TGKGITEPPFGIFVFNKDTGE 71
Query: 187 VTTNAVFDYEARSRYAFT 204
+ ++ D E + T
Sbjct: 72 LNVTSILDREETPFFLLT 89
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 57.8 bits (140), Expect = 5e-11
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 129 FVGENE--PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGL 186
+ EN+ P V +D +G +L + G FR++ TG
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG---------TFRINENTGS 59
Query: 187 VTTNAVFDYEARSRYAFT 204
V+ D E + Y
Sbjct: 60 VSVTRTLDRETIATYQLY 77
Score = 40.0 bits (94), Expect = 8e-05
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
++ TG +SV + LD +T + + L ++ D L+ P+ L++ + D
Sbjct: 52 RINENTGSVSVTRTLDRET-IATYQLYVETTDASGKTLEGPVP----LEVIVID 100
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 56.6 bits (137), Expect = 1e-10
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 130 VGENE--PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLV 187
+ EN+ P V +D G KL + G +F+++ +G V
Sbjct: 9 IPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKG---------IFKINENSGEV 59
Query: 188 TTNAVFDYEARSRYAFT 204
+ D EA Y
Sbjct: 60 SVTKALDREAIPSYQLQ 76
Score = 40.4 bits (95), Expect = 7e-05
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
++ +G +SV + LD + + L ++ D ++ P+ L+I + D
Sbjct: 51 KINENSGEVSVTKALDREA-IPSYQLQVETTDENGKTIEGPVD----LEILVID 99
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 55.8 bits (135), Expect = 3e-10
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 6/87 (6%)
Query: 118 APKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKL 177
P ENE G +K GK+ YSI A +
Sbjct: 1 GPLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADT-----PPVGV 54
Query: 178 FRVDALTGLVTTNAVFDYEARSRYAFT 204
F ++ TG + D E + Y
Sbjct: 55 FIIERETGWLKVTEPLDRERIATYTLF 81
Score = 45.8 bits (109), Expect = 9e-07
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDE 114
++ TG L V +PLD + + + L ++ P+ + IT+ D+
Sbjct: 56 IIERETGWLKVTEPLDRER-IATYTLFSHAVSSNGNAVEDPME----ILITVTDQ 105
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 53.9 bits (130), Expect = 1e-09
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 129 FVGENE-PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLV 187
FV E +DMD+GD G + Y + A +F +D TG +
Sbjct: 9 FVLEEYTGTDPLYVGKLHSDMDRGD-GSIKYILSGEGAGI---------VFTIDDTTGDI 58
Query: 188 TTNAVFDYEARSRYAFT 204
D E RS+Y
Sbjct: 59 HAIQRLDREERSQYTLR 75
Score = 41.2 bits (97), Expect = 3e-05
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
+D TG + Q LD + S L ++ P++ I +QD
Sbjct: 51 IDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESE----FIIKIQD 99
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 53.2 bits (128), Expect = 2e-09
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 130 VGENE--PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLV 187
+ EN+ P SV ++ +G +L+ + G +FR++ ++G V
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKG---------IFRINEISGDV 59
Query: 188 TTNAVFDYEARSRYAFT 204
+ D EA + Y
Sbjct: 60 SVTRPLDREAIANYELE 76
Score = 40.9 bits (96), Expect = 4e-05
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
++ ++G +SV +PLD + ++ L + +V D +D P+ L I++ D
Sbjct: 51 RINEISGDVSVTRPLDREAIANYELEV-EVTDLSGKIIDGPVR----LDISVID 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 48.2 bits (115), Expect = 9e-08
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 129 FVGENE-PIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLV 187
FV E + TD+D G K+ Y + A +F+++ +TG +
Sbjct: 8 FVLEEFSGPEPILVGRLHTDLDPGS-KKIKYILSGDGAGT---------IFQINDITGDI 57
Query: 188 TTNAVFDYEARSRYAFT 204
D E ++ Y T
Sbjct: 58 HAIKRLDREEKAEYTLT 74
Score = 40.9 bits (96), Expect = 4e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
++ +TG + + LD + + L V+ PL+ P I +QD
Sbjct: 50 INDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSE----FIIKVQD 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 9e-07
Identities = 51/364 (14%), Positives = 101/364 (27%), Gaps = 97/364 (26%)
Query: 3 TRSLVWLQP--------M-----QCLIMR----RGVVHRENIQVYLVWYGSTSRLCRRTC 45
++L+ L+P + + + V + + +++ W + C
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WL--NLKNCNSPE 196
Query: 46 GTIPLSQQQRLAIQAVDPLTGVLSVQQPLDYDTGSSEH--------------LLILK-VE 90
L Q+L Q T + S + LL+L V+
Sbjct: 197 TV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 91 DGGKPPLDSPLSSITHLK---------ITLQDEN-----DNAPKFPITEYLEFVGENEPI 136
+ +T + + A I+ +
Sbjct: 255 NA------------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 137 GSSVFTARATDMDKGD-------YGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVTT 189
S+ + D D SII+ + D+WK D LT ++ +
Sbjct: 303 VKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 190 --NAVFDYEARSRY-AFTLLSTYSVW----TRSLVWSRPMQCLIMRRGVVFDYEARSRYA 242
N + E R + ++ S SL+W ++ +M VV S
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYS--- 415
Query: 243 FTLLSTDSGGRTCKV-----KVRVEIESRDEFHPQFTER-TFKFILSGTDLPV----GYV 292
L+ T + +++V++E+ H + DL Y
Sbjct: 416 --LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 293 VGHL 296
H+
Sbjct: 474 YSHI 477
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 38.4 bits (90), Expect = 4e-04
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 60 AVDPLTGVLSVQQPLDYDT--GSSEH-LLILKVEDGGKPPLDSPLSSITHLKITLQDEND 116
++ +G L +++ LD + GS+ +L +V L SP+ +I LQD ND
Sbjct: 58 QLEQKSGNLLLKEKLDREELCGSTNPCILHFQVL------LKSPVQ-FIQGEIQLQDVND 110
Query: 117 NAPKFPITE 125
+AP+F E
Sbjct: 111 HAPEFMEDE 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.009
Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 54/156 (34%)
Query: 191 AVFDYEA----RSRYAFTLLSTYSVWTRSLVWSRPMQCLIMRRGVVFDYEARSRYAFTLL 246
V++ A + Y F++L +V + P+ I G R Y+ +
Sbjct: 1644 DVWN-RADNHFKDTYGFSILD--------IVINNPVNLTIHFGGEK-GKRIRENYSAMIF 1693
Query: 247 STDSGGRTCKVKVRVEIESRDE---F-HPQ----FTERT-----------FKFILSGTDL 287
T G+ K+ EI F + T+ T F+ + S +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 288 PVGYVV-GH--------------------LRLVRFR 302
P GH + +V +R
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Score = 33.9 bits (77), Expect = 0.082
Identities = 51/267 (19%), Positives = 75/267 (28%), Gaps = 94/267 (35%)
Query: 95 PPLDSPL--SSITHLKITLQDENDNAPKF----------------PITEYLEFVGENEP- 135
L L S L ++ D F P +YL + + P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 136 IG-----SSVFTARATDMDKGDY-----GKLNYS--IISAAASGYTDVDDSWKLFRVDAL 183
IG V TA+ G+ G +S +++A A T DSW+ F V
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET---DSWESFFVSVR 297
Query: 184 TGLVTTNAVFDYEARSRYAFTLLSTYSVWTRSLVWSR--------PMQCLI-MRRGVVFD 234
+ +F R A+ S+ L S PM + + + V D
Sbjct: 298 KAIT---VLFFIGVRCYEAY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 235 YEARSRYAFTLLSTDSGGRTCKVKVRVEIE---SRDEF----HPQ--------------- 272
Y ++ + L +VEI PQ
Sbjct: 352 YVNKTN---SHLPAGK---------QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 273 ---------FTERTFKFILSGTDLPVG 290
F+ER KF LPV
Sbjct: 400 SGLDQSRIPFSERKLKFSNRF--LPVA 424
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.54
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 103 SITHLKITLQD-ENDNAPKFPITEYLE 128
++ L+ +L+ +D+AP I +E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 2.9
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 31/122 (25%)
Query: 68 LSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKIT----LQDENDNAPKFPI 123
+++Q ++Y + E+ + + P ++I L D K
Sbjct: 118 MAIQ--VNYSSEVKENSVDSDDKAKVPP----------LIRIVSGLELSDTKQKGKK--- 162
Query: 124 TEYLEFVGEN-EPIGSSVFT--ARATDMDKGDYGKLNYSIISAAASGYT--DVDDSWKLF 178
+L E E I + + N + T D KL+
Sbjct: 163 --FLVIAYEPFENIA---IELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAIS--KLY 215
Query: 179 RV 180
V
Sbjct: 216 YV 217
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 25.6 bits (57), Expect = 8.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 60 AVDPLTGVLSVQQPLDYDT--GSSEH-LLILKVEDGGKPPLDSPLSSITHLKITLQDEND 116
V+ G+L V +D + G S + L+V +D PL + H+++ ++D ND
Sbjct: 50 EVNLQNGILFVNSRIDREELCGRSAECSIHLEVI------VDRPL-QVFHVEVEVRDIND 102
Query: 117 N 117
N
Sbjct: 103 N 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,591,061
Number of extensions: 266177
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 130
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)